Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
C1QA	712	hgsc.bcm.edu	hg19	1	22965369	22965369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	C1QA	NM_015991	exon3	c.C207A	p.D69E	AGGAGACCAGGGG	.	63.0	10.0	62.0	0.0	.	31	.	.	Atlas-SNP
RNF11	26994	hgsc.bcm.edu	hg19	1	51702468	51702468	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	RNF11	NM_014372	exon1	c.T40A	p.S14T	GACATCTCCCTGC	.	216.0	44.0	227.0	0.0	.	10	.	.	Atlas-SNP
SPAG17	200162	hgsc.bcm.edu	hg19	1	118635840	118635840	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	SPAG17	NM_206996	exon8	c.T1112A	p.L371H	TTAATAAGCTGCA	.	173.0	13.0	117.0	0.0	.	263	.	.	Atlas-SNP
NOTCH2NL	388677	hgsc.bcm.edu	hg19	1	145273364	145273364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	NOTCH2NL	NM_203458	exon3	c.C218G	p.S73C	TTGTGTCTCGACC	.	3638.0	161.0	2643.0	0.0	.	100	.	.	Atlas-SNP
TTC24	164118	hgsc.bcm.edu	hg19	1	156551507	156551507	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	TTC24,NS,carcinoma,0,1	TTC24	NM_001105669	exon2	c.C351T	p.G117G	ACACGGCGACCAA	.	228.0	30.0	136.0	0.0	.	46	.	.	Atlas-SNP
KIF21B	23046	hgsc.bcm.edu	hg19	1	200959773	200959773	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	KIF21B	NM_017596	exon19	c.G2766T	p.R922R	AATGATCCGTCGC	.	183.0	20.0	95.0	0.0	.	208	.	.	Atlas-SNP
LYST	1130	hgsc.bcm.edu	hg19	1	235940366	235940366	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	LYST	NM_000081	exon17	c.C5457T	p.A1819A	TACCCTGGCAAAG	.	68.0	4.0	52.0	0.0	.	370	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196740508	196740508	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	DNAH7	NM_018897	exon38	c.C6177A	p.P2059P	CTCAATGGGAGGT	.	201.0	44.0	193.0	0.0	.	512	.	.	Atlas-SNP
TRIP12	9320	hgsc.bcm.edu	hg19	2	230632438	230632438	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TRIP12	NM_004238	exon41	c.A5811T	p.T1937T	GACAATTGTCAAA	.	88.0	4.0	71.0	0.0	.	207	.	.	Atlas-SNP
SNED1	25992	hgsc.bcm.edu	hg19	2	242004719	242004719	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	SNED1	NM_001080437	exon21	c.C2718T	p.L906L	AGAGCTCTTCCCA	.	112.0	13.0	81.0	0.0	.	76	.	.	Atlas-SNP
COL7A1	1294	hgsc.bcm.edu	hg19	3	48610139	48610139	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	COL7A1	NM_000094	exon87	c.A6865T	p.K2289X	CTCCTTTAGGTCC	.	152.0	19.0	139.0	0.0	.	320	.	.	Atlas-SNP
KBTBD8	84541	hgsc.bcm.edu	hg19	3	67054129	67054129	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	KBTBD8	NM_032505	exon3	c.A738T	p.E246D	GATGGAAGATACC	.	53.0	12.0	65.0	0.0	.	101	.	.	Atlas-SNP
CASR	846	hgsc.bcm.edu	hg19	3	122003472	122003472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	CASR,NS,carcinoma,-1,1	CASR	NM_001178065	exon7	c.C2701T	p.R901C	CTGCGCCGCAGCA	.	37.0	2.0	55.0	0.0	.	190	.	.	Atlas-SNP
IGSF10	285313	hgsc.bcm.edu	hg19	3	151166486	151166486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	IGSF10	NM_178822	exon4	c.G1283T	p.W428L	ATTAACCAAGAGG	.	81.0	13.0	62.0	0.0	.	279	.	.	Atlas-SNP
ZNF732	654254	hgsc.bcm.edu	hg19	4	289878	289878	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ZNF732	NM_001137608	exon1	c.G67T	p.A23S	GCTGGGCAGGGTC	.	178.0	8.0	175.0	0.0	.	117	.	.	Atlas-SNP
ZNF732	654254	hgsc.bcm.edu	hg19	4	289881	289881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ZNF732	NM_001137608	exon1	c.C64A	p.P22T	GGGCAGGGTCCAG	.	170.0	8.0	168.0	0.0	.	117	.	.	Atlas-SNP
ATP10D	57205	hgsc.bcm.edu	hg19	4	47517533	47517533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ATP10D	NM_020453	exon3	c.T331C	p.W111R	CTGAACTGGGTAC	.	142.0	18.0	180.0	0.0	.	168	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79238646	79238646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	FRAS1	NM_001166133	exon17	c.C1944A	p.D648E	CTCTGACCATGGA	.	93.0	16.0	84.0	0.0	.	779	.	.	Atlas-SNP
SLC6A3	6531	hgsc.bcm.edu	hg19	5	1409893	1409893	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	SLC6A3	NM_001044	exon10	c.C1341T	p.L447L	CGTGAAGAGCTCA	.	198.0	35.0	169.0	0.0	.	102	.	.	Atlas-SNP
PCDHGC5	56097	hgsc.bcm.edu	hg19	5	140869878	140869878	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	PCDHGC5_ENST00000252087,NS,carcinoma,0,2	PCDHGC5	NM_018929	exon1	c.C1071T	p.N357N	GGCCAACCCTGTC	.	151.0	37.0	138.0	0.0	.	199	.	.	Atlas-SNP
RIMS2	9699	hgsc.bcm.edu	hg19	8	104897822	104897822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	RIMS2_ENST00000507740,NS,carcinoma,0,5	RIMS2	NM_001100117	exon4	c.G995T	p.R332L	AGTCACGCTACCG	.	94.0	12.0	85.0	0.0	.	1357	.	.	Atlas-SNP
TEK	7010	hgsc.bcm.edu	hg19	9	27206595	27206595	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TEK	NM_000459	exon15	c.G2380C	p.V794L	CCAGCTGTGCAGT	.	109.0	12.0	101.0	0.0	.	250	.	.	Atlas-SNP
VPS13A	23230	hgsc.bcm.edu	hg19	9	79983032	79983032	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	VPS13A	NM_001018038	exon62	c.A8533C	p.I2845L	GAAGTCATAAGAC	.	44.0	8.0	44.0	0.0	.	735	.	.	Atlas-SNP
MED27	9442	hgsc.bcm.edu	hg19	9	134738510	134738510	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	MED27	NM_004269	exon7	c.C741T	p.T247T	GGCAGTGGTGGCA	.	180.0	32.0	159.0	0.0	.	37	.	.	Atlas-SNP
RPL7A	6130	hgsc.bcm.edu	hg19	9	136216457	136216457	+	Missense_Mutation	SNP	G	G	A	rs11549070		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	RPL7A	NM_000972	exon3	c.G176A	p.R59H	GGCCCCGCTATAT	.	170.0	43.0	112.0	0.0	.	9	.	.	Atlas-SNP
BICC1	80114	hgsc.bcm.edu	hg19	10	60573612	60573612	+	Missense_Mutation	SNP	G	G	C	rs111922761	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	BICC1	NM_001080512	exon18	c.G2399C	p.R800P	TTTCACGGTCCAA	.	248.0	45.0	199.0	0.0	.	121	.	G|0.992;A|0.008	Atlas-SNP
OAT	4942	hgsc.bcm.edu	hg19	10	126089485	126089485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	OAT	NM_000274	exon9	c.G1083A	p.M361I	TAGCTTCATGAGT	.	144.0	31.0	118.0	0.0	.	25	.	.	Atlas-SNP
TTC40	54777	hgsc.bcm.edu	hg19	10	134731941	134731941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TTC40	NM_001200049	exon16	c.G1942T	p.D648Y	GCAGGTCGGGGCA	.	217.0	50.0	225.0	0.0	.	100	.	.	Atlas-SNP
SYVN1	84447	hgsc.bcm.edu	hg19	11	64900425	64900425	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	SYVN1	NM_172230	exon4	c.T346G	p.F116V	AGTGGAAACATTT	.	176.0	28.0	154.0	0.0	.	55	.	.	Atlas-SNP
C11orf73	51501	hgsc.bcm.edu	hg19	11	86048470	86048470	+	Silent	SNP	A	A	G	rs376891384		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	C11orf73	NM_016401	exon3	c.A318G	p.P106P	AACTCCATCTGTT	.	155.0	35.0	132.0	0.0	.	9	.	.	Atlas-SNP
TMEM218	219854	hgsc.bcm.edu	hg19	11	124971201	124971201	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TMEM218	NM_001258242	exon5	c.216-2A>T	.	AGAACCTGGGGTT	.	33.0	9.0	38.0	0.0	.	14	.	.	Atlas-SNP
TMTC1	83857	hgsc.bcm.edu	hg19	12	29920979	29920979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TMTC1	NM_001193451	exon2	c.C332T	p.P111L	TAGAATGGGTTCA	.	80.0	11.0	77.0	0.0	.	147	.	.	Atlas-SNP
DTX3	196403	hgsc.bcm.edu	hg19	12	58001298	58001298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	DTX3	NM_178502	exon5	c.C652T	p.R218W	AATGGGCGGATGC	.	407.0	63.0	249.0	0.0	.	27	.	.	Atlas-SNP
ANO4	121601	hgsc.bcm.edu	hg19	12	101490394	101490394	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ANO4	NM_178826	exon18	c.T1714A	p.S572T	AACAGCTCCACAT	.	172.0	23.0	127.0	0.0	.	183	.	.	Atlas-SNP
DUOX2	50506	hgsc.bcm.edu	hg19	15	45391660	45391660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	DUOX2	NM_014080	exon26	c.G3436A	p.A1146T	TGACTGCGTGGCC	.	92.0	16.0	81.0	0.0	.	137	.	.	Atlas-SNP
TSC2	7249	hgsc.bcm.edu	hg19	16	2134406	2134406	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	TSC2	NM_000548	exon34	c.C4183T	p.Q1395X	ACTCTGCAGGACA	.	60.0	14.0	84.0	0.0	.	364	.	.	Atlas-SNP
SEZ6L2	26470	hgsc.bcm.edu	hg19	16	29889651	29889651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	SEZ6L2	NM_001243332	exon10	c.G1669A	p.V557M	CGTGCACGCCCCA	.	125.0	34.0	120.0	0.0	.	137	.	.	Atlas-SNP
RBL2	5934	hgsc.bcm.edu	hg19	16	53524210	53524210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	RBL2	NM_005611	exon22	c.T3418C	p.X1140R	TCCCACTGAGGTT	.	106.0	23.0	115.0	0.0	.	115	.	.	Atlas-SNP
PPAP2C	8612	hgsc.bcm.edu	hg19	19	288111	288111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	PPAP2C	NM_177543	exon2	c.G176A	p.C59Y	TCCCCGCAGTAAA	.	272.0	38.0	245.0	0.0	.	38	.	.	Atlas-SNP
ZBTB7A	51341	hgsc.bcm.edu	hg19	19	4055085	4055085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	ZBTB7A,NS,carcinoma,0,1	ZBTB7A	NM_015898	exon2	c.G146A	p.R49H	ACCGAGCGGTGCG	.	9.0	3.0	28.0	0.0	.	35	.	.	Atlas-SNP
OR10H1	26539	hgsc.bcm.edu	hg19	19	15917988	15917988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	OR10H1	NM_013940	exon1	c.G860A	p.S287N	ATGGGGCTGAGGA	.	310.0	54.0	304.0	0.0	.	59	.	.	Atlas-SNP
ZNF529	57711	hgsc.bcm.edu	hg19	19	37045633	37045633	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ZNF529	NM_001145649	exon5	c.T174C	p.S58S	CTGAGCAGAATCC	.	148.0	35.0	146.0	0.0	.	82	.	.	Atlas-SNP
ZNF780B	163131	hgsc.bcm.edu	hg19	19	40540905	40540905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ZNF780B	NM_001005851	exon5	c.G1861A	p.A621T	TGAAGGCCTTGCC	.	144.0	26.0	134.0	0.0	.	143	.	.	Atlas-SNP
NLRP7	199713	hgsc.bcm.edu	hg19	19	55450802	55450802	+	Missense_Mutation	SNP	C	C	T	rs146205567	alternate_allele	TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	NLRP7	NM_001127255	exon4	c.G1385A	p.G462D	TAGCAGCCTTTGG	.	220.0	29.0	162.0	0.0	.	411	.	C|1.000;A|0.000	Atlas-SNP
ZNF446	55663	hgsc.bcm.edu	hg19	19	58991841	58991841	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ZNF446	NM_017908	exon7	c.C1101T	p.T367T	AGCCACCGGGGAA	.	92.0	4.0	123.0	0.0	.	22	.	.	Atlas-SNP
LAMA5	3911	hgsc.bcm.edu	hg19	20	60887087	60887087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	LAMA5	NM_005560	exon70	c.C9524T	p.S3175F	TGCAGGGACACCT	.	57.0	16.0	61.0	0.0	.	268	.	.	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	hg19	X	24382426	24382426	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	.	NM_001136234	exon1	c.G1549C	p.A517P	GCTGCTGCTCCTG	.	241.0	12.0	198.0	0.0	.	.	.	.	Atlas-SNP
BMP15	9210	hgsc.bcm.edu	hg19	X	50658924	50658924	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	BMP15	NM_005448	exon2	c.T496A	p.S166T	TTCCCTTCCTCAG	.	379.0	56.0	315.0	0.0	.	62	.	.	Atlas-SNP
DNASE1L1	1774	hgsc.bcm.edu	hg19	X	153633194	153633194	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	DNASE1L1	NM_006730	exon4	c.A286G	p.M96V	TCTCCATGTAGGT	.	293.0	58.0	233.0	0.0	.	20	.	.	Atlas-SNP
MPP1	4354	hgsc.bcm.edu	hg19	X	154010040	154010040	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	MPP1	NM_002436	exon10	c.G984A	p.G328G	CTCCTTCCCATCT	.	361.0	65.0	254.0	0.0	.	52	.	.	Atlas-SNP
ND4	0	hgsc.bcm.edu	hg19	MT	11825	11825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	.	ENST00000361381	exon1	c.G1066A	p.A356T	CTAATAGCTTTTT	.	33.0	31.0	11.0	0.0	.	.	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13917	13917	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	.	ENST00000361567	exon1	c.A1581G	p.G527G	ACTCGGATTCTAC	.	31.0	18.0	7.0	0.0	.	.	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	14063	14063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	.	ENST00000361567	exon1	c.T1727C	p.I576T	CCATCATCACCTC	.	36.0	5.0	15.0	0.0	.	.	.	.	Atlas-SNP
PGS1	9489	hgsc.bcm.edu	hg19	17	76395500	76395500	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	PGS1	NM_024419	exon5	c.582delC	p.L194fs	.	.	176.0	46.0	124.0	0.0	.	30	.	.	Atlas-Indel,Pindel
STAT5B	6777	hgsc.bcm.edu	hg19	17	40384099	40384100	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	STAT5B	NM_012448	exon2	c.47_48insC	p.H16fs	.	.	242.0	48.0	199.0	0.0	.	89	.	.	Atlas-Indel,Pindel
AKT3	10000	hgsc.bcm.edu	hg19	1	243800994	243800994	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	AKT3	NM_001206729	exon6	c.481delA	p.K161fs	.	.	59.0	22.0	31.0	0.0	.	177	.	.	Atlas-Indel,Pindel
ADNP	23394	hgsc.bcm.edu	hg19	20	49508933	49508934	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-DD-A4NH-01A-11D-A27I-10	TCGA-DD-A4NH-10A-01D-A27I-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d6e688d-9606-497f-93d0-ab5238450020	2aa64a1b-06d8-4074-ad24-b2c108738bd2	.	ADNP	NM_015339	exon5	c.2318_2319del	p.773_773del	.	.	201.0	43.0	180.0	0.0	.	106	.	.	Atlas-Indel,Pindel
