Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PIK3CD	5293	hgsc.bcm.edu	hg19	1	9777146	9777146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PIK3CD	NM_005026	exon7	c.C910T	p.P304S	AAACCACCTCCCA	.	260.0	94.0	238.0	0.0	.	86	.	.	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	hg19	1	16261862	16261862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SPEN	NM_015001	exon11	c.A9127G	p.S3043G	CACCCCAGCAGTA	.	785.0	160.0	691.0	0.0	.	374	.	.	Atlas-SNP
CD101	9398	hgsc.bcm.edu	hg19	1	117554255	117554255	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CD101	NM_001256109	exon3	c.G508C	p.A170P	TGTGAGGCATCCA	.	234.0	33.0	139.0	0.0	.	95	.	.	Atlas-SNP
PYHIN1	149628	hgsc.bcm.edu	hg19	1	158906744	158906744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PYHIN1	NM_152501	exon2	c.A44G	p.E15G	GATTAGAGGTCAT	.	196.0	24.0	136.0	0.0	.	208	.	.	Atlas-SNP
FBXO28	23219	hgsc.bcm.edu	hg19	1	224345363	224345363	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	FBXO28	NM_015176	exon5	c.A1022T	p.N341I	GGCAGAATGAGGA	.	244.0	11.0	156.0	0.0	.	34	.	.	Atlas-SNP
ASTL	431705	hgsc.bcm.edu	hg19	2	96803391	96803391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ASTL	NM_001002036	exon2	c.G104A	p.G35D	CTGGTACCACAGG	.	80.0	11.0	66.0	0.0	.	59	.	.	Atlas-SNP
IL36B	27177	hgsc.bcm.edu	hg19	2	113786633	113786633	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	IL36B	NM_173178	exon4	c.T144A	p.C48X	GTCTCTACAGGCT	.	117.0	19.0	101.0	0.0	.	69	.	.	Atlas-SNP
GLI2	2736	hgsc.bcm.edu	hg19	2	121747764	121747764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	GLI2	NM_005270	exon13	c.G4274T	p.G1425V	ACATGGGGTCGGT	.	140.0	55.0	93.0	0.0	.	187	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179424403	179424403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TTN	NM_001267550	exon326	c.A86456G	p.D28819G	CCAGAGTCATTTC	.	134.0	22.0	164.0	0.0	.	18412	.	.	Atlas-SNP
COL3A1	1281	hgsc.bcm.edu	hg19	2	189873705	189873705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	COL3A1	NM_000090	exon48	c.G3581A	p.G1194D	CCCCTGGTCCTTG	.	110.0	16.0	131.0	0.0	.	292	.	.	Atlas-SNP
SLC4A3	6508	hgsc.bcm.edu	hg19	2	220500541	220500541	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SLC4A3	NM_201574	exon14	c.C2200T	p.Q734X	CACTCCCAGTGTG	.	85.0	4.0	96.0	0.0	.	144	.	.	Atlas-SNP
CIDEC	63924	hgsc.bcm.edu	hg19	3	9911995	9911995	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CIDEC	NM_001199623	exon4	c.T258C	p.T86T	CATCAGAGTGTCC	.	68.0	11.0	46.0	0.0	.	22	.	.	Atlas-SNP
CAND2	23066	hgsc.bcm.edu	hg19	3	12861637	12861637	+	Silent	SNP	G	G	C	rs145134860	bycluster;by1000genomes;alternate_allele	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CAND2	NM_001162499	exon11	c.G2997C	p.S999S	TATCTCGGACCAG	.	194.0	52.0	129.0	0.0	.	138	.	G|0.999;A|0.001	Atlas-SNP
CAND2	23066	hgsc.bcm.edu	hg19	3	12861638	12861638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CAND2	NM_001162499	exon11	c.G2998T	p.D1000Y	ATCTCGGACCAGC	.	194.0	52.0	127.0	0.0	.	138	.	.	Atlas-SNP
TCAIM	285343	hgsc.bcm.edu	hg19	3	44442771	44442771	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	NM_173826	exon10	c.T1195A	p.W399R	CTCCAGTGGTTTA	.	83.0	29.0	49.0	0.0	.	.	.	.	Atlas-SNP
ZBTB11	27107	hgsc.bcm.edu	hg19	3	101383939	101383939	+	Missense_Mutation	SNP	G	G	A	rs370264120		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ZBTB11	NM_014415	exon4	c.C1492T	p.P498S	CATCAGGGCCAAA	.	176.0	21.0	126.0	0.0	.	77	.	.	Atlas-SNP
HTR3C	170572	hgsc.bcm.edu	hg19	3	183777775	183777775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	HTR3C	NM_130770	exon8	c.C1085A	p.P362H	GCTGTCCCACTGC	.	65.0	26.0	66.0	0.0	.	65	.	.	Atlas-SNP
HTR3C	170572	hgsc.bcm.edu	hg19	3	183777776	183777776	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	HTR3C	NM_130770	exon8	c.C1086A	p.P362P	CTGTCCCACTGCG	.	66.0	28.0	66.0	0.0	.	65	.	.	Atlas-SNP
PCDH18	54510	hgsc.bcm.edu	hg19	4	138450774	138450774	+	Missense_Mutation	SNP	G	G	T	rs375416110	alternate_allele	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PCDH18	NM_019035	exon1	c.C2469A	p.H823Q	AGTGGCGTGGGTG	.	170.0	56.0	180.0	0.0	.	229	.	.	Atlas-SNP
IRX1	79192	hgsc.bcm.edu	hg19	5	3599429	3599429	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	IRX1	NM_024337	exon2	c.T367A	p.F123I	GGCCAGTTCCAAT	.	116.0	13.0	89.0	0.0	.	106	.	.	Atlas-SNP
ZFYVE16	9765	hgsc.bcm.edu	hg19	5	79733987	79733987	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ZFYVE16	NM_001105251	exon4	c.T1483G	p.C495G	TCTGATTGTTGTG	.	139.0	7.0	89.0	0.0	.	100	.	.	Atlas-SNP
TMEM232	642987	hgsc.bcm.edu	hg19	5	109976647	109976647	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TMEM232	NM_001039763	exon4	c.T288A	p.P96P	TGCAGCAGGAAGA	.	383.0	113.0	279.0	0.0	.	57	.	.	Atlas-SNP
PCDHAC2	56134	hgsc.bcm.edu	hg19	5	140348025	140348025	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PCDHAC2	NM_031883	exon1	c.A1674G	p.P558P	CCCACCACTGAGC	.	160.0	55.0	129.0	0.0	.	142	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56494239	56494239	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	DST	NM_001723	exon18	c.A2673T	p.Q891H	TCTCCATTGCTAA	.	61.0	23.0	48.0	0.0	.	1427	.	.	Atlas-SNP
ROS1	6098	hgsc.bcm.edu	hg19	6	117709158	117709158	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ROS1	NM_002944	exon13	c.T1799G	p.L600X	GGGCCTAATTCAA	.	77.0	43.0	76.0	0.0	.	728	.	.	Atlas-SNP
DPY19L1	23333	hgsc.bcm.edu	hg19	7	35013135	35013135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	DPY19L1	NM_015283	exon8	c.A686G	p.H229R	AGAATATGAGTCA	.	132.0	37.0	113.0	0.0	.	56	.	.	Atlas-SNP
DPY19L1	23333	hgsc.bcm.edu	hg19	7	35013143	35013143	+	Silent	SNP	T	T	C	rs61744367	byfrequency;alternate_allele	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	DPY19L1	NM_015283	exon8	c.A678G	p.L226L	AGTCACTAGCAAC	.	133.0	38.0	114.0	0.0	.	56	.	T|0.974;A|0.026	Atlas-SNP
PEG10	23089	hgsc.bcm.edu	hg19	7	94293118	94293118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PEG10	NM_001172438	exon2	c.G478A	p.E160K	CTCCCAGAGAAGT	.	173.0	37.0	116.0	0.0	.	36	.	.	Atlas-SNP
ASB10	136371	hgsc.bcm.edu	hg19	7	150878543	150878543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ASB10	NM_001142459	exon3	c.G587A	p.C196Y	TCCGCACACCTAT	.	111.0	41.0	82.0	0.0	.	99	.	.	Atlas-SNP
UBR5	51366	hgsc.bcm.edu	hg19	8	103324043	103324043	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	UBR5	NM_015902	exon19	c.C2338G	p.Q780E	TTTCCTGTTCTGC	.	386.0	58.0	195.0	0.0	.	285	.	.	Atlas-SNP
ADCY8	114	hgsc.bcm.edu	hg19	8	131949435	131949435	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ADCY8	NM_001115	exon5	c.C1365T	p.C455C	ACGAAGGCAGTGA	.	225.0	50.0	135.0	0.0	.	291	.	.	Atlas-SNP
SLC45A4	57210	hgsc.bcm.edu	hg19	8	142231676	142231676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SLC45A4	NM_001080431	exon2	c.G277A	p.G93S	ACTTACCGATGGC	.	231.0	46.0	113.0	0.0	.	71	.	.	Atlas-SNP
MTAP	4507	hgsc.bcm.edu	hg19	9	21838002	21838002	+	Missense_Mutation	SNP	C	C	T	rs368718537		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	MTAP	NM_002451	exon5	c.C443T	p.T148M	CCAAAACGAGAGA	.	152.0	61.0	109.0	0.0	.	23	.	.	Atlas-SNP
PHF2	5253	hgsc.bcm.edu	hg19	9	96435949	96435949	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PHF2	NM_005392	exon18	c.C2431T	p.L811L	TCCTGCCTGCAGA	.	233.0	78.0	182.0	0.0	.	113	.	.	Atlas-SNP
KCNMA1	3778	hgsc.bcm.edu	hg19	10	78761222	78761222	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KCNMA1	NM_001161352	exon19	c.A2209T	p.R737X	AGGCTCTCTCAAG	.	302.0	39.0	228.0	0.0	.	370	.	.	Atlas-SNP
PAX2	5076	hgsc.bcm.edu	hg19	10	102509535	102509535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PAX2	NM_000278	exon2	c.G76A	p.V26M	GGGGGGGTGTTTG	.	28.0	9.0	24.0	0.0	.	83	.	.	Atlas-SNP
ADAM12	8038	hgsc.bcm.edu	hg19	10	127798378	127798378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ADAM12	NM_021641	exon7	c.A644G	p.Y215C	TCCACATACTTAG	.	68.0	21.0	78.0	0.0	.	388	.	.	Atlas-SNP
EBF3	253738	hgsc.bcm.edu	hg19	10	131665456	131665456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	EBF3	NM_001005463	exon10	c.T961C	p.Y321H	ATTTGTAGGAGAG	.	154.0	49.0	117.0	0.0	.	193	.	.	Atlas-SNP
UEVLD	55293	hgsc.bcm.edu	hg19	11	18579874	18579874	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	UEVLD	NM_001040697	exon7	c.A616C	p.I206L	CTGCAATACCCTG	.	69.0	8.0	62.0	0.0	.	58	.	.	Atlas-SNP
SHANK2	22941	hgsc.bcm.edu	hg19	11	70348970	70348970	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SHANK2	NM_133266	exon3	c.A364T	p.N122Y	GGTGATTCCCTCC	.	148.0	43.0	102.0	0.0	.	340	.	.	Atlas-SNP
C11orf70	85016	hgsc.bcm.edu	hg19	11	101952001	101952001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	C11orf70	NM_032930	exon6	c.G664A	p.V222I	TTTAAAGTTTCAG	.	34.0	7.0	28.0	0.0	.	33	.	.	Atlas-SNP
NFRKB	4798	hgsc.bcm.edu	hg19	11	129762747	129762747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NFRKB	NM_006165	exon1	c.A37G	p.T13A	CCATTGTTTCTTC	.	174.0	24.0	153.0	0.0	.	101	.	.	Atlas-SNP
IQSEC3	440073	hgsc.bcm.edu	hg19	12	271125	271125	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	IQSEC3	NM_001170738	exon8	c.T2477A	p.L826Q	GGGAGCTGGTGGT	.	215.0	106.0	232.0	0.0	.	154	.	.	Atlas-SNP
KRT1	3848	hgsc.bcm.edu	hg19	12	53074087	53074087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KRT1	NM_006121	exon1	c.G46T	p.G16C	TGAAGCCCCCTCC	.	187.0	22.0	172.0	0.0	.	110	.	.	Atlas-SNP
OR6C75	390323	hgsc.bcm.edu	hg19	12	55759405	55759405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	OR6C75	NM_001005497	exon1	c.G511T	p.V171L	TCCAATGTAATTG	.	117.0	42.0	106.0	0.0	.	67	.	.	Atlas-SNP
SUOX	6821	hgsc.bcm.edu	hg19	12	56398608	56398608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SUOX	NM_000456	exon6	c.G1435A	p.E479K	GGAGAGGAACAGC	.	210.0	22.0	169.0	0.0	.	33	.	.	Atlas-SNP
RB1	5925	hgsc.bcm.edu	hg19	13	48941636	48941636	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	RB1	NM_000321	exon10	c.A946T	p.N316Y	GTTGAAAATCTTT	.	11.0	5.0	23.0	0.0	.	1068	.	.	Atlas-SNP
RB1	5925	hgsc.bcm.edu	hg19	13	48951170	48951170	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	RB1,fibrous_tissue_and_uncertain_origin,malignant_fibrous_histiocytoma-pleomorphic_sarcoma,0,2	RB1	NM_000321	exon13	c.G1332A	p.Q444Q	ATCACAGGTAACT	.	43.0	21.0	47.0	0.0	.	1068	.	.	Atlas-SNP
BORA	79866	hgsc.bcm.edu	hg19	13	73312100	73312100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	.	NM_024808	exon5	c.T307C	p.F103L	TCCTAGTTTTTCA	.	71.0	18.0	96.0	0.0	.	.	.	.	Atlas-SNP
KLHL33	123103	hgsc.bcm.edu	hg19	14	20897132	20897132	+	Missense_Mutation	SNP	C	C	A	rs372057023	alternate_allele	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KLHL33	NM_001109997	exon4	c.G1478T	p.R493L	AGCCATCGGCCCA	.	151.0	56.0	91.0	0.0	.	37	.	.	Atlas-SNP
SNW1	22938	hgsc.bcm.edu	hg19	14	78202323	78202323	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SNW1	NM_012245	exon7	c.C665G	p.P222R	GAAGGTGGTCCCC	.	30.0	9.0	35.0	0.0	.	44	.	.	Atlas-SNP
NRXN3	9369	hgsc.bcm.edu	hg19	14	79434590	79434590	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NRXN3	NM_004796	exon11	c.T1924A	p.F642I	GATGGCTTTCAGG	.	196.0	49.0	169.0	0.0	.	342	.	.	Atlas-SNP
KCNK13	56659	hgsc.bcm.edu	hg19	14	90651290	90651290	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KCNK13	NM_022054	exon2	c.G1170T	p.G390G	AGGGGGGGTGGGA	.	63.0	16.0	55.0	0.0	.	76	.	.	Atlas-SNP
KIF26A	26153	hgsc.bcm.edu	hg19	14	104642627	104642627	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KIF26A	NM_015656	exon12	c.A3502C	p.S1168R	CCTGACAGTCCTG	.	41.0	7.0	20.0	0.0	.	84	.	.	Atlas-SNP
KIF26A	26153	hgsc.bcm.edu	hg19	14	104642628	104642628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KIF26A	NM_015656	exon12	c.G3503T	p.S1168I	CTGACAGTCCTGG	.	40.0	7.0	21.0	0.0	.	84	.	.	Atlas-SNP
ADAMTS17	170691	hgsc.bcm.edu	hg19	15	100594228	100594228	+	Silent	SNP	G	G	A	rs368641530		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ADAMTS17	NM_139057	exon16	c.C2169T	p.N723N	GTCACTGTTGATG	.	301.0	143.0	101.0	0.0	.	127	.	.	Atlas-SNP
FLYWCH2	114984	hgsc.bcm.edu	hg19	16	2946481	2946481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.,2	FLYWCH2	NM_001142499	exon3	c.G31A	p.G11S	CAGGAGGGTGAGA	.	55.0	11.0	48.0	0.0	.	12	.	.	Atlas-SNP
CDH3	1001	hgsc.bcm.edu	hg19	16	68721498	68721498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	CDH3	NM_001793	exon12	c.C1654A	p.Q552K	CCCCGTCAGATCA	.	214.0	112.0	247.0	0.0	.	68	.	.	Atlas-SNP
NF1	4763	hgsc.bcm.edu	hg19	17	29553694	29553694	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NF1	NM_000267	exon18	c.T2243G	p.M748R	ATATGATGTCAAC	.	91.0	40.0	65.0	0.0	.	1586	.	.	Atlas-SNP
ARL5C	390790	hgsc.bcm.edu	hg19	17	37319108	37319108	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ARL5C	NM_001143968	exon3	c.G111C	p.L37F	ATTGGTCAAGCTG	.	144.0	11.0	128.0	0.0	.	3	.	.	Atlas-SNP
FBXL20	84961	hgsc.bcm.edu	hg19	17	37421707	37421707	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	FBXL20	NM_001184906	exon13	c.838-1G>T	.	TGTTATCTGAAAG	.	83.0	36.0	56.0	0.0	.	36	.	.	Atlas-SNP
FZD2	2535	hgsc.bcm.edu	hg19	17	42635258	42635258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	FZD2	NM_001466	exon1	c.G202T	p.D68Y	CAGGAGGACGCAG	.	349.0	22.0	255.0	0.0	.	81	.	.	Atlas-SNP
ANKFN1	162282	hgsc.bcm.edu	hg19	17	54558126	54558126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ANKFN1	NM_153228	exon16	c.C2047T	p.L683F	TACGAGCTCCAGA	.	129.0	22.0	71.0	0.0	.	115	.	.	Atlas-SNP
APCDD1	147495	hgsc.bcm.edu	hg19	18	10468488	10468488	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	APCDD1	NM_153000	exon2	c.C81T	p.L27L	TGCCCTCCTTCAT	.	135.0	51.0	110.0	0.0	.	57	.	.	Atlas-SNP
C19orf35	374872	hgsc.bcm.edu	hg19	19	2280897	2280897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	C19orf35	NM_198532	exon2	c.G34A	p.E12K	CGGGCTCGGGGGG	.	44.0	4.0	28.0	0.0	.	18	.	.	Atlas-SNP
THOP1	7064	hgsc.bcm.edu	hg19	19	2794767	2794767	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	THOP1	NM_003249	exon3	c.A235C	p.R79R	GTTCAGAGGAATA	.	77.0	12.0	88.0	0.0	.	49	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	39018424	39018424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	RYR1	NM_000540	exon73	c.G10824T	p.Q3608H	GGACCAGGTGGGT	.	120.0	29.0	113.0	0.0	.	708	.	.	Atlas-SNP
SYT5	6861	hgsc.bcm.edu	hg19	19	55687105	55687105	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SYT5	NM_003180	exon5	c.C512G	p.P171R	AAGTGAGGGTTCA	.	351.0	67.0	273.0	0.0	.	45	.	.	Atlas-SNP
SSC5D	284297	hgsc.bcm.edu	hg19	19	56029621	56029621	+	Silent	SNP	A	A	C	rs202012508	bycluster	TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	SSC5D	NM_001144950	exon14	c.A3978C	p.T1326T	CCCCACAACTCCT	.	146.0	14.0	129.0	0.0	.	65	.	.	Atlas-SNP
NLRP9	338321	hgsc.bcm.edu	hg19	19	56244429	56244429	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NLRP9	NM_176820	exon2	c.C768G	p.I256M	GCTCAGGATAATT	.	49.0	13.0	48.0	0.0	.	163	.	.	Atlas-SNP
ANGPT4	51378	hgsc.bcm.edu	hg19	20	861812	861812	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	ANGPT4	NM_015985	exon6	c.951+2T>G	.	CCCCTAACCTTCC	.	144.0	51.0	118.0	0.0	.	77	.	.	Atlas-SNP
TMC2	117532	hgsc.bcm.edu	hg19	20	2591138	2591138	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TMC2	NM_080751	exon12	c.A1487T	p.Y496F	AGAATTACCACCC	.	259.0	34.0	224.0	0.0	.	121	.	.	Atlas-SNP
PHACTR3	116154	hgsc.bcm.edu	hg19	20	58416548	58416548	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	PHACTR3,NS,carcinoma,0,1	PHACTR3	NM_080672	exon11	c.G1545A	p.R515R	TGACAGGAGGGCA	.	256.0	38.0	218.0	0.0	.	104	.	.	Atlas-SNP
STMN3	50861	hgsc.bcm.edu	hg19	20	62275626	62275626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	STMN3	NM_015894	exon2	c.C56T	p.S19L	ATGAGCGACAGCA	.	126.0	41.0	85.0	0.0	.	19	.	.	Atlas-SNP
TTC3	7267	hgsc.bcm.edu	hg19	21	38538717	38538717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TTC3	NM_001001894	exon33	c.G4201A	p.A1401T	CAGATTGCCTCTG	.	210.0	61.0	148.0	0.0	.	182	.	.	Atlas-SNP
TMPRSS3	64699	hgsc.bcm.edu	hg19	21	43808542	43808542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	TMPRSS3	NM_001256317	exon5	c.A416G	p.N139S	GCAACATTTGCGT	.	288.0	94.0	172.0	0.0	.	40	.	.	Atlas-SNP
NLGN4X	57502	hgsc.bcm.edu	hg19	X	5821238	5821238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	NLGN4X	NM_181332	exon5	c.C1481A	p.P494H	ACATAGGGGACCT	.	589.0	134.0	431.0	0.0	.	191	.	.	Atlas-SNP
PFKFB1	5207	hgsc.bcm.edu	hg19	X	54978366	54978366	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PFKFB1	NM_002625	exon8	c.A818C	p.D273A	CCAGAGTCACCTC	.	235.0	70.0	206.0	0.0	.	64	.	.	Atlas-SNP
PLXNB3	5365	hgsc.bcm.edu	hg19	X	153034490	153034490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	PLXNB3	NM_001163257	exon6	c.G1423A	p.D475N	CTGCTGGACAGCA	.	183.0	10.0	141.0	0.0	.	208	.	.	Atlas-SNP
HPX	3263	hgsc.bcm.edu	hg19	11	6453126	6453127	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	HPX	NM_000613	exon8	c.957_958del	p.319_320del	.	.	51.0	15.0	67.0	0.0	.	33	.	.	Atlas-Indel,Pindel
KRTAP5-7	440050	hgsc.bcm.edu	hg19	11	71238649	71238675	+	In_Frame_Del	DEL	CTGCTGCTCCTCAGGCTGTGGGTCATC	CTGCTGCTCCTCAGGCTGTGGGTCATC	-	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	CTGCTGCTCCTCAGGCTGTGGGTCATC	CTGCTGCTCCTCAGGCTGTGGGTCATC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KRTAP5-7	NM_001012503	exon1	c.302_328del	p.101_110del	.	.	194.0	35.0	157.0	0.0	.	23	.	.	Atlas-INDEL
DNAJB14	79982	hgsc.bcm.edu	hg19	4	100844269	100844270	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	DNAJB14	NM_001031723	exon3	c.379_380insA	p.A127fs	.	.	170.0	50.0	155.0	0.0	.	25	.	.	Atlas-Indel,Pindel
KRT2	3849	hgsc.bcm.edu	hg19	12	53045641	53045642	+	In_Frame_Ins	INS	-	-	GCCGCTGCCGCCTCCAAA	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	KRT2	NM_000423	exon1	c.286_287insTTTGGAGGCGGCAGCGGC	p.F96delinsFGGGSGF	.	.	222.0	81.0	136.0	0.0	.	94	.	.	Atlas-INDEL
HSP90AA1	3320	hgsc.bcm.edu	hg19	14	102551156	102551178	+	Frame_Shift_Del	DEL	CTTAATCTTCTTCTTCTTCTTCT	CTTAATCTTCTTCTTCTTCTTCT	-	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	CTTAATCTTCTTCTTCTTCTTCT	CTTAATCTTCTTCTTCTTCTTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	HSP90AA1	NM_001017963	exon6	c.1188_1210del	p.396_404del	.	.	90.0	11.0	76.0	0.0	.	65	.	.	Atlas-Indel,Pindel
C1QTNF3	114899	hgsc.bcm.edu	hg19	5	34024046	34024056	+	Frame_Shift_Del	DEL	CATAAGGTACA	CATAAGGTACA	-	novel		TCGA-DD-A4NJ-01A-11D-A27I-10	TCGA-DD-A4NJ-10A-01D-A27I-10	CATAAGGTACA	CATAAGGTACA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e0b2f481-ccfb-4dcb-a3a4-56eb06e6623e	5a036ee2-e439-437a-8708-f758a33834ac	.	C1QTNF3	NM_181435	exon5	c.759_769del	p.253_257del	.	.	211.0	10.0	174.0	0.0	.	31	.	.	Pindel
