Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
C1orf168	199920	hgsc.bcm.edu	37	1	57206372	57206372	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	C1orf168	NM_001004303	exon13	c.A1701G	p.L567L	TTACCTTAAGTTT	.	56.0	22.0	107.0	0.0	.	102	.	.	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	37	1	103405915	103405915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	COL11A1_ENST00000370096,NS,carcinoma,0,2	COL11A1	NM_080629	exon43	c.C3388A	p.P1130T	CGGCAGGACCAGC	.	102.0	31.0	240.0	1.0	.	972	2	.	Atlas-SNP
KCNA3	3738	hgsc.bcm.edu	37	1	111216298	111216298	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	KCNA3,NS,carcinoma,-1,1	KCNA3	NM_002232	exon1	c.G1134A	p.S378S	GTGGCGCGACAGC	.	79.0	40.0	67.0	0.0	.	91	1	.	Atlas-SNP
KCND3	3752	hgsc.bcm.edu	37	1	112525100	112525100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	KCND3_ENST00000315987,NS,carcinoma,0,2	KCND3	NM_004980	exon2	c.C249A	p.F83L	GTCGAAGAAGTAC	.	97.0	37.0	96.0	0.0	.	150	2	.	Atlas-SNP
ADAM30	11085	hgsc.bcm.edu	37	1	120438632	120438632	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	ADAM30	NM_021794	exon1	c.T328G	p.C110G	AGTTGCAGTCCTT	.	71.0	42.0	128.0	0.0	.	88	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152282404	152282404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	FLG	NM_002016	exon3	c.C4958T	p.S1653L	GTGCCTGATTGTC	.	93.0	33.0	137.0	0.0	.	900	.	.	Atlas-SNP
SLAMF1	6504	hgsc.bcm.edu	37	1	160604639	160604639	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	SLAMF1,NS,carcinoma,+1,1	SLAMF1	NM_003037	exon3	c.A464C	p.N155T	GTCCCGTTCTCCT	.	93.0	37.0	119.0	0.0	.	74	1	.	Atlas-SNP
ZBTB41	360023	hgsc.bcm.edu	37	1	197157558	197157558	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	ZBTB41,NS,carcinoma,-2,1	ZBTB41	NM_194314	exon4	c.A1410G	p.K470K	AAAAGATTTCTTA	.	34.0	11.0	49.0	0.0	.	116	1	.	Atlas-SNP
NUP133	55746	hgsc.bcm.edu	37	1	229625781	229625781	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	NUP133	NM_018230	exon9	c.T1115A	p.L372Q	GTTATCAGAGAGT	.	84.0	39.0	161.0	0.0	.	111	.	.	Atlas-SNP
ZNF512	84450	hgsc.bcm.edu	37	2	27822456	27822456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	ZNF512	NM_032434	exon4	c.G284T	p.G95V	GGTCAGGTGGAGT	.	99.0	38.0	198.0	0.0	.	54	.	.	Atlas-SNP
HAAO	23498	hgsc.bcm.edu	37	2	43015676	43015676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	HAAO	NM_012205	exon2	c.G152A	p.G51D	TCTTCACCCTCTT	.	61.0	30.0	49.0	0.0	.	26	.	.	Atlas-SNP
ABCG8	64241	hgsc.bcm.edu	37	2	44102319	44102319	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	ABCG8	NM_022437	exon11	c.T1523G	p.I508S	CCTACATCATCAT	.	42.0	14.0	50.0	0.0	.	98	.	.	Atlas-SNP
C2orf81	388963	hgsc.bcm.edu	37	2	74642264	74642264	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	C2orf81,colon,carcinoma,-1,1	C2orf81	NM_001145054	exon4	c.C959G	p.S320C	TGGCAGGACGCGG	.	125.0	5.0	116.0	0.0	.	23	1	.	Atlas-SNP
AMER3	205147	hgsc.bcm.edu	37	2	131522066	131522066	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	.	NM_152698	exon2	c.C2421A	p.G807G	CCAGGGCCACCAT	.	97.0	33.0	66.0	0.0	.	.	.	.	Atlas-SNP
MFF	56947	hgsc.bcm.edu	37	2	228197291	228197291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	MFF	NM_020194	exon5	c.C416T	p.P139L	CAACCCCTCAAAA	.	140.0	57.0	256.0	0.0	.	48	.	.	Atlas-SNP
TTLL3	26140	hgsc.bcm.edu	37	3	9867563	9867563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	TTLL3	NM_001025930	exon8	c.C1234T	p.P412S	GTGGTACCCCAGA	.	318.0	158.0	351.0	1.0	.	51	.	.	Atlas-SNP
PLCL2	23228	hgsc.bcm.edu	37	3	17053189	17053189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	PLCL2	NM_015184	exon2	c.A1973G	p.Y658C	ATGTCTATGTTGA	.	92.0	42.0	132.0	0.0	.	145	.	.	Atlas-SNP
NGLY1	55768	hgsc.bcm.edu	37	3	25777623	25777623	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	NGLY1	NM_018297	exon7	c.G1021C	p.V341L	AATAGACTTCTGT	.	68.0	22.0	146.0	0.0	.	57	.	.	Atlas-SNP
EOMES	8320	hgsc.bcm.edu	37	3	27763429	27763429	+	Silent	SNP	T	T	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	EOMES	NM_005442	exon1	c.A357C	p.A119A	GGCGGCTGCAGCG	.	65.0	18.0	29.0	0.0	.	65	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	T	rs121913400	bycluster	TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	CTNNB1,gallbladder,other,0,435	CTNNB1	NM_001098209	exon3	c.C98T	p.S33F	TGGACTCTGGAAT	.	70.0	22.0	154.0	0.0	.	4904	435	.	Atlas-SNP
CDCP1	64866	hgsc.bcm.edu	37	3	45152154	45152154	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	CDCP1	NM_178181	exon4	c.G835T	p.E279X	CCCGCTCCTCCTT	.	155.0	75.0	156.0	0.0	.	61	.	.	Atlas-SNP
FEZF2	55079	hgsc.bcm.edu	37	3	62356922	62356922	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	FEZF2	NM_018008	exon4	c.G1090T	p.E364X	AAAATTCGCAGAC	.	79.0	31.0	94.0	0.0	.	46	.	.	Atlas-SNP
ADAMTS9	56999	hgsc.bcm.edu	37	3	64582563	64582563	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	ADAMTS9	NM_182920	exon27	c.G4122A	p.E1374E	TCTTTGCTCATCA	.	61.0	21.0	74.0	0.0	.	206	.	.	Atlas-SNP
FRMD4B	23150	hgsc.bcm.edu	37	3	69362608	69362608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	FRMD4B	NM_015123	exon2	c.G223T	p.V75F	CCTGAACCAGCAG	.	56.0	24.0	92.0	0.0	.	90	.	.	Atlas-SNP
PDE6B	5158	hgsc.bcm.edu	37	4	619713	619713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	PDE6B	NM_001145291	exon1	c.C298A	p.R100S	CGCCAGCGCAACG	.	87.0	47.0	68.0	0.0	.	80	.	.	Atlas-SNP
NDNF	79625	hgsc.bcm.edu	37	4	121966814	121966814	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	NDNF	NM_024574	exon2	c.C179G	p.T60R	TTAGGTGTATCTC	.	72.0	34.0	158.0	0.0	.	72	.	.	Atlas-SNP
ADCY2	108	hgsc.bcm.edu	37	5	7698485	7698485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	ADCY2	NM_020546	exon7	c.A1107G	p.I369M	AGCCATAAAGTAA	.	28.0	15.0	53.0	0.0	.	337	.	.	Atlas-SNP
C5orf22	55322	hgsc.bcm.edu	37	5	31541416	31541416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	C5orf22,NS,carcinoma,0,1	C5orf22	NM_018356	exon6	c.G899A	p.R300Q	ATACTCGAATTCA	.	48.0	24.0	104.0	0.0	.	48	1	.	Atlas-SNP
ADAMTS12	81792	hgsc.bcm.edu	37	5	33630934	33630934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	ADAMTS12	NM_030955	exon13	c.G1973T	p.C658F	TCAAAGCAAGGGG	.	142.0	54.0	273.0	0.0	.	464	.	.	Atlas-SNP
TGFBI	7045	hgsc.bcm.edu	37	5	135388596	135388596	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	TGFBI	NM_000358	exon8	c.A914G	p.D305G	CCCCAGACCTGCT	.	49.0	21.0	82.0	0.0	.	76	.	.	Atlas-SNP
PCDHA1	56147	hgsc.bcm.edu	37	5	140168107	140168107	+	Silent	SNP	G	G	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	PCDHA1_ENST00000504120,NS,carcinoma,+2,2	PCDHA1	NM_031410	exon1	c.G2232C	p.A744A	CAGCGCGTTGGGG	.	152.0	64.0	164.0	0.0	.	387	2	.	Atlas-SNP
CAMK2A	815	hgsc.bcm.edu	37	5	149602646	149602646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	CAMK2A,NS,carcinoma,+2,1	CAMK2A	NM_015981	exon18	c.G1372A	p.A458T	ACTGGGCGGTGCG	.	61.0	24.0	59.0	0.0	.	42	1	.	Atlas-SNP
RNF145	153830	hgsc.bcm.edu	37	5	158586026	158586026	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	RNF145	NM_001199380	exon11	c.G1734T	p.V578V	CGTGATCACAGCA	.	32.0	12.0	65.0	0.0	.	110	.	.	Atlas-SNP
GABRA6	2559	hgsc.bcm.edu	37	5	161115970	161115970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	GABRA6,NS,carcinoma,0,1	GABRA6	NM_000811	exon4	c.G241T	p.V81F	ATGGATGTTTTTT	.	39.0	20.0	49.0	0.0	.	139	1	.	Atlas-SNP
FOXC1	2296	hgsc.bcm.edu	37	6	1612042	1612042	+	Silent	SNP	G	G	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	FOXC1	NM_001453	exon1	c.G1362C	p.G454G	CGGCGGGGGAGGC	.	346.0	31.0	188.0	0.0	.	19	.	.	Atlas-SNP
VPS52	6293	hgsc.bcm.edu	37	6	33231576	33231576	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	VPS52	NM_022553	exon16	c.C1701G	p.N567K	GTCATAGTTGTTG	.	72.0	4.0	85.0	0.0	.	56	.	.	Atlas-SNP
USP45	85015	hgsc.bcm.edu	37	6	99883624	99883624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	USP45	NM_001080481	exon18	c.G2413A	p.A805T	GGTAGGCTTGTGC	.	22.0	8.0	62.0	0.0	.	56	.	.	Atlas-SNP
SEC63	11231	hgsc.bcm.edu	37	6	108194082	108194082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	SEC63	NM_007214	exon20	c.G2069A	p.G690E	TAATTTCCAGGCT	.	89.0	39.0	203.0	0.0	.	79	.	.	Atlas-SNP
REV3L	5980	hgsc.bcm.edu	37	6	111652972	111652972	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	REV3L	NM_002912	exon24	c.A7941G	p.K2647K	GCCAAATTTGAAC	.	42.0	16.0	115.0	0.0	.	386	.	.	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	37	6	129723605	129723605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	LAMA2	NM_000426	exon39	c.T5699C	p.L1900S	CTCAGTTGAATGA	.	26.0	16.0	68.0	0.0	.	481	.	.	Atlas-SNP
KIAA1244	57221	hgsc.bcm.edu	37	6	138483281	138483281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	KIAA1244	NM_020340	exon1	c.A58G	p.I20V	AAAGCCATCAAGG	.	220.0	85.0	144.0	0.0	.	236	.	.	Atlas-SNP
REPS1	85021	hgsc.bcm.edu	37	6	139234056	139234056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	REPS1,NS,carcinoma,0,1	REPS1	NM_031922	exon16	c.A1814G	p.D605G	TCGGCATCCACTG	.	35.0	15.0	59.0	1.0	.	58	1	.	Atlas-SNP
MTRF1L	54516	hgsc.bcm.edu	37	6	153316417	153316417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	MTRF1L	NM_019041	exon3	c.A377G	p.E126G	TCATTTTCATCTG	.	69.0	31.0	165.0	0.0	.	21	.	.	Atlas-SNP
PLG	5340	hgsc.bcm.edu	37	6	161134133	161134133	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	PLG	NM_000301	exon5	c.T523A	p.Y175N	TATGACTACTGCG	.	49.0	15.0	53.0	0.0	.	150	.	.	Atlas-SNP
CHPF2	54480	hgsc.bcm.edu	37	7	150935715	150935715	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	CHPF2	NM_019015	exon4	c.G2267C	p.R756P	GGGGCCGTGCCCA	.	95.0	23.0	69.0	0.0	.	52	.	.	Atlas-SNP
XKR6	286046	hgsc.bcm.edu	37	8	10782179	10782179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	XKR6	NM_173683	exon2	c.T926C	p.I309T	AGCATGATGTAGA	.	38.0	17.0	64.0	0.0	.	85	.	.	Atlas-SNP
PSD3	23362	hgsc.bcm.edu	37	8	18662113	18662113	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	PSD3	NM_015310	exon7	c.1830-1G>T	.	TCGTTGCTATAAG	.	46.0	22.0	101.0	0.0	.	142	.	.	Atlas-SNP
ADAM28	10863	hgsc.bcm.edu	37	8	24199212	24199212	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	ADAM28	NM_014265	exon16	c.A1772C	p.E591A	ATCCTGAAGACAC	.	106.0	53.0	199.0	0.0	.	100	.	.	Atlas-SNP
SLCO5A1	81796	hgsc.bcm.edu	37	8	70744717	70744717	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	SLCO5A1	NM_030958	exon2	c.G192T	p.V64V	AGAATCCACACAG	.	105.0	68.0	78.0	0.0	.	142	.	.	Atlas-SNP
SPAG1	6674	hgsc.bcm.edu	37	8	101206459	101206459	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	SPAG1	NM_003114	exon10	c.A1059C	p.K353N	AGGAAAAAGCGGA	.	370.0	20.0	577.0	0.0	.	80	.	.	Atlas-SNP
EFR3A	23167	hgsc.bcm.edu	37	8	132966069	132966069	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	EFR3A	NM_015137	exon6	c.C493T	p.R165X	AGGATACGAATTG	.	48.0	10.0	97.0	0.0	.	96	.	.	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	37	8	139856352	139856352	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	COL22A1	NM_152888	exon4	c.C708A	p.T236T	TCCATTGGTGTGC	.	64.0	20.0	79.0	0.0	.	390	.	.	Atlas-SNP
VCP	7415	hgsc.bcm.edu	37	9	35068306	35068306	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	VCP	NM_007126	exon2	c.A71C	p.N24T	AACCGATTGGGAC	.	59.0	25.0	73.0	0.0	.	64	.	.	Atlas-SNP
COL5A1	1289	hgsc.bcm.edu	37	9	137703411	137703411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	COL5A1	NM_000093	exon46	c.G3656A	p.G1219D	CCAGAGGCTTTCC	.	117.0	45.0	132.0	0.0	.	323	.	.	Atlas-SNP
ANAPC2	29882	hgsc.bcm.edu	37	9	140077646	140077646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	ANAPC2	NM_013366	exon6	c.C1217T	p.A406V	CGCAGCGCCTTGA	.	104.0	40.0	101.0	0.0	.	57	.	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	37	10	17113430	17113430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	CUBN	NM_001081	exon19	c.G2620A	p.V874I	CCTCAACATAATC	.	69.0	6.0	116.0	0.0	.	515	.	.	Atlas-SNP
KIAA1217	56243	hgsc.bcm.edu	37	10	24727389	24727389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	KIAA1217	NM_019590	exon5	c.C827T	p.T276I	CAAAAACTATGAA	.	69.0	27.0	104.0	0.0	.	235	.	.	Atlas-SNP
GRID1	2894	hgsc.bcm.edu	37	10	87966273	87966273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	GRID1,extremity,malignant_melanoma,0,1	GRID1	NM_017551	exon3	c.C368T	p.S123L	CGTGGCGACCCTC	.	94.0	36.0	88.0	0.0	.	204	1	.	Atlas-SNP
PDZD7	79955	hgsc.bcm.edu	37	10	102770318	102770318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	PDZD7	NM_001195263	exon15	c.C2328A	p.S776R	GCTACGGCTGCGG	.	438.0	216.0	362.0	0.0	.	101	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1093375	1093375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	MUC2	NM_002457	exon30	c.C5194T	p.P1732S	GTGACCCCAACCC	.	39.0	5.0	39.0	0.0	.	614	.	.	Atlas-SNP
MYEOV	26579	hgsc.bcm.edu	37	11	69063143	69063143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	MYEOV	NM_138768	exon3	c.T226C	p.S76P	GGCAGATCCCGGG	.	73.0	36.0	66.0	0.0	.	42	.	.	Atlas-SNP
ALG9	79796	hgsc.bcm.edu	37	11	111742145	111742145	+	Missense_Mutation	SNP	C	C	G	rs200786242		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	ALG9	NM_001077690	exon2	c.G61C	p.A21P	CCGGGGCGCGTAT	.	759.0	35.0	650.0	0.0	.	77	.	.	Atlas-SNP
APOA1	335	hgsc.bcm.edu	37	11	116706843	116706843	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	APOA1	NM_000039	exon4	c.A485C	p.Q162P	TTCTCTTGCAGCT	.	40.0	18.0	51.0	0.0	.	19	.	.	Atlas-SNP
CEP164	22897	hgsc.bcm.edu	37	11	117222658	117222658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	CEP164,caecum,carcinoma,0,1	CEP164	NM_001271933	exon4	c.A347G	p.K116R	AAAAAAAGGAAAA	.	53.0	3.0	87.0	0.0	.	121	1	.	Atlas-SNP
PLEKHG6	55200	hgsc.bcm.edu	37	12	6424240	6424240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	PLEKHG6	NM_001144856	exon4	c.C364T	p.P122S	CGGCTGCCCCCTG	.	47.0	16.0	61.0	0.0	.	62	.	.	Atlas-SNP
CLEC2D	29121	hgsc.bcm.edu	37	12	9833543	9833543	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	CLEC2D	NM_001004419	exon2	c.C86G	p.S29C	AGCATTCTATTAA	.	26.0	8.0	72.0	0.0	.	54	.	.	Atlas-SNP
TMBIM6	7009	hgsc.bcm.edu	37	12	50153095	50153095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	TMBIM6	NM_001098576	exon8	c.A779G	p.D260G	ATCAAGATTATAT	.	36.0	16.0	67.0	0.0	.	26	.	.	Atlas-SNP
INHBE	83729	hgsc.bcm.edu	37	12	57850023	57850023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	INHBE	NM_031479	exon2	c.A445G	p.R149G	CCAAGGAGGAGGC	.	69.0	31.0	102.0	0.0	.	38	.	.	Atlas-SNP
EXOC5	10640	hgsc.bcm.edu	37	14	57686092	57686092	+	Missense_Mutation	SNP	T	T	C	rs370435401		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	EXOC5,NS,carcinoma,+2,1	EXOC5	NM_006544	exon14	c.A1474G	p.I492V	GAAAAATAGTATT	.	149.0	54.0	404.0	1.0	.	45	1	.	Atlas-SNP
IFT43	112752	hgsc.bcm.edu	37	14	76488730	76488730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	IFT43	NM_001102564	exon3	c.G208T	p.A70S	GTGAAGGCTTCGA	.	60.0	43.0	192.0	0.0	.	63	.	.	Atlas-SNP
RTF1	23168	hgsc.bcm.edu	37	15	41771302	41771302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	RTF1	NM_015138	exon16	c.C1820T	p.S607F	CTCAGTCCAGAGA	.	60.0	20.0	68.0	0.0	.	76	.	.	Atlas-SNP
TYRO3	7301	hgsc.bcm.edu	37	15	41854916	41854916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	TYRO3	NM_006293	exon4	c.G580A	p.G194R	GTAACAGGTGAGC	.	45.0	19.0	55.0	0.0	.	169	.	.	Atlas-SNP
TLN2	83660	hgsc.bcm.edu	37	15	62999360	62999360	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	TLN2	NM_015059	exon17	c.C2080T	p.Q694X	GTTGCCCAAGTGG	.	64.0	21.0	92.0	0.0	.	253	.	.	Atlas-SNP
PDIA2	64714	hgsc.bcm.edu	37	16	336642	336642	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	PDIA2	NM_006849	exon9	c.T1329C	p.I443I	CATCATTGCTGAG	.	60.0	20.0	90.0	0.0	.	51	.	.	Atlas-SNP
SRL	6345	hgsc.bcm.edu	37	16	4242284	4242284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	SRL	NM_001098814	exon6	c.T1292C	p.I431T	CGCTCAATCTTCT	.	111.0	56.0	140.0	0.0	.	56	.	.	Atlas-SNP
USP7	7874	hgsc.bcm.edu	37	16	8992449	8992449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	USP7	NM_003470	exon24	c.C2579T	p.T860I	CTTAAAGTACCTT	.	33.0	14.0	62.0	0.0	.	116	.	.	Atlas-SNP
PDXDC1	23042	hgsc.bcm.edu	37	16	15069069	15069069	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	PDXDC1	NM_015027	exon1	c.C13T	p.L5L	GCGTCCCTGGAGA	.	105.0	53.0	52.0	0.0	.	59	.	.	Atlas-SNP
CDH15	1013	hgsc.bcm.edu	37	16	89260253	89260253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	CDH15	NM_004933	exon13	c.C2083T	p.R695C	CAGGGCCGCCTGC	.	86.0	42.0	100.0	0.0	.	54	.	.	Atlas-SNP
MPDU1	9526	hgsc.bcm.edu	37	17	7490856	7490856	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	MPDU1	NM_004870	exon7	c.A731C	p.K244T	AGCAGAAAAAGGC	.	35.0	28.0	65.0	0.0	.	14	.	.	Atlas-SNP
PER1	5187	hgsc.bcm.edu	37	17	8049752	8049752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	PER1	NM_002616	exon16	c.C1976T	p.T659I	GAGGAGGTGGTAT	.	26.0	14.0	48.0	0.0	.	104	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	37	17	11797765	11797765	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	DNAH9,NS,carcinoma,0,1	DNAH9	NM_001372	exon59	c.C11358A	p.T3786T	GGGCACCGCCAGC	.	15.0	11.0	47.0	0.0	.	695	1	.	Atlas-SNP
SARM1	23098	hgsc.bcm.edu	37	17	26723213	26723213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	SARM1,colon,carcinoma,-1,1	SARM1	NM_015077	exon10	c.A2080G	p.I694V	GAGAAGATCATCC	.	69.0	35.0	48.0	0.0	.	40	1	.	Atlas-SNP
SARM1	23098	hgsc.bcm.edu	37	17	26723216	26723216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	SARM1	NM_015077	exon10	c.A2083G	p.I695V	AAGATCATCCGCT	.	63.0	32.0	45.0	0.0	.	40	.	.	Atlas-SNP
KRT20	54474	hgsc.bcm.edu	37	17	39036387	39036387	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	KRT20	NM_019010	exon4	c.A757T	p.N253Y	GAAGGTTCTTCTG	.	53.0	33.0	69.0	0.0	.	38	.	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45234727	45234727	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	CDC27_ENST00000531206,NS,carcinoma,+2,10	CDC27	NM_001114091	exon6	c.A499T	p.T167S	TAAATGTTTGGTC	.	95.0	4.0	126.0	2.0	.	337	10	.	Atlas-SNP
NAT9	26151	hgsc.bcm.edu	37	17	72767893	72767893	+	Silent	SNP	A	A	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	NAT9	NM_015654	exon7	c.T594G	p.P198P	TCTGTAAGGCTTC	.	52.0	16.0	58.0	0.0	.	16	.	.	Atlas-SNP
NPLOC4	55666	hgsc.bcm.edu	37	17	79536080	79536080	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	NPLOC4	NM_017921	exon14	c.T1411G	p.F471V	TAGGAAATGGATT	.	121.0	61.0	129.0	0.0	.	27	.	.	Atlas-SNP
EPB41L3	23136	hgsc.bcm.edu	37	18	5396258	5396258	+	Missense_Mutation	SNP	G	G	C	rs79592897	bycluster;by1000genomes;alternate_allele	TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	EPB41L3	NM_012307	exon19	c.C2915G	p.T972R	TCCTTCGTGGAAA	.	42.0	16.0	104.0	0.0	.	222	.	G|0.998;A|0.002	Atlas-SNP
CBLN2	147381	hgsc.bcm.edu	37	18	70205486	70205486	+	Silent	SNP	G	G	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	CBLN2,NS,carcinoma,-1,1	CBLN2	NM_182511	exon5	c.C600G	p.L200L	AAGTTTGAGATGC	.	77.0	34.0	108.0	0.0	.	41	1	.	Atlas-SNP
CIRBP	1153	hgsc.bcm.edu	37	19	1271585	1271585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	CIRBP	NM_001280	exon5	c.G385A	p.E129K	CGGTTCGAGTCCA	.	58.0	23.0	61.0	0.0	.	19	.	.	Atlas-SNP
TMED1	11018	hgsc.bcm.edu	37	19	10945612	10945612	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	TMED1	NM_006858	exon3	c.A463C	p.K155Q	ACACCTTGATGTC	.	44.0	17.0	61.0	0.0	.	22	.	.	Atlas-SNP
TMED1	11018	hgsc.bcm.edu	37	19	10945625	10945625	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	TMED1	NM_006858	exon3	c.A450C	p.K150N	CTCCATTTTAACA	.	43.0	15.0	60.0	0.0	.	22	.	.	Atlas-SNP
SLC5A5	6528	hgsc.bcm.edu	37	19	18001706	18001706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	SLC5A5	NM_000453	exon14	c.C1663T	p.R555C	ACCAAGCGCAGCA	.	53.0	22.0	60.0	0.0	.	67	.	.	Atlas-SNP
LSR	51599	hgsc.bcm.edu	37	19	35758280	35758280	+	Silent	SNP	A	A	G	rs112715995	bycluster	TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	LSR	NM_205834	exon9	c.A1557G	p.R519R	TGGGAGAAGCCGG	.	83.0	9.0	94.0	0.0	.	60	.	.	Atlas-SNP
FFAR2	2867	hgsc.bcm.edu	37	19	35940857	35940857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	FFAR2	NM_005306	exon1	c.G241T	p.V81F	AAGGTCGTCTGCG	.	57.0	26.0	39.0	0.0	.	39	.	.	Atlas-SNP
NAPA	8775	hgsc.bcm.edu	37	19	47995285	47995285	+	Missense_Mutation	SNP	A	A	C	rs149012477	byfrequency;alternate_allele	TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	NAPA	NM_003827	exon8	c.T653G	p.M218R	TTGAGCATGTCGA	.	48.0	18.0	51.0	0.0	.	34	.	A|1.000;G|0.000	Atlas-SNP
TPRX1	284355	hgsc.bcm.edu	37	19	48305624	48305624	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	TPRX1	NM_198479	exon2	c.T644A	p.I215N	CCTGAGATTGGGC	.	71.0	31.0	12.0	0.0	.	46	.	.	Atlas-SNP
TPRX1	284355	hgsc.bcm.edu	37	19	48305638	48305638	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	TPRX1,NS,carcinoma,0,1	TPRX1	NM_198479	exon2	c.A630G	p.P210P	TGAGATTGGGCCT	.	79.0	23.0	61.0	0.0	.	46	1	.	Atlas-SNP
IZUMO1	284359	hgsc.bcm.edu	37	19	49244664	49244664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	IZUMO1	NM_182575	exon9	c.T826C	p.S276P	TGGACGACTCCGT	.	35.0	19.0	53.0	0.0	.	30	.	.	Atlas-SNP
VSIG10L	147645	hgsc.bcm.edu	37	19	51844521	51844521	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	VSIG10L	NM_001163922	exon2	c.C781A	p.R261R	CCCCCCGGGCCTG	.	73.0	31.0	44.0	0.0	.	40	.	.	Atlas-SNP
NLRP7	199713	hgsc.bcm.edu	37	19	55452329	55452329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	NLRP7	NM_001127255	exon3	c.G322A	p.A108T	CTTCTGCATCTCC	.	37.0	10.0	55.0	0.0	.	411	.	.	Atlas-SNP
DEFB129	140881	hgsc.bcm.edu	37	20	210326	210326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	DEFB129,NS,carcinoma,0,2	DEFB129	NM_080831	exon2	c.G466A	p.A156T	GATTCTGCCACTG	.	28.0	11.0	62.0	0.0	.	24	2	.	Atlas-SNP
SLC32A1	140679	hgsc.bcm.edu	37	20	37357190	37357190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	SLC32A1	NM_080552	exon2	c.A1486G	p.I496V	GTCGCCATCTTCG	.	104.0	42.0	123.0	0.0	.	81	.	.	Atlas-SNP
EWSR1	2130	hgsc.bcm.edu	37	22	29695754	29695754	+	Missense_Mutation	SNP	G	G	A	rs201365388		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	EWSR1_ENST00000414183,brain,glioma,0,2	EWSR1	NM_013986	exon17	c.G1859A	p.R620Q	GAAGACGAGGTGG	.	79.0	5.0	84.0	0.0	.	104	2	G|0.994;A|0.006	Atlas-SNP
EWSR1	2130	hgsc.bcm.edu	37	22	29695793	29695793	+	Missense_Mutation	SNP	A	A	C	rs200316952		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	EWSR1_ENST00000414183,NS,carcinoma,0,5	EWSR1	NM_013986	exon17	c.A1898C	p.Q633P	TGGAACAGATGGG	.	77.0	5.0	82.0	0.0	.	104	5	A|0.997;C|0.003	Atlas-SNP
TST	7263	hgsc.bcm.edu	37	22	37407302	37407302	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	TST	NM_003312	exon3	c.T660C	p.D220D	GAAGCCATCCTCA	.	102.0	50.0	90.0	0.0	.	22	.	.	Atlas-SNP
TRIOBP	11078	hgsc.bcm.edu	37	22	38120691	38120691	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	TRIOBP_ENST00000344404,NS,carcinoma,0,1	TRIOBP	NM_001039141	exon7	c.T2128G	p.S710A	GCCTCCTCTCCTA	.	149.0	57.0	157.0	0.0	.	262	1	.	Atlas-SNP
MICALL1	85377	hgsc.bcm.edu	37	22	38302534	38302534	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	MICALL1	NM_033386	exon1	c.G105T	p.L35L	CGGCCTGGCCTTC	.	37.0	14.0	23.0	0.0	.	53	.	.	Atlas-SNP
KAL1	3730	hgsc.bcm.edu	37	X	8553366	8553366	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	KAL1	NM_000216	exon6	c.G798A	p.V266V	CACATTCACAGCA	.	31.0	25.0	34.0	0.0	.	78	.	.	Atlas-SNP
HEPH	9843	hgsc.bcm.edu	37	X	65408259	65408259	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	HEPH	NM_138737	exon5	c.C846T	p.L282L	CTTCCTCCTCTTC	.	69.0	64.0	138.0	0.0	.	224	.	.	Atlas-SNP
MED12	9968	hgsc.bcm.edu	37	X	70349274	70349274	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	MED12	NM_005120	exon26	c.T3686A	p.V1229E	TGTTTGTACTTGG	.	44.0	36.0	43.0	0.0	.	984	.	.	Atlas-SNP
COL4A5	1287	hgsc.bcm.edu	37	X	107925029	107925029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	COL4A5	NM_000495	exon45	c.T4109C	p.I1370T	GTATCATAATTAA	.	71.0	55.0	129.0	0.0	.	262	.	.	Atlas-SNP
TENM1	10178	hgsc.bcm.edu	37	X	123514834	123514834	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	.	NM_001163278	exon32	c.A7751T	p.K2584M	CCAAGCTTAATGA	.	67.0	61.0	103.0	0.0	.	.	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	37	MT	12835	12835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	.	ENST00000361567	exon1	c.G499A	p.A167T	AACACAGCAGCCA	.	110.0	6.0	8.0	0.0	.	.	.	.	Atlas-SNP
PHTF1	10745	hgsc.bcm.edu	37	1	114249252	114249253	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	PHTF1	NM_006608	exon11	c.1362_1363insT	p.M454fs	.	.	162.0	57.0	349.0	0.0	.	69	.	.	Atlas-Indel
CDKN1B	1027	hgsc.bcm.edu	37	12	12871044	12871044	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	CDKN1B	NM_004064	exon1	c.270delA	p.R90fs	.	.	519.0	190.0	651.0	0.0	.	48	.	.	Atlas-Indel
NOX5	79400	hgsc.bcm.edu	37	15	69329420	69329432	+	Frame_Shift_Del	DEL	TTCATGGGCCCAA	TTCATGGGCCCAA	-	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	TTCATGGGCCCAA	TTCATGGGCCCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	NOX5	NM_024505	exon8	c.1240_1252del	p.414_418del	.	.	76.0	16.0	132.0	0.0	.	60	.	.	Atlas-Indel
REEP6	92840	hgsc.bcm.edu	37	19	1495318	1495341	+	In_Frame_Del	DEL	TCTGCTGTTCGGCTACGGAGCGTC	TCTGCTGTTCGGCTACGGAGCGTC	-	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	TCTGCTGTTCGGCTACGGAGCGTC	TCTGCTGTTCGGCTACGGAGCGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	REEP6	NM_138393	exon2	c.140_163del	p.47_55del	.	.	28.0	12.0	45.0	0.0	.	21	.	.	Atlas-Indel
CD40	958	hgsc.bcm.edu	37	20	44756975	44756975	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	CD40,NS,carcinoma,0,1	CD40	NM_001250	exon8	c.652delG	p.V218fs	.	.	87.0	10.0	95.0	0.0	.	33	1	.	Atlas-Indel
SUPT20HL1	100130302	hgsc.bcm.edu	37	X	24382442	24382453	+	In_Frame_Del	DEL	TAGCTGCTGCTG	TAGCTGCTGCTG	-	novel		TCGA-DD-AACA-01A-11D-A40R-10	TCGA-DD-AACA-10A-01D-A40U-10	TAGCTGCTGCTG	TAGCTGCTGCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fee6db1a-5aa7-490d-a841-3b5b430ec874	99678528-a049-4ed5-9eb9-d70563f8d53f	.	.	NM_001136234	exon1	c.1564_1575del	p.522_525del	.	.	78.0	18.0	87.0	0.0	.	.	.	.	Atlas-Indel
