Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
SEMA6C	10500	hgsc.bcm.edu	hg19	1	151110260	151110260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	SEMA6C	NM_001178061	exon10	c.A683G	p.Q228R	AAGGCCTGGACAA	.	552.0	29.0	186.0	0.0	.	70	.	.	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	hg19	1	152084221	152084221	+	Missense_Mutation	SNP	A	A	C	rs202112040		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	TCHH	NM_007113	exon3	c.T1472G	p.L491R	TCCTCGAGCTTCA	.	263.0	17.0	80.0	0.0	.	275	.	.	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	hg19	1	152084224	152084224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	TCHH	NM_007113	exon3	c.A1469G	p.K490R	TCGAGCTTCAGCC	.	267.0	12.0	79.0	0.0	.	275	.	.	Atlas-SNP
PGLYRP3	114771	hgsc.bcm.edu	hg19	1	153277442	153277442	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	PGLYRP3	NM_052891	exon3	c.C357A	p.A119A	AAAGAAGGCGATG	.	590.0	113.0	198.0	0.0	.	55	.	.	Atlas-SNP
ASH1L	55870	hgsc.bcm.edu	hg19	1	155429586	155429586	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ASH1L	NM_018489	exon5	c.5086+2C>A	.	GCACTAGCCTGTT	.	95.0	4.0	34.0	0.0	.	279	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158622406	158622406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	SPTA1	NM_003126	exon23	c.C3226T	p.R1076C	GACGACGTCTGCG	.	300.0	106.0	127.0	0.0	.	720	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158624516	158624516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	SPTA1	NM_003126	exon21	c.A2921G	p.E974G	ACTCCCTCCACTG	.	227.0	35.0	79.0	0.0	.	720	.	.	Atlas-SNP
PVRL4	81607	hgsc.bcm.edu	hg19	1	161044015	161044015	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	PVRL4	NM_030916	exon6	c.C1149T	p.T383T	TTTCTGGGTCATC	.	620.0	126.0	204.0	0.0	.	48	.	.	Atlas-SNP
GPR52	9293	hgsc.bcm.edu	hg19	1	174417683	174417683	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	GPR52	NM_005684	exon1	c.A434T	p.K145M	TAACCAAGCCTCT	.	410.0	157.0	135.0	0.0	.	40	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181479711	181479711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	CACNA1E_ENST00000367573,NS,carcinoma,0,2	CACNA1E	NM_001205293	exon2	c.G365A	p.R122Q	TGTCCCGAAGACT	.	418.0	69.0	167.0	0.0	.	778	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186086707	186086707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	HMCN1	NM_031935	exon77	c.G11800A	p.G3934S	AAAAATGGTATAA	.	307.0	101.0	104.0	0.0	.	797	.	.	Atlas-SNP
TP53BP2	7159	hgsc.bcm.edu	hg19	1	223968572	223968572	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	TP53BP2	NM_001031685	exon18	c.C3388G	p.Q1130E	TCCTTTGTCTTGG	.	83.0	6.0	61.0	0.0	.	144	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196891544	196891544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	DNAH7	NM_018897	exon7	c.A607G	p.I203V	TAACTATGCTGTC	.	129.0	67.0	108.0	0.0	.	512	.	.	Atlas-SNP
AGAP1	116987	hgsc.bcm.edu	hg19	2	237032725	237032725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	AGAP1	NM_001037131	exon18	c.A2533G	p.N845D	AACAATAACCGGA	.	382.0	174.0	293.0	0.0	.	95	.	.	Atlas-SNP
ROBO1	6091	hgsc.bcm.edu	hg19	3	79174651	79174651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ROBO1	NM_002941	exon3	c.C127T	p.P43S	GGATTGGCGTCCC	.	334.0	149.0	269.0	0.0	.	833	.	.	Atlas-SNP
AGPAT9	84803	hgsc.bcm.edu	hg19	4	84457903	84457903	+	Missense_Mutation	SNP	T	T	A	rs150911365	bycluster;alternate_allele	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	AGPAT9	NM_001256421	exon2	c.T128A	p.V43E	TCCTAGTGAAAAC	.	36.0	28.0	47.0	0.0	.	41	.	T|1.000;C|0.000	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	hg19	4	85724505	85724505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	WDFY3	NM_014991	exon16	c.C2545T	p.P849S	CTCCAGGATGAAT	.	233.0	170.0	345.0	0.0	.	314	.	.	Atlas-SNP
WDR17	116966	hgsc.bcm.edu	hg19	4	177058704	177058704	+	Missense_Mutation	SNP	G	G	A	rs200199041	bycluster	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	WDR17	NM_170710	exon10	c.G1373A	p.R458Q	CTTCCCGAAATGG	.	32.0	26.0	61.0	0.0	.	198	.	.	Atlas-SNP
MARCH6	10299	hgsc.bcm.edu	hg19	5	10391780	10391780	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.,1	MARCH6	NM_005885	exon7	c.G703C	p.D235H	GAGGAGGACAATG	.	246.0	55.0	168.0	0.0	.	89	.	.	Atlas-SNP
SV2C	22987	hgsc.bcm.edu	hg19	5	75427868	75427868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	SV2C	NM_014979	exon2	c.G293T	p.S98I	TCCCCAGTATGAA	.	192.0	80.0	151.0	0.0	.	97	.	.	Atlas-SNP
CXXC5	51523	hgsc.bcm.edu	hg19	5	139060853	139060853	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	CXXC5	NM_016463	exon2	c.C745G	p.L249V	GGAGAGCTGGCCT	.	115.0	8.0	99.0	0.0	.	27	.	.	Atlas-SNP
DDX41	51428	hgsc.bcm.edu	hg19	5	176940709	176940709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	DDX41	NM_016222	exon10	c.C1075A	p.R359S	TGGTACGGATGTC	.	212.0	105.0	183.0	0.0	.	49	.	.	Atlas-SNP
BCLAF1	9774	hgsc.bcm.edu	hg19	6	136589436	136589436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	BCLAF1	NM_014739	exon10	c.C2261T	p.S754F	GCTGAAGAGGATG	.	94.0	11.0	106.0	0.0	.	203	.	.	Atlas-SNP
THSD7A	221981	hgsc.bcm.edu	hg19	7	11633070	11633070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	THSD7A	NM_015204	exon3	c.G1082A	p.C361Y	ACCTGGCACTCTT	.	136.0	61.0	128.0	0.0	.	219	.	.	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	hg19	7	47876604	47876604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	PKD1L1	NM_138295	exon37	c.A5858G	p.H1953R	GGCGTGTGCAGGT	.	373.0	84.0	291.0	0.0	.	328	.	.	Atlas-SNP
POM121L12	285877	hgsc.bcm.edu	hg19	7	53103948	53103948	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	POM121L12	NM_182595	exon1	c.C584G	p.P195R	ACGGGCCGTTGTG	.	71.0	33.0	43.0	0.0	.	146	.	.	Atlas-SNP
JHDM1D	80853	hgsc.bcm.edu	hg19	7	139876582	139876582	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	JHDM1D	NM_030647	exon1	c.G156C	p.M52I	CTCGATCATGAAG	.	75.0	29.0	49.0	0.0	.	54	.	.	Atlas-SNP
MYOM2	9172	hgsc.bcm.edu	hg19	8	2054129	2054129	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	MYOM2	NM_003970	exon22	c.T2832C	p.C944C	CTGGTGTAAATCC	.	172.0	105.0	128.0	0.0	.	251	.	.	Atlas-SNP
FGF20	26281	hgsc.bcm.edu	hg19	8	16850701	16850701	+	Silent	SNP	G	G	A	rs376980441		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	FGF20	NM_019851	exon3	c.C516T	p.D172D	AGTTCCGTCTTTG	.	151.0	51.0	114.0	0.0	.	16	.	.	Atlas-SNP
KIAA0146	23514	hgsc.bcm.edu	hg19	8	48309166	48309166	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	KIAA0146,NS,carcinoma,0,1	KIAA0146	NM_001080394	exon6	c.A756T	p.S252S	AAATTCAGCAAAG	.	92.0	38.0	100.0	0.0	.	64	.	.	Atlas-SNP
RECQL4	9401	hgsc.bcm.edu	hg19	8	145741755	145741755	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	RECQL4	NM_004260	exon5	c.G748C	p.G250R	GGCTCCCCACACG	.	41.0	13.0	22.0	0.0	.	75	.	.	Atlas-SNP
CIZ1	25792	hgsc.bcm.edu	hg19	9	130941315	130941315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	CIZ1	NM_001257975	exon8	c.G1261A	p.V421M	GCTGCACCTGCCT	.	174.0	81.0	110.0	0.0	.	75	.	.	Atlas-SNP
AGAP6	414189	hgsc.bcm.edu	hg19	10	51748622	51748622	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	AGAP6,bladder,carcinoma,0,1	AGAP6	NM_001077665	exon1	c.A147G	p.V49V	TGCTGTACAGCCT	.	27.0	3.0	8.0	0.0	.	53	.	.	Atlas-SNP
NAV2	89797	hgsc.bcm.edu	hg19	11	20083871	20083871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	NAV2,NS,malignant_melanoma,0,1	NAV2	NM_001244963	exon22	c.C5018T	p.S1673F	CACTCTCCTTGGT	.	41.0	22.0	22.0	0.0	.	255	.	.	Atlas-SNP
GAS2	2620	hgsc.bcm.edu	hg19	11	22777439	22777439	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	GAS2	NM_177553	exon7	c.C663G	p.F221L	CAAGTTCTGTGTG	.	137.0	38.0	95.0	0.0	.	46	.	.	Atlas-SNP
CERS5	91012	hgsc.bcm.edu	hg19	12	50529577	50529577	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	.	NM_147190	exon8	c.C810T	p.D270D	AAGGGTGTCACAG	.	117.0	46.0	107.0	0.0	.	.	.	.	Atlas-SNP
AGAP2	116986	hgsc.bcm.edu	hg19	12	58125709	58125709	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	AGAP2	NM_001122772	exon8	c.C1836T	p.L612L	GGACGGGAGGGAA	.	109.0	50.0	81.0	0.0	.	167	.	.	Atlas-SNP
EDNRB	1910	hgsc.bcm.edu	hg19	13	78474006	78474006	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	EDNRB	NM_001201397	exon7	c.A1452G	p.K484K	GCAGTTTTTGAAT	.	20.0	16.0	34.0	0.0	.	172	.	.	Atlas-SNP
ITGAM	3684	hgsc.bcm.edu	hg19	16	31282347	31282347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ITGAM	NM_000632	exon6	c.G500A	p.R167Q	ACTTTCGGCGGAT	.	203.0	63.0	151.0	0.0	.	137	.	.	Atlas-SNP
BBS2	583	hgsc.bcm.edu	hg19	16	56548459	56548459	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	BBS2	NM_031885	exon2	c.A251T	p.N84I	TCAGGGTTCAATA	.	140.0	109.0	256.0	0.0	.	67	.	.	Atlas-SNP
CDH19	28513	hgsc.bcm.edu	hg19	18	64239420	64239420	+	Missense_Mutation	SNP	G	G	C	rs368840152	alternate_allele	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	CDH19	NM_021153	exon2	c.C22G	p.R8G	TAAAACGCAGCAG	.	142.0	76.0	103.0	0.0	.	141	.	.	Atlas-SNP
APC2	10297	hgsc.bcm.edu	hg19	19	1456316	1456316	+	Silent	SNP	G	G	A	rs138830892	alternate_allele	TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	APC2	NM_005883	exon8	c.G729A	p.A243A	GCTGGCGGTGAAG	.	201.0	68.0	159.0	0.0	.	50	.	G|1.000;C|0.000	Atlas-SNP
BRD4	23476	hgsc.bcm.edu	hg19	19	15349580	15349580	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	BRD4	NM_058243	exon19	c.G3994T	p.E1332X	CCTGCTCCCGCTT	.	135.0	66.0	62.0	0.0	.	172	.	.	Atlas-SNP
CHERP	10523	hgsc.bcm.edu	hg19	19	16636060	16636060	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	CHERP	NM_006387	exon10	c.C1734G	p.F578L	GGCAGGGAAGTCC	.	187.0	67.0	98.0	0.0	.	70	.	.	Atlas-SNP
ZNF431	170959	hgsc.bcm.edu	hg19	19	21366647	21366647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ZNF431	NM_133473	exon5	c.G1541A	p.C514Y	ACAAATGTGAAGA	.	78.0	26.0	37.0	0.0	.	71	.	.	Atlas-SNP
ZNF461	92283	hgsc.bcm.edu	hg19	19	37130125	37130125	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ZNF461	NM_153257	exon6	c.A1122T	p.I374I	CTGATGTATAGTA	.	90.0	38.0	81.0	0.0	.	73	.	.	Atlas-SNP
ZNF585A	199704	hgsc.bcm.edu	hg19	19	37642633	37642633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ZNF585A	NM_199126	exon6	c.G2003T	p.C668F	TTCCCACACTCAG	.	358.0	130.0	226.0	0.0	.	117	.	.	Atlas-SNP
TSEN34	79042	hgsc.bcm.edu	hg19	19	54696036	54696036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	TSEN34	NM_024075	exon4	c.A557G	p.Q186R	TTGTCCAGCTGGC	.	259.0	126.0	206.0	1.0	.	17	.	.	Atlas-SNP
BCL2L1	598	hgsc.bcm.edu	hg19	20	30309743	30309743	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	BCL2L1	NM_138578	exon2	c.A279T	p.A93A	GTCGCCTGCCTCC	.	279.0	83.0	141.0	0.0	.	23	.	.	Atlas-SNP
ADNP	23394	hgsc.bcm.edu	hg19	20	49508566	49508566	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ADNP	NM_015339	exon5	c.T2685G	p.P895P	AAAAACAGGGTCA	.	161.0	84.0	112.0	0.0	.	106	.	.	Atlas-SNP
ADAMTS1	9510	hgsc.bcm.edu	hg19	21	28210546	28210546	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ADAMTS1	NM_006988	exon9	c.A2256G	p.E752E	TTTCACTTCGATG	.	83.0	35.0	69.0	0.0	.	131	.	.	Atlas-SNP
IFNAR1	3454	hgsc.bcm.edu	hg19	21	34721747	34721747	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	IFNAR1	NM_000629	exon8	c.T1041C	p.H347H	ATTCCATATCTAT	.	101.0	45.0	106.0	0.0	.	44	.	.	Atlas-SNP
DCAF8L2	347442	hgsc.bcm.edu	hg19	X	27765414	27765414	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	DCAF8L2	NM_001136533	exon1	c.G402A	p.E134E	GGAGGAGGAGGAG	.	76.0	11.0	45.0	0.0	.	79	.	.	Atlas-SNP
MAGEE1	57692	hgsc.bcm.edu	hg19	X	75649900	75649900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	MAGEE1	NM_020932	exon1	c.G1577A	p.R526H	AATATCGCAACCA	.	105.0	30.0	118.0	0.0	.	236	.	.	Atlas-SNP
ND4	0	hgsc.bcm.edu	hg19	MT	11250	11250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	.	ENST00000361381	exon1	c.T491C	p.L164P	TCGCACTAATTTA	.	18.0	6.0	7.0	0.0	.	.	.	.	Atlas-SNP
NPAS2	4862	hgsc.bcm.edu	hg19	2	101580582	101580590	+	In_Frame_Del	DEL	GGAAAGGAG	GGAAAGGAG	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	GGAAAGGAG	GGAAAGGAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	NPAS2,colon,carcinoma,+1,1	NPAS2	NM_002518	exon8	c.660_668del	p.220_223del	.	.	91.0	24.0	87.0	0.0	.	88	.	.	Atlas-Indel,Pindel
ABR	29	hgsc.bcm.edu	hg19	17	909373	909374	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.,2	ABR	NM_021962	exon23	c.2527_2528insC	p.I843fs	.	.	139.0	47.0	102.0	0.0	.	119	.	.	Atlas-Indel,Pindel
OR10C1	442194	hgsc.bcm.edu	hg19	6	29408254	29408254	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	OR10C1	NM_013941	exon1	c.461delT	p.V154fs	.	.	172.0	52.0	98.0	0.0	.	58	.	.	Atlas-Indel,Pindel
INSRR	3645	hgsc.bcm.edu	hg19	1	156828374	156828381	+	Frame_Shift_Del	DEL	GCAGGCAT	GCAGGCAT	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	GCAGGCAT	GCAGGCAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	INSRR	NM_014215	exon1	c.34_41del	p.12_14del	.	.	350.0	28.0	133.0	0.0	.	309	.	.	Atlas-Indel,Pindel
ADCY2	108	hgsc.bcm.edu	hg19	5	7706898	7706910	+	Frame_Shift_Del	DEL	TGGGCGTGCATTC	TGGGCGTGCATTC	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	TGGGCGTGCATTC	TGGGCGTGCATTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ADCY2	NM_020546	exon8	c.1150_1162del	p.384_388del	.	.	258.0	59.0	227.0	0.0	.	337	.	.	Atlas-Indel,Pindel
FHOD3	80206	hgsc.bcm.edu	hg19	18	34340646	34340647	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	FHOD3	NM_025135	exon23	c.3976_3977insGT	p.E1326fs	.	.	157.0	89.0	85.0	0.0	.	210	.	.	Atlas-Indel,Pindel
UNC13C	440279	hgsc.bcm.edu	hg19	15	54914531	54914531	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	UNC13C	NM_001080534	exon29	c.6112delT	p.S2038fs	.	.	110.0	43.0	90.0	0.0	.	674	.	.	Atlas-Indel,Pindel
ERRFI1	54206	hgsc.bcm.edu	hg19	1	8074333	8074340	+	Frame_Shift_Del	DEL	TCCTCTTC	TCCTCTTC	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	TCCTCTTC	TCCTCTTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ERRFI1	NM_018948	exon4	c.320_327del	p.107_109del	.	.	28.0	15.0	123.0	0.0	.	42	.	.	Atlas-INDEL
ERRFI1	54206	hgsc.bcm.edu	hg19	1	8074342	8074343	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ERRFI1	NM_018948	exon4	c.317_318del	p.106_106del	.	.	26.0	15.0	115.0	0.0	.	42	.	.	Atlas-INDEL
ERRFI1	54206	hgsc.bcm.edu	hg19	1	8074333	8074343	+	Frame_Shift_Del	DEL	TCCTCTTCATG	TCCTCTTCATG	-	novel		TCGA-DD-A4NN-01A-11D-A28X-10	TCGA-DD-A4NN-10A-01D-A28X-10	TCCTCTTCATG	TCCTCTTCATG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	472abc15-0124-4700-8026-8eed68cbcde9	7d51dd41-e8be-488c-bbfe-66156768782f	.	ERRFI1	NM_018948	exon4	c.317_327del	p.106_109del	.	.	29.0	17.0	117.0	0.0	.	42	.	.	Pindel
