Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TNFRSF25	8718	hgsc.bcm.edu	hg19	1	6524732	6524732	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TNFRSF25	NM_148966	exon4	c.T343A	p.C115S	AGCCACAGCGGGT	.	69.0	21.0	94.0	0.0	.	22	.	.	Atlas-SNP
TNFRSF8	943	hgsc.bcm.edu	hg19	1	12183820	12183820	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TNFRSF8	NM_001243	exon10	c.G1089A	p.T363T	TAAGACGCTGCCC	.	77.0	31.0	114.0	0.0	.	70	.	.	Atlas-SNP
CLCNKA	1187	hgsc.bcm.edu	hg19	1	16358337	16358337	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CLCNKA	NM_004070	exon16	c.A1755T	p.T585T	GAGCACAGGTGCC	.	84.0	63.0	129.0	0.0	.	56	.	.	Atlas-SNP
LAPTM5	7805	hgsc.bcm.edu	hg19	1	31210494	31210494	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	LAPTM5	NM_006762	exon6	c.T563A	p.M188K	ATGATCATCATCT	.	46.0	21.0	86.0	0.0	.	30	.	.	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	hg19	1	39823516	39823516	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MACF1	NM_012090	exon41	c.A5708T	p.K1903M	TAGTAAAGGACAA	.	46.0	18.0	66.0	0.0	.	909	.	.	Atlas-SNP
GLIS1	148979	hgsc.bcm.edu	hg19	1	53995547	53995547	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	GLIS1	NM_147193	exon4	c.T874A	p.Y292N	ACAGGTACGGCTT	.	36.0	17.0	50.0	0.0	.	52	.	.	Atlas-SNP
C8B	732	hgsc.bcm.edu	hg19	1	57411614	57411614	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	C8B	NM_000066	exon7	c.A985T	p.S329C	CGTAGCTGTACTC	.	96.0	28.0	162.0	0.0	.	107	.	.	Atlas-SNP
UBE2U	148581	hgsc.bcm.edu	hg19	1	64676461	64676461	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	UBE2U	NM_152489	exon4	c.T278A	p.L93X	ACTTTTTGGACAA	.	264.0	97.0	414.0	0.0	.	16	.	.	Atlas-SNP
C1orf173	127254	hgsc.bcm.edu	hg19	1	75038865	75038865	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	C1orf173	NM_001002912	exon14	c.A2529T	p.A843A	TGCTTCTGCTGCT	.	40.0	22.0	81.0	0.0	.	380	.	.	Atlas-SNP
ZZZ3	26009	hgsc.bcm.edu	hg19	1	78098739	78098739	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ZZZ3	NM_015534	exon5	c.A301T	p.I101L	TTTCTATAGCCTG	.	53.0	16.0	77.0	0.0	.	80	.	.	Atlas-SNP
PTGFR	5737	hgsc.bcm.edu	hg19	1	78958823	78958823	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PTGFR	NM_000959	exon2	c.A395T	p.E132V	CCATTGAGCGGTG	.	89.0	29.0	137.0	0.0	.	121	.	.	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	hg19	1	94508911	94508911	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ABCA4	NM_000350	exon21	c.A3171T	p.E1057D	AGCCTCTTCATTC	.	49.0	24.0	66.0	0.0	.	275	.	.	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	hg19	1	94577058	94577058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ABCA4	NM_000350	exon3	c.C238A	p.P80T	AACAGGGATTGTT	.	75.0	31.0	156.0	0.0	.	275	.	.	Atlas-SNP
KCNA2	3737	hgsc.bcm.edu	hg19	1	111146551	111146551	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	KCNA2	NM_001204269	exon3	c.A854T	p.Q285L	GCCTGCTGGCCTT	.	71.0	30.0	95.0	0.0	.	61	.	.	Atlas-SNP
CD101	9398	hgsc.bcm.edu	hg19	1	117556032	117556032	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CD101	NM_001256109	exon4	c.A846T	p.K282N	AGTGAAAGATTTT	.	52.0	21.0	73.0	0.0	.	95	.	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	144868114	144868114	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	PDE4DIP,pharynx,carcinoma,0,1	PDE4DIP	NM_014644	exon33	c.C5325A	p.A1775A	AGAGTCGGCTTCC	.	194.0	18.0	154.0	0.0	.	817	.	.	Atlas-SNP
ANKRD35	148741	hgsc.bcm.edu	hg19	1	145555806	145555806	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ANKRD35	NM_144698	exon2	c.T154A	p.S52T	CTTGACTCGAATG	.	263.0	68.0	143.0	0.0	.	96	.	.	Atlas-SNP
GJA5	2702	hgsc.bcm.edu	hg19	1	147231300	147231300	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	GJA5	NM_005266	exon2	c.A47T	p.K16M	GAGTGCTTGTGTA	.	113.0	13.0	73.0	0.0	.	64	.	.	Atlas-SNP
PLEKHO1	51177	hgsc.bcm.edu	hg19	1	150123217	150123217	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PLEKHO1	NM_016274	exon2	c.A146T	p.K49I	TGCTGAAAGGGGA	.	444.0	45.0	244.0	0.0	.	37	.	.	Atlas-SNP
HORMAD1	84072	hgsc.bcm.edu	hg19	1	150686584	150686584	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	HORMAD1	NM_001199829	exon5	c.T256A	p.Y86N	CATCATAACATCC	.	905.0	222.0	531.0	0.0	.	59	.	.	Atlas-SNP
ANXA9	8416	hgsc.bcm.edu	hg19	1	150956829	150956829	+	Missense_Mutation	SNP	A	A	T	rs7536645	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ANXA9	NM_003568	exon6	c.A340T	p.T114S	CAGCCCACAGCCC	.	174.0	24.0	106.0	0.0	.	28	.	A|0.978;G|0.022	Atlas-SNP
ANXA9	8416	hgsc.bcm.edu	hg19	1	150957133	150957133	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ANXA9	NM_003568	exon7	c.C453G	p.C151W	GGAGTGCCTGGCA	.	103.0	15.0	47.0	0.0	.	28	.	.	Atlas-SNP
PRUNE	58497	hgsc.bcm.edu	hg19	1	151006513	151006513	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PRUNE	NM_021222	exon8	c.A1165T	p.R389W	TTGGACAGGGCAA	.	258.0	27.0	171.0	0.0	.	40	.	.	Atlas-SNP
PI4KB	5298	hgsc.bcm.edu	hg19	1	151278812	151278812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PI4KB	NM_002651	exon6	c.C1246T	p.L416F	ATTCAAGGACTTC	.	252.0	35.0	113.0	0.0	.	76	.	.	Atlas-SNP
HRNR	388697	hgsc.bcm.edu	hg19	1	152191860	152191860	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	HRNR	NM_001009931	exon3	c.T2245A	p.S749T	TGGAAGACAAACC	.	166.0	19.0	79.0	0.0	.	403	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152283807	152283807	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FLG	NM_002016	exon3	c.A3555T	p.V1185V	TCTATCTACCGAT	.	195.0	21.0	123.0	0.0	.	900	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152285144	152285144	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FLG	NM_002016	exon3	c.C2218G	p.R740G	ACCCTCGGTGTCC	.	124.0	14.0	86.0	0.0	.	900	.	.	Atlas-SNP
S100A3	6274	hgsc.bcm.edu	hg19	1	153520241	153520241	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	S100A3	NM_002960	exon3	c.T223A	p.Y75N	GCACATACTCCAC	.	225.0	39.0	131.0	0.0	.	7	.	.	Atlas-SNP
TPM3	7170	hgsc.bcm.edu	hg19	1	154130187	154130187	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TPM3	NM_153649	exon8	c.A675G	p.K225K	GGTGCATTTCAGT	.	58.0	14.0	44.0	0.0	.	46	.	.	Atlas-SNP
UBAP2L	9898	hgsc.bcm.edu	hg19	1	154226401	154226401	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	UBAP2L	NM_001127320	exon15	c.A1690T	p.N564Y	TCATCTAACCAGA	.	183.0	46.0	101.0	0.0	.	197	.	.	Atlas-SNP
TDRD10	126668	hgsc.bcm.edu	hg19	1	154517399	154517399	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TDRD10	NM_182499	exon11	c.T926A	p.L309Q	CACCCCTGACTCA	.	119.0	14.0	80.0	0.0	.	48	.	.	Atlas-SNP
ADAR	103	hgsc.bcm.edu	hg19	1	154561139	154561139	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ADAR	NM_001111	exon10	c.A2773T	p.S925C	ACTCACTGTAGAG	.	154.0	20.0	94.0	0.0	.	113	.	.	Atlas-SNP
ASH1L	55870	hgsc.bcm.edu	hg19	1	155450303	155450303	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ASH1L	NM_018489	exon3	c.A2358T	p.T786T	TGGAGCTGTGGAT	.	327.0	35.0	208.0	0.0	.	279	.	.	Atlas-SNP
IQGAP3	128239	hgsc.bcm.edu	hg19	1	156517962	156517962	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	IQGAP3	NM_178229	exon19	c.A2207T	p.Q736L	TGGAGCTGGATAA	.	188.0	33.0	92.0	0.0	.	146	.	.	Atlas-SNP
BCAN	63827	hgsc.bcm.edu	hg19	1	156617431	156617431	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	BCAN	NM_198427	exon4	c.T598A	p.Y200N	GGGGGCTATGAGC	.	51.0	6.0	28.0	0.0	.	174	.	.	Atlas-SNP
ARHGEF11	9826	hgsc.bcm.edu	hg19	1	156939079	156939079	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ARHGEF11	NM_198236	exon10	c.A820T	p.S274C	CCTCACTGAGGGA	.	179.0	18.0	105.0	0.0	.	168	.	.	Atlas-SNP
CD5L	922	hgsc.bcm.edu	hg19	1	157804379	157804379	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CD5L	NM_005894	exon4	c.T536A	p.L179Q	CATCCCAGCTGCC	.	121.0	42.0	47.0	0.0	.	112	.	.	Atlas-SNP
OR6P1	128366	hgsc.bcm.edu	hg19	1	158532685	158532685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OR6P1	NM_001160325	exon1	c.C710T	p.A237V	GAAAAGGCTTTGT	.	187.0	58.0	82.0	0.0	.	47	.	.	Atlas-SNP
FCRLB	127943	hgsc.bcm.edu	hg19	1	161693276	161693276	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FCRLB	NM_001002901	exon3	c.A172T	p.S58C	CCCATCAGCACTC	.	283.0	40.0	153.0	0.0	.	35	.	.	Atlas-SNP
ILDR2	387597	hgsc.bcm.edu	hg19	1	166927035	166927035	+	Missense_Mutation	SNP	T	T	A	rs138041277	alternate_allele	TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ILDR2	NM_199351	exon2	c.A350T	p.Y117F	CCCCTGTAGAAAT	.	172.0	24.0	101.0	0.0	.	79	.	T|1.000;C|0.000	Atlas-SNP
NME7	29922	hgsc.bcm.edu	hg19	1	169200018	169200018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	NME7	NM_013330	exon10	c.A928G	p.M310V	TCTCCATTGCTAC	.	949.0	117.0	455.0	0.0	.	34	.	.	Atlas-SNP
MROH9	80133	hgsc.bcm.edu	hg19	1	170916672	170916672	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_025063	exon3	c.T30A	p.S10R	AGAGAGTAGTCTC	.	190.0	35.0	104.0	0.0	.	.	.	.	Atlas-SNP
PIGC	5279	hgsc.bcm.edu	hg19	1	172411330	172411330	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PIGC	NM_153747	exon2	c.A433T	p.S145C	CAGTGCTGACAGA	.	252.0	38.0	153.0	0.0	.	24	.	.	Atlas-SNP
RC3H1	149041	hgsc.bcm.edu	hg19	1	173934198	173934198	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	RC3H1	NM_172071	exon9	c.A1395T	p.Q465H	ATTAAGTTGACCC	.	230.0	27.0	111.0	0.0	.	110	.	.	Atlas-SNP
NPHS2	7827	hgsc.bcm.edu	hg19	1	179530443	179530443	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	NPHS2	NM_014625	exon3	c.T432A	p.P144P	TCTTCCAGGAAGC	.	489.0	74.0	245.0	0.0	.	46	.	.	Atlas-SNP
RGSL1	353299	hgsc.bcm.edu	hg19	1	182443327	182443327	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	RGSL1	NM_001137669	exon6	c.A1081T	p.I361F	AAGGCCATCAAGC	.	282.0	33.0	154.0	0.0	.	111	.	.	Atlas-SNP
DHX9	1660	hgsc.bcm.edu	hg19	1	182836162	182836162	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DHX9	NM_001357	exon14	c.A1541T	p.H514L	AAATACATGAAAG	.	169.0	23.0	68.0	0.0	.	114	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186034407	186034407	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	HMCN1	NM_031935	exon49	c.G7551T	p.G2517G	AGATGGGCAGCCC	.	131.0	24.0	60.0	0.0	.	797	.	.	Atlas-SNP
PRG4	10216	hgsc.bcm.edu	hg19	1	186275482	186275482	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PRG4	NM_005807	exon7	c.A631C	p.K211Q	AAAAAGAAACCTA	.	245.0	32.0	142.0	0.0	.	259	.	.	Atlas-SNP
PTGS2	5743	hgsc.bcm.edu	hg19	1	186644523	186644523	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PTGS2	NM_000963	exon9	c.T1263A	p.A421A	ACCACCAGCAACC	.	280.0	34.0	115.0	0.0	.	144	.	.	Atlas-SNP
FAM5C	339479	hgsc.bcm.edu	hg19	1	190068155	190068155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FAM5C	NM_199051	exon8	c.C1294A	p.Q432K	CCACCTGGTCATT	.	257.0	37.0	180.0	0.0	.	343	.	.	Atlas-SNP
RGS2	5997	hgsc.bcm.edu	hg19	1	192778220	192778220	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	RGS2	NM_002923	exon1	c.T19A	p.L7M	ATGTTCTTGGCTG	.	798.0	117.0	430.0	0.0	.	19	.	.	Atlas-SNP
ZBTB41	360023	hgsc.bcm.edu	hg19	1	197169358	197169358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ZBTB41	NM_194314	exon1	c.G246T	p.Q82H	TTGCTTCTGCCTA	.	150.0	14.0	68.0	0.0	.	116	.	.	Atlas-SNP
CRB1	23418	hgsc.bcm.edu	hg19	1	197403940	197403940	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CRB1	NM_201253	exon9	c.A2947T	p.R983W	AGAACAAGGGATG	.	329.0	56.0	195.0	0.0	.	284	.	.	Atlas-SNP
CAMSAP2	23271	hgsc.bcm.edu	hg19	1	200818090	200818090	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_203459	exon11	c.A2193T	p.P731P	AATTCCAGAAGAA	.	370.0	57.0	190.0	0.0	.	.	.	.	Atlas-SNP
NFASC	23114	hgsc.bcm.edu	hg19	1	204945893	204945893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	NFASC_ENST00000403080,caecum,carcinoma,0,3	NFASC	NM_015090	exon16	c.G1834T	p.D612Y	GACCAAGACCTGG	.	194.0	35.0	99.0	0.0	.	396	.	.	Atlas-SNP
LEMD1	93273	hgsc.bcm.edu	hg19	1	205353472	205353472	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	LEMD1	NM_001199050	exon5	c.T291A	p.T97T	GCGTTTAGTGGTG	.	192.0	31.0	94.0	0.0	.	21	.	.	Atlas-SNP
SLC26A9	115019	hgsc.bcm.edu	hg19	1	205898402	205898402	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SLC26A9	NM_134325	exon7	c.T800A	p.V267E	ACCAGCACCAGGA	.	222.0	130.0	134.0	0.0	.	176	.	.	Atlas-SNP
CR1	1378	hgsc.bcm.edu	hg19	1	207753643	207753643	+	Missense_Mutation	SNP	C	C	G	rs141954836	bycluster;by1000genomes;alternate_allele	TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CR1	NM_000651	exon30	c.C4995G	p.N1665K	GGACAACTTTTCA	.	268.0	36.0	152.0	0.0	.	354	.	C|0.999;A|0.001	Atlas-SNP
VASH2	79805	hgsc.bcm.edu	hg19	1	213146157	213146157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	VASH2	NM_024749	exon4	c.A601G	p.K201E	GTCAAGAAGGTCA	.	142.0	10.0	99.0	0.0	.	55	.	.	Atlas-SNP
KCNK2	3776	hgsc.bcm.edu	hg19	1	215408460	215408460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	KCNK2	NM_001017425	exon7	c.A1253G	p.E418G	GTGAAGAGATTGC	.	76.0	6.0	42.0	0.0	.	135	.	.	Atlas-SNP
BPNT1	10380	hgsc.bcm.edu	hg19	1	220253130	220253130	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	BPNT1	NM_006085	exon2	c.A59T	p.Q20L	GCCTTTTGAGCAA	.	240.0	21.0	132.0	0.0	.	29	.	.	Atlas-SNP
MIA3	375056	hgsc.bcm.edu	hg19	1	222801852	222801852	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MIA3	NM_198551	exon4	c.A1290T	p.S430S	ACAGTCAGCAACA	.	578.0	78.0	298.0	0.0	.	167	.	.	Atlas-SNP
WNT3A	89780	hgsc.bcm.edu	hg19	1	228246857	228246857	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	WNT3A	NM_033131	exon4	c.C750T	p.R250R	GTCCCGCGGCTGG	.	187.0	17.0	117.0	0.0	.	40	.	.	Atlas-SNP
GJC2	57165	hgsc.bcm.edu	hg19	1	228345591	228345591	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	GJC2	NM_020435	exon2	c.G132C	p.E44D	CGGCGAGGCCATC	.	434.0	53.0	255.0	0.0	.	20	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228521428	228521428	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OBSCN	NM_001271223	exon70	c.A18872T	p.Y6291F	CAGCCTATATCAG	.	127.0	17.0	89.0	0.0	.	2142	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228552712	228552712	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OBSCN	NM_001271223	exon92	c.T21743A	p.L7248H	CCCTCCTCCACGA	.	574.0	70.0	321.0	0.0	.	2142	.	.	Atlas-SNP
TRIM67	440730	hgsc.bcm.edu	hg19	1	231299389	231299389	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TRIM67	NM_001004342	exon1	c.A674T	p.Q225L	GCGAGCAGTGCGA	.	68.0	10.0	39.0	0.0	.	160	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237551411	237551411	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	RYR2	NM_001035	exon10	c.T701A	p.L234H	ATGTCCTCAGGTT	.	153.0	18.0	80.0	0.0	.	1273	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237823356	237823356	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	RYR2	NM_001035	exon55	c.T8280A	p.Y2760X	GCCATATAAGCTA	.	173.0	21.0	90.0	0.0	.	1273	.	.	Atlas-SNP
WDR64	128025	hgsc.bcm.edu	hg19	1	241904820	241904820	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	WDR64	NM_144625	exon11	c.T1294A	p.S432T	CCAGGATCTAGTG	.	120.0	26.0	66.0	0.0	.	234	.	.	Atlas-SNP
OR2L2	26246	hgsc.bcm.edu	hg19	1	248202345	248202345	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OR2L2	NM_001004686	exon1	c.T776A	p.V259E	CCTATGTACGTCC	.	187.0	25.0	90.0	0.0	.	115	.	.	Atlas-SNP
OR2M7	391196	hgsc.bcm.edu	hg19	1	248487043	248487043	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OR2M7	NM_001004691	exon1	c.A828G	p.V276V	GTAGAATACAGAC	.	267.0	35.0	147.0	0.0	.	84	.	.	Atlas-SNP
OR14I1	401994	hgsc.bcm.edu	hg19	1	248845007	248845007	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OR14I1	NM_001004734	exon1	c.T599A	p.L200Q	GAGCTCAGGGCCA	.	274.0	31.0	158.0	0.0	.	64	.	.	Atlas-SNP
TSSC1	7260	hgsc.bcm.edu	hg19	2	3358335	3358335	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TSSC1	NM_003310	exon2	c.A112T	p.K38X	CATATTTAAGAGA	.	209.0	59.0	273.0	0.0	.	39	.	.	Atlas-SNP
MATN3	4148	hgsc.bcm.edu	hg19	2	20212202	20212202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MATN3	NM_002381	exon1	c.G191A	p.G64E	CTGGTCCCGGAAG	.	176.0	116.0	227.0	0.0	.	28	.	.	Atlas-SNP
RHOB	388	hgsc.bcm.edu	hg19	2	20647467	20647467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	RHOB	NM_004040	exon1	c.C241T	p.L81F	GTCATTCTCATGT	.	151.0	36.0	166.0	0.0	.	18	.	.	Atlas-SNP
ATRAID	51374	hgsc.bcm.edu	hg19	2	27438566	27438566	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_080592	exon5	c.A597T	p.I199I	TTATATAGACAAC	.	138.0	42.0	172.0	0.0	.	.	.	.	Atlas-SNP
CAPN13	92291	hgsc.bcm.edu	hg19	2	30966407	30966407	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CAPN13	NM_144575	exon13	c.G1287A	p.S429S	TCTGAACGAGGAA	.	91.0	25.0	99.0	0.0	.	70	.	.	Atlas-SNP
XDH	7498	hgsc.bcm.edu	hg19	2	31606664	31606664	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	XDH	NM_000379	exon10	c.A843T	p.P281P	CCAGGCTGGGCAG	.	85.0	32.0	98.0	0.0	.	191	.	.	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32661167	32661167	+	Silent	SNP	A	A	T	rs188040071	bycluster;by1000genomes;alternate_allele	TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	BIRC6	NM_016252	exon15	c.A3546T	p.L1182L	CATTCTATGTGGG	.	82.0	25.0	82.0	0.0	.	838	.	A|1.000;G|0.000	Atlas-SNP
TTC27	55622	hgsc.bcm.edu	hg19	2	32858993	32858993	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TTC27	NM_017735	exon3	c.A317T	p.Q106L	TTGTTCAGAGCAA	.	71.0	17.0	97.0	0.0	.	71	.	.	Atlas-SNP
KCNG3	170850	hgsc.bcm.edu	hg19	2	42720359	42720359	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	KCNG3	NM_172344	exon1	c.T283A	p.Y95N	CGTTGTAGAAGGA	.	45.0	13.0	82.0	0.0	.	19	.	.	Atlas-SNP
SPTBN1	6711	hgsc.bcm.edu	hg19	2	54891657	54891657	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SPTBN1	NM_003128	exon33	c.A6488T	p.E2163V	CTAAAGAGTCCAG	.	135.0	39.0	123.0	0.0	.	378	.	.	Atlas-SNP
GFPT1	2673	hgsc.bcm.edu	hg19	2	69585596	69585596	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	GFPT1	NM_002056	exon7	c.409-1G>A	.	GCTTTCCTGTAAG	.	30.0	9.0	56.0	0.0	.	38	.	.	Atlas-SNP
ZNF638	27332	hgsc.bcm.edu	hg19	2	71661921	71661921	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ZNF638	NM_014497	exon28	c.A5921T	p.E1974V	CTGAAGAAAGAAG	.	373.0	91.0	473.0	0.0	.	179	.	.	Atlas-SNP
M1AP	130951	hgsc.bcm.edu	hg19	2	74867347	74867347	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_138804	exon2	c.A56T	p.Q19L	GGTTGCTGGTCAA	.	110.0	23.0	167.0	0.0	.	.	.	.	Atlas-SNP
POLR1A	25885	hgsc.bcm.edu	hg19	2	86305011	86305011	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	POLR1A	NM_015425	exon11	c.A1351T	p.I451F	TGTTGATGTACAT	.	37.0	7.0	52.0	0.0	.	137	.	.	Atlas-SNP
CNGA3	1261	hgsc.bcm.edu	hg19	2	99006230	99006230	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CNGA3	NM_001298	exon6	c.A559C	p.I187L	CTGCTTATTTGCA	.	51.0	14.0	78.0	0.0	.	118	.	.	Atlas-SNP
IL18RAP	8807	hgsc.bcm.edu	hg19	2	103061692	103061692	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	IL18RAP	NM_003853	exon9	c.A964T	p.I322F	AATATCATCTTGG	.	112.0	26.0	119.0	0.0	.	102	.	.	Atlas-SNP
SLC9A4	389015	hgsc.bcm.edu	hg19	2	103148873	103148873	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SLC9A4	NM_001011552	exon12	c.A2123T	p.Q708L	AGGCACAAGAAAT	.	86.0	20.0	118.0	0.0	.	115	.	.	Atlas-SNP
RANBP2	5903	hgsc.bcm.edu	hg19	2	109347864	109347864	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	RANBP2	NM_006267	exon4	c.A339T	p.R113S	TGGAAGAGCAAAA	.	764.0	185.0	909.0	0.0	.	488	.	.	Atlas-SNP
SH3RF3	344558	hgsc.bcm.edu	hg19	2	109964388	109964388	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SH3RF3	NM_001099289	exon2	c.T832A	p.C278S	AAGGACTGTCTGA	.	68.0	12.0	100.0	0.0	.	62	.	.	Atlas-SNP
PAX8	7849	hgsc.bcm.edu	hg19	2	114004421	114004421	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PAX8	NM_013952	exon3	c.T101A	p.I34N	TCTACGATGCGCT	.	126.0	29.0	139.0	0.0	.	42	.	.	Atlas-SNP
IWS1	55677	hgsc.bcm.edu	hg19	2	128249661	128249661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	IWS1	NM_017969	exon10	c.C1933T	p.P645S	CACTAGGCAGCTG	.	97.0	24.0	102.0	0.0	.	61	.	.	Atlas-SNP
SAP130	79595	hgsc.bcm.edu	hg19	2	128747139	128747139	+	Silent	SNP	T	T	A	rs372682996	alternate_allele	TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SAP130	NM_001145928	exon13	c.A1857T	p.S619S	ATTACCTGAAGTC	.	101.0	33.0	134.0	0.0	.	169	.	.	Atlas-SNP
MCM6	4175	hgsc.bcm.edu	hg19	2	136609093	136609093	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MCM6	NM_005915	exon13	c.A1796T	p.K599I	AGATGTTTATATT	.	42.0	10.0	61.0	0.0	.	64	.	.	Atlas-SNP
NOSTRIN	115677	hgsc.bcm.edu	hg19	2	169688005	169688005	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	NOSTRIN	NM_001039724	exon6	c.A366T	p.T122T	AAAGACAGCAAAT	.	238.0	53.0	253.0	0.0	.	68	.	.	Atlas-SNP
BBS5	129880	hgsc.bcm.edu	hg19	2	170355994	170355994	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	BBS5	NM_152384	exon9	c.682-2A>T	.	TCTTGTAGAGTGG	.	186.0	59.0	214.0	0.0	.	27	.	.	Atlas-SNP
DCAF17	80067	hgsc.bcm.edu	hg19	2	172300031	172300031	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DCAF17	NM_025000	exon3	c.231-2A>T	.	TTTCCCAGTGTTG	.	41.0	12.0	41.0	0.0	.	41	.	.	Atlas-SNP
WIPF1	7456	hgsc.bcm.edu	hg19	2	175432711	175432711	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	WIPF1	NM_003387	exon6	c.T1220A	p.V407E	CTGTCTACTCCAC	.	64.0	20.0	101.0	0.0	.	88	.	.	Atlas-SNP
ATF2	1386	hgsc.bcm.edu	hg19	2	175939359	175939359	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ATF2	NM_001880	exon14	c.A1496T	p.Q499L	TGTGACTGGGAGG	.	112.0	29.0	102.0	0.0	.	52	.	.	Atlas-SNP
NFE2L2	4780	hgsc.bcm.edu	hg19	2	178098800	178098800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	NFE2L2,NS,carcinoma,+1,7	NFE2L2	NM_006164	exon2	c.A245G	p.E82G	AGAAATTCACCTG	.	56.0	28.0	67.0	0.0	.	225	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179417476	179417476	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TTN	NM_001267550	exon335	c.T90151A	p.W30051R	TGGTCCAGCTGAG	.	119.0	39.0	130.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179439715	179439715	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TTN	NM_001267550	exon326	c.T71144A	p.V23715D	TCACCAACCTCTC	.	108.0	39.0	90.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179575489	179575489	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TTN	NM_001267550	exon98	c.T28335A	p.I9445I	ATAACTAATCTGG	.	90.0	24.0	97.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179612800	179612800	+	Nonsense_Mutation	SNP	A	A	T	rs142132973	bycluster;alternate_allele	TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	TTN_ENST00000360870,NS,lymphoid_neoplasm,0,1	TTN	NM_133379	exon46	c.T14327A	p.L4776X	ACCCCTAAAGGCT	.	82.0	23.0	77.0	0.0	.	18412	.	A|0.999;G|0.001	Atlas-SNP
FAM171B	165215	hgsc.bcm.edu	hg19	2	187605125	187605125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FAM171B	NM_177454	exon2	c.A409G	p.I137V	TTAACTATTATTG	.	159.0	35.0	179.0	0.0	.	146	.	.	Atlas-SNP
COL3A1	1281	hgsc.bcm.edu	hg19	2	189870090	189870090	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	COL3A1	NM_000090	exon41	c.A2946T	p.K982N	TGGGAAACCAGGA	.	105.0	24.0	117.0	0.0	.	292	.	.	Atlas-SNP
FZD7	8324	hgsc.bcm.edu	hg19	2	202900427	202900427	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FZD7	NM_003507	exon1	c.T1057A	p.W353R	TCCATCTGGTGGG	.	98.0	26.0	84.0	0.0	.	70	.	.	Atlas-SNP
FZD7	8324	hgsc.bcm.edu	hg19	2	202900508	202900508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FZD7	NM_003507	exon1	c.T1138A	p.Y380N	TCGCAGTACTTCC	.	70.0	12.0	85.0	0.0	.	70	.	.	Atlas-SNP
ICOS	29851	hgsc.bcm.edu	hg19	2	204820588	204820588	+	Silent	SNP	A	A	G	rs372256111		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ICOS	NM_012092	exon2	c.A288G	p.L96L	TTTTCTATACAAC	.	168.0	48.0	171.0	0.0	.	20	.	.	Atlas-SNP
ADAM23	8745	hgsc.bcm.edu	hg19	2	207436449	207436449	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ADAM23	NM_003812	exon17	c.1567-2A>T	.	TTCTCTAGGAATG	.	55.0	17.0	86.0	0.0	.	239	.	.	Atlas-SNP
MAP2	4133	hgsc.bcm.edu	hg19	2	210559831	210559831	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MAP2	NM_002374	exon7	c.A2937T	p.K979N	CAAGAAAACTGAA	.	305.0	82.0	335.0	0.0	.	372	.	.	Atlas-SNP
VWC2L	402117	hgsc.bcm.edu	hg19	2	215440464	215440464	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	VWC2L	NM_001080500	exon4	c.A589T	p.I197F	TGTAACATCTGTC	.	97.0	31.0	122.0	0.0	.	40	.	.	Atlas-SNP
TRIP12	9320	hgsc.bcm.edu	hg19	2	230638852	230638852	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TRIP12	NM_004238	exon37	c.T5430C	p.D1810D	TGGTATATCCTTC	.	87.0	26.0	86.0	0.0	.	207	.	.	Atlas-SNP
ALPP	250	hgsc.bcm.edu	hg19	2	233244624	233244624	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ALPP	NM_001632	exon5	c.T635A	p.L212H	CGCAGCTCATCTC	.	180.0	50.0	249.0	0.0	.	53	.	.	Atlas-SNP
PDCD6IP	10015	hgsc.bcm.edu	hg19	3	33840379	33840379	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PDCD6IP	NM_013374	exon1	c.A159T	p.A53A	CGCCGCAGTCGGT	.	135.0	40.0	144.0	0.0	.	62	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266103	41266103	+	Missense_Mutation	SNP	G	G	C	rs121913399	alternate_allele	TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	CTNNB1,gallbladder,other,-1,1	CTNNB1	NM_001098209	exon3	c.G100C	p.G34R	GACTCTGGAATCC	.	126.0	42.0	151.0	0.0	.	4904	.	.	Atlas-SNP
HHATL	57467	hgsc.bcm.edu	hg19	3	42735312	42735312	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	HHATL	NM_020707	exon11	c.1047-2A>T	.	CATATCTGCAGGA	.	76.0	23.0	76.0	0.0	.	49	.	.	Atlas-SNP
CCDC13	152206	hgsc.bcm.edu	hg19	3	42751273	42751273	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CCDC13	NM_144719	exon15	c.A1891T	p.N631Y	GCCTGTTGTTAGA	.	88.0	23.0	94.0	0.0	.	71	.	.	Atlas-SNP
ZNF197	10168	hgsc.bcm.edu	hg19	3	44685446	44685446	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ZNF197	NM_006991	exon6	c.A2824T	p.K942X	ACTTCTAAGAGGA	.	190.0	52.0	208.0	0.0	.	81	.	.	Atlas-SNP
PLXNB1	5364	hgsc.bcm.edu	hg19	3	48455080	48455080	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PLXNB1	NM_001130082	exon23	c.A4534T	p.R1512W	CCCACCTGTACAT	.	89.0	28.0	100.0	0.0	.	150	.	.	Atlas-SNP
CELSR3	1951	hgsc.bcm.edu	hg19	3	48685300	48685300	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CELSR3	NM_001407	exon20	c.A7103T	p.Q2368L	GGGGACTGGGAAG	.	38.0	9.0	34.0	0.0	.	237	.	.	Atlas-SNP
ARIH2	10425	hgsc.bcm.edu	hg19	3	49006053	49006053	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ARIH2	NM_006321	exon7	c.A625C	p.K209Q	AGAGAGAAATACA	.	51.0	12.0	67.0	0.0	.	32	.	.	Atlas-SNP
QRICH1	54870	hgsc.bcm.edu	hg19	3	49070097	49070097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	QRICH1	NM_198880	exon8	c.C2005T	p.R669W	AGTACCGGATACT	.	73.0	5.0	79.0	0.0	.	48	.	.	Atlas-SNP
DAG1	1605	hgsc.bcm.edu	hg19	3	49570032	49570032	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DAG1	NM_001177642	exon4	c.A2088T	p.L696L	CGCCCTAGAGCCT	.	94.0	23.0	86.0	0.0	.	60	.	.	Atlas-SNP
DOCK3	1795	hgsc.bcm.edu	hg19	3	51264732	51264732	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DOCK3	NM_004947	exon16	c.T1396A	p.S466T	TTGGGTTCAGGAG	.	55.0	18.0	80.0	0.0	.	397	.	.	Atlas-SNP
TKT	7086	hgsc.bcm.edu	hg19	3	53263101	53263101	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TKT	NM_001258028	exon11	c.A1341T	p.S447S	GGGGACTGACCGA	.	95.0	20.0	115.0	0.0	.	38	.	.	Atlas-SNP
FLNB	2317	hgsc.bcm.edu	hg19	3	58112352	58112352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FLNB	NM_001457	exon24	c.G4085T	p.G1362V	GGCTTGGCATAAC	.	170.0	89.0	182.0	0.0	.	430	.	.	Atlas-SNP
ATXN7	6314	hgsc.bcm.edu	hg19	3	63973873	63973873	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ATXN7	NM_000333	exon9	c.A1234T	p.R412W	CCTCTCAGGGACC	.	145.0	39.0	177.0	0.0	.	126	.	.	Atlas-SNP
MINA	84864	hgsc.bcm.edu	hg19	3	97686360	97686360	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MINA	NM_001261829	exon2	c.A78T	p.A26A	CCCAGCTGCTTCT	.	67.0	13.0	58.0	0.0	.	39	.	.	Atlas-SNP
OR5K2	402135	hgsc.bcm.edu	hg19	3	98216964	98216964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OR5K2	NM_001004737	exon1	c.G440A	p.G147D	CCACAGGCGCCTT	.	126.0	37.0	124.0	0.0	.	56	.	.	Atlas-SNP
ALCAM	214	hgsc.bcm.edu	hg19	3	105266289	105266289	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ALCAM	NM_001627	exon11	c.A1296T	p.T432T	TAAAACAATAATC	.	302.0	80.0	339.0	0.0	.	71	.	.	Atlas-SNP
ATG3	64422	hgsc.bcm.edu	hg19	3	112262916	112262916	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ATG3	NM_022488	exon6	c.A381T	p.T127T	TTCCAGTGTGATC	.	400.0	114.0	449.0	1.0	.	23	.	.	Atlas-SNP
CCDC80	151887	hgsc.bcm.edu	hg19	3	112357260	112357260	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CCDC80	NM_199511	exon2	c.A1493T	p.Q498L	TTGTCCTGGGCCT	.	73.0	21.0	90.0	0.0	.	100	.	.	Atlas-SNP
POLQ	10721	hgsc.bcm.edu	hg19	3	121186434	121186434	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	POLQ	NM_199420	exon24	c.A6899T	p.E2300V	CTCTCCTCCATCT	.	95.0	34.0	110.0	0.0	.	273	.	.	Atlas-SNP
POLQ	10721	hgsc.bcm.edu	hg19	3	121256056	121256056	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	POLQ	NM_199420	exon6	c.632-1G>C	.	CCATTCCTAAAAA	.	195.0	99.0	222.0	0.0	.	273	.	.	Atlas-SNP
CASR	846	hgsc.bcm.edu	hg19	3	121981126	121981126	+	Missense_Mutation	SNP	G	G	A	rs193922421		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CASR	NM_001178065	exon4	c.G1244A	p.R415Q	ATTTACGGATATC	.	74.0	13.0	72.0	0.0	.	190	.	.	Atlas-SNP
TPRA1	131601	hgsc.bcm.edu	hg19	3	127295719	127295719	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TPRA1	NM_001142646	exon5	c.C363T	p.T121T	GAAGCGGGTGATC	.	191.0	41.0	245.0	0.0	.	21	.	.	Atlas-SNP
KBTBD12	166348	hgsc.bcm.edu	hg19	3	127703119	127703119	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	KBTBD12	NM_207335	exon5	c.T1870A	p.X624K	GAGCACTAAGGTG	.	86.0	24.0	107.0	0.0	.	41	.	.	Atlas-SNP
KIAA1257	57501	hgsc.bcm.edu	hg19	3	128696958	128696958	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	KIAA1257	NM_020741	exon5	c.A738T	p.R246S	CTCTTCTCTGACA	.	105.0	28.0	104.0	0.0	.	33	.	.	Atlas-SNP
TMCC1	23023	hgsc.bcm.edu	hg19	3	129373861	129373861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TMCC1	NM_001017395	exon5	c.A1597G	p.M533V	CTTCCATGCTTGC	.	97.0	30.0	116.0	0.0	.	105	.	.	Atlas-SNP
ARMC8	25852	hgsc.bcm.edu	hg19	3	138007891	138007891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ARMC8	NM_015396	exon21	c.G1781T	p.G594V	AATAGGGCCATTC	.	265.0	145.0	255.0	0.0	.	79	.	.	Atlas-SNP
ESYT3	83850	hgsc.bcm.edu	hg19	3	138180931	138180931	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ESYT3	NM_031913	exon8	c.T798A	p.D266E	CAGTGATGTGTCA	.	43.0	11.0	63.0	0.0	.	64	.	.	Atlas-SNP
SPSB4	92369	hgsc.bcm.edu	hg19	3	140785482	140785482	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SPSB4	NM_080862	exon2	c.T536A	p.V179E	TGCTCGTGGTGCT	.	98.0	17.0	137.0	0.0	.	19	.	.	Atlas-SNP
ATR	545	hgsc.bcm.edu	hg19	3	142188239	142188239	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ATR	NM_001184	exon38	c.A6492T	p.I2164I	TTTGGCTATTATT	.	194.0	50.0	225.0	0.0	.	285	.	.	Atlas-SNP
ATR	545	hgsc.bcm.edu	hg19	3	142278251	142278251	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ATR	NM_001184	exon7	c.A1574T	p.K525M	TTCTTCTTGGATT	.	117.0	31.0	155.0	0.0	.	285	.	.	Atlas-SNP
CLRN1	7401	hgsc.bcm.edu	hg19	3	150690482	150690482	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CLRN1	NM_001256819	exon1	c.A14T	p.Q5L	TTCTTCTGTTGGC	.	81.0	21.0	82.0	0.0	.	44	.	.	Atlas-SNP
OTOL1	131149	hgsc.bcm.edu	hg19	3	161221107	161221107	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OTOL1	NM_001080440	exon4	c.A811T	p.S271C	GGAGACAGTGGAA	.	299.0	81.0	331.0	0.0	.	63	.	.	Atlas-SNP
MECOM	2122	hgsc.bcm.edu	hg19	3	168834399	168834399	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MECOM	NM_004991	exon8	c.A1261T	p.N421Y	GTTTATTTAAGGA	.	117.0	41.0	140.0	0.0	.	216	.	.	Atlas-SNP
PLD1	5337	hgsc.bcm.edu	hg19	3	171443814	171443814	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PLD1	NM_002662	exon7	c.A659T	p.K220M	ATGCCCTTTGGTC	.	84.0	21.0	82.0	0.0	.	134	.	.	Atlas-SNP
EPHB3	2049	hgsc.bcm.edu	hg19	3	184290454	184290454	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	EPHB3,NS,carcinoma,0,1	EPHB3	NM_004443	exon3	c.T346A	p.C116S	CGTGACTGCAACA	.	98.0	28.0	107.0	0.0	.	114	.	.	Atlas-SNP
IGF2BP2	10644	hgsc.bcm.edu	hg19	3	185390424	185390424	+	Missense_Mutation	SNP	T	T	A	rs368787882	alternate_allele	TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	IGF2BP2	NM_006548	exon10	c.A1105T	p.S369C	GTGCGCTGAGGTT	.	429.0	111.0	520.0	0.0	.	69	.	.	Atlas-SNP
ETV5	2119	hgsc.bcm.edu	hg19	3	185797835	185797835	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ETV5	NM_004454	exon7	c.C421G	p.L141V	GTGAGAGGGGGGT	.	91.0	31.0	68.0	0.0	.	106	.	.	Atlas-SNP
KNG1	3827	hgsc.bcm.edu	hg19	3	186459911	186459911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	KNG1	NM_001102416	exon10	c.A1726G	p.I576V	CCTCCTATATCAC	.	118.0	27.0	156.0	0.0	.	129	.	.	Atlas-SNP
XXYLT1	152002	hgsc.bcm.edu	hg19	3	194877312	194877312	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_152531	exon4	c.653-2A>T	.	GATCTCTGCGGGA	.	46.0	11.0	83.0	0.0	.	.	.	.	Atlas-SNP
RGS12	6002	hgsc.bcm.edu	hg19	4	3424630	3424630	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	RGS12	NM_002926	exon12	c.3034-2A>T	.	TTCCTCAGCCTCT	.	24.0	11.0	51.0	0.0	.	128	.	.	Atlas-SNP
STK32B	55351	hgsc.bcm.edu	hg19	4	5500757	5500757	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	STK32B,mouth,carcinoma,0,1	STK32B	NM_018401	exon12	c.G1192C	p.G398R	CAGGACGGGTGCA	.	191.0	67.0	301.0	1.0	.	87	.	.	Atlas-SNP
TBC1D14	57533	hgsc.bcm.edu	hg19	4	6925360	6925360	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TBC1D14	NM_001113361	exon2	c.A244T	p.S82C	CCCTGCAGCGCGG	.	82.0	39.0	171.0	0.0	.	110	.	.	Atlas-SNP
LRRC66	339977	hgsc.bcm.edu	hg19	4	52860981	52860981	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	LRRC66	NM_001024611	exon4	c.A2207T	p.Q736L	TCGTCCTGCAGGG	.	63.0	23.0	77.0	0.0	.	128	.	.	Atlas-SNP
CENPC1	1060	hgsc.bcm.edu	hg19	4	68357970	68357970	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CENPC1	NM_001812	exon16	c.G2443C	p.G815R	GTATACCTAGATT	.	46.0	23.0	81.0	0.0	.	66	.	.	Atlas-SNP
NPFFR2	10886	hgsc.bcm.edu	hg19	4	72994540	72994540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	NPFFR2	NM_004885	exon2	c.A538G	p.T180A	ATGCACACAGTCA	.	47.0	18.0	132.0	0.0	.	98	.	.	Atlas-SNP
ADAMTS3	9508	hgsc.bcm.edu	hg19	4	73181644	73181644	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ADAMTS3	NM_014243	exon11	c.T1530A	p.P510P	ATTATCAGGATGG	.	88.0	30.0	153.0	0.0	.	164	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79366793	79366793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FRAS1	NM_001166133	exon42	c.A5783G	p.H1928R	CAACCCATGATAT	.	52.0	20.0	103.0	0.0	.	779	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79455718	79455718	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FRAS1	NM_025074	exon71	c.A11041T	p.T3681S	CCCAATACATCTG	.	42.0	17.0	75.0	0.0	.	779	.	.	Atlas-SNP
PTPN13	5783	hgsc.bcm.edu	hg19	4	87638220	87638220	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PTPN13	NM_006264	exon9	c.T1335A	p.G445G	CAGTGGTCTCCCA	.	48.0	22.0	78.0	0.0	.	203	.	.	Atlas-SNP
CCSER1	401145	hgsc.bcm.edu	hg19	4	92519745	92519745	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_001145065	exon11	c.T2240A	p.V747E	GAATTGTGAGCCA	.	118.0	48.0	175.0	0.0	.	.	.	.	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	hg19	4	104061192	104061192	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CENPE	NM_001813	exon38	c.A5958T	p.K1986N	ATCTTCTTTCACT	.	59.0	22.0	94.0	0.0	.	253	.	.	Atlas-SNP
TACR3	6870	hgsc.bcm.edu	hg19	4	104511135	104511135	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	TACR3,rectum,carcinoma,+1,1	TACR3	NM_001059	exon5	c.A1102T	p.K368X	CTCTCTTGAAGCC	.	72.0	29.0	109.0	0.0	.	102	.	.	Atlas-SNP
EGF	1950	hgsc.bcm.edu	hg19	4	110915949	110915949	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	EGF	NM_001963	exon20	c.A2918C	p.D973A	ATAGTGACTCTGA	.	54.0	16.0	70.0	0.0	.	113	.	.	Atlas-SNP
PDE5A	8654	hgsc.bcm.edu	hg19	4	120463621	120463621	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PDE5A	NM_001083	exon10	c.C1565A	p.T522K	TCCAATGTGACCA	.	87.0	29.0	145.0	0.0	.	83	.	.	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123246433	123246433	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	KIAA1109	NM_015312	exon63	c.A10953T	p.A3651A	GGATGCAGCATCT	.	255.0	102.0	377.0	1.0	.	424	.	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126370737	126370737	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FAT4	NM_024582	exon9	c.A8566T	p.T2856S	GTAAGTACAGATG	.	75.0	25.0	106.0	0.0	.	1752	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155156250	155156250	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DCHS2	NM_017639	exon25	c.A8189T	p.Q2730L	ACTGTCTGGGGTA	.	64.0	28.0	94.0	0.0	.	594	.	.	Atlas-SNP
ETFDH	2110	hgsc.bcm.edu	hg19	4	159603531	159603531	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ETFDH	NM_004453	exon3	c.T360G	p.D120E	CCTTGATCCAGGT	.	56.0	16.0	80.0	0.0	.	57	.	.	Atlas-SNP
DDX60L	91351	hgsc.bcm.edu	hg19	4	169369824	169369824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DDX60L	NM_001012967	exon9	c.A1103G	p.N368S	GCTATATTCTTTA	.	228.0	82.0	361.0	0.0	.	116	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13920675	13920675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DNAH5	NM_001369	exon6	c.A712G	p.T238A	AGTCCGTAGGTTC	.	149.0	37.0	130.0	0.0	.	868	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13928204	13928204	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DNAH5	NM_001369	exon3	c.A276T	p.T92T	GATACCTGTTTCT	.	104.0	25.0	71.0	0.0	.	868	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13931352	13931352	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DNAH5	NM_001369	exon2	c.A59T	p.Q20L	AGTCTTTGCTAAA	.	94.0	21.0	95.0	0.0	.	868	.	.	Atlas-SNP
FBXL7	23194	hgsc.bcm.edu	hg19	5	15936796	15936796	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FBXL7	NM_012304	exon4	c.T977A	p.I326N	CCTCCATCAAGGA	.	59.0	10.0	49.0	0.0	.	138	.	.	Atlas-SNP
IL7R	3575	hgsc.bcm.edu	hg19	5	35874564	35874564	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.,1	IL7R	NM_002185	exon6	c.T720A	p.P240P	GGATCCTATCTTA	.	142.0	46.0	115.0	0.0	.	200	.	.	Atlas-SNP
FYB	2533	hgsc.bcm.edu	hg19	5	39130702	39130702	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FYB	NM_001243093	exon10	c.T1860A	p.S620R	ACTTCCACTCTGA	.	125.0	29.0	107.0	0.0	.	354	.	.	Atlas-SNP
MROH2B	133558	hgsc.bcm.edu	hg19	5	41048467	41048467	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_173489	exon16	c.T1643A	p.L548Q	TTCCATAGGTCTA	.	131.0	28.0	128.0	0.0	.	.	.	.	Atlas-SNP
CDC20B	166979	hgsc.bcm.edu	hg19	5	54429246	54429246	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CDC20B	NM_001170402	exon6	c.G691C	p.D231H	AGTAGTCATTTCG	.	97.0	16.0	77.0	0.0	.	61	.	.	Atlas-SNP
CDC20B	166979	hgsc.bcm.edu	hg19	5	54429259	54429259	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CDC20B	NM_001170402	exon6	c.T678A	p.T226T	AAGACCAGTAATA	.	108.0	19.0	83.0	0.0	.	61	.	.	Atlas-SNP
DEPDC1B	55789	hgsc.bcm.edu	hg19	5	59899387	59899387	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DEPDC1B	NM_001145208	exon9	c.A1073T	p.Q358L	AATGTCTGAACCA	.	57.0	14.0	47.0	0.0	.	56	.	.	Atlas-SNP
MARVELD2	153562	hgsc.bcm.edu	hg19	5	68715848	68715848	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MARVELD2	NM_001244734	exon2	c.A636T	p.T212T	TGTCACAGCTTAC	.	170.0	36.0	171.0	0.0	.	49	.	.	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	hg19	5	71411599	71411599	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MAP1B	NM_005909	exon2	c.T259A	p.S87T	CGACACTCTGCAA	.	53.0	10.0	59.0	0.0	.	243	.	.	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	hg19	5	71491824	71491824	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MAP1B	NM_005909	exon5	c.A2642T	p.E881V	AGAAGGAGAGAGA	.	136.0	32.0	102.0	0.0	.	243	.	.	Atlas-SNP
FAM169A	26049	hgsc.bcm.edu	hg19	5	74101006	74101006	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FAM169A	NM_015566	exon7	c.A774T	p.L258F	TCTTTGTAATGCT	.	82.0	12.0	68.0	0.0	.	61	.	.	Atlas-SNP
MCTP1	79772	hgsc.bcm.edu	hg19	5	94230454	94230454	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MCTP1	NM_024717	exon11	c.T1739A	p.L580Q	ACCAGCAGCACCA	.	92.0	17.0	62.0	0.0	.	110	.	.	Atlas-SNP
MCTP1	79772	hgsc.bcm.edu	hg19	5	94353130	94353130	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MCTP1	NM_024717	exon2	c.T779A	p.M260K	TGGTACATTCCGG	.	81.0	16.0	60.0	0.0	.	110	.	.	Atlas-SNP
SLC25A46	91137	hgsc.bcm.edu	hg19	5	110081977	110081977	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SLC25A46	NM_138773	exon4	c.A392T	p.Y131F	TTAATTACCATGC	.	315.0	115.0	335.0	0.0	.	33	.	.	Atlas-SNP
ACSL6	23305	hgsc.bcm.edu	hg19	5	131323886	131323886	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ACSL6	NM_001009185	exon7	c.A686T	p.Q229L	GCCTTCTGAGGTT	.	79.0	16.0	61.0	0.0	.	169	.	.	Atlas-SNP
CATSPER3	347732	hgsc.bcm.edu	hg19	5	134332053	134332053	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CATSPER3	NM_178019	exon3	c.A343T	p.N115Y	GGCTACAACCTGC	.	64.0	9.0	53.0	0.0	.	38	.	.	Atlas-SNP
HBEGF	1839	hgsc.bcm.edu	hg19	5	139725617	139725617	+	Silent	SNP	T	T	A	rs375401691		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	HBEGF	NM_001945	exon2	c.A99T	p.L33L	AGCAGCTAGCCCT	.	103.0	20.0	105.0	0.0	.	12	.	.	Atlas-SNP
PCDHB3	56132	hgsc.bcm.edu	hg19	5	140481325	140481325	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PCDHB3	NM_018937	exon1	c.A1092T	p.V364V	GACTGTACTGGCT	.	62.0	16.0	53.0	0.0	.	208	.	.	Atlas-SNP
PCDHB6	56130	hgsc.bcm.edu	hg19	5	140531957	140531957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PCDHB6	NM_018939	exon1	c.G2119T	p.V707L	CTGTTCGTGGCGG	.	66.0	10.0	69.0	0.0	.	161	.	.	Atlas-SNP
PCDHB7	56129	hgsc.bcm.edu	hg19	5	140552882	140552882	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PCDHB7	NM_018940	exon1	c.A466T	p.S156C	CTAGAGAGTGCAC	.	132.0	24.0	105.0	0.0	.	231	.	.	Atlas-SNP
PCDHB8	56128	hgsc.bcm.edu	hg19	5	140559337	140559337	+	Silent	SNP	C	C	T	rs374710779		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	PCDHB8,NS,carcinoma,0,1	PCDHB8	NM_019120	exon1	c.C1722T	p.T574T	CTGCACCGAGCTG	.	86.0	4.0	68.0	0.0	.	199	.	.	Atlas-SNP
PCDHB11	56125	hgsc.bcm.edu	hg19	5	140581442	140581442	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	PCDHB11,right_upper_lobe,carcinoma,0,1	PCDHB11	NM_018931	exon1	c.T2095A	p.S699T	GTGTCTTCGCTCT	.	99.0	25.0	91.0	0.0	.	162	.	.	Atlas-SNP
PCDHGA3	56112	hgsc.bcm.edu	hg19	5	140726047	140726047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PCDHGA3	NM_032011	exon1	c.T2447C	p.I816T	CTTTGATTATTAA	.	344.0	67.0	294.0	0.0	.	246	.	.	Atlas-SNP
PCDHGC4	56098	hgsc.bcm.edu	hg19	5	140865877	140865877	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PCDHGC4	NM_018928	exon1	c.A1137T	p.S379S	AGACTCAGGGTCA	.	146.0	32.0	115.0	0.0	.	91	.	.	Atlas-SNP
ARSI	340075	hgsc.bcm.edu	hg19	5	149676796	149676796	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ARSI	NM_001012301	exon2	c.T1691A	p.L564Q	GACATTAGCCTGG	.	199.0	45.0	167.0	0.0	.	65	.	.	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150933925	150933925	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FAT2	NM_001447	exon4	c.A3943T	p.T1315S	TCACCGTTAGGAT	.	114.0	18.0	109.0	0.0	.	465	.	.	Atlas-SNP
GRIA1	2890	hgsc.bcm.edu	hg19	5	153085377	153085377	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	GRIA1	NM_001258021	exon11	c.A1603T	p.K535X	AAATCCAAGCCGG	.	157.0	34.0	132.0	0.0	.	321	.	.	Atlas-SNP
ATP10B	23120	hgsc.bcm.edu	hg19	5	160071197	160071197	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ATP10B	NM_025153	exon9	c.A816T	p.R272R	GCAGCCTCGAAGC	.	116.0	25.0	122.0	0.0	.	201	.	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	hg19	5	169174411	169174411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DOCK2	NM_004946	exon23	c.G2279A	p.G760D	ATGAAGGCAAAGA	.	99.0	23.0	119.0	0.0	.	389	.	.	Atlas-SNP
STC2	8614	hgsc.bcm.edu	hg19	5	172744922	172744922	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	STC2	NM_003714	exon4	c.T837A	p.L279L	AGCCCCAAGGCCC	.	92.0	24.0	82.0	0.0	.	59	.	.	Atlas-SNP
ADAMTS2	9509	hgsc.bcm.edu	hg19	5	178541069	178541069	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ADAMTS2	NM_014244	exon22	c.T3435A	p.N1145K	GGAGGCATTGAGA	.	198.0	34.0	175.0	0.0	.	190	.	.	Atlas-SNP
RUFY1	80230	hgsc.bcm.edu	hg19	5	179016569	179016569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	RUFY1	NM_025158	exon9	c.T1049C	p.I350T	ACCGAATTTGCTC	.	477.0	116.0	374.0	0.0	.	101	.	.	Atlas-SNP
MGAT1	4245	hgsc.bcm.edu	hg19	5	180219134	180219134	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MGAT1	NM_001114617	exon3	c.G838C	p.E280Q	TGGGCTCCAGCTC	.	86.0	21.0	77.0	0.0	.	48	.	.	Atlas-SNP
SCAND3	114821	hgsc.bcm.edu	hg19	6	28540129	28540129	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SCAND3	NM_052923	exon4	c.T3537A	p.S1179R	ATGTTCACTGATA	.	293.0	205.0	191.0	0.0	.	156	.	.	Atlas-SNP
HLA-G	3135	hgsc.bcm.edu	hg19	6	29797324	29797324	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	HLA-G	NM_002127	exon5	c.A749T	p.Q250L	AGACCCAGGACGT	.	156.0	104.0	120.0	0.0	.	90	.	.	Atlas-SNP
CDSN	1041	hgsc.bcm.edu	hg19	6	31084505	31084505	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CDSN	NM_001264	exon2	c.A887T	p.Y296F	ACCTCGTAGCCAC	.	67.0	50.0	37.0	0.0	.	48	.	.	Atlas-SNP
XPO5	57510	hgsc.bcm.edu	hg19	6	43526298	43526298	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	XPO5	NM_020750	exon12	c.A1252T	p.S418C	CACAGCTAGGGCT	.	160.0	118.0	111.0	0.0	.	79	.	.	Atlas-SNP
TMEM63B	55362	hgsc.bcm.edu	hg19	6	44116248	44116248	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TMEM63B	NM_018426	exon14	c.1122-2A>T	.	CTTTCTAGCATCC	.	78.0	14.0	63.0	0.0	.	77	.	.	Atlas-SNP
TNFRSF21	27242	hgsc.bcm.edu	hg19	6	47202430	47202430	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TNFRSF21	NM_014452	exon5	c.A1714T	p.R572W	CGTTCCTGCTCAG	.	104.0	13.0	51.0	0.0	.	61	.	.	Atlas-SNP
GPR111	222611	hgsc.bcm.edu	hg19	6	47650129	47650129	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	GPR111	NM_153839	exon7	c.T1630A	p.L544M	CCAGCTTTGGCCA	.	138.0	26.0	97.0	0.0	.	123	.	.	Atlas-SNP
CD109	135228	hgsc.bcm.edu	hg19	6	74502490	74502490	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CD109	NM_133493	exon23	c.A2843C	p.N948T	CAGATAATTTGAA	.	54.0	17.0	57.0	0.0	.	170	.	.	Atlas-SNP
IBTK	25998	hgsc.bcm.edu	hg19	6	82921267	82921267	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	IBTK	NM_015525	exon14	c.A2314T	p.M772L	ATTTCATGGTCAC	.	292.0	104.0	479.0	0.0	.	128	.	.	Atlas-SNP
ORC3	23595	hgsc.bcm.edu	hg19	6	88375515	88375515	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ORC3	NM_181837	exon19	c.A1997C	p.N666T	ATGCAAATTCTGC	.	51.0	21.0	105.0	0.0	.	51	.	.	Atlas-SNP
TRDN	10345	hgsc.bcm.edu	hg19	6	123851680	123851680	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TRDN	NM_001256022	exon5	c.A455T	p.E152V	GGTTTCTCTTGTT	.	120.0	45.0	214.0	0.0	.	88	.	.	Atlas-SNP
SOGA3	387104	hgsc.bcm.edu	hg19	6	127837602	127837602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_001012279	exon2	c.C158A	p.T53K	GCGATTGTCTGTC	.	16.0	7.0	25.0	0.0	.	.	.	.	Atlas-SNP
AHI1	54806	hgsc.bcm.edu	hg19	6	135644338	135644338	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	AHI1	NM_017651	exon24	c.A3290T	p.Q1097L	CCTTCCTGTCCCT	.	69.0	25.0	108.0	0.0	.	81	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152651184	152651184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SYNE1	NM_182961	exon78	c.G14636T	p.C4879F	CTCTCACATTCTG	.	65.0	18.0	69.0	0.0	.	3227	.	.	Atlas-SNP
TIAM2	26230	hgsc.bcm.edu	hg19	6	155458554	155458554	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TIAM2	NM_012454	exon4	c.A1438T	p.T480S	ACATCTACAGAAA	.	106.0	37.0	116.0	0.0	.	161	.	.	Atlas-SNP
LFNG	3955	hgsc.bcm.edu	hg19	7	2552910	2552910	+	Missense_Mutation	SNP	A	A	G	rs199517402		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	LFNG	NM_001166355	exon2	c.A167G	p.E56G	TGGATGAGTGGAG	.	57.0	4.0	68.0	0.0	.	57	.	.	Atlas-SNP
MMD2	221938	hgsc.bcm.edu	hg19	7	4959927	4959927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MMD2	NM_198403	exon3	c.C165A	p.N55K	GTAGAGGTTGGAG	.	78.0	24.0	102.0	0.0	.	63	.	.	Atlas-SNP
ZNF12	7559	hgsc.bcm.edu	hg19	7	6737036	6737036	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ZNF12	NM_016265	exon4	c.A172T	p.S58C	ACTTGCTGATAAC	.	77.0	23.0	105.0	0.0	.	53	.	.	Atlas-SNP
PHF14	9678	hgsc.bcm.edu	hg19	7	11080358	11080358	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PHF14	NM_014660	exon12	c.A2136T	p.E712D	AAAAGAAGGAGGC	.	435.0	115.0	469.0	1.0	.	90	.	.	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	hg19	7	12409623	12409623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	VWDE_ENST00000275358,colon,carcinoma,0,2	VWDE	NM_001135924	exon12	c.C2309T	p.T770M	AGATCCGTTTGGC	.	134.0	39.0	138.0	0.0	.	123	.	.	Atlas-SNP
AGR2	10551	hgsc.bcm.edu	hg19	7	16832566	16832566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	AGR2	NM_006408	exon8	c.A494G	p.K165R	GCTTTCTTCATGT	.	50.0	10.0	64.0	0.0	.	14	.	.	Atlas-SNP
MACC1	346389	hgsc.bcm.edu	hg19	7	20198999	20198999	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MACC1	NM_182762	exon5	c.T985A	p.Y329N	CTTTATAAATGTA	.	81.0	25.0	93.0	0.0	.	99	.	.	Atlas-SNP
NME8	51314	hgsc.bcm.edu	hg19	7	37936559	37936559	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_016616	exon17	c.A1632T	p.A544A	AGAAGCAAAATTA	.	155.0	34.0	153.0	0.0	.	.	.	.	Atlas-SNP
ADCY1	107	hgsc.bcm.edu	hg19	7	45614683	45614683	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ADCY1	NM_021116	exon1	c.A541T	p.S181C	GTGCGCAGCCTGC	.	85.0	24.0	82.0	0.0	.	187	.	.	Atlas-SNP
ZPBP	11055	hgsc.bcm.edu	hg19	7	50132767	50132767	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ZPBP	NM_007009	exon1	c.A24T	p.P8P	CCGCGCTGGGCCA	.	42.0	15.0	67.0	0.0	.	65	.	.	Atlas-SNP
EGFR	1956	hgsc.bcm.edu	hg19	7	55273271	55273271	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	EGFR	NM_005228	exon28	c.A3594T	p.L1198L	ATACCTAAGGGTC	.	152.0	31.0	153.0	0.0	.	20426	.	.	Atlas-SNP
FKBP6	8468	hgsc.bcm.edu	hg19	7	72745693	72745693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FKBP6	NM_003602	exon5	c.C502A	p.L168M	AAGGTCCTGAAAG	.	82.0	39.0	88.0	0.0	.	35	.	.	Atlas-SNP
UPK3B	80761	hgsc.bcm.edu	hg19	7	76143358	76143358	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	UPK3B	NM_030570	exon3	c.A721C	p.T241P	CCTCCTACTCTTG	.	100.0	36.0	102.0	0.0	.	15	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82544071	82544071	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PCLO	NM_014510	exon7	c.A13231G	p.T4411A	CTCGAGTCCGTGA	.	85.0	17.0	103.0	0.0	.	1506	.	.	Atlas-SNP
SEMA3A	10371	hgsc.bcm.edu	hg19	7	83689783	83689783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SEMA3A	NM_006080	exon5	c.T545C	p.I182T	GCACCTATTAAAA	.	173.0	40.0	205.0	0.0	.	121	.	.	Atlas-SNP
SEMA3D	223117	hgsc.bcm.edu	hg19	7	84649627	84649627	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SEMA3D	NM_152754	exon12	c.T1425A	p.T475T	GAGGACAGTTCCA	.	70.0	18.0	79.0	0.0	.	177	.	.	Atlas-SNP
COL1A2	1278	hgsc.bcm.edu	hg19	7	94055788	94055788	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	COL1A2	NM_000089	exon46	c.A3051T	p.R1017S	GCCCAGAGGTCTT	.	103.0	27.0	130.0	0.0	.	240	.	.	Atlas-SNP
KPNA7	402569	hgsc.bcm.edu	hg19	7	98786068	98786068	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	KPNA7	NM_001145715	exon6	c.A755T	p.H252L	TCCTGGTGCTGCA	.	115.0	23.0	93.0	0.0	.	31	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100677847	100677847	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MUC17	NM_001040105	exon3	c.C3150T	p.S1050S	TGTCAGCACCACA	.	183.0	45.0	129.0	0.0	.	804	.	.	Atlas-SNP
LRRC17	10234	hgsc.bcm.edu	hg19	7	102574534	102574534	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	LRRC17	NM_005824	exon2	c.A174T	p.T58T	GTACACATATCTC	.	97.0	28.0	114.0	0.0	.	45	.	.	Atlas-SNP
FOXP2	93986	hgsc.bcm.edu	hg19	7	114299675	114299675	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FOXP2	NM_148898	exon14	c.A1669T	p.S557C	ATTTACAGCTGGT	.	133.0	30.0	157.0	0.0	.	133	.	.	Atlas-SNP
ASZ1	136991	hgsc.bcm.edu	hg19	7	117060261	117060261	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ASZ1	NM_130768	exon4	c.A396G	p.V132V	TAGTTCTACACAC	.	40.0	11.0	45.0	0.0	.	56	.	.	Atlas-SNP
PLXNA4	91584	hgsc.bcm.edu	hg19	7	132192611	132192611	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PLXNA4	NM_001105543	exon2	c.T842A	p.V281E	AGCCTCACGAGCT	.	88.0	32.0	71.0	0.0	.	873	.	.	Atlas-SNP
MKRN1	23608	hgsc.bcm.edu	hg19	7	140171777	140171777	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MKRN1	NM_013446	exon2	c.A220T	p.N74Y	GACAGTTGTCTCC	.	80.0	16.0	84.0	0.0	.	35	.	.	Atlas-SNP
PRSS1	5644	hgsc.bcm.edu	hg19	7	142459633	142459633	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PRSS1	NM_002769	exon3	c.A209T	p.Q70L	GCATCCAGGTGAG	.	137.0	20.0	148.0	0.0	.	68	.	.	Atlas-SNP
EPHB6	2051	hgsc.bcm.edu	hg19	7	142562074	142562074	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	EPHB6	NM_004445	exon7	c.C516T	p.S172S	CTCCTCCTCTTCT	.	81.0	7.0	94.0	0.0	.	168	.	.	Atlas-SNP
TRPV5	56302	hgsc.bcm.edu	hg19	7	142609803	142609803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TRPV5	NM_019841	exon13	c.G1633T	p.A545S	AGTTGGCAGGTGC	.	177.0	105.0	208.0	0.0	.	164	.	.	Atlas-SNP
CNTNAP2	26047	hgsc.bcm.edu	hg19	7	146825821	146825821	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CNTNAP2	NM_014141	exon7	c.A976T	p.S326C	AAGCCCAGCTCCA	.	168.0	40.0	172.0	0.0	.	392	.	.	Atlas-SNP
KCNH2	3757	hgsc.bcm.edu	hg19	7	150643965	150643965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	KCNH2	NM_000238	exon14	c.G3330T	p.Q1110H	GCTTACCTGAGAA	.	48.0	16.0	92.0	0.0	.	157	.	.	Atlas-SNP
DNAJB6	10049	hgsc.bcm.edu	hg19	7	157174947	157174947	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DNAJB6	NM_058246	exon6	c.T354C	p.P118P	AGACCCTTTTGAG	.	55.0	4.0	75.0	0.0	.	39	.	.	Atlas-SNP
XKR5	389610	hgsc.bcm.edu	hg19	8	6690291	6690291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	XKR5	NM_207411	exon2	c.G190A	p.G64R	AATGCCCTGGATG	.	122.0	21.0	100.0	0.0	.	20	.	.	Atlas-SNP
MTMR9	66036	hgsc.bcm.edu	hg19	8	11177226	11177226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MTMR9	NM_015458	exon9	c.G1365A	p.M455I	GACGATGTCTTTG	.	83.0	15.0	79.0	0.0	.	58	.	.	Atlas-SNP
ATP6V1B2	526	hgsc.bcm.edu	hg19	8	20068078	20068078	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ATP6V1B2	NM_001693	exon5	c.386-2A>T	.	ATTTCTAGGTCGG	.	165.0	36.0	144.0	0.0	.	34	.	.	Atlas-SNP
PRKDC	5591	hgsc.bcm.edu	hg19	8	48746959	48746959	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PRKDC	NM_001081640	exon60	c.7951-2A>T	.	TCCATCTGTGACA	.	61.0	16.0	53.0	0.0	.	394	.	.	Atlas-SNP
OPRK1	4986	hgsc.bcm.edu	hg19	8	54142248	54142248	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OPRK1	NM_000912	exon4	c.T752A	p.L251Q	AGACGCAGGATCA	.	203.0	30.0	165.0	0.0	.	90	.	.	Atlas-SNP
CYP7B1	9420	hgsc.bcm.edu	hg19	8	65528610	65528610	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CYP7B1	NM_004820	exon3	c.A488T	p.Q163L	AAAACTTGTTTTA	.	90.0	20.0	75.0	0.0	.	94	.	.	Atlas-SNP
ARFGEF1	10565	hgsc.bcm.edu	hg19	8	68211585	68211585	+	Silent	SNP	A	A	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ARFGEF1	NM_006421	exon4	c.T318G	p.L106L	AGCAATAAGTTTC	.	157.0	90.0	135.0	0.0	.	196	.	.	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77617787	77617787	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ZFHX4	NM_024721	exon2	c.A1464C	p.L488F	AGTATTAGGTGAA	.	233.0	39.0	142.0	0.0	.	878	.	.	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77766437	77766437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ZFHX4	NM_024721	exon10	c.C7280T	p.P2427L	CCAAACCAGCCCT	.	157.0	32.0	132.0	0.0	.	878	.	.	Atlas-SNP
CDH17	1015	hgsc.bcm.edu	hg19	8	95174341	95174341	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CDH17	NM_004063	exon11	c.T1332C	p.D444D	GATCTGATCATTG	.	353.0	257.0	213.0	0.0	.	119	.	.	Atlas-SNP
KIAA1429	25962	hgsc.bcm.edu	hg19	8	95539091	95539091	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	KIAA1429	NM_015496	exon8	c.A1381T	p.K461X	CTAATTTGGTCCC	.	113.0	49.0	70.0	0.0	.	176	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113599330	113599330	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CSMD3	NM_198123	exon23	c.A3850T	p.R1284X	ATGTTCTGGCTGA	.	157.0	30.0	99.0	0.0	.	2325	.	.	Atlas-SNP
FER1L6	654463	hgsc.bcm.edu	hg19	8	125103790	125103790	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FER1L6	NM_001039112	exon34	c.T4518C	p.F1506F	AGTCTTTTCTGGA	.	196.0	101.0	150.0	0.0	.	268	.	.	Atlas-SNP
TG	7038	hgsc.bcm.edu	hg19	8	133899402	133899402	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TG	NM_003235	exon9	c.A1785T	p.L595F	AGATTTAGGTGAT	.	239.0	36.0	173.0	0.0	.	416	.	.	Atlas-SNP
TG	7038	hgsc.bcm.edu	hg19	8	133913655	133913655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TG	NM_003235	exon16	c.G3491T	p.G1164V	GCCCAGGCTATGT	.	163.0	28.0	121.0	0.0	.	416	.	.	Atlas-SNP
CYP11B1	1584	hgsc.bcm.edu	hg19	8	143961039	143961039	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CYP11B1	NM_000497	exon1	c.T191A	p.L64Q	AGGTGCAGGTCCT	.	187.0	47.0	137.0	0.0	.	128	.	.	Atlas-SNP
RECQL4	9401	hgsc.bcm.edu	hg19	8	145738779	145738779	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	RECQL4	NM_004260	exon14	c.G2286A	p.Q762Q	CTGGCCCTGCATG	.	121.0	12.0	106.0	0.0	.	75	.	.	Atlas-SNP
DOCK8	81704	hgsc.bcm.edu	hg19	9	336700	336700	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DOCK8	NM_203447	exon12	c.T1404A	p.V468V	GAGCGTTAGCAGC	.	99.0	32.0	109.0	0.0	.	401	.	.	Atlas-SNP
GLDC	2731	hgsc.bcm.edu	hg19	9	6592892	6592892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	GLDC	NM_000170	exon10	c.G1360T	p.A454S	GCTGAGCGGCCCT	.	303.0	173.0	341.0	1.0	.	118	.	.	Atlas-SNP
PTPRD	5789	hgsc.bcm.edu	hg19	9	8341889	8341889	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PTPRD	NM_002839	exon40	c.A4751T	p.H1584L	GTTACATGGCCAT	.	68.0	14.0	109.0	0.0	.	1348	.	.	Atlas-SNP
PTPRD	5789	hgsc.bcm.edu	hg19	9	8636718	8636718	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PTPRD	NM_001040712	exon2	c.T191G	p.V64G	TTGCTGACTTTCT	.	105.0	6.0	147.0	0.0	.	1348	.	.	Atlas-SNP
BNC2	54796	hgsc.bcm.edu	hg19	9	16418994	16418994	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	BNC2	NM_017637	exon7	c.T3293A	p.V1098E	TAATCTACTGAAG	.	67.0	13.0	68.0	0.0	.	166	.	.	Atlas-SNP
IFNA7	3444	hgsc.bcm.edu	hg19	9	21202098	21202098	+	Missense_Mutation	SNP	C	C	T	rs112551811		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	IFNA7	NM_021057	exon1	c.G67A	p.G23S	CACAGCCCAGAGA	.	144.0	33.0	134.0	0.0	.	24	.	C|0.500;T|0.500	Atlas-SNP
TUSC1	286319	hgsc.bcm.edu	hg19	9	25677993	25677993	+	Silent	SNP	G	G	A	rs377425143	alternate_allele	TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TUSC1	NM_001004125	exon1	c.C327T	p.S109S	GAAGAGGCTGCGG	.	67.0	13.0	70.0	0.0	.	7	.	.	Atlas-SNP
TAF1L	138474	hgsc.bcm.edu	hg19	9	32632698	32632698	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TAF1L	NM_153809	exon1	c.C2880A	p.A960A	CTTCATGGCAGCA	.	197.0	55.0	222.0	0.0	.	382	.	.	Atlas-SNP
TAF1L	138474	hgsc.bcm.edu	hg19	9	32632699	32632699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TAF1L	NM_153809	exon1	c.C2879A	p.A960D	TTCATGGCAGCAA	.	198.0	55.0	220.0	0.0	.	382	.	.	Atlas-SNP
UNC13B	10497	hgsc.bcm.edu	hg19	9	35403468	35403468	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	UNC13B	NM_006377	exon38	c.A4362T	p.T1454T	GCAGACAGCGGGT	.	120.0	36.0	172.0	0.0	.	153	.	.	Atlas-SNP
CA9	768	hgsc.bcm.edu	hg19	9	35675916	35675916	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CA9	NM_001216	exon3	c.A592T	p.N198Y	CGCAACAATGGCC	.	52.0	12.0	74.0	0.0	.	48	.	.	Atlas-SNP
TLN1	7094	hgsc.bcm.edu	hg19	9	35707454	35707454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TLN1	NM_006289	exon36	c.G4664T	p.R1555L	TGGGCACGGTTCT	.	51.0	25.0	78.0	0.0	.	185	.	.	Atlas-SNP
DAPK1	1612	hgsc.bcm.edu	hg19	9	90296521	90296521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DAPK1	NM_004938	exon20	c.C2204T	p.P735L	CTTCACCCCTGGC	.	54.0	16.0	55.0	0.0	.	329	.	.	Atlas-SNP
SEMA4D	10507	hgsc.bcm.edu	hg19	9	91994239	91994239	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SEMA4D	NM_006378	exon18	c.A1969T	p.T657S	ACAAGGTGGGGGC	.	57.0	14.0	101.0	0.0	.	81	.	.	Atlas-SNP
FGD3	89846	hgsc.bcm.edu	hg19	9	95772649	95772649	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FGD3	NM_001083536	exon7	c.A959T	p.D320V	CCCCAGACCGGAA	.	92.0	31.0	126.0	0.0	.	116	.	.	Atlas-SNP
CCDC180	0	hgsc.bcm.edu	hg19	9	100116932	100116932	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_020893	exon23	c.A3216T	p.I1072I	CCGGATAGAGTTG	.	173.0	35.0	205.0	0.0	.	.	.	.	Atlas-SNP
ZNF462	58499	hgsc.bcm.edu	hg19	9	109765689	109765689	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ZNF462	NM_021224	exon11	c.A7171T	p.S2391C	ATGAACAGCAAGG	.	65.0	18.0	73.0	0.0	.	322	.	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	hg19	9	113169638	113169638	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SVEP1	NM_153366	exon38	c.A8242T	p.I2748F	CTAGAATGTGTCC	.	92.0	15.0	107.0	0.0	.	326	.	.	Atlas-SNP
ZNF618	114991	hgsc.bcm.edu	hg19	9	116798646	116798646	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ZNF618	NM_133374	exon12	c.A956T	p.Q319L	ACATGCAGTCCCA	.	106.0	24.0	117.0	0.0	.	184	.	.	Atlas-SNP
PTGS1	5742	hgsc.bcm.edu	hg19	9	125148941	125148941	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PTGS1	NM_000962	exon9	c.A1226T	p.N409I	TGTTCAACACCTC	.	78.0	18.0	111.0	0.0	.	84	.	.	Atlas-SNP
PKN3	29941	hgsc.bcm.edu	hg19	9	131469505	131469505	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PKN3	NM_013355	exon6	c.A656T	p.Q219L	AGGCCCAGGCCCA	.	55.0	12.0	73.0	0.0	.	62	.	.	Atlas-SNP
C9orf171	389799	hgsc.bcm.edu	hg19	9	135374923	135374923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	C9orf171	NM_207417	exon4	c.G568A	p.D190N	CAGGATGACCGGC	.	149.0	38.0	180.0	0.0	.	53	.	.	Atlas-SNP
BRD3	8019	hgsc.bcm.edu	hg19	9	136905393	136905393	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	BRD3	NM_007371	exon10	c.1408-2A>T	.	TTCAGCTGGAAAA	.	31.0	5.0	19.0	0.0	.	82	.	.	Atlas-SNP
WDR5	11091	hgsc.bcm.edu	hg19	9	137023031	137023031	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	WDR5	NM_052821	exon13	c.A921T	p.T307T	CTCAACAGCTTGT	.	62.0	19.0	82.0	0.0	.	29	.	.	Atlas-SNP
C9orf169	375791	hgsc.bcm.edu	hg19	9	140120486	140120486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	C9orf169	NM_199001	exon2	c.G413T	p.C138F	ACAGCTGCTGCTG	.	81.0	16.0	73.0	0.0	.	6	.	.	Atlas-SNP
NELFB	25920	hgsc.bcm.edu	hg19	9	140166672	140166672	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_015456	exon11	c.A1485T	p.P495P	CTCTCCAAGGTAG	.	60.0	21.0	55.0	0.0	.	.	.	.	Atlas-SNP
MCM10	55388	hgsc.bcm.edu	hg19	10	13214750	13214750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MCM10	NM_182751	exon5	c.A580G	p.K194E	ACACCAAAGGCTT	.	92.0	23.0	112.0	0.0	.	76	.	.	Atlas-SNP
KIAA1217	56243	hgsc.bcm.edu	hg19	10	24722117	24722117	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	KIAA1217	NM_019590	exon4	c.T747C	p.D249D	AAATGATGTAAGG	.	38.0	11.0	34.0	0.0	.	235	.	.	Atlas-SNP
MYO3A	53904	hgsc.bcm.edu	hg19	10	26385344	26385344	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MYO3A	NM_017433	exon16	c.T1597A	p.Y533N	TACATTTATGCTG	.	373.0	91.0	339.0	0.0	.	371	.	.	Atlas-SNP
GAD2	2572	hgsc.bcm.edu	hg19	10	26518688	26518688	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	GAD2	NM_000818	exon7	c.T822C	p.I274I	GCTCATTGCCTTC	.	52.0	8.0	76.0	0.0	.	116	.	.	Atlas-SNP
GDF10	2662	hgsc.bcm.edu	hg19	10	48429198	48429198	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	GDF10	NM_004962	exon2	c.A688T	p.R230W	GGTCCCTCTCCTC	.	87.0	22.0	92.0	0.0	.	79	.	.	Atlas-SNP
C10orf71	118461	hgsc.bcm.edu	hg19	10	50531471	50531471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	C10orf71	NM_001135196	exon3	c.C881A	p.A294D	ACACAGCTGGAAC	.	103.0	31.0	135.0	0.0	.	179	.	.	Atlas-SNP
TMEM26	219623	hgsc.bcm.edu	hg19	10	63212811	63212811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TMEM26	NM_178505	exon1	c.T29C	p.L10P	GTGGCCAGGGCGT	.	88.0	26.0	97.0	0.0	.	47	.	.	Atlas-SNP
GRID1	2894	hgsc.bcm.edu	hg19	10	87379775	87379775	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	GRID1	NM_017551	exon14	c.T2209G	p.Y737D	AGGCGTAGTTCCC	.	71.0	26.0	153.0	0.0	.	204	.	.	Atlas-SNP
ANKRD1	27063	hgsc.bcm.edu	hg19	10	92678913	92678913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ANKRD1	NM_014391	exon3	c.T320C	p.V107A	TCCTTTACAACTG	.	60.0	20.0	64.0	0.0	.	50	.	.	Atlas-SNP
MYOF	26509	hgsc.bcm.edu	hg19	10	95072901	95072901	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MYOF	NM_013451	exon51	c.A5765T	p.D1922V	ATCATGTCCAATC	.	75.0	20.0	100.0	0.0	.	177	.	.	Atlas-SNP
PIK3AP1	118788	hgsc.bcm.edu	hg19	10	98369550	98369550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PIK3AP1	NM_152309	exon14	c.G2089T	p.G697C	TGGGGCCACTCTC	.	103.0	54.0	137.0	0.0	.	111	.	.	Atlas-SNP
ARHGAP19	84986	hgsc.bcm.edu	hg19	10	99025682	99025682	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ARHGAP19	NM_001204300	exon2	c.A257T	p.K86M	GGCAACTTAAGGT	.	112.0	38.0	132.0	0.0	.	72	.	.	Atlas-SNP
LDB1	8861	hgsc.bcm.edu	hg19	10	103870894	103870894	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	LDB1	NM_001113407	exon4	c.A181T	p.T61S	ATGGTGTGTGCCT	.	49.0	14.0	53.0	0.0	.	61	.	.	Atlas-SNP
CALHM1	255022	hgsc.bcm.edu	hg19	10	105215321	105215321	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CALHM1	NM_001001412	exon2	c.A739T	p.I247F	GCTGGATGCAGAC	.	83.0	17.0	96.0	0.0	.	33	.	.	Atlas-SNP
ADD3	120	hgsc.bcm.edu	hg19	10	111879082	111879082	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ADD3	NM_001121	exon7	c.A831T	p.Q277H	AATTCAACTGCAG	.	154.0	42.0	171.0	0.0	.	89	.	.	Atlas-SNP
ATRNL1	26033	hgsc.bcm.edu	hg19	10	117059542	117059542	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ATRNL1	NM_207303	exon16	c.2416-2A>G	.	GTTTACAGAAAGT	.	68.0	15.0	83.0	0.0	.	219	.	.	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	hg19	10	123970404	123970404	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TACC2	NM_206862	exon9	c.A6464T	p.Q2155L	CGCAACAGGAGCC	.	42.0	8.0	65.0	0.0	.	271	.	.	Atlas-SNP
FAM24A	118670	hgsc.bcm.edu	hg19	10	124672386	124672386	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FAM24A	NM_001029888	exon3	c.T234A	p.S78S	TCCATCTCTCCAG	.	116.0	40.0	127.0	0.0	.	16	.	.	Atlas-SNP
VENTX	27287	hgsc.bcm.edu	hg19	10	135053795	135053795	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	VENTX,right_upper_lobe,carcinoma,0,1	VENTX	NM_014468	exon3	c.G762A	p.T254T	ACAGACGGGGGAT	.	52.0	17.0	50.0	0.0	.	24	.	.	Atlas-SNP
PKP3	11187	hgsc.bcm.edu	hg19	11	399156	399156	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PKP3	NM_007183	exon5	c.A1233G	p.T411T	GCGGACACTGCGG	.	74.0	18.0	106.0	0.0	.	36	.	.	Atlas-SNP
KRTAP5-6	440023	hgsc.bcm.edu	hg19	11	1718756	1718756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	KRTAP5-6	NM_001012416	exon1	c.G281A	p.C94Y	AGCCCTGCTACTG	.	90.0	29.0	119.0	0.0	.	18	.	.	Atlas-SNP
OR51L1	119682	hgsc.bcm.edu	hg19	11	5020231	5020231	+	Missense_Mutation	SNP	A	A	G	rs61910724	alternate_allele	TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OR51L1	NM_001004755	exon1	c.A19G	p.S7G	AATAACAGTGATG	.	106.0	65.0	118.0	0.0	.	60	.	A|0.987;C|0.013	Atlas-SNP
OR52E2	119678	hgsc.bcm.edu	hg19	11	5080160	5080160	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OR52E2	NM_001005164	exon1	c.A698T	p.E233V	CGGGCTTCATGAG	.	155.0	35.0	184.0	0.0	.	63	.	.	Atlas-SNP
OR51B6	390058	hgsc.bcm.edu	hg19	11	5373112	5373112	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OR51B6	NM_001004750	exon1	c.C375T	p.R125R	CATCCGCAGCCCC	.	105.0	55.0	107.0	0.0	.	53	.	.	Atlas-SNP
OR52B6	340980	hgsc.bcm.edu	hg19	11	5602597	5602597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OR52B6	NM_001005162	exon1	c.T491C	p.V164A	AGATCGTCACTGC	.	45.0	11.0	48.0	0.0	.	37	.	.	Atlas-SNP
OR56A4	120793	hgsc.bcm.edu	hg19	11	6024147	6024147	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OR56A4	NM_001005179	exon1	c.T232A	p.W78R	GCTGCCAGCTCTG	.	148.0	34.0	169.0	0.0	.	66	.	.	Atlas-SNP
SBF2	81846	hgsc.bcm.edu	hg19	11	9868576	9868576	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SBF2	NM_030962	exon23	c.A2861T	p.K954M	ATCTTCTTCTCCT	.	97.0	20.0	129.0	0.0	.	146	.	.	Atlas-SNP
DKK3	27122	hgsc.bcm.edu	hg19	11	11987363	11987363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DKK3	NM_001018057	exon6	c.C823T	p.P275S	TGTGGGGCTGGCA	.	39.0	9.0	35.0	0.0	.	35	.	.	Atlas-SNP
CYP2R1	120227	hgsc.bcm.edu	hg19	11	14902118	14902118	+	Silent	SNP	T	T	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CYP2R1	NM_024514	exon3	c.A564C	p.S188S	TATGTTTGAAACA	.	90.0	22.0	92.0	0.0	.	41	.	.	Atlas-SNP
ELP4	26610	hgsc.bcm.edu	hg19	11	31669364	31669364	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ELP4	NM_019040	exon8	c.A1003T	p.R335X	TCTGAGAGAGAAA	.	144.0	47.0	116.0	0.0	.	78	.	.	Atlas-SNP
KIAA1549L	25758	hgsc.bcm.edu	hg19	11	33566763	33566763	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_012194	exon2	c.T2333A	p.L778Q	CCGCGCTGACATC	.	108.0	34.0	127.0	0.0	.	.	.	.	Atlas-SNP
CD44	960	hgsc.bcm.edu	hg19	11	35226078	35226078	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CD44	NM_000610	exon10	c.T1173A	p.S391R	TAGTAGTACAACG	.	83.0	23.0	86.0	0.0	.	48	.	.	Atlas-SNP
LDLRAD3	143458	hgsc.bcm.edu	hg19	11	36250861	36250861	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	LDLRAD3	NM_174902	exon6	c.A952T	p.S318C	GACACCAGCCACA	.	190.0	46.0	195.0	0.0	.	52	.	.	Atlas-SNP
RAG2	5897	hgsc.bcm.edu	hg19	11	36614484	36614484	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	RAG2	NM_001243785	exon3	c.A1235T	p.E412V	CCTGTCTCAGACT	.	55.0	13.0	72.0	0.0	.	92	.	.	Atlas-SNP
EXT2	2132	hgsc.bcm.edu	hg19	11	44253901	44253901	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	EXT2	NM_207122	exon11	c.1663-2A>T	.	GTCCTTAGGTCTG	.	80.0	22.0	122.0	0.0	.	129	.	.	Atlas-SNP
CREB3L1	90993	hgsc.bcm.edu	hg19	11	46329400	46329400	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CREB3L1	NM_052854	exon3	c.A365T	p.K122I	GACACAAACTGTG	.	153.0	46.0	200.0	0.0	.	30	.	.	Atlas-SNP
OR5D18	219438	hgsc.bcm.edu	hg19	11	55587486	55587486	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OR5D18	NM_001001952	exon1	c.T381A	p.I127I	GGCCATTTGCAAC	.	109.0	23.0	138.0	0.0	.	121	.	.	Atlas-SNP
OR5F1	338674	hgsc.bcm.edu	hg19	11	55761572	55761572	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OR5F1	NM_003697	exon1	c.T530A	p.F177Y	CAGAAGAAGTGAT	.	127.0	33.0	169.0	0.0	.	116	.	.	Atlas-SNP
MPEG1	219972	hgsc.bcm.edu	hg19	11	58978713	58978713	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MPEG1	NM_001039396	exon1	c.T1626G	p.D542E	AGCAGGATCTACC	.	63.0	12.0	93.0	0.0	.	72	.	.	Atlas-SNP
DAGLA	747	hgsc.bcm.edu	hg19	11	61511593	61511593	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DAGLA	NM_006133	exon20	c.T2761A	p.F921I	AGCCTCTTCAACC	.	97.0	34.0	113.0	0.0	.	109	.	.	Atlas-SNP
SLC22A12	116085	hgsc.bcm.edu	hg19	11	64359422	64359422	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SLC22A12	NM_144585	exon1	c.G394C	p.V132L	ACAATCGTGGCCA	.	26.0	9.0	32.0	0.0	.	68	.	.	Atlas-SNP
CATSPER1	117144	hgsc.bcm.edu	hg19	11	65787819	65787819	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CATSPER1	NM_053054	exon8	c.T2033A	p.L678Q	TTGAACAGCGCCG	.	88.0	28.0	95.0	0.0	.	101	.	.	Atlas-SNP
CCDC87	55231	hgsc.bcm.edu	hg19	11	66360350	66360350	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CCDC87	NM_018219	exon1	c.A137T	p.Q46L	AAGGACTGCAGAA	.	68.0	23.0	78.0	0.0	.	83	.	.	Atlas-SNP
MTL5	9633	hgsc.bcm.edu	hg19	11	68517742	68517742	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MTL5	NM_001039656	exon2	c.A387T	p.L129L	CGCGGGTAGCAGC	.	92.0	29.0	91.0	0.0	.	37	.	.	Atlas-SNP
RSF1	51773	hgsc.bcm.edu	hg19	11	77413496	77413496	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	RSF1	NM_016578	exon6	c.A778G	p.M260V	AATCCATAGGCTG	.	49.0	14.0	69.0	0.0	.	105	.	.	Atlas-SNP
TRPC6	7225	hgsc.bcm.edu	hg19	11	101323689	101323689	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TRPC6	NM_004621	exon13	c.A2793T	p.R931S	GCATTATCTATTG	.	83.0	17.0	107.0	0.0	.	132	.	.	Atlas-SNP
TRPC6	7225	hgsc.bcm.edu	hg19	11	101375297	101375297	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TRPC6	NM_004621	exon2	c.A403T	p.N135Y	GGGCATTCTGGCC	.	93.0	27.0	88.0	0.0	.	132	.	.	Atlas-SNP
DSCAML1	57453	hgsc.bcm.edu	hg19	11	117314605	117314605	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DSCAML1	NM_020693	exon21	c.A4039T	p.K1347X	CACCCTTGCCAGC	.	33.0	11.0	33.0	0.0	.	286	.	.	Atlas-SNP
TMPRSS13	84000	hgsc.bcm.edu	hg19	11	117789473	117789473	+	Silent	SNP	T	T	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TMPRSS13	NM_001206790	exon2	c.A102C	p.A34A	TGGAGATGCCCGG	.	72.0	19.0	68.0	0.0	.	75	.	.	Atlas-SNP
PHLDB1	23187	hgsc.bcm.edu	hg19	11	118502989	118502989	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PHLDB1	NM_001144758	exon9	c.A2355T	p.T785T	GGAGACAGGCATC	.	144.0	43.0	173.0	0.0	.	103	.	.	Atlas-SNP
CLMP	79827	hgsc.bcm.edu	hg19	11	122945480	122945480	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CLMP	NM_024769	exon6	c.T751A	p.L251M	ACACCAAGAGGAA	.	62.0	13.0	83.0	0.0	.	39	.	.	Atlas-SNP
MSANTD2	79684	hgsc.bcm.edu	hg19	11	124637132	124637132	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MSANTD2	NM_024631	exon4	c.A1464T	p.A488A	AGAGCCTGCGGAA	.	119.0	32.0	153.0	0.0	.	7	.	.	Atlas-SNP
SLC6A13	6540	hgsc.bcm.edu	hg19	12	333252	333252	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SLC6A13	NM_016615	exon11	c.A1217T	p.Y406F	TGAGGGTACATGT	.	75.0	17.0	114.0	0.0	.	62	.	.	Atlas-SNP
C12orf4	57102	hgsc.bcm.edu	hg19	12	4645227	4645227	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	C12orf4	NM_020374	exon2	c.G134T	p.G45V	AGACGTCCATGCA	.	201.0	52.0	228.0	0.0	.	58	.	.	Atlas-SNP
KLRC4-KLRK1	0	hgsc.bcm.edu	hg19	12	10532337	10532337	+	Missense_Mutation	SNP	A	A	T	rs377167821		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_001199805	exon9	c.T203A	p.I68N	ATAATAATGAAAC	.	135.0	37.0	182.0	0.0	.	.	.	.	Atlas-SNP
BICD1	636	hgsc.bcm.edu	hg19	12	32369351	32369351	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	BICD1	NM_001714	exon2	c.A384T	p.A128A	ACAGGCAGAAAAC	.	115.0	25.0	121.0	0.0	.	89	.	.	Atlas-SNP
LRRK2	120892	hgsc.bcm.edu	hg19	12	40761452	40761452	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	LRRK2	NM_198578	exon51	c.A7469T	p.Q2490L	AGATACAATCTTG	.	225.0	66.0	255.0	0.0	.	763	.	.	Atlas-SNP
ARID2	196528	hgsc.bcm.edu	hg19	12	46205216	46205216	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ARID2	NM_152641	exon4	c.C300G	p.Y100X	AAAGTACGAGAAA	.	79.0	43.0	99.0	0.0	.	311	.	.	Atlas-SNP
RACGAP1	29127	hgsc.bcm.edu	hg19	12	50388025	50388025	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	RACGAP1	NM_013277	exon14	c.A1228T	p.S410C	CTTTGCTGAGGAG	.	83.0	24.0	100.0	0.0	.	36	.	.	Atlas-SNP
ESPL1	9700	hgsc.bcm.edu	hg19	12	53684151	53684151	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ESPL1	NM_012291	exon24	c.G5262T	p.L1754L	AGTCCTGAATGAG	.	37.0	16.0	55.0	0.0	.	158	.	.	Atlas-SNP
TESPA1	9840	hgsc.bcm.edu	hg19	12	55356690	55356690	+	Missense_Mutation	SNP	T	T	A	rs61733026	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_001098815	exon9	c.A992T	p.Q331L	TCTTGCTGGAGGA	.	71.0	16.0	93.0	0.0	.	.	.	T|0.992;C|0.008	Atlas-SNP
TESPA1	9840	hgsc.bcm.edu	hg19	12	55357002	55357002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_001098815	exon9	c.T680C	p.L227P	ACAGCCAGTGTTT	.	51.0	8.0	55.0	0.0	.	.	.	.	Atlas-SNP
OR6C68	403284	hgsc.bcm.edu	hg19	12	55886887	55886887	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OR6C68	NM_001005519	exon1	c.T726C	p.H242H	TTCACATATTACT	.	62.0	30.0	90.0	0.0	.	36	.	.	Atlas-SNP
WIF1	11197	hgsc.bcm.edu	hg19	12	65514841	65514841	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	WIF1	NM_007191	exon1	c.A131T	p.Q44L	CTTGCCTGGTGAG	.	129.0	29.0	147.0	0.0	.	96	.	.	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	70983958	70983958	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PTPRB	NM_001109754	exon8	c.T1836A	p.L612L	CACTACAAGAGAC	.	110.0	32.0	114.0	0.0	.	676	.	.	Atlas-SNP
OTOGL	283310	hgsc.bcm.edu	hg19	12	80655748	80655748	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OTOGL	NM_173591	exon18	c.1863-1G>C	.	TTTCTAGTTCTCC	.	72.0	16.0	65.0	0.0	.	235	.	.	Atlas-SNP
SLC5A8	160728	hgsc.bcm.edu	hg19	12	101560282	101560282	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SLC5A8	NM_145913	exon12	c.A1516T	p.N506Y	GAACATTGTATAT	.	47.0	17.0	99.0	0.0	.	102	.	.	Atlas-SNP
STAB2	55576	hgsc.bcm.edu	hg19	12	104071229	104071229	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	STAB2	NM_017564	exon25	c.2647-2A>T	.	TCCTGCAGGCAGA	.	39.0	13.0	61.0	0.0	.	370	.	.	Atlas-SNP
CHST11	50515	hgsc.bcm.edu	hg19	12	105151144	105151144	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CHST11	NM_018413	exon3	c.T622A	p.F208I	ATCTCCTTCCACA	.	90.0	31.0	159.0	0.0	.	54	.	.	Atlas-SNP
MYO1H	283446	hgsc.bcm.edu	hg19	12	109876380	109876380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MYO1H	NM_001101421	exon22	c.G2201A	p.R734Q	TGGCTCGGAAGGC	.	45.0	14.0	70.0	0.0	.	98	.	.	Atlas-SNP
UBE3B	89910	hgsc.bcm.edu	hg19	12	109921745	109921745	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	UBE3B	NM_001270451	exon4	c.A241T	p.R81W	ATTGCCAGGAAAC	.	74.0	29.0	118.0	0.0	.	116	.	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	hg19	12	124298165	124298165	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DNAH10	NM_207437	exon19	c.A3245T	p.Y1082F	AGCTCTATAATCT	.	74.0	30.0	117.0	0.0	.	888	.	.	Atlas-SNP
EP400	57634	hgsc.bcm.edu	hg19	12	132464277	132464277	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	EP400	NM_015409	exon3	c.A1374T	p.G458G	GGCCGGAAGCACA	.	177.0	66.0	295.0	0.0	.	370	.	.	Atlas-SNP
POLE	5426	hgsc.bcm.edu	hg19	12	133219131	133219131	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	POLE	NM_006231	exon37	c.A4913T	p.N1638I	TCCAGGTTGAGGT	.	41.0	13.0	71.0	0.0	.	416	.	.	Atlas-SNP
TUBA3C	7278	hgsc.bcm.edu	hg19	13	19752513	19752513	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TUBA3C	NM_006001	exon3	c.A248C	p.Y83S	TGCCTATAGGTTC	.	69.0	26.0	131.0	0.0	.	166	.	.	Atlas-SNP
SKA3	221150	hgsc.bcm.edu	hg19	13	21734117	21734117	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SKA3	NM_145061	exon6	c.A839T	p.Y280F	TTGGTATATTCGG	.	43.0	20.0	101.0	0.0	.	76	.	.	Atlas-SNP
ATP12A	479	hgsc.bcm.edu	hg19	13	25283840	25283840	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ATP12A	NM_001185085	exon19	c.A2655T	p.G885G	CCTGGGAGCTTTC	.	52.0	19.0	104.0	0.0	.	172	.	.	Atlas-SNP
GPR12	2835	hgsc.bcm.edu	hg19	13	27333221	27333221	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	GPR12	NM_005288	exon2	c.A744T	p.K248N	GACCCCTTTCCGG	.	72.0	30.0	89.0	0.0	.	67	.	.	Atlas-SNP
CDX2	1045	hgsc.bcm.edu	hg19	13	28542904	28542904	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CDX2	NM_001265	exon1	c.C240T	p.Y80Y	GGGCGCGTAGCCA	.	43.0	22.0	54.0	0.0	.	30	.	.	Atlas-SNP
PDS5B	23047	hgsc.bcm.edu	hg19	13	33320210	33320210	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PDS5B	NM_015032	exon24	c.A2708T	p.Q903L	TAGAACAATATCA	.	47.0	15.0	76.0	0.0	.	141	.	.	Atlas-SNP
FAM216B	144809	hgsc.bcm.edu	hg19	13	43360937	43360937	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_182508	exon3	c.T138A	p.I46I	CAGCATTATGAGG	.	49.0	15.0	103.0	0.0	.	.	.	.	Atlas-SNP
TSC22D1	8848	hgsc.bcm.edu	hg19	13	45148297	45148297	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TSC22D1	NM_183422	exon1	c.A1914T	p.T638T	CATCTGTGTAGAA	.	44.0	10.0	52.0	0.0	.	88	.	.	Atlas-SNP
DACH1	1602	hgsc.bcm.edu	hg19	13	72440907	72440907	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DACH1	NM_080759	exon1	c.A1T	p.M1L	CTGCCATGGTCAC	.	129.0	23.0	173.0	0.0	.	123	.	.	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77755971	77755971	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MYCBP2	NM_015057	exon33	c.G4806T	p.L1602L	GGAAGTCAGCTTA	.	78.0	55.0	88.0	0.0	.	1029	.	.	Atlas-SNP
MYO16	23026	hgsc.bcm.edu	hg19	13	109535531	109535531	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MYO16	NM_001198950	exon13	c.T1550A	p.L517H	TCATCCTCAGGTG	.	39.0	13.0	55.0	0.0	.	285	.	.	Atlas-SNP
OR5AU1	390445	hgsc.bcm.edu	hg19	14	21624103	21624103	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OR5AU1	NM_001004731	exon1	c.A82T	p.S28C	TCTGACTGGGTTT	.	112.0	27.0	113.0	0.0	.	46	.	.	Atlas-SNP
MMP14	4323	hgsc.bcm.edu	hg19	14	23315040	23315040	+	Missense_Mutation	SNP	C	C	T	rs202185020		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MMP14	NM_004995	exon10	c.C1541T	p.P514L	GCCGGCCGGATGA	.	97.0	51.0	144.0	0.0	.	40	.	.	Atlas-SNP
SLC22A17	51310	hgsc.bcm.edu	hg19	14	23821009	23821009	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SLC22A17	NM_016609	exon3	c.T323A	p.I108N	CCCAAGATGAAGA	.	259.0	81.0	298.0	0.0	.	32	.	.	Atlas-SNP
RNF31	55072	hgsc.bcm.edu	hg19	14	24620416	24620416	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	RNF31	NM_017999	exon9	c.A1565T	p.Q522L	CTCTGCAGTGGTT	.	28.0	13.0	28.0	0.0	.	95	.	.	Atlas-SNP
NYNRIN	57523	hgsc.bcm.edu	hg19	14	24884806	24884806	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	NYNRIN	NM_025081	exon9	c.T3851A	p.L1284Q	ACCGCCTGCTCAC	.	50.0	11.0	71.0	0.0	.	120	.	.	Atlas-SNP
SIX4	51804	hgsc.bcm.edu	hg19	14	61186827	61186827	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SIX4	NM_017420	exon2	c.T1200A	p.I400I	GCTCACAATGTTT	.	110.0	36.0	128.0	0.0	.	69	.	.	Atlas-SNP
HIF1A	3091	hgsc.bcm.edu	hg19	14	62200973	62200973	+	Missense_Mutation	SNP	A	A	T	rs367767967	alternate_allele	TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	HIF1A	NM_001243084	exon8	c.A1070T	p.Q357L	AACCACAGTGCAT	.	107.0	32.0	129.0	0.0	.	120	.	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64408641	64408641	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SYNE2	NM_182914	exon5	c.C276T	p.I92I	TAGAATCAATATA	.	45.0	16.0	77.0	0.0	.	577	.	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64408680	64408680	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SYNE2	NM_182914	exon5	c.A315T	p.S105S	CCGATCAGTAAGT	.	46.0	19.0	65.0	0.0	.	577	.	.	Atlas-SNP
ZFYVE26	23503	hgsc.bcm.edu	hg19	14	68233158	68233158	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ZFYVE26	NM_015346	exon32	c.A5797T	p.S1933C	AGGCGCTGGGGGC	.	121.0	39.0	191.0	0.0	.	223	.	.	Atlas-SNP
PLEKHD1	400224	hgsc.bcm.edu	hg19	14	69967330	69967330	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PLEKHD1	NM_001161498	exon3	c.A280T	p.K94X	GAGCCCAAGGAAG	.	27.0	10.0	69.0	0.0	.	24	.	.	Atlas-SNP
POMT2	29954	hgsc.bcm.edu	hg19	14	77767555	77767555	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	POMT2	NM_013382	exon6	c.A694T	p.T232S	CGCCAGTCAGGCT	.	91.0	29.0	154.0	0.0	.	47	.	.	Atlas-SNP
SMEK1	55671	hgsc.bcm.edu	hg19	14	91942204	91942204	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SMEK1	NM_032560	exon8	c.A1217T	p.Q406L	TCATTCTGTTGTG	.	95.0	30.0	123.0	0.0	.	94	.	.	Atlas-SNP
CATSPERB	79820	hgsc.bcm.edu	hg19	14	92091187	92091187	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CATSPERB	NM_024764	exon18	c.A1907T	p.Y636F	AGTTTATAGACAT	.	82.0	37.0	137.0	0.0	.	114	.	.	Atlas-SNP
RIN3	79890	hgsc.bcm.edu	hg19	14	93118727	93118727	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	RIN3	NM_024832	exon6	c.A1333T	p.S445C	CCTCACAGCATGC	.	152.0	57.0	279.0	0.0	.	81	.	.	Atlas-SNP
BCL11B	64919	hgsc.bcm.edu	hg19	14	99642349	99642349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	BCL11B	NM_138576	exon4	c.C824T	p.A275V	GACTGCGCCACGG	.	129.0	39.0	167.0	0.0	.	108	.	.	Atlas-SNP
CDC42BPB	9578	hgsc.bcm.edu	hg19	14	103442078	103442078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CDC42BPB	NM_006035	exon11	c.G1450A	p.D484N	CTTTATCTCGGTT	.	59.0	41.0	91.0	0.0	.	123	.	.	Atlas-SNP
TDRD9	122402	hgsc.bcm.edu	hg19	14	104433111	104433111	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TDRD9	NM_153046	exon5	c.T708A	p.L236L	CCTGCTTCAGAAA	.	84.0	30.0	68.0	0.0	.	175	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105419689	105419689	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	AHNAK2	NM_138420	exon7	c.T2099A	p.V700E	GCAGACACATCCA	.	127.0	39.0	182.0	0.0	.	719	.	.	Atlas-SNP
GABRG3	2567	hgsc.bcm.edu	hg19	15	27222169	27222169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	GABRG3	NM_001270873	exon2	c.A74G	p.D25G	AAGAGGATGAATA	.	75.0	26.0	101.0	0.0	.	115	.	.	Atlas-SNP
THBS1	7057	hgsc.bcm.edu	hg19	15	39885868	39885868	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	THBS1	NM_003246	exon19	c.A3266T	p.Q1089L	CTGGCCAGGTAAG	.	58.0	24.0	110.0	0.0	.	106	.	.	Atlas-SNP
MYEF2	50804	hgsc.bcm.edu	hg19	15	48443350	48443350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MYEF2	NM_016132	exon14	c.G1325A	p.G442E	GCAAACCCTCCAA	.	239.0	84.0	337.0	1.0	.	67	.	.	Atlas-SNP
PRTG	283659	hgsc.bcm.edu	hg19	15	55967845	55967845	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PRTG	NM_173814	exon9	c.A1418G	p.N473S	GTGTCATTTCCGA	.	53.0	18.0	78.0	0.0	.	110	.	.	Atlas-SNP
TMEM202	338949	hgsc.bcm.edu	hg19	15	72700152	72700152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TMEM202	NM_001080462	exon5	c.C740A	p.A247D	CACCTGCTAAAGA	.	45.0	17.0	65.0	0.0	.	40	.	.	Atlas-SNP
RASGRF1	5923	hgsc.bcm.edu	hg19	15	79291113	79291113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	RASGRF1	NM_002891	exon19	c.C2849A	p.A950D	TTGGTGGCTGCTC	.	43.0	13.0	58.0	0.0	.	168	.	.	Atlas-SNP
HDGFRP3	0	hgsc.bcm.edu	hg19	15	83826759	83826759	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	HDGFRP3	NM_016073	exon3	c.A196G	p.K66E	ACTCCTTATATGG	.	49.0	21.0	83.0	0.0	.	17	.	.	Atlas-SNP
ADAMTSL3	57188	hgsc.bcm.edu	hg19	15	84694127	84694127	+	Missense_Mutation	SNP	G	G	T	rs143304781	alternate_allele	TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ADAMTSL3	NM_207517	exon27	c.G4595T	p.R1532L	AAGACCGGCCTCT	.	156.0	59.0	230.0	0.0	.	290	.	G|1.000;A|0.000	Atlas-SNP
IQGAP1	8826	hgsc.bcm.edu	hg19	15	91038004	91038004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	IQGAP1	NM_003870	exon36	c.A4688G	p.Y1563C	TGAAATATACAGC	.	182.0	69.0	267.0	1.0	.	140	.	.	Atlas-SNP
CHD2	1106	hgsc.bcm.edu	hg19	15	93552536	93552536	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CHD2	NM_001271	exon35	c.C4575T	p.H1525H	GGAGCACATCAAA	.	63.0	30.0	92.0	0.0	.	280	.	.	Atlas-SNP
IGF1R	3480	hgsc.bcm.edu	hg19	15	99251163	99251163	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	IGF1R	NM_000875	exon2	c.A467T	p.D156V	CTGTGGACTGGTC	.	91.0	42.0	164.0	0.0	.	147	.	.	Atlas-SNP
ABAT	18	hgsc.bcm.edu	hg19	16	8860122	8860122	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ABAT	NM_001127448	exon9	c.A598T	p.N200Y	ATGATTAACCAGG	.	73.0	42.0	85.0	0.0	.	46	.	.	Atlas-SNP
TMC5	79838	hgsc.bcm.edu	hg19	16	19468227	19468227	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TMC5	NM_024780	exon1	c.A199C	p.N67H	AAGGGTAACCAGG	.	71.0	24.0	92.0	0.0	.	169	.	.	Atlas-SNP
PDILT	204474	hgsc.bcm.edu	hg19	16	20396093	20396093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PDILT	NM_174924	exon3	c.G283A	p.G95R	CGATCCCATTCTT	.	75.0	44.0	95.0	0.0	.	120	.	.	Atlas-SNP
SCNN1G	6340	hgsc.bcm.edu	hg19	16	23208731	23208731	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SCNN1G	NM_001039	exon6	c.T1060A	p.S354T	GTCACCTCTATAG	.	80.0	14.0	114.0	0.0	.	82	.	.	Atlas-SNP
MVP	9961	hgsc.bcm.edu	hg19	16	29847023	29847023	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MVP	NM_017458	exon6	c.578-2A>T	.	TGGCCCAGGGGAA	.	102.0	25.0	135.0	0.0	.	80	.	.	Atlas-SNP
CD2BP2	10421	hgsc.bcm.edu	hg19	16	30364546	30364546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CD2BP2	NM_006110	exon6	c.G871T	p.G291W	CATCCCCCGTGTT	.	113.0	26.0	126.0	0.0	.	30	.	.	Atlas-SNP
TGFB1I1	7041	hgsc.bcm.edu	hg19	16	31484780	31484780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TGFB1I1	NM_001042454	exon2	c.T32C	p.L11P	CTGACCTGGAGAC	.	30.0	8.0	42.0	0.0	.	60	.	.	Atlas-SNP
ABCC12	94160	hgsc.bcm.edu	hg19	16	48158122	48158122	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ABCC12	NM_033226	exon11	c.1587+2T>A	.	CAGCTTACCTGTC	.	53.0	39.0	89.0	0.0	.	190	.	.	Atlas-SNP
MT1M	4499	hgsc.bcm.edu	hg19	16	56667700	56667700	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MT1M	NM_176870	exon3	c.T132A	p.C44X	CAAGTGTGCCCAC	.	26.0	8.0	41.0	0.0	.	13	.	.	Atlas-SNP
CDH11	1009	hgsc.bcm.edu	hg19	16	64981610	64981610	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CDH11	NM_001797	exon13	c.A2287T	p.T763S	AATCTGTGGTGGC	.	141.0	36.0	172.0	0.0	.	260	.	.	Atlas-SNP
CMTM4	146223	hgsc.bcm.edu	hg19	16	66656097	66656097	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CMTM4	NM_178818	exon4	c.A491T	p.Y164F	ACTGCATATGCCG	.	45.0	29.0	70.0	0.0	.	19	.	.	Atlas-SNP
FHOD1	29109	hgsc.bcm.edu	hg19	16	67264347	67264347	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	FHOD1	NM_013241	exon19	c.T2921C	p.M974T	AACTGCATGATGC	.	109.0	29.0	86.0	0.0	.	86	.	.	Atlas-SNP
PLEKHG4	25894	hgsc.bcm.edu	hg19	16	67319047	67319047	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	PLEKHG4,NS,carcinoma,0,1	PLEKHG4	NM_001129728	exon13	c.A2124T	p.G708G	GGCTGGAGGAGGT	.	55.0	31.0	86.0	0.0	.	94	.	.	Atlas-SNP
SLC7A6OS	84138	hgsc.bcm.edu	hg19	16	68344261	68344261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SLC7A6OS	NM_032178	exon2	c.G448A	p.A150T	AGGCGGCTTCAGG	.	134.0	33.0	145.0	0.0	.	22	.	.	Atlas-SNP
OR1A2	26189	hgsc.bcm.edu	hg19	17	3101071	3101071	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OR1A2	NM_012352	exon1	c.T259A	p.L87M	CATCTCTTGGGGA	.	85.0	30.0	149.0	0.0	.	52	.	.	Atlas-SNP
ZNF594	84622	hgsc.bcm.edu	hg19	17	5086891	5086891	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ZNF594	NM_032530	exon2	c.A661T	p.K221X	TTCCCTTAAAAGC	.	77.0	20.0	97.0	0.0	.	89	.	.	Atlas-SNP
PITPNM3	83394	hgsc.bcm.edu	hg19	17	6373607	6373607	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PITPNM3	NM_031220	exon13	c.A1746T	p.T582T	CACGTCTGTGGAC	.	43.0	13.0	54.0	0.0	.	91	.	.	Atlas-SNP
TXNDC17	84817	hgsc.bcm.edu	hg19	17	6546320	6546320	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TXNDC17	NM_032731	exon4	c.T353G	p.M118R	TGGAAATGTTGTT	.	81.0	9.0	95.0	0.0	.	10	.	.	Atlas-SNP
TEKT1	83659	hgsc.bcm.edu	hg19	17	6718508	6718508	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TEKT1	NM_053285	exon5	c.T603A	p.S201S	GTTCTCAGAATAT	.	97.0	29.0	127.0	0.0	.	49	.	.	Atlas-SNP
NEURL4	84461	hgsc.bcm.edu	hg19	17	7227004	7227004	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	NEURL4	NM_001005408	exon13	c.A2300T	p.Q767L	ATCTTCTGAATGA	.	84.0	20.0	96.0	0.0	.	192	.	.	Atlas-SNP
GUCY2D	3000	hgsc.bcm.edu	hg19	17	7912843	7912843	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	GUCY2D	NM_000180	exon8	c.A1688T	p.K563M	GGCTGAAGAAATT	.	86.0	26.0	125.0	0.0	.	82	.	.	Atlas-SNP
MYH4	4622	hgsc.bcm.edu	hg19	17	10357033	10357033	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MYH4	NM_017533	exon23	c.T2861A	p.L954H	TTCTTGAGCTCTG	.	141.0	30.0	146.0	0.0	.	349	.	.	Atlas-SNP
MYH4	4622	hgsc.bcm.edu	hg19	17	10357189	10357189	+	Nonsense_Mutation	SNP	A	A	T	rs138202203	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MYH4	NM_017533	exon23	c.T2705A	p.L902X	TCAGCCAAGGCAT	.	92.0	22.0	126.0	0.0	.	349	.	A|1.000;G|0.000	Atlas-SNP
MYH1	4619	hgsc.bcm.edu	hg19	17	10409339	10409339	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MYH1	NM_005963	exon18	c.T2046A	p.T682T	AGTTTTAGTTTCA	.	208.0	49.0	204.0	0.0	.	403	.	.	Atlas-SNP
BLMH	642	hgsc.bcm.edu	hg19	17	28616480	28616480	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	BLMH	NM_000386	exon3	c.T232A	p.C78S	TCAGACAAGAAAA	.	181.0	60.0	193.0	0.0	.	42	.	.	Atlas-SNP
SLFN12	55106	hgsc.bcm.edu	hg19	17	33738498	33738498	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SLFN12	NM_018042	exon4	c.A1596T	p.K532N	AAGGGCTTTCAGC	.	162.0	30.0	134.0	0.0	.	56	.	.	Atlas-SNP
MYO19	80179	hgsc.bcm.edu	hg19	17	34859822	34859822	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MYO19	NM_001163735	exon21	c.C1944A	p.T648T	ATGGATGGTCTCC	.	29.0	10.0	32.0	0.0	.	130	.	.	Atlas-SNP
ARL5C	390790	hgsc.bcm.edu	hg19	17	37313165	37313165	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ARL5C	NM_001143968	exon6	c.T522A	p.S174S	GGCCTGAGATTCC	.	122.0	24.0	91.0	0.0	.	3	.	.	Atlas-SNP
KRTAP9-3	83900	hgsc.bcm.edu	hg19	17	39388765	39388765	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	KRTAP9-3	NM_031962	exon1	c.T12A	p.C4X	CCACTGTTGCTCC	.	248.0	35.0	191.0	0.0	.	11	.	.	Atlas-SNP
KRT35	3886	hgsc.bcm.edu	hg19	17	39635249	39635249	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	KRT35	NM_002280	exon5	c.712-2A>T	.	ACTTCCTATAGCA	.	81.0	7.0	73.0	0.0	.	58	.	.	Atlas-SNP
CRHR1	1394	hgsc.bcm.edu	hg19	17	43893924	43893924	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CRHR1	NM_001145148	exon3	c.T217A	p.Y73N	TTTTTCTATGGTG	.	77.0	19.0	54.0	0.0	.	48	.	.	Atlas-SNP
OSBPL7	114881	hgsc.bcm.edu	hg19	17	45888020	45888020	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OSBPL7	NM_145798	exon18	c.A1820T	p.K607M	CAGAACTTGTTCT	.	125.0	28.0	110.0	0.0	.	65	.	.	Atlas-SNP
HOXB8	3218	hgsc.bcm.edu	hg19	17	46691811	46691811	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	HOXB8	NM_024016	exon1	c.T256A	p.Y86N	AGCCGTAGAAATT	.	113.0	24.0	106.0	0.0	.	26	.	.	Atlas-SNP
WFIKKN2	124857	hgsc.bcm.edu	hg19	17	48917022	48917022	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	WFIKKN2	NM_175575	exon2	c.A373T	p.I125F	TGTGACATCTGGG	.	144.0	44.0	179.0	0.0	.	69	.	.	Atlas-SNP
TRIM25	7706	hgsc.bcm.edu	hg19	17	54981763	54981763	+	Silent	SNP	T	T	A	rs200224902	by1000genomes;alternate_allele	TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TRIM25	NM_005082	exon3	c.A780T	p.T260T	CTTCCTTGTCGAG	.	125.0	32.0	101.0	0.0	.	52	.	T|1.000;C|0.000	Atlas-SNP
CEP112	201134	hgsc.bcm.edu	hg19	17	64059102	64059102	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CEP112	NM_001199165	exon11	c.A1053T	p.L351L	ATTATTTAGAGAT	.	68.0	6.0	67.0	0.0	.	192	.	.	Atlas-SNP
TNRC6C	57690	hgsc.bcm.edu	hg19	17	76047470	76047470	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TNRC6C	NM_018996	exon4	c.A2327T	p.E776V	GGGTCGAGACGCC	.	101.0	21.0	88.0	0.0	.	173	.	.	Atlas-SNP
CYTH1	9267	hgsc.bcm.edu	hg19	17	76677126	76677126	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CYTH1	NM_004762	exon12	c.892-2A>T	.	TTATCCTACAGAA	.	133.0	27.0	86.0	0.0	.	36	.	.	Atlas-SNP
SLC38A10	124565	hgsc.bcm.edu	hg19	17	79256084	79256084	+	Missense_Mutation	SNP	T	T	A	rs146598954	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SLC38A10	NM_001037984	exon5	c.A406T	p.I136F	GCACGATGCACAG	.	243.0	46.0	196.0	0.0	.	133	.	T|0.995;C|0.005	Atlas-SNP
ARHGDIA	396	hgsc.bcm.edu	hg19	17	79826836	79826836	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ARHGDIA	NM_004309	exon6	c.C531G	p.I177M	GGACTTGATGCTG	.	87.0	9.0	80.0	0.0	.	14	.	.	Atlas-SNP
MYOM1	8736	hgsc.bcm.edu	hg19	18	3067424	3067424	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MYOM1	NM_003803	exon38	c.A4894T	p.T1632S	TGATGGTGAAGTA	.	65.0	27.0	144.0	0.0	.	192	.	.	Atlas-SNP
MYOM1	8736	hgsc.bcm.edu	hg19	18	3086130	3086130	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MYOM1	NM_003803	exon30	c.A4157T	p.E1386V	TGAGTCTCCTTCT	.	52.0	16.0	63.0	0.0	.	192	.	.	Atlas-SNP
DLGAP1	9229	hgsc.bcm.edu	hg19	18	3880047	3880047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DLGAP1	NM_001242761	exon4	c.C22T	p.R8C	GGCTGCGGCTGCC	.	11.0	5.0	23.0	0.0	.	201	.	.	Atlas-SNP
EPB41L3	23136	hgsc.bcm.edu	hg19	18	5423442	5423442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	EPB41L3,colon,carcinoma,0,2	EPB41L3	NM_012307	exon11	c.G1274A	p.R425H	GCTGGGCGATCTA	.	118.0	33.0	166.0	0.0	.	222	.	.	Atlas-SNP
ANKRD12	23253	hgsc.bcm.edu	hg19	18	9258388	9258388	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ANKRD12	NM_015208	exon9	c.A5123T	p.H1708L	AAATGCATAAATA	.	57.0	22.0	111.0	0.0	.	167	.	.	Atlas-SNP
IMPACT	55364	hgsc.bcm.edu	hg19	18	22017984	22017984	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	IMPACT	NM_018439	exon5	c.A347G	p.K116R	TACAAAAATCTCA	.	298.0	108.0	522.0	0.0	.	37	.	.	Atlas-SNP
CCDC178	374864	hgsc.bcm.edu	hg19	18	30913332	30913332	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_001105528	exon9	c.A685T	p.I229L	ATTCTATAACATC	.	26.0	8.0	53.0	0.0	.	.	.	.	Atlas-SNP
CCDC178	374864	hgsc.bcm.edu	hg19	18	30926215	30926215	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_001105528	exon8	c.A618T	p.S206S	CCAGACTGACCAA	.	66.0	25.0	132.0	0.0	.	.	.	.	Atlas-SNP
NOL4	8715	hgsc.bcm.edu	hg19	18	31523123	31523123	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	NOL4	NM_003787	exon9	c.A1448T	p.H483L	GTAAGGTGGGAAG	.	34.0	11.0	72.0	0.0	.	139	.	.	Atlas-SNP
LOXHD1	125336	hgsc.bcm.edu	hg19	18	44068976	44068976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	LOXHD1	NM_144612	exon37	c.C5822A	p.A1941D	GCACAGGCAAAGT	.	47.0	19.0	70.0	0.0	.	367	.	.	Atlas-SNP
BSG	682	hgsc.bcm.edu	hg19	19	579507	579507	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	BSG	NM_001728	exon3	c.A423T	p.T141T	CGGCACAGTCTTC	.	69.0	18.0	82.0	0.0	.	48	.	.	Atlas-SNP
PRSS57	400668	hgsc.bcm.edu	hg19	19	691985	691985	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PRSS57	NM_214710	exon3	c.T254A	p.L85Q	ACCACCAGGCCAG	.	74.0	24.0	95.0	0.0	.	18	.	.	Atlas-SNP
ZFR2	23217	hgsc.bcm.edu	hg19	19	3823272	3823272	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ZFR2	NM_015174	exon8	c.A1343T	p.Q448L	ACCGGCTGCGCAT	.	41.0	11.0	66.0	0.0	.	63	.	.	Atlas-SNP
FUT5	2527	hgsc.bcm.edu	hg19	19	5867550	5867550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	FUT5,NS,adenocarcinoma,0,1	FUT5	NM_002034	exon2	c.C187T	p.R63C	GGCAGCGGGACCC	.	116.0	33.0	99.0	1.0	.	29	.	.	Atlas-SNP
CLPP	8192	hgsc.bcm.edu	hg19	19	6366366	6366366	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CLPP	NM_006012	exon5	c.A653T	p.Q218L	GCCTGCAGGTGAT	.	46.0	12.0	88.0	0.0	.	15	.	.	Atlas-SNP
PNPLA6	10908	hgsc.bcm.edu	hg19	19	7625969	7625969	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PNPLA6	NM_001166111	exon32	c.A3916T	p.S1306C	CCCACGAGCTATG	.	50.0	26.0	56.0	0.0	.	163	.	.	Atlas-SNP
PRAM1	84106	hgsc.bcm.edu	hg19	19	8563756	8563756	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PRAM1	NM_032152	exon2	c.C936T	p.A312A	GAATTCGGCCGGC	.	105.0	35.0	79.0	0.0	.	53	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9061256	9061256	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MUC16	NM_024690	exon3	c.T26190A	p.S8730S	CATTCCAGAAAGA	.	99.0	35.0	121.0	0.0	.	4315	.	.	Atlas-SNP
TNPO2	30000	hgsc.bcm.edu	hg19	19	12821577	12821577	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TNPO2	NM_013433	exon12	c.A1128T	p.S376S	AGCCGCTGAGCAC	.	82.0	21.0	66.0	0.0	.	108	.	.	Atlas-SNP
NDUFB7	4713	hgsc.bcm.edu	hg19	19	14677729	14677729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	NDUFB7	NM_004146	exon2	c.G129T	p.Q43H	CTCCTGCTGTGTG	.	27.0	10.0	31.0	0.0	.	14	.	.	Atlas-SNP
OR7A17	26333	hgsc.bcm.edu	hg19	19	14991448	14991448	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	OR7A17	NM_030901	exon1	c.C720A	p.T240T	TGCACAGGTGGAA	.	84.0	22.0	111.0	0.0	.	37	.	.	Atlas-SNP
MYO9B	4650	hgsc.bcm.edu	hg19	19	17256246	17256246	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MYO9B	NM_001130065	exon3	c.A880T	p.S294C	AACTCCAGCCGGT	.	104.0	32.0	120.0	0.0	.	264	.	.	Atlas-SNP
RPL18A	6142	hgsc.bcm.edu	hg19	19	17973829	17973829	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	RPL18A	NM_000980	exon4	c.A431T	p.Q144L	TCAAGCAGTTCCA	.	95.0	35.0	90.0	0.0	.	15	.	.	Atlas-SNP
SLC5A5	6528	hgsc.bcm.edu	hg19	19	17988625	17988625	+	Silent	SNP	G	G	T	rs148887708		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	SLC5A5,colon,carcinoma,0,2	SLC5A5	NM_000453	exon6	c.G792T	p.A264A	CCAGGCGCAGGTG	.	88.0	30.0	76.0	1.0	.	67	.	G|1.000;T|0.000	Atlas-SNP
COMP	1311	hgsc.bcm.edu	hg19	19	18899478	18899478	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	COMP	NM_000095	exon7	c.T685A	p.C229S	CGGGGCAGAAGCG	.	39.0	13.0	52.0	0.0	.	62	.	.	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	hg19	19	22156559	22156559	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ZNF208	NM_007153	exon4	c.A1277T	p.K426I	TCACATTTGTAGG	.	77.0	21.0	93.0	0.0	.	817	.	.	Atlas-SNP
ZNF728	388523	hgsc.bcm.edu	hg19	19	23171133	23171133	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_001267716	exon2	c.T124A	p.F42I	CCAGGAAGACCAG	.	72.0	14.0	98.0	0.0	.	.	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	38964354	38964354	+	Missense_Mutation	SNP	A	A	T	rs185821937	by1000genomes;alternate_allele	TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	RYR1	NM_001042723	exon28	c.A4103T	p.Q1368L	AGGCGCAGCCCGC	.	250.0	73.0	284.0	0.0	.	708	.	A|1.000;C|0.000	Atlas-SNP
CEACAM5	1048	hgsc.bcm.edu	hg19	19	42223902	42223902	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CEACAM5	NM_004363	exon7	c.A1546T	p.K516X	GAGGACAAGGATG	.	72.0	18.0	109.0	0.0	.	84	.	.	Atlas-SNP
CEACAM3	1084	hgsc.bcm.edu	hg19	19	42312947	42312947	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CEACAM3	NM_001815	exon3	c.T521A	p.L174Q	GTTTCCTGCTCCT	.	83.0	14.0	109.0	0.0	.	37	.	.	Atlas-SNP
CEACAM1	634	hgsc.bcm.edu	hg19	19	43026217	43026217	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CEACAM1	NM_001184816	exon3	c.A562T	p.S188C	TGGGACTGACCGG	.	86.0	25.0	112.0	0.0	.	43	.	.	Atlas-SNP
PSG6	5675	hgsc.bcm.edu	hg19	19	43414973	43414973	+	Missense_Mutation	SNP	T	T	A	rs1058674	byhapmap;alternate_allele	TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PSG6	NM_001031850	exon3	c.A465T	p.L155F	GGGGTTTAAGTTG	.	59.0	16.0	100.0	0.0	.	89	.	T|1.000;|0.000	Atlas-SNP
PSG2	5670	hgsc.bcm.edu	hg19	19	43576010	43576010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PSG2	NM_031246	exon4	c.C806T	p.A269V	TACTGTGCCGGTG	.	135.0	40.0	136.0	0.0	.	84	.	.	Atlas-SNP
MARK4	57787	hgsc.bcm.edu	hg19	19	45790824	45790824	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MARK4	NM_001199867	exon13	c.A1396T	p.S466C	AGTGGGAGTCGAG	.	300.0	93.0	359.0	0.0	.	132	.	.	Atlas-SNP
GLTSCR1	29998	hgsc.bcm.edu	hg19	19	48182982	48182982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	GLTSCR1	NM_015711	exon6	c.G555T	p.Q185H	GCCCCAGGACGTG	.	49.0	9.0	62.0	0.0	.	79	.	.	Atlas-SNP
GLTSCR1	29998	hgsc.bcm.edu	hg19	19	48182983	48182983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	GLTSCR1	NM_015711	exon6	c.G556T	p.D186Y	CCCCAGGACGTGG	.	48.0	8.0	62.0	0.0	.	79	.	.	Atlas-SNP
SCAF1	58506	hgsc.bcm.edu	hg19	19	50156008	50156008	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SCAF1	NM_021228	exon7	c.A2362T	p.R788W	AGGGACAGGGACA	.	114.0	28.0	116.0	0.0	.	78	.	.	Atlas-SNP
SIGLEC11	114132	hgsc.bcm.edu	hg19	19	50453402	50453402	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SIGLEC11	NM_052884	exon11	c.A1922T	p.E641V	TGGAGCTCCTGCT	.	64.0	21.0	68.0	0.0	.	70	.	.	Atlas-SNP
IZUMO2	126123	hgsc.bcm.edu	hg19	19	50662761	50662761	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	IZUMO2	NM_152358	exon3	c.T384A	p.Y128X	TAATTCATATGAA	.	193.0	63.0	217.0	0.0	.	26	.	.	Atlas-SNP
KLK10	5655	hgsc.bcm.edu	hg19	19	51520376	51520376	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	KLK10	NM_145888	exon3	c.T259A	p.C87S	TTCCGCAGTGCGC	.	138.0	36.0	126.0	0.0	.	32	.	.	Atlas-SNP
ZNF615	284370	hgsc.bcm.edu	hg19	19	52497458	52497458	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ZNF615	NM_001199324	exon7	c.A904T	p.S302C	ATTGGCTACATGT	.	52.0	16.0	67.0	0.0	.	111	.	.	Atlas-SNP
ZNF415	55786	hgsc.bcm.edu	hg19	19	53611940	53611940	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ZNF415	NM_018355	exon4	c.C1358A	p.S453X	AAGTTCGAATGCA	.	100.0	21.0	91.0	0.0	.	68	.	.	Atlas-SNP
ZNF665	79788	hgsc.bcm.edu	hg19	19	53668306	53668306	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ZNF665	NM_024733	exon4	c.T1437A	p.I479I	AGAATGAATTCCC	.	63.0	21.0	79.0	0.0	.	136	.	.	Atlas-SNP
PRKCG	5582	hgsc.bcm.edu	hg19	19	54401692	54401692	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PRKCG	NM_002739	exon11	c.1093-2A>T	.	GCGCATAGGTGAT	.	151.0	46.0	163.0	0.0	.	246	.	.	Atlas-SNP
NLRP2	55655	hgsc.bcm.edu	hg19	19	55512159	55512159	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	NLRP2	NM_017852	exon13	c.A3082T	p.N1028Y	GAACTCAATAAGC	.	88.0	19.0	92.0	0.0	.	161	.	.	Atlas-SNP
NRSN2	80023	hgsc.bcm.edu	hg19	20	333979	333979	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	NRSN2	NM_024958	exon4	c.A315T	p.A105A	GCGGGCAGCCGAC	.	97.0	18.0	79.0	0.0	.	20	.	.	Atlas-SNP
ANKEF1	63926	hgsc.bcm.edu	hg19	20	10033917	10033917	+	Silent	SNP	A	A	G	rs199615882		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_198798	exon8	c.A2028G	p.K676K	TAAGAAAGAAGAG	.	165.0	68.0	126.0	0.0	.	.	.	A|0.999;G|0.001	Atlas-SNP
SUN5	140732	hgsc.bcm.edu	hg19	20	31572988	31572988	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SUN5	NM_080675	exon12	c.A901T	p.M301L	CCTCCATGCCCTG	.	106.0	18.0	109.0	0.0	.	63	.	.	Atlas-SNP
BPIFA1	51297	hgsc.bcm.edu	hg19	20	31829908	31829908	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	.	NM_016583	exon7	c.T713A	p.L238Q	TCACCCTGGTGCA	.	69.0	9.0	85.0	0.0	.	.	.	.	Atlas-SNP
EMILIN3	90187	hgsc.bcm.edu	hg19	20	39993757	39993757	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	EMILIN3	NM_052846	exon2	c.A208C	p.I70L	GTAGGATGCAGGT	.	68.0	12.0	75.0	0.0	.	63	.	.	Atlas-SNP
CHD6	84181	hgsc.bcm.edu	hg19	20	40127977	40127977	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CHD6	NM_032221	exon6	c.A873T	p.A291A	GATGTTTGCATCA	.	62.0	8.0	41.0	0.0	.	312	.	.	Atlas-SNP
BCAS1	8537	hgsc.bcm.edu	hg19	20	52601945	52601945	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	BCAS1	NM_003657	exon7	c.A1021T	p.K341X	ATCCTTTGGAATT	.	218.0	56.0	159.0	0.0	.	77	.	.	Atlas-SNP
ZBP1	81030	hgsc.bcm.edu	hg19	20	56188317	56188317	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ZBP1	NM_001160419	exon5	c.A572T	p.Q191L	CCATTCTGGCAGA	.	82.0	17.0	71.0	0.0	.	65	.	.	Atlas-SNP
LAMA5	3911	hgsc.bcm.edu	hg19	20	60909582	60909582	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	LAMA5	NM_005560	exon21	c.A2578T	p.S860C	ACTCGCTGCAGGT	.	115.0	25.0	117.0	0.0	.	268	.	.	Atlas-SNP
DIDO1	11083	hgsc.bcm.edu	hg19	20	61537425	61537425	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DIDO1	NM_080797	exon6	c.A1402T	p.K468X	GTCTCTTGTGCAC	.	29.0	6.0	41.0	0.0	.	321	.	.	Atlas-SNP
SAMSN1	64092	hgsc.bcm.edu	hg19	21	15954542	15954542	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SAMSN1	NM_001256370	exon2	c.T176A	p.V59D	GGTCCAACTTGTG	.	61.0	24.0	127.0	0.0	.	112	.	.	Atlas-SNP
JAM2	58494	hgsc.bcm.edu	hg19	21	27062287	27062287	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	JAM2	NM_021219	exon3	c.241+2T>C	.	TCAAGGTAAGCAG	.	32.0	9.0	70.0	0.0	.	33	.	.	Atlas-SNP
APP	351	hgsc.bcm.edu	hg19	21	27269958	27269958	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	APP	NM_000484	exon16	c.A1991T	p.E664V	ATCTCCTCCGTCT	.	45.0	12.0	104.0	0.0	.	90	.	.	Atlas-SNP
PDE9A	5152	hgsc.bcm.edu	hg19	21	44192597	44192597	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PDE9A	NM_002606	exon19	c.A1735T	p.R579X	AAGTCCAGAGAGA	.	56.0	25.0	94.0	0.0	.	69	.	.	Atlas-SNP
CDC45	8318	hgsc.bcm.edu	hg19	22	19495303	19495303	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CDC45	NM_001178010	exon13	c.A1067T	p.Q356L	TGAAGCAGGTGAA	.	63.0	26.0	100.0	0.0	.	48	.	.	Atlas-SNP
GGT5	2687	hgsc.bcm.edu	hg19	22	24629895	24629895	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	GGT5	NM_001099782	exon2	c.A251T	p.Q84L	ATGCTCTGAGGGT	.	67.0	28.0	120.0	0.0	.	61	.	.	Atlas-SNP
PLA2G3	50487	hgsc.bcm.edu	hg19	22	31536135	31536135	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.,2	PLA2G3	NM_015715	exon1	c.A206T	p.Q69L	CATGACTGCAGCC	.	34.0	14.0	43.0	0.0	.	85	.	.	Atlas-SNP
DEPDC5	9681	hgsc.bcm.edu	hg19	22	32293526	32293526	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DEPDC5	NM_001242896	exon40	c.A4262T	p.E1421V	TTTTGGAGGGGCC	.	65.0	22.0	110.0	0.0	.	266	.	.	Atlas-SNP
CSF2RB	1439	hgsc.bcm.edu	hg19	22	37318309	37318309	+	Silent	SNP	C	C	T	rs200588212	bycluster;by1000genomes;alternate_allele	TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CSF2RB	NM_000395	exon2	c.C60T	p.S20S	GCGCAGCCTGGCA	.	77.0	28.0	108.0	0.0	.	104	.	C|0.999;A|0.001	Atlas-SNP
PICK1	9463	hgsc.bcm.edu	hg19	22	38461007	38461007	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PICK1	NM_012407	exon4	c.154-2A>C	.	ACCCACAGGTATT	.	66.0	23.0	135.0	0.0	.	30	.	.	Atlas-SNP
PARVB	29780	hgsc.bcm.edu	hg19	22	44547368	44547368	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PARVB	NM_001003828	exon11	c.C879A	p.L293L	GTCTCTCATCACT	.	38.0	15.0	92.0	0.0	.	44	.	.	Atlas-SNP
IL17REL	400935	hgsc.bcm.edu	hg19	22	50439576	50439576	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	IL17REL	NM_001001694	exon4	c.T44A	p.M15K	CACTGCATGGCAG	.	103.0	41.0	153.0	0.0	.	21	.	.	Atlas-SNP
ASMTL	8623	hgsc.bcm.edu	hg19	X	1531641	1531641	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ASMTL	NM_004192	exon12	c.C1629T	p.A543A	GCTCTCGGCGACC	.	501.0	96.0	715.0	1.0	.	56	.	.	Atlas-SNP
ARHGAP6	395	hgsc.bcm.edu	hg19	X	11204488	11204488	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ARHGAP6	NM_006125	exon5	c.T1141A	p.L381I	GTTGTAAAGCTTC	.	62.0	31.0	67.0	0.0	.	130	.	.	Atlas-SNP
TLR7	51284	hgsc.bcm.edu	hg19	X	12906214	12906214	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TLR7	NM_016562	exon3	c.T2587A	p.Y863N	CACCTCTATTTCT	.	94.0	52.0	62.0	0.0	.	125	.	.	Atlas-SNP
BEND2	139105	hgsc.bcm.edu	hg19	X	18183181	18183181	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	BEND2	NM_153346	exon14	c.T2348A	p.L783Q	TGCTCCAGCTCTG	.	46.0	20.0	39.0	0.0	.	108	.	.	Atlas-SNP
MAP3K15	389840	hgsc.bcm.edu	hg19	X	19418698	19418698	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MAP3K15	NM_001001671	exon14	c.T1928A	p.L643X	ACCTCCAAGGTGT	.	25.0	6.0	19.0	0.0	.	108	.	.	Atlas-SNP
POLA1	5422	hgsc.bcm.edu	hg19	X	24757522	24757522	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	POLA1	NM_016937	exon20	c.A2053T	p.T685S	AATGCTACCTGTG	.	134.0	54.0	126.0	0.0	.	117	.	.	Atlas-SNP
SHROOM4	57477	hgsc.bcm.edu	hg19	X	50377203	50377203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SHROOM4	NM_020717	exon4	c.C1870A	p.Q624K	GCTCCTGGGTCTC	.	75.0	68.0	79.0	0.0	.	171	.	.	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53674399	53674399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	HUWE1	NM_031407	exon6	c.A263G	p.Q88R	TTCAGTTGCTCTC	.	126.0	106.0	132.0	0.0	.	724	.	.	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53674402	53674402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	HUWE1	NM_031407	exon6	c.A260G	p.E87G	AGTTGCTCTCTTT	.	124.0	103.0	132.0	0.0	.	724	.	.	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53674404	53674404	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	HUWE1	NM_031407	exon6	c.A258G	p.R86R	TTGCTCTCTTTCT	.	125.0	104.0	133.0	0.0	.	724	.	.	Atlas-SNP
TEX11	56159	hgsc.bcm.edu	hg19	X	70072999	70072999	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TEX11	NM_001003811	exon8	c.T455A	p.L152Q	TGCTCCAGACTCT	.	82.0	25.0	60.0	0.0	.	132	.	.	Atlas-SNP
ATRX	546	hgsc.bcm.edu	hg19	X	76872153	76872153	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ATRX	NM_000489	exon22	c.G5494C	p.E1832Q	CATATTCGTGTTT	.	139.0	121.0	101.0	0.0	.	833	.	.	Atlas-SNP
CENPI	2491	hgsc.bcm.edu	hg19	X	100402946	100402946	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CENPI	NM_006733	exon19	c.C1890T	p.F630F	AGAGTTCAATTTC	.	149.0	67.0	144.0	0.0	.	70	.	.	Atlas-SNP
CENPI	2491	hgsc.bcm.edu	hg19	X	100402947	100402947	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	CENPI	NM_006733	exon19	c.A1891C	p.N631H	GAGTTCAATTTCA	.	149.0	66.0	146.0	0.0	.	70	.	.	Atlas-SNP
NXF3	56000	hgsc.bcm.edu	hg19	X	102338424	102338424	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	NXF3	NM_022052	exon5	c.T442A	p.Y148N	TTTCATAGTGAAA	.	78.0	37.0	69.0	0.0	.	81	.	.	Atlas-SNP
ESX1	80712	hgsc.bcm.edu	hg19	X	103499021	103499021	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ESX1	NM_153448	exon2	c.A320T	p.K107M	TCTTGCTTCAGCT	.	69.0	28.0	70.0	0.0	.	57	.	.	Atlas-SNP
IL1RAPL2	26280	hgsc.bcm.edu	hg19	X	105011036	105011036	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	IL1RAPL2	NM_017416	exon11	c.A1443T	p.R481S	TCTCAGACGGGGA	.	234.0	104.0	198.0	0.0	.	105	.	.	Atlas-SNP
COL4A5	1287	hgsc.bcm.edu	hg19	X	107823970	107823970	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	COL4A5	NM_033380	exon15	c.891+2T>A	.	AAAGAGTAAGTGA	.	300.0	130.0	273.0	0.0	.	262	.	.	Atlas-SNP
GUCY2F	2986	hgsc.bcm.edu	hg19	X	108631785	108631785	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	GUCY2F	NM_001522	exon15	c.T2889A	p.S963S	GCCCACAGAGCTC	.	127.0	50.0	96.0	0.0	.	178	.	.	Atlas-SNP
KIAA1210	57481	hgsc.bcm.edu	hg19	X	118230582	118230582	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	KIAA1210	NM_020721	exon8	c.A1141T	p.S381C	TGCTACTGGTAGA	.	121.0	61.0	100.0	0.0	.	171	.	.	Atlas-SNP
GPR112	139378	hgsc.bcm.edu	hg19	X	135431162	135431162	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	GPR112	NM_153834	exon6	c.A5297T	p.Q1766L	ATATTCAGGTTTC	.	118.0	53.0	94.0	0.0	.	459	.	.	Atlas-SNP
GPR101	83550	hgsc.bcm.edu	hg19	X	136113821	136113821	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	GPR101	NM_054021	exon1	c.T13A	p.C5S	TGGTGCAGGTGGA	.	20.0	9.0	23.0	0.0	.	96	.	.	Atlas-SNP
ATP2B3	492	hgsc.bcm.edu	hg19	X	152845550	152845550	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ATP2B3	NM_001001344	exon20	c.A3457T	p.T1153S	GACTACACCCACA	.	140.0	59.0	119.0	0.0	.	552	.	.	Atlas-SNP
DNASE1L1	1774	hgsc.bcm.edu	hg19	X	153631374	153631374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	DNASE1L1	NM_006730	exon7	c.G683A	p.R228H	ACGACGCGGTCAT	.	53.0	47.0	47.0	0.0	.	20	.	.	Atlas-SNP
PDRG1	81572	hgsc.bcm.edu	hg19	20	30539689	30539689	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	PDRG1	NM_030815	exon1	c.77delA	p.D26fs	.	.	159.0	36.0	150.0	0.0	.	17	.	.	Atlas-Indel,Pindel
API5	8539	hgsc.bcm.edu	hg19	11	43350345	43350346	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	API5	NM_006595	exon9	c.1029_1030insTA	p.V343fs	.	.	217.0	53.0	278.0	0.0	.	91	.	.	Atlas-Indel,Pindel
ANXA9	8416	hgsc.bcm.edu	hg19	1	150956826	150956826	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ANXA9	NM_003568	exon6	c.336delG	p.Q112fs	.	.	177.0	23.0	109.0	0.0	.	28	.	.	Atlas-INDEL
TRIM60	166655	hgsc.bcm.edu	hg19	4	165962511	165962511	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	TRIM60	NM_152620	exon3	c.1286delA	p.Y429fs	.	.	71.0	30.0	97.0	0.0	.	73	.	.	Atlas-Indel,Pindel
MDM1	56890	hgsc.bcm.edu	hg19	12	68715351	68715352	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	MDM1	NM_017440	exon6	c.859_860insA	p.H287fs	.	.	93.0	23.0	108.0	0.0	.	74	.	.	Atlas-Indel,Pindel
NASP	4678	hgsc.bcm.edu	hg19	1	46078848	46078855	+	Frame_Shift_Del	DEL	AGGCTCAG	AGGCTCAG	-	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	AGGCTCAG	AGGCTCAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	NASP	NM_002482	exon7	c.1433_1440del	p.478_480del	.	.	23.0	17.0	75.0	0.0	.	77	.	.	Atlas-Indel,Pindel
SIPA1	6494	hgsc.bcm.edu	hg19	11	65417088	65417111	+	In_Frame_Del	DEL	CCACCACAGCCAAGCCATCAGTAC	CCACCACAGCCAAGCCATCAGTAC	-	rs137989252	by1000genomes;alternate_allele	TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	CCACCACAGCCAAGCCATCAGTAC	CCACCACAGCCAAGCCATCAGTAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	SIPA1	NM_006747	exon11	c.2581_2604del	p.861_868del	.	.	36.0	10.0	65.0	0.0	.	45	.	.	Atlas-Indel,Pindel
ANXA9	8416	hgsc.bcm.edu	hg19	1	150956828	150956829	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-DD-AAC8-01A-11D-A40R-10	TCGA-DD-AAC8-10A-01D-A40U-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7b3c3428-4aba-4f50-ab9e-852dbd0e4141	b7eb2f91-437b-4009-bda9-315bd19c65e2	.	ANXA9	NM_003568	exon6	c.338_339del	p.113_113del	.	.	175.0	19.0	108.0	0.0	.	28	.	.	Pindel
