Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ADAMTSL4	54507	hgsc.bcm.edu	hg19	1	150532541	150532541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	ADAMTSL4	NM_019032	exon19	c.C3094A	p.Q1032K	GATGATCAATGCA	.	188.0	46.0	185.0	0.0	.	101	.	.	Atlas-SNP
SLC35F3	148641	hgsc.bcm.edu	hg19	1	234041461	234041461	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	SLC35F3	NM_173508	exon2	c.C240T	p.I80I	GCGCATCACTGGC	.	292.0	75.0	230.0	0.0	.	81	.	.	Atlas-SNP
SCN3A	6328	hgsc.bcm.edu	hg19	2	165946841	165946841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	SCN3A	NM_006922	exon28	c.A5822G	p.K1941R	TCTTGTTTTATAG	.	335.0	84.0	271.0	0.0	.	544	.	.	Atlas-SNP
MYH15	22989	hgsc.bcm.edu	hg19	3	108203986	108203986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	MYH15	NM_014981	exon12	c.T1126C	p.F376L	GTTTAAATTTCAT	.	150.0	38.0	173.0	0.0	.	223	.	.	Atlas-SNP
PLEKHG4B	153478	hgsc.bcm.edu	hg19	5	161903	161903	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	PLEKHG4B	NM_052909	exon10	c.C1425T	p.S475S	GCAATCCTGCCAG	.	111.0	16.0	129.0	0.0	.	167	.	.	Atlas-SNP
ITGA1	3672	hgsc.bcm.edu	hg19	5	52193327	52193327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	ITGA1	NM_181501	exon10	c.T1132C	p.S378P	GAAATGTCTCAGA	.	90.0	15.0	94.0	0.0	.	112	.	.	Atlas-SNP
ANKRD32	84250	hgsc.bcm.edu	hg19	5	94001726	94001726	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	ANKRD32	NM_032290	exon12	c.T1529G	p.I510S	TCCTTATCAGGTA	.	60.0	5.0	43.0	0.0	.	117	.	.	Atlas-SNP
MGAT4B	11282	hgsc.bcm.edu	hg19	5	179226059	179226059	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	MGAT4B	NM_054013	exon10	c.C1257T	p.S419S	GCTCGTGCTCACC	.	367.0	42.0	348.0	0.0	.	41	.	.	Atlas-SNP
BAG6	7917	hgsc.bcm.edu	hg19	6	31610883	31610883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	BAG6	NM_004639	exon14	c.C1676T	p.T559I	CCTGGGGTCCCCT	.	12.0	5.0	14.0	0.0	.	73	.	.	Atlas-SNP
LFNG	3955	hgsc.bcm.edu	hg19	7	2566469	2566469	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	LFNG	NM_001166355	exon8	c.775-1G>T	.	CCCACAGGTGACG	.	65.0	4.0	86.0	0.0	.	57	.	.	Atlas-SNP
FOCAD	54914	hgsc.bcm.edu	hg19	9	20740268	20740268	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	NM_017794	exon7	c.C321T	p.H107H	TATGCACTTACTA	.	226.0	53.0	232.0	0.0	.	.	.	.	Atlas-SNP
PAX5	5079	hgsc.bcm.edu	hg19	9	37002701	37002701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	PAX5	NM_016734	exon5	c.G548A	p.G183D	AGGATGCCGCTGA	.	132.0	6.0	182.0	0.0	.	250	.	.	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	hg19	12	25380255	25380255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	KRAS	NM_004985	exon3	c.G203T	p.R68M	TGGTCCCTCATTG	.	151.0	34.0	144.0	0.0	.	30930	.	.	Atlas-SNP
SYT16	83851	hgsc.bcm.edu	hg19	14	62547559	62547559	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	SYT16	NM_031914	exon4	c.A1001G	p.D334G	AACAGGACAGGAC	.	159.0	39.0	214.0	0.0	.	144	.	.	Atlas-SNP
UNC79	57578	hgsc.bcm.edu	hg19	14	94038399	94038399	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	UNC79	NM_020818	exon15	c.A1384T	p.N462Y	CCAGATAATCAGT	.	42.0	15.0	62.0	0.0	.	366	.	.	Atlas-SNP
SNAI3	333929	hgsc.bcm.edu	hg19	16	88747899	88747899	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	SNAI3	NM_178310	exon2	c.C300A	p.A100A	AATGGCGGCCCGG	.	88.0	4.0	94.0	0.0	.	23	.	.	Atlas-SNP
PTPRM	5797	hgsc.bcm.edu	hg19	18	7888162	7888162	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	PTPRM	NM_001105244	exon3	c.C255T	p.L85L	CCTGCTCTTACCC	.	147.0	37.0	186.0	0.0	.	185	.	.	Atlas-SNP
ZNF519	162655	hgsc.bcm.edu	hg19	18	14105585	14105585	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	ZNF519,NS,carcinoma,0,1	ZNF519	NM_145287	exon3	c.G954A	p.K318K	GAAAGGCTTCTCT	.	78.0	4.0	64.0	0.0	.	53	.	.	Atlas-SNP
ZNF426	79088	hgsc.bcm.edu	hg19	19	9643591	9643591	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	ZNF426,colon,carcinoma,0,1	ZNF426	NM_024106	exon6	c.C255G	p.I85M	TTTGATGATCTGA	.	97.0	21.0	96.0	0.0	.	56	.	.	Atlas-SNP
ZNF585A	199704	hgsc.bcm.edu	hg19	19	37643714	37643714	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	ZNF585A	NM_199126	exon6	c.T922G	p.F308V	AGGTAAAGGCCTT	.	207.0	45.0	180.0	0.0	.	117	.	.	Atlas-SNP
MAP3K10	4294	hgsc.bcm.edu	hg19	19	40698304	40698304	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	MAP3K10	NM_002446	exon1	c.G366A	p.V122V	GGAGGTGGCAGTC	.	31.0	14.0	38.0	0.0	.	70	.	.	Atlas-SNP
HRC	3270	hgsc.bcm.edu	hg19	19	49657886	49657886	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	HRC	NM_002152	exon1	c.G609A	p.E203E	GGCCTCCTCTTCC	.	353.0	19.0	294.0	0.0	.	85	.	.	Atlas-SNP
HRC	3270	hgsc.bcm.edu	hg19	19	49657916	49657916	+	Silent	SNP	T	T	C	rs7409255		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	HRC	NM_002152	exon1	c.A579G	p.E193E	CTCCTCTTCTCCT	.	287.0	43.0	284.0	0.0	.	85	.	.	Atlas-SNP
HRC	3270	hgsc.bcm.edu	hg19	19	49657923	49657923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	HRC	NM_002152	exon1	c.A572G	p.E191G	TCTCCTTCATCAT	.	273.0	17.0	289.0	0.0	.	85	.	.	Atlas-SNP
ZNF841	284371	hgsc.bcm.edu	hg19	19	52569235	52569235	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	ZNF841	NM_001136499	exon7	c.T1900A	p.F634I	AACTGAAGACCTT	.	220.0	20.0	199.0	0.0	.	183	.	.	Atlas-SNP
ZNF83	55769	hgsc.bcm.edu	hg19	19	53117500	53117500	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	ZNF83	NM_018300	exon3	c.A318G	p.L106L	AAAATGTAAGCCT	.	232.0	31.0	219.0	0.0	.	73	.	.	Atlas-SNP
SYNJ1	8867	hgsc.bcm.edu	hg19	21	34017978	34017978	+	Silent	SNP	T	T	C	rs368850131		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	SYNJ1	NM_203446	exon25	c.A3486G	p.P1162P	TCTCTGTGGGGGA	.	10.0	7.0	4.0	0.0	.	253	.	.	Atlas-SNP
TMPRSS2	7113	hgsc.bcm.edu	hg19	21	42851169	42851169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	TMPRSS2	NM_001135099	exon7	c.G724A	p.G242R	TGGATCCGCTGTC	.	90.0	4.0	82.0	0.0	.	148	.	.	Atlas-SNP
ATP6	0	hgsc.bcm.edu	hg19	MT	8533	8533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	ENST00000361899	exon1	c.G7A	p.E3K	ATGAACGAAAATC	.	58.0	4.0	23.0	0.0	.	.	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13577	13577	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	ENST00000361567	exon1	c.T1241C	p.I414T	CTCTCATCGCTAC	.	84.0	6.0	58.0	0.0	.	.	.	.	Atlas-SNP
ND6	0	hgsc.bcm.edu	hg19	MT	14226	14226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	ENST00000361681	exon1	c.C448T	p.R150C	ATCAACGCCCATA	.	67.0	9.0	34.0	0.0	.	.	.	.	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15297	15297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	.	ENST00000361789	exon1	c.T551C	p.I184T	ACTTCATCTTGCC	.	102.0	11.0	49.0	0.0	.	.	.	.	Atlas-SNP
PIGQ	9091	hgsc.bcm.edu	hg19	16	633549	633549	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	PIGQ	NM_148920	exon10	c.2197delA	p.T733fs	.	.	112.0	19.0	93.0	0.0	.	43	.	.	Atlas-Indel,Pindel
MUC5B	727897	hgsc.bcm.edu	hg19	11	1263483	1263484	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	MUC5B	NM_002458	exon31	c.5372_5373del	p.1791_1791del	.	.	234.0	42.0	290.0	0.0	.	473	.	.	Atlas-Indel,Pindel
CPS1	1373	hgsc.bcm.edu	hg19	2	211507320	211507322	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	CPS1	NM_001122633	exon26	c.3089_3091del	p.1030_1031del	.	.	299.0	24.0	383.0	0.0	.	485	.	.	Atlas-Indel,Pindel
CASP8	841	hgsc.bcm.edu	hg19	2	202131436	202131437	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	CASP8	NM_001080125	exon2	c.404_405insAG	p.I135fs	.	.	154.0	31.0	150.0	0.0	.	272	.	.	Atlas-INDEL
NEUROD1	4760	hgsc.bcm.edu	hg19	2	182542873	182542885	+	Frame_Shift_Del	DEL	CATGGGAGCTGTC	CATGGGAGCTGTC	-	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	CATGGGAGCTGTC	CATGGGAGCTGTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	NEUROD1	NM_002500	exon2	c.704_716del	p.235_239del	.	.	99.0	10.0	142.0	0.0	.	67	.	.	Atlas-INDEL
AFF1	4299	hgsc.bcm.edu	hg19	4	88012960	88012963	+	Frame_Shift_Del	DEL	AGTT	AGTT	-	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	AGTT	AGTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	AFF1	NM_001166693	exon7	c.1206_1209del	p.402_403del	.	.	114.0	18.0	124.0	0.0	.	102	.	.	Atlas-Indel,Pindel
ECE2	9718	hgsc.bcm.edu	hg19	3	184002776	184002810	+	Frame_Shift_Del	DEL	TTGAGTTCCTGTCTTTCTTGCTGTCACCATTGGAG	TTGAGTTCCTGTCTTTCTTGCTGTCACCATTGGAG	-	novel		TCGA-DD-A4NB-01A-12D-A25V-10	TCGA-DD-A4NB-11A-11D-A25V-10	TTGAGTTCCTGTCTTTCTTGCTGTCACCATTGGAG	TTGAGTTCCTGTCTTTCTTGCTGTCACCATTGGAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5d58b984-e0b8-4237-a576-0e9d4079599e	861ea9b6-f62f-4d03-9672-dc9f8ce2695b	.	ECE2	NM_014693	exon9	c.1384_1418del	p.462_473del	.	.	326.0	22.0	475.0	0.0	.	303	.	.	Pindel
