Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
RPE65	6121	hgsc.bcm.edu	hg19	1	68910330	68910330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	RPE65	NM_000329	exon5	c.G379A	p.E127K	TAACCTCTACTCC	.	73.0	22.0	119.0	0.0	.	87	.	.	Atlas-SNP
AHCYL1	10768	hgsc.bcm.edu	hg19	1	110560140	110560140	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	AHCYL1	NM_006621	exon10	c.T987A	p.A329A	TGCTGCTCTCAAA	.	92.0	28.0	152.0	0.0	.	49	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158604337	158604337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPTA1	NM_003126	exon39	c.C5561T	p.T1854I	ACCTGAGTAGCAG	.	134.0	56.0	125.0	0.0	.	720	.	.	Atlas-SNP
OR6N2	81442	hgsc.bcm.edu	hg19	1	158746653	158746653	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OR6N2	NM_001005278	exon1	c.T773A	p.M258K	ACATACATGAAGA	.	507.0	132.0	337.0	0.0	.	78	.	.	Atlas-SNP
CASQ1	844	hgsc.bcm.edu	hg19	1	160165717	160165717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CASQ1	NM_001231	exon6	c.G682A	p.E228K	CTGAATGAGATTG	.	177.0	27.0	135.0	0.0	.	55	.	.	Atlas-SNP
PKP1	5317	hgsc.bcm.edu	hg19	1	201282409	201282409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PKP1	NM_001005337	exon3	c.G422T	p.G141V	GCGCAGGCAGCGA	.	328.0	137.0	265.0	1.0	.	127	.	.	Atlas-SNP
CD46	4179	hgsc.bcm.edu	hg19	1	207940538	207940538	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CD46	NM_172352	exon6	c.A854C	p.K285T	GTCTTAAAGGTAC	.	325.0	137.0	239.0	0.0	.	34	.	.	Atlas-SNP
LBR	3930	hgsc.bcm.edu	hg19	1	225594411	225594411	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	LBR	NM_194442	exon11	c.A1438T	p.N480Y	CTTCATTTGGATG	.	294.0	123.0	205.0	0.0	.	54	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228467000	228467000	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	OBSCN_ENST00000570156,caecum,carcinoma,0,4	OBSCN	NM_001271223	exon32	c.G8538T	p.T2846T	GAAGACGGTGTTG	.	182.0	37.0	158.0	0.0	.	2142	.	.	Atlas-SNP
OR2L5	81466	hgsc.bcm.edu	hg19	1	248185795	248185795	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_001258284	exon1	c.T546A	p.A182A	TCCAGCTATGTTG	.	510.0	112.0	369.0	0.0	.	.	.	.	Atlas-SNP
OR2T34	127068	hgsc.bcm.edu	hg19	1	248737387	248737387	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OR2T34	NM_001001821	exon1	c.C672G	p.T224T	GATGAGGGTGTAT	.	703.0	164.0	576.0	1.0	.	72	.	.	Atlas-SNP
HEATR5B	54497	hgsc.bcm.edu	hg19	2	37256043	37256043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	HEATR5B	NM_019024	exon23	c.G3382A	p.G1128R	TAACCCCAGGGGC	.	109.0	53.0	118.0	0.0	.	185	.	.	Atlas-SNP
PLEKHH2	130271	hgsc.bcm.edu	hg19	2	43980783	43980783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PLEKHH2	NM_172069	exon25	c.G3679A	p.G1227R	GCTCGTGGAGAGA	.	134.0	49.0	164.0	0.0	.	156	.	.	Atlas-SNP
GPR148	344561	hgsc.bcm.edu	hg19	2	131486786	131486786	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	GPR148	NM_207364	exon1	c.T62A	p.L21H	TCCAGCTCATCAG	.	317.0	110.0	377.0	0.0	.	54	.	.	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	hg19	2	133540419	133540419	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	NCKAP5	NM_207363	exon14	c.C3965G	p.S1322C	TTGGGAGAGCTTT	.	172.0	10.0	198.0	0.0	.	322	.	.	Atlas-SNP
HDAC4	9759	hgsc.bcm.edu	hg19	2	240056082	240056082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	HDAC4	NM_006037	exon11	c.C1153T	p.L385F	GGGAGAGCCTCTG	.	28.0	11.0	51.0	0.0	.	127	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	T	rs28931588	bycluster	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	CTNNB1,gallbladder,other,0,2	CTNNB1	NM_001098209	exon3	c.G94T	p.D32Y	TACCTGGACTCTG	.	301.0	109.0	355.0	1.0	.	4904	.	.	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	hg19	3	52360896	52360896	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DNAH1	NM_015512	exon5	c.C727G	p.L243V	ATCTACCTCCCAC	.	228.0	60.0	325.0	0.0	.	534	.	.	Atlas-SNP
ROBO1	6091	hgsc.bcm.edu	hg19	3	78688976	78688976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ROBO1	NM_002941	exon22	c.C2955A	p.N985K	GTGGTTGTTGCCA	.	123.0	48.0	150.0	0.0	.	833	.	.	Atlas-SNP
NSUN3	63899	hgsc.bcm.edu	hg19	3	93812983	93812983	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	NSUN3,right_upper_lobe,carcinoma,0,2	NSUN3	NM_022072	exon4	c.467-1G>T	.	TATTTAGGTTATC	.	80.0	4.0	82.0	0.0	.	33	.	.	Atlas-SNP
LYAR	55646	hgsc.bcm.edu	hg19	4	4283593	4283593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	LYAR	NM_017816	exon4	c.A154G	p.I52V	CACTTATGCATTT	.	188.0	82.0	214.0	0.0	.	36	.	.	Atlas-SNP
ABCG2	9429	hgsc.bcm.edu	hg19	4	89039368	89039368	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ABCG2	NM_004827	exon7	c.C734G	p.P245R	TATCGAGGCTGAT	.	120.0	49.0	188.0	0.0	.	151	.	.	Atlas-SNP
SNCA	6622	hgsc.bcm.edu	hg19	4	90756778	90756778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SNCA	NM_000345	exon2	c.G41A	p.G14E	ACAACTCCCTCCT	.	154.0	60.0	200.0	0.0	.	17	.	.	Atlas-SNP
SLC9B1	150159	hgsc.bcm.edu	hg19	4	103912818	103912818	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_001100874	exon2	c.A51G	p.Q17Q	AGATGTTTGGAAG	.	19.0	9.0	18.0	0.0	.	.	.	.	Atlas-SNP
LEF1	51176	hgsc.bcm.edu	hg19	4	109084858	109084858	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	LEF1	NM_016269	exon4	c.281-1G>A	.	GCTTTCCTGGGAA	.	90.0	26.0	165.0	0.0	.	93	.	.	Atlas-SNP
WWC2	80014	hgsc.bcm.edu	hg19	4	184182073	184182073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	WWC2	NM_024949	exon11	c.A1297G	p.S433G	TCTGCCAGCACCC	.	81.0	33.0	97.0	0.0	.	78	.	.	Atlas-SNP
BDP1	55814	hgsc.bcm.edu	hg19	5	70751716	70751716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	BDP1	NM_018429	exon1	c.G12T	p.R4S	CCGCAGGGCACGC	.	44.0	20.0	69.0	0.0	.	204	.	.	Atlas-SNP
LNPEP	4012	hgsc.bcm.edu	hg19	5	96342142	96342142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	LNPEP	NM_005575	exon11	c.A1958G	p.H653R	TGTGGCATATTCC	.	173.0	59.0	228.0	0.0	.	80	.	.	Atlas-SNP
PCDHA13	56136	hgsc.bcm.edu	hg19	5	140264081	140264081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PCDHA13	NM_031865	exon1	c.G2228T	p.S743I	GCTCCAGCGCGGC	.	46.0	14.0	64.0	0.0	.	213	.	.	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150911280	150911280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	FAT2	NM_001447	exon13	c.G9679T	p.V3227L	CGGGCACCTGCAC	.	14.0	9.0	21.0	0.0	.	465	.	.	Atlas-SNP
DUSP1	1843	hgsc.bcm.edu	hg19	5	172197268	172197268	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DUSP1	NM_004417	exon2	c.A409C	p.S137R	GTTTGCTGCACAG	.	202.0	79.0	281.0	1.0	.	27	.	.	Atlas-SNP
C6orf62	81688	hgsc.bcm.edu	hg19	6	24714570	24714570	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C6orf62	NM_030939	exon3	c.T405C	p.S135S	CTCATCAGATTCT	.	98.0	27.0	168.0	0.0	.	18	.	.	Atlas-SNP
GLTSCR1L	23506	hgsc.bcm.edu	hg19	6	42832697	42832697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_015349	exon12	c.C2753A	p.S918Y	GCACGTCTGAAGA	.	78.0	32.0	77.0	0.0	.	.	.	.	Atlas-SNP
CRISP3	10321	hgsc.bcm.edu	hg19	6	49698949	49698949	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CRISP3	NM_001190986	exon7	c.T606C	p.N202N	TAGTCTATTAGCC	.	221.0	91.0	258.0	0.0	.	67	.	.	Atlas-SNP
MYO6	4646	hgsc.bcm.edu	hg19	6	76595796	76595796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MYO6	NM_004999	exon24	c.G2492A	p.R831K	GCAAGAGGAGACA	.	113.0	50.0	180.0	0.0	.	124	.	.	Atlas-SNP
MRAP2	112609	hgsc.bcm.edu	hg19	6	84798909	84798909	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	MRAP2,NS,carcinoma,0,1	MRAP2	NM_138409	exon4	c.C327G	p.N109K	AGGCAACGAGGAG	.	107.0	40.0	153.0	0.0	.	40	.	.	Atlas-SNP
ASCC3	10973	hgsc.bcm.edu	hg19	6	101296578	101296578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ASCC3	NM_006828	exon4	c.A247G	p.T83A	TATCAGTTCCAAC	.	35.0	16.0	40.0	0.0	.	205	.	.	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	hg19	7	47930177	47930177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PKD1L1	NM_138295	exon16	c.C2638T	p.R880W	ACACCCGGGTCTC	.	92.0	34.0	87.0	0.0	.	328	.	.	Atlas-SNP
POM121L12	285877	hgsc.bcm.edu	hg19	7	53103689	53103689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	POM121L12	NM_182595	exon1	c.G325T	p.G109W	GCTCTGGGGCGAG	.	17.0	6.0	19.0	0.0	.	146	.	.	Atlas-SNP
POR	5447	hgsc.bcm.edu	hg19	7	75615486	75615486	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	POR	NM_000941	exon15	c.C1825G	p.Q609E	TACGTCCAGCACC	.	151.0	55.0	189.0	0.0	.	46	.	.	Atlas-SNP
CCDC132	55610	hgsc.bcm.edu	hg19	7	92935245	92935245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CCDC132	NM_017667	exon18	c.G1558A	p.G520S	TGTAGTGGTGGGA	.	163.0	57.0	239.0	0.0	.	136	.	.	Atlas-SNP
DOCK4	9732	hgsc.bcm.edu	hg19	7	111634195	111634195	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DOCK4	NM_014705	exon5	c.T310A	p.Y104N	CCACATAGAGTTG	.	61.0	17.0	94.0	0.0	.	365	.	.	Atlas-SNP
JHDM1D	80853	hgsc.bcm.edu	hg19	7	139824552	139824552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	JHDM1D	NM_030647	exon7	c.C920T	p.T307I	TCATCTGTTGGCT	.	65.0	20.0	91.0	0.0	.	54	.	.	Atlas-SNP
PDIA4	9601	hgsc.bcm.edu	hg19	7	148703056	148703056	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PDIA4	NM_004911	exon8	c.G1221A	p.K407K	GTAGCGCTTAGCA	.	65.0	21.0	99.0	0.0	.	57	.	.	Atlas-SNP
HTRA4	203100	hgsc.bcm.edu	hg19	8	38831805	38831805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	HTRA4	NM_153692	exon1	c.C23T	p.T8I	TGCGGACCGCGGG	.	73.0	32.0	102.0	0.0	.	25	.	.	Atlas-SNP
MCM4	4173	hgsc.bcm.edu	hg19	8	48874204	48874204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MCM4	NM_182746	exon3	c.G199A	p.V67M	CAGGACGTGCTGT	.	126.0	55.0	131.0	0.0	.	97	.	.	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	hg19	8	69032483	69032483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PREX2	NM_024870	exon29	c.A3557G	p.D1186G	CCTTTGACCAAAC	.	111.0	51.0	121.0	0.0	.	614	.	.	Atlas-SNP
SLCO5A1	81796	hgsc.bcm.edu	hg19	8	70591818	70591818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	SLCO5A1,NS,carcinoma,0,1	SLCO5A1	NM_030958	exon8	c.C1819T	p.R607C	CTTGGCGACTTTG	.	164.0	41.0	183.0	1.0	.	142	.	.	Atlas-SNP
SLC7A13	157724	hgsc.bcm.edu	hg19	8	87229802	87229802	+	Nonsense_Mutation	SNP	A	A	T	rs201235225	alternate_allele	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SLC7A13	NM_138817	exon3	c.T1076A	p.L359X	TTTATCAAATCAA	.	99.0	29.0	97.0	0.0	.	97	.	A|0.999;G|0.001	Atlas-SNP
INTS8	55656	hgsc.bcm.edu	hg19	8	95892419	95892419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	INTS8	NM_017864	exon27	c.G2945A	p.R982K	AGAGAAGGAAAAA	.	166.0	38.0	146.0	0.0	.	92	.	.	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	hg19	8	110393732	110393732	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PKHD1L1	NM_177531	exon3	c.A297G	p.T99T	AATTACATGCTAT	.	75.0	18.0	77.0	0.0	.	522	.	.	Atlas-SNP
INSL6	11172	hgsc.bcm.edu	hg19	9	5164195	5164195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	INSL6	NM_007179	exon2	c.G360T	p.K120N	ATATCCCTTTTTA	.	43.0	13.0	54.0	0.0	.	35	.	.	Atlas-SNP
ARID3C	138715	hgsc.bcm.edu	hg19	9	34622422	34622422	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ARID3C	NM_001017363	exon5	c.G970C	p.V324L	TCAGCACAGCTCT	.	65.0	17.0	99.0	0.0	.	33	.	.	Atlas-SNP
SMC5	23137	hgsc.bcm.edu	hg19	9	72879295	72879295	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SMC5	NM_015110	exon2	c.G261T	p.S87S	GAAGTCGAGCATT	.	170.0	69.0	291.0	0.0	.	96	.	.	Atlas-SNP
GNAQ	2776	hgsc.bcm.edu	hg19	9	80537112	80537112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	GNAQ,NS,carcinoma,0,2	GNAQ	NM_002072	exon2	c.A286T	p.T96S	TGAGTGTGTCCAT	.	138.0	9.0	166.0	1.0	.	384	.	.	Atlas-SNP
ABCA2	20	hgsc.bcm.edu	hg19	9	139916820	139916820	+	Missense_Mutation	SNP	G	G	A	rs367828133	alternate_allele	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ABCA2	NM_212533	exon6	c.C640T	p.R214C	CCACACGGGCGGC	.	58.0	17.0	73.0	0.0	.	113	.	.	Atlas-SNP
SPAG6	9576	hgsc.bcm.edu	hg19	10	22675715	22675715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPAG6	NM_172242	exon5	c.G505T	p.V169F	GGAGCTGTTCCTC	.	101.0	26.0	140.0	0.0	.	90	.	.	Atlas-SNP
ZNF37A	7587	hgsc.bcm.edu	hg19	10	38406925	38406925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ZNF37A	NM_003421	exon7	c.G846T	p.Q282H	CACCCAGAAGTCA	.	33.0	11.0	57.0	0.0	.	118	.	.	Atlas-SNP
C10orf71	118461	hgsc.bcm.edu	hg19	10	50533616	50533616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C10orf71	NM_001135196	exon3	c.G3026A	p.G1009D	CCGAGGGTGACAT	.	240.0	98.0	341.0	0.0	.	179	.	.	Atlas-SNP
CHAT	1103	hgsc.bcm.edu	hg19	10	50857589	50857589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CHAT	NM_020549	exon10	c.C1418A	p.S473Y	CAGACTCCGTCAG	.	162.0	79.0	187.0	0.0	.	162	.	.	Atlas-SNP
OR51L1	119682	hgsc.bcm.edu	hg19	11	5021109	5021109	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OR51L1	NM_001004755	exon1	c.G897A	p.K299K	AACAAAGCAGATT	.	95.0	40.0	153.0	0.0	.	60	.	.	Atlas-SNP
GLYATL2	219970	hgsc.bcm.edu	hg19	11	58607044	58607044	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	GLYATL2	NM_145016	exon2	c.T42C	p.Y14Y	GGATTTATACAGA	.	88.0	38.0	166.0	0.0	.	40	.	.	Atlas-SNP
SDHAF2	54949	hgsc.bcm.edu	hg19	11	61197634	61197634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SDHAF2	NM_017841	exon1	c.G16T	p.V6L	TCTACAGTGTTCT	.	58.0	12.0	91.0	0.0	.	26	.	.	Atlas-SNP
GAL	51083	hgsc.bcm.edu	hg19	11	68458398	68458398	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	GAL	NM_015973	exon6	c.C315G	p.L105L	TGCCCTCGACCGC	.	55.0	19.0	94.0	0.0	.	11	.	.	Atlas-SNP
FAM76B	143684	hgsc.bcm.edu	hg19	11	95522613	95522613	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	FAM76B	NM_144664	exon1	c.C30A	p.T10T	ACACTTGGTGCAG	.	70.0	28.0	57.0	0.0	.	10	.	.	Atlas-SNP
DENND5B	160518	hgsc.bcm.edu	hg19	12	31586176	31586176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DENND5B	NM_144973	exon8	c.G2019T	p.W673C	ACTTACCCAGCGA	.	86.0	33.0	100.0	0.0	.	114	.	.	Atlas-SNP
CCDC63	160762	hgsc.bcm.edu	hg19	12	111342552	111342552	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CCDC63	NM_152591	exon11	c.C1503T	p.P501P	CATCCCCCCAGTG	.	118.0	40.0	173.0	0.0	.	89	.	.	Atlas-SNP
SACS	26278	hgsc.bcm.edu	hg19	13	23907796	23907796	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	SACS_ENST00000382298,colon,carcinoma,0,2	SACS	NM_014363	exon10	c.C10219T	p.L3407L	ACTTTAGAATTTT	.	58.0	19.0	68.0	1.0	.	871	.	.	Atlas-SNP
SPATA13	221178	hgsc.bcm.edu	hg19	13	24864810	24864810	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPATA13	NM_001166271	exon9	c.T2868C	p.Y956Y	CATCTATTCCGAG	.	185.0	78.0	276.0	0.0	.	92	.	.	Atlas-SNP
USPL1	10208	hgsc.bcm.edu	hg19	13	31205167	31205167	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	USPL1	NM_005800	exon4	c.A424T	p.N142Y	AAACATAATGGAG	.	67.0	22.0	70.0	0.0	.	82	.	.	Atlas-SNP
PCDH17	27253	hgsc.bcm.edu	hg19	13	58298754	58298754	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PCDH17	NM_001040429	exon4	c.G2806T	p.E936X	CCAGAAGAGTGTG	.	94.0	40.0	92.0	0.0	.	304	.	.	Atlas-SNP
SOX21	11166	hgsc.bcm.edu	hg19	13	95364066	95364066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SOX21	NM_007084	exon1	c.C238T	p.R80W	TGCGCCGCGGCCG	.	154.0	63.0	164.0	0.0	.	21	.	.	Atlas-SNP
SPTB	6710	hgsc.bcm.edu	hg19	14	65260364	65260364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPTB	NM_001024858	exon13	c.C2017T	p.L673F	AGATGAGCACACT	.	183.0	77.0	244.0	0.0	.	378	.	.	Atlas-SNP
DCAF5	8816	hgsc.bcm.edu	hg19	14	69522154	69522154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DCAF5	NM_003861	exon9	c.G1249T	p.A417S	AGAAGGCCATCAT	.	117.0	54.0	167.0	0.0	.	67	.	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28491165	28491165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	HERC2	NM_004667	exon23	c.A3439G	p.K1147E	CATTTTTACTGAG	.	110.0	46.0	123.0	0.0	.	501	.	.	Atlas-SNP
CSNK1G1	53944	hgsc.bcm.edu	hg19	15	64508895	64508895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CSNK1G1	NM_022048	exon5	c.G310A	p.V104M	AATACACCTGTGG	.	150.0	64.0	237.0	0.0	.	56	.	.	Atlas-SNP
MYO9A	4649	hgsc.bcm.edu	hg19	15	72189982	72189982	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MYO9A	NM_006901	exon25	c.C4862G	p.S1621C	GTCTTGGATAATT	.	264.0	115.0	285.0	1.0	.	203	.	.	Atlas-SNP
TELO2	9894	hgsc.bcm.edu	hg19	16	1545384	1545384	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TELO2	NM_016111	exon3	c.G373C	p.A125P	CTGCTGGCCAGAT	.	14.0	7.0	19.0	0.0	.	44	.	.	Atlas-SNP
TBL3	10607	hgsc.bcm.edu	hg19	16	2026901	2026901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TBL3	NM_006453	exon14	c.C1379T	p.T460I	AGAACACAGCCCC	.	113.0	38.0	195.0	0.0	.	54	.	.	Atlas-SNP
RBFOX1	54715	hgsc.bcm.edu	hg19	16	7568314	7568314	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	RBFOX1	NM_145891	exon2	c.C253T	p.L85L	TTAAACCTGTACC	.	91.0	39.0	113.0	0.0	.	341	.	.	Atlas-SNP
TAOK2	9344	hgsc.bcm.edu	hg19	16	29994582	29994582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TAOK2	NM_004783	exon12	c.C1189T	p.R397W	GAAGCCCGGGAGA	.	54.0	22.0	60.0	0.0	.	142	.	.	Atlas-SNP
FAM192A	80011	hgsc.bcm.edu	hg19	16	57197926	57197926	+	Missense_Mutation	SNP	A	A	T	rs372644692		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	FAM192A	NM_024946	exon6	c.T534A	p.D178E	CTTGTCATCTGGC	.	168.0	67.0	228.0	0.0	.	23	.	.	Atlas-SNP
HYDIN	54768	hgsc.bcm.edu	hg19	16	70896085	70896085	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	HYDIN	NM_001270974	exon69	c.C11643G	p.H3881Q	GGCCCAGTGGTCC	.	111.0	40.0	184.0	0.0	.	788	.	.	Atlas-SNP
PLCG2	5336	hgsc.bcm.edu	hg19	16	81925146	81925146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PLCG2	NM_002661	exon11	c.G937A	p.D313N	ATGCAGGACATGA	.	239.0	81.0	335.0	0.0	.	276	.	.	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7726895	7726895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DNAH2	NM_020877	exon73	c.G11278T	p.D3760Y	CCTCGTGACTGGC	.	214.0	83.0	244.0	0.0	.	498	.	.	Atlas-SNP
ARHGAP44	9912	hgsc.bcm.edu	hg19	17	12852526	12852526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ARHGAP44	NM_014859	exon11	c.G931A	p.V311M	TGCGTGGTGGATG	.	65.0	25.0	72.0	0.0	.	55	.	.	Atlas-SNP
CDK5R1	8851	hgsc.bcm.edu	hg19	17	30814788	30814788	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CDK5R1	NM_003885	exon2	c.G150A	p.L50L	CGTGCTGCCTTGG	.	252.0	87.0	337.0	0.0	.	30	.	.	Atlas-SNP
DNAI2	64446	hgsc.bcm.edu	hg19	17	72281284	72281284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DNAI2	NM_001172810	exon3	c.C289T	p.R97W	CGTTTCCGGAAGA	.	138.0	7.0	204.0	0.0	.	102	.	.	Atlas-SNP
CIRBP	1153	hgsc.bcm.edu	hg19	19	1271158	1271158	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CIRBP	NM_001280	exon3	c.G123C	p.R41S	AGACAGGGAGACC	.	264.0	82.0	396.0	0.0	.	19	.	.	Atlas-SNP
ZNF676	163223	hgsc.bcm.edu	hg19	19	22362974	22362974	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ZNF676	NM_001001411	exon3	c.C1545G	p.S515R	GGACCAGCTGAAG	.	27.0	13.0	26.0	0.0	.	146	.	.	Atlas-SNP
DHX34	9704	hgsc.bcm.edu	hg19	19	47861354	47861354	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DHX34	NM_014681	exon4	c.C1249T	p.L417L	AGCGCCCTGTCTG	.	39.0	16.0	50.0	0.0	.	98	.	.	Atlas-SNP
BACE2	25825	hgsc.bcm.edu	hg19	21	42617961	42617961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	BACE2	NM_138992	exon6	c.G955A	p.V319M	GATGCGGTGGTGG	.	138.0	52.0	155.0	0.0	.	45	.	.	Atlas-SNP
PHEX	5251	hgsc.bcm.edu	hg19	X	22117127	22117127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PHEX	NM_000444	exon9	c.G937A	p.D313N	CAGTTCGACTGGC	.	34.0	21.0	31.0	0.0	.	95	.	.	Atlas-SNP
SHROOM4	57477	hgsc.bcm.edu	hg19	X	50376662	50376662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SHROOM4	NM_020717	exon4	c.C2411T	p.P804L	GGTTTTGGTCTCT	.	91.0	72.0	114.0	0.0	.	171	.	.	Atlas-SNP
PHF8	23133	hgsc.bcm.edu	hg19	X	54022132	54022132	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PHF8	NM_001184896	exon12	c.G1425A	p.L475L	TTCCACCAGGCGG	.	33.0	24.0	80.0	0.0	.	198	.	.	Atlas-SNP
IL1RAPL2	26280	hgsc.bcm.edu	hg19	X	105011411	105011411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	IL1RAPL2	NM_017416	exon11	c.C1818A	p.F606L	TGAATTCCACCCT	.	260.0	225.0	201.0	0.0	.	105	.	.	Atlas-SNP
DCAF12L1	139170	hgsc.bcm.edu	hg19	X	125685361	125685361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DCAF12L1	NM_178470	exon1	c.C1231T	p.L411F	GGTTGAGCCAGCC	.	281.0	132.0	218.0	1.0	.	135	.	.	Atlas-SNP
L1CAM	3897	hgsc.bcm.edu	hg19	X	153129931	153129931	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	L1CAM	NM_000425	exon24	c.A3168G	p.E1056E	CTTCTCTTCTGCC	.	90.0	44.0	98.0	0.0	.	189	.	.	Atlas-SNP
ATP6	0	hgsc.bcm.edu	hg19	MT	9152	9152	+	Missense_Mutation	SNP	T	T	C	rs375927883	alternate_allele	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	ENST00000361899	exon1	c.T626C	p.I209T	CCTTAATCCAAGC	.	88.0	29.0	26.0	0.0	.	.	.	.	Atlas-SNP
KCNB2	9312	hgsc.bcm.edu	hg19	8	73480055	73480055	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	KCNB2,NS,carcinoma,-1,1	KCNB2	NM_004770	exon2	c.85delC	p.R29fs	.	.	155.0	85.0	146.0	0.0	.	228	.	.	Atlas-Indel,Pindel
PRRC2B	84726	hgsc.bcm.edu	hg19	9	134351321	134351322	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	PRRC2B_ENST00000357304,NS,carcinoma,0,2	PRRC2B	NM_013318	exon15	c.3805_3806insG	p.R1269fs	.	.	73.0	25.0	95.0	0.0	.	266	.	.	Atlas-Indel,Pindel
C1orf127	148345	hgsc.bcm.edu	hg19	1	11008624	11008624	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C1orf127	NM_001170754	exon12	c.1569delG	p.P523fs	.	.	130.0	10.0	169.0	0.0	.	134	.	.	Atlas-INDEL
ZNF687	57592	hgsc.bcm.edu	hg19	1	151261996	151261997	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ZNF687	NM_020832	exon5	c.2614_2615insC	p.T872fs	.	.	311.0	65.0	251.0	0.0	.	94	.	.	Pindel
