Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
RPS6KA1	6195	hgsc.bcm.edu	hg19	1	26900660	26900660	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	RPS6KA1	NM_001006665	exon21	c.C2203A	p.R735R	CAGCGGCGAGTGA	.	44.0	15.0	58.0	0.0	.	65	.	.	Atlas-SNP
STIL	6491	hgsc.bcm.edu	hg19	1	47746604	47746604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	STIL	NM_003035	exon12	c.C1526T	p.P509L	TAGGCAGGTGGCT	.	119.0	50.0	123.0	0.0	.	91	.	.	Atlas-SNP
ITLN1	55600	hgsc.bcm.edu	hg19	1	160849202	160849202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	ITLN1	NM_017625	exon7	c.G688A	p.E230K	TGAATTCCCCTGA	.	100.0	32.0	82.0	0.0	.	45	.	.	Atlas-SNP
RGS5	8490	hgsc.bcm.edu	hg19	1	163117258	163117258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	RGS5	NM_001254749	exon5	c.G432T	p.M144I	GTTCTTCATTGTG	.	152.0	52.0	117.0	0.0	.	29	.	.	Atlas-SNP
PBX1	5087	hgsc.bcm.edu	hg19	1	164769105	164769105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	PBX1	NM_001204963	exon4	c.G680A	p.R227H	TCCTGCGTTCCCG	.	107.0	32.0	106.0	0.0	.	60	.	.	Atlas-SNP
TPR	7175	hgsc.bcm.edu	hg19	1	186304629	186304629	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	TPR	NM_003292	exon34	c.G4752A	p.R1584R	TCCATTCCTTTGT	.	76.0	9.0	94.0	0.0	.	441	.	.	Atlas-SNP
ASPM	259266	hgsc.bcm.edu	hg19	1	197065148	197065148	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	ASPM	NM_018136	exon19	c.T8967C	p.Y2989Y	TTTGGTATAGAAG	.	108.0	42.0	81.0	0.0	.	444	.	.	Atlas-SNP
NUAK2	81788	hgsc.bcm.edu	hg19	1	205277742	205277742	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	NUAK2	NM_030952	exon3	c.G471T	p.R157R	GATCTGCCGGAAG	.	123.0	53.0	92.0	0.0	.	107	.	.	Atlas-SNP
OR14A16	284532	hgsc.bcm.edu	hg19	1	247978833	247978833	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	OR14A16	NM_001001966	exon1	c.T199A	p.L67M	GATCCAAGAAAGA	.	287.0	45.0	205.0	0.0	.	90	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21256268	21256268	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	APOB	NM_000384	exon9	c.C1027T	p.Q343X	CTCTCTGGATATT	.	62.0	28.0	76.0	0.0	.	761	.	.	Atlas-SNP
IMP4	92856	hgsc.bcm.edu	hg19	2	131103253	131103253	+	Silent	SNP	C	C	T	rs201275845		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	IMP4	NM_033416	exon5	c.C420T	p.H140H	CGTTCACGAGCAT	.	59.0	25.0	66.0	0.0	.	35	.	C|0.999;T|0.001	Atlas-SNP
FAM168B	130074	hgsc.bcm.edu	hg19	2	131812878	131812878	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	FAM168B	NM_001009993	exon5	c.A442T	p.M148L	CCACCATGCCCAT	.	79.0	37.0	103.0	0.0	.	15	.	.	Atlas-SNP
PKP4	8502	hgsc.bcm.edu	hg19	2	159481723	159481723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	PKP4	NM_001005476	exon7	c.G937A	p.G313R	AGAGTGGGGTCCC	.	110.0	39.0	122.0	0.0	.	133	.	.	Atlas-SNP
TANC1	85461	hgsc.bcm.edu	hg19	2	160027239	160027239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	TANC1	NM_033394	exon10	c.C1274T	p.S425F	TCATTTCCAAGTT	.	256.0	127.0	234.0	1.0	.	157	.	.	Atlas-SNP
ZAK	0	hgsc.bcm.edu	hg19	2	174047653	174047653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	ZAK	NM_133646	exon4	c.A319G	p.I107V	GATCACATTATGA	.	439.0	174.0	443.0	1.0	.	62	.	.	Atlas-SNP
SCRN3	79634	hgsc.bcm.edu	hg19	2	175292518	175292518	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	SCRN3	NM_024583	exon8	c.A1170G	p.Q390Q	CCTTCAAAACAAG	.	451.0	126.0	410.0	0.0	.	76	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196619135	196619135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	DNAH7	NM_018897	exon63	c.C11690A	p.T3897K	GGAATTGTGTATT	.	144.0	43.0	153.0	0.0	.	512	.	.	Atlas-SNP
NRP2	8828	hgsc.bcm.edu	hg19	2	206562324	206562324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	NRP2	NM_201279	exon2	c.G130A	p.G44S	TCTCCCGGTTACC	.	115.0	51.0	150.0	0.0	.	179	.	.	Atlas-SNP
TRIP12	9320	hgsc.bcm.edu	hg19	2	230656743	230656743	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	TRIP12	NM_004238	exon28	c.G4029A	p.R1343R	CTGCAGCCTGTGT	.	300.0	133.0	250.0	1.0	.	207	.	.	Atlas-SNP
EPM2AIP1	9852	hgsc.bcm.edu	hg19	3	37034022	37034022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	EPM2AIP1	NM_014805	exon1	c.G547A	p.A183T	CAAAAGCCTGGTC	.	61.0	11.0	93.0	0.0	.	47	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	G	rs121913396	bycluster	TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	CTNNB1,gallbladder,other,+1,128	CTNNB1	NM_001098209	exon3	c.A95G	p.D32G	ACCTGGACTCTGG	.	138.0	35.0	165.0	1.0	.	4904	.	.	Atlas-SNP
TRAK1	22906	hgsc.bcm.edu	hg19	3	42265035	42265035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	TRAK1	NM_001042646	exon16	c.G2668T	p.V890L	GGCCTGGTACCTG	.	64.0	34.0	87.0	0.0	.	188	.	.	Atlas-SNP
FAM19A1	407738	hgsc.bcm.edu	hg19	3	68466449	68466449	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	FAM19A1	NM_213609	exon3	c.G138A	p.V46V	TGAAGTGATAGCA	.	108.0	13.0	126.0	0.0	.	58	.	.	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	hg19	3	77671422	77671422	+	Missense_Mutation	SNP	C	C	A	rs376068100	alternate_allele	TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	ROBO2_ENST00000487694,colon,carcinoma,0,4	ROBO2	NM_002942	exon23	c.C3599A	p.P1200Q	TTCCACCGTTAGG	.	149.0	77.0	124.0	1.0	.	527	.	.	Atlas-SNP
SLCO2A1	6578	hgsc.bcm.edu	hg19	3	133674014	133674014	+	Missense_Mutation	SNP	C	C	T	rs148547180		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	SLCO2A1,NS,carcinoma,0,1	SLCO2A1	NM_005630	exon4	c.G421A	p.E141K	AGAGCTCGGCCTG	.	80.0	25.0	76.0	0.0	.	72	.	C|1.000;T|0.000	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195507945	195507945	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	MUC4	NM_018406	exon2	c.C10506A	p.T3502T	AGTGCTGGTGTCA	.	216.0	38.0	244.0	0.0	.	1505	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195507946	195507946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	MUC4	NM_018406	exon2	c.C10505A	p.T3502N	GTGCTGGTGTCAC	.	213.0	36.0	243.0	0.0	.	1505	.	.	Atlas-SNP
STK32B	55351	hgsc.bcm.edu	hg19	4	5461929	5461929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	STK32B,colon,carcinoma,0,1	STK32B	NM_018401	exon9	c.G883A	p.A295T	AAGAAGGCACTGA	.	67.0	21.0	99.0	0.0	.	87	.	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	hg19	4	114208800	114208800	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	ANK2	NM_001148	exon19	c.A2119C	p.K707Q	GAAGATAAAGTGA	.	41.0	16.0	81.0	0.0	.	576	.	.	Atlas-SNP
FBXL7	23194	hgsc.bcm.edu	hg19	5	15928473	15928473	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	FBXL7	NM_012304	exon3	c.A602T	p.D201V	TCACAGACCGAGG	.	144.0	67.0	113.0	0.0	.	138	.	.	Atlas-SNP
RNF180	285671	hgsc.bcm.edu	hg19	5	63510007	63510007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	RNF180	NM_001113561	exon4	c.G854T	p.S285I	CATCCAGTTTTGA	.	102.0	22.0	108.0	0.0	.	94	.	.	Atlas-SNP
MAST4	375449	hgsc.bcm.edu	hg19	5	66398386	66398386	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	MAST4	NM_001164664	exon9	c.T1093A	p.C365S	GCCTGCTGTGACC	.	186.0	42.0	233.0	0.0	.	218	.	.	Atlas-SNP
C5orf47	133491	hgsc.bcm.edu	hg19	5	173416302	173416302	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	C5orf47	NM_001144954	exon1	c.G36A	p.S12S	GGACTCGGCGCGC	.	93.0	22.0	111.0	0.0	.	14	.	.	Atlas-SNP
CD83	9308	hgsc.bcm.edu	hg19	6	14118268	14118268	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	CD83	NM_004233	exon2	c.A125T	p.Q42L	ATCCGCAGGTTCC	.	68.0	25.0	51.0	0.0	.	23	.	.	Atlas-SNP
ZBTB12	221527	hgsc.bcm.edu	hg19	6	31868141	31868141	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	ZBTB12	NM_181842	exon2	c.G942A	p.G314G	GCTGCCCCCCGCC	.	43.0	9.0	33.0	0.0	.	25	.	.	Atlas-SNP
GRM4	2914	hgsc.bcm.edu	hg19	6	34004308	34004308	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	GRM4	NM_000841	exon9	c.G1579C	p.G527R	GCTCACCCGGTTG	.	71.0	17.0	61.0	0.0	.	317	.	.	Atlas-SNP
TRERF1	55809	hgsc.bcm.edu	hg19	6	42196221	42196221	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	TRERF1	NM_033502	exon18	c.C3465T	p.P1155P	CTTGATGGGTTTG	.	100.0	30.0	65.0	0.0	.	124	.	.	Atlas-SNP
TNRC18	84629	hgsc.bcm.edu	hg19	7	5427597	5427597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	TNRC18	NM_001080495	exon5	c.A1858G	p.K620E	CGGGTTTCATGGT	.	105.0	28.0	140.0	0.0	.	311	.	.	Atlas-SNP
ANK1	286	hgsc.bcm.edu	hg19	8	41542087	41542087	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	ANK1	NM_001142446	exon38	c.C4635T	p.Y1545Y	CAGCGAGTAGTCG	.	73.0	48.0	46.0	0.0	.	497	.	.	Atlas-SNP
XKR9	389668	hgsc.bcm.edu	hg19	8	71646299	71646299	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	XKR9	NM_001011720	exon5	c.T762A	p.C254X	GTTTTGTACTTGT	.	228.0	20.0	107.0	0.0	.	43	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113317133	113317133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	CSMD3	NM_198123	exon52	c.C8083A	p.P2695T	TGCTTGGACATGT	.	188.0	25.0	124.0	0.0	.	2325	.	.	Atlas-SNP
DMRT1	1761	hgsc.bcm.edu	hg19	9	842074	842074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	DMRT1	NM_021951	exon1	c.G236A	p.C79Y	CACGCTGCAGGAA	.	83.0	42.0	69.0	0.0	.	38	.	.	Atlas-SNP
ELAVL2	1993	hgsc.bcm.edu	hg19	9	23762193	23762193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	ELAVL2	NM_001171195	exon2	c.A40G	p.T14A	TGGCTGTGTTATT	.	137.0	45.0	143.0	0.0	.	80	.	.	Atlas-SNP
HINT2	84681	hgsc.bcm.edu	hg19	9	35813496	35813496	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	HINT2	NM_032593	exon3	c.C273A	p.V91V	AGGAATGACCAGG	.	83.0	24.0	104.0	0.0	.	15	.	.	Atlas-SNP
TRPM3	80036	hgsc.bcm.edu	hg19	9	73151320	73151320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	TRPM3	NM_001007471	exon25	c.C4673T	p.A1558V	TGAGGGGCATTGA	.	88.0	56.0	113.0	0.0	.	700	.	.	Atlas-SNP
AGPAT2	10555	hgsc.bcm.edu	hg19	9	139568320	139568320	+	Missense_Mutation	SNP	C	C	A	rs11545228	bycluster	TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	AGPAT2	NM_006412	exon6	c.G721T	p.V241F	CAGGGACGTCCGC	.	83.0	54.0	127.0	0.0	.	17	.	C|1.000	Atlas-SNP
ADARB2	105	hgsc.bcm.edu	hg19	10	1405325	1405325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	ADARB2	NM_018702	exon3	c.G975T	p.K325N	GGCCAGCTTCTTG	.	29.0	11.0	25.0	0.0	.	95	.	.	Atlas-SNP
PFKFB3	5209	hgsc.bcm.edu	hg19	10	6262815	6262815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	PFKFB3	NM_004566	exon8	c.G818A	p.S273N	TGTCCAGCCGGGG	.	50.0	8.0	44.0	0.0	.	82	.	.	Atlas-SNP
PSAP	5660	hgsc.bcm.edu	hg19	10	73594188	73594188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	PSAP	NM_001042466	exon2	c.G115A	p.A39T	CGGACGCCGTCTT	.	89.0	36.0	65.0	0.0	.	43	.	.	Atlas-SNP
PDZD7	79955	hgsc.bcm.edu	hg19	10	102770594	102770594	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	PDZD7	NM_001195263	exon15	c.A2052T	p.E684D	TTCCTCTTCCGGG	.	550.0	216.0	461.0	0.0	.	101	.	.	Atlas-SNP
RPLP2	6181	hgsc.bcm.edu	hg19	11	812569	812569	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	RPLP2	NM_001004	exon4	c.G207T	p.G69G	TGGTGGGGCTGTA	.	32.0	10.0	43.0	0.0	.	2	.	.	Atlas-SNP
FOLH1	2346	hgsc.bcm.edu	hg19	11	49214430	49214430	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	FOLH1	NM_004476	exon4	c.T428C	p.L143S	TCAAATAATGATG	.	143.0	24.0	191.0	0.0	.	141	.	.	Atlas-SNP
TNKS1BP1	85456	hgsc.bcm.edu	hg19	11	57080662	57080662	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	TNKS1BP1	NM_033396	exon5	c.C1500T	p.I500I	TTCAGTGATGGGG	.	52.0	10.0	73.0	0.0	.	148	.	.	Atlas-SNP
MS4A6E	245802	hgsc.bcm.edu	hg19	11	60107405	60107405	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	MS4A6E	NM_139249	exon3	c.C421T	p.L141L	GCTGTGCTGCAGT	.	35.0	17.0	63.0	0.0	.	22	.	.	Atlas-SNP
TEX40	25858	hgsc.bcm.edu	hg19	11	64070996	64070996	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	.	NM_001039496	exon3	c.T395A	p.M132K	AGCACATGCCCCA	.	56.0	20.0	68.0	0.0	.	.	.	.	Atlas-SNP
CNTN5	53942	hgsc.bcm.edu	hg19	11	100211261	100211261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	CNTN5	NM_001243270	exon21	c.T2797C	p.S933P	AATGAGTCTTTCG	.	141.0	43.0	171.0	0.0	.	324	.	.	Atlas-SNP
KBTBD3	143879	hgsc.bcm.edu	hg19	11	105923599	105923599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	KBTBD3	NM_152433	exon3	c.G1817T	p.W606L	GAAAACCATGGGT	.	122.0	31.0	134.0	0.0	.	59	.	.	Atlas-SNP
KBTBD3	143879	hgsc.bcm.edu	hg19	11	105923600	105923600	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	KBTBD3	NM_152433	exon3	c.T1816A	p.W606R	AAAACCATGGGTC	.	123.0	31.0	134.0	0.0	.	59	.	.	Atlas-SNP
MLL	4297	hgsc.bcm.edu	hg19	11	118374231	118374231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	MLL	NM_001197104	exon27	c.C7624A	p.L2542M	AATGCCCTGAAAG	.	73.0	24.0	111.0	0.0	.	548	.	.	Atlas-SNP
TAS2R42	353164	hgsc.bcm.edu	hg19	12	11339508	11339508	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	TAS2R42	NM_181429	exon1	c.G36A	p.L12L	TATTGCCAGAATC	.	76.0	20.0	62.0	0.0	.	30	.	.	Atlas-SNP
SP1	6667	hgsc.bcm.edu	hg19	12	53775951	53775951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	SP1	NM_138473	exon3	c.C220T	p.P74S	GAGTCACCCAATG	.	54.0	10.0	57.0	0.0	.	57	.	.	Atlas-SNP
HSP90B1	7184	hgsc.bcm.edu	hg19	12	104327962	104327962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	HSP90B1	NM_003299	exon5	c.A640G	p.K214E	ACTTCAAAACACA	.	229.0	21.0	238.0	0.0	.	72	.	.	Atlas-SNP
ATP12A	479	hgsc.bcm.edu	hg19	13	25283923	25283923	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	ATP12A	NM_001185085	exon19	c.A2738T	p.K913M	GGGAGAAGGACTA	.	94.0	20.0	84.0	0.0	.	172	.	.	Atlas-SNP
VWA8	23078	hgsc.bcm.edu	hg19	13	42385467	42385467	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	.	NM_015058	exon17	c.T1957C	p.L653L	CCGCTAATGATTG	.	94.0	11.0	116.0	0.0	.	.	.	.	Atlas-SNP
ING1	3621	hgsc.bcm.edu	hg19	13	111371917	111371917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	ING1	NM_005537	exon2	c.G907A	p.E303K	AACCGTGAGAACG	.	289.0	69.0	239.0	0.0	.	106	.	.	Atlas-SNP
CUL4A	8451	hgsc.bcm.edu	hg19	13	113882334	113882334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	CUL4A	NM_001008895	exon4	c.G413T	p.C138F	ACACGTGCTGGCA	.	110.0	40.0	116.0	0.0	.	50	.	.	Atlas-SNP
JKAMP	51528	hgsc.bcm.edu	hg19	14	59953512	59953512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	JKAMP_ENST00000356057,NS,carcinoma,0,2	JKAMP	NM_016475	exon2	c.G86A	p.G29E	TATATGGAGAATG	.	96.0	17.0	85.0	0.0	.	49	.	.	Atlas-SNP
FLRT2	23768	hgsc.bcm.edu	hg19	14	86089391	86089391	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	FLRT2	NM_013231	exon2	c.G1533A	p.E511E	TTCAGAGGCCACC	.	153.0	40.0	150.0	0.0	.	168	.	.	Atlas-SNP
TMC3	342125	hgsc.bcm.edu	hg19	15	81625501	81625501	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	TMC3	NM_001080532	exon22	c.T2562A	p.P854P	GAAAAGAGGTTCT	.	115.0	14.0	135.0	0.0	.	112	.	.	Atlas-SNP
ZSCAN2	54993	hgsc.bcm.edu	hg19	15	85164886	85164886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	ZSCAN2	NM_181877	exon3	c.C1460A	p.S487Y	GGAGCTCCAACCT	.	78.0	10.0	65.0	0.0	.	43	.	.	Atlas-SNP
CENPT	80152	hgsc.bcm.edu	hg19	16	67862725	67862725	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	CENPT	NM_025082	exon14	c.G1302A	p.E434E	CAGAGGCTCTGCA	.	69.0	17.0	62.0	0.0	.	26	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577095	7577095	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	TP53_ENST00000455263,NS,adenocarcinoma,-1,1	TP53	NM_000546	exon8	c.C843G	p.D281E	GCGCCGGTCTCTC	.	64.0	40.0	89.0	0.0	.	33396	.	.	Atlas-SNP
RPL19	6143	hgsc.bcm.edu	hg19	17	37357506	37357506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	RPL19	NM_000981	exon2	c.C46T	p.R16C	GTCCTCCGCTGTG	.	66.0	11.0	50.0	0.0	.	18	.	.	Atlas-SNP
ABCC3	8714	hgsc.bcm.edu	hg19	17	48746279	48746279	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	ABCC3	NM_003786	exon15	c.A1936C	p.S646R	CTGCACAGGTACC	.	86.0	37.0	76.0	0.0	.	138	.	.	Atlas-SNP
EXOC7	23265	hgsc.bcm.edu	hg19	17	74093950	74093950	+	Missense_Mutation	SNP	C	C	A	rs117225564	bycluster;by1000genomes;alternate_allele	TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	EXOC7	NM_001145298	exon5	c.G567T	p.E189D	CAGGTGCTCCAGG	.	144.0	63.0	124.0	0.0	.	47	.	C|0.999;T|0.001	Atlas-SNP
RALBP1	10928	hgsc.bcm.edu	hg19	18	9535711	9535711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	RALBP1	NM_006788	exon10	c.G1744A	p.E582K	GAGCGCGAGGCCA	.	87.0	22.0	103.0	0.0	.	48	.	.	Atlas-SNP
SPIRE1	56907	hgsc.bcm.edu	hg19	18	12464951	12464951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	SPIRE1	NM_001128626	exon11	c.A1411G	p.T471A	GCAGCGTTTCTTC	.	43.0	20.0	38.0	0.0	.	120	.	.	Atlas-SNP
FAM210A	125228	hgsc.bcm.edu	hg19	18	13681644	13681644	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	.	NM_001098801	exon3	c.T433A	p.S145T	CACCAGAAGTTAT	.	162.0	48.0	189.0	0.0	.	.	.	.	Atlas-SNP
TPGS1	91978	hgsc.bcm.edu	hg19	19	519039	519039	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	.	NM_033513	exon2	c.G489A	p.P163P	GGCGCCGCTGCTG	.	49.0	21.0	62.0	0.0	.	.	.	.	Atlas-SNP
LPPR3	0	hgsc.bcm.edu	hg19	19	815228	815228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	.	NM_001270366	exon4	c.T361C	p.C121R	AGTTGCAGCCGCC	.	56.0	39.0	57.0	0.0	.	.	.	.	Atlas-SNP
GTF2F1	2962	hgsc.bcm.edu	hg19	19	6387475	6387475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	GTF2F1	NM_002096	exon5	c.A422G	p.H141R	CAGTTGTGCACGG	.	91.0	62.0	95.0	0.0	.	39	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9089258	9089258	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	MUC16	NM_024690	exon1	c.T2557A	p.S853T	GAGTAGATGAAGA	.	95.0	66.0	100.0	0.0	.	4315	.	.	Atlas-SNP
ZNF726	730087	hgsc.bcm.edu	hg19	19	24115522	24115522	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	.	NM_001244038	exon4	c.A604T	p.K202X	TCCTACAAATGTA	.	70.0	30.0	70.0	0.0	.	.	.	.	Atlas-SNP
LILRA2	11027	hgsc.bcm.edu	hg19	19	55086934	55086934	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	LILRA2	NM_001130917	exon5	c.C867T	p.H289H	CTCCCACGGGGGC	.	141.0	42.0	160.0	0.0	.	99	.	.	Atlas-SNP
RPN2	6185	hgsc.bcm.edu	hg19	20	35812641	35812641	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	RPN2	NM_002951	exon2	c.G72T	p.T24T	TCTGACGCCCACT	.	145.0	25.0	137.0	0.0	.	45	.	.	Atlas-SNP
EMILIN3	90187	hgsc.bcm.edu	hg19	20	39992390	39992390	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	EMILIN3,caecum,carcinoma,0,1	EMILIN3	NM_052846	exon3	c.G402T	p.T134T	ATGGTCCGTGAGG	.	125.0	22.0	121.0	0.0	.	63	.	.	Atlas-SNP
PTPRT	11122	hgsc.bcm.edu	hg19	20	40827954	40827954	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	PTPRT	NM_133170	exon17	c.A2474T	p.K825I	GTGGGTTTGTCGG	.	128.0	16.0	136.0	0.0	.	372	.	.	Atlas-SNP
NCOA5	57727	hgsc.bcm.edu	hg19	20	44692024	44692024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	NCOA5	NM_020967	exon7	c.G1125A	p.M375I	GCTCCTCATCAGC	.	43.0	26.0	35.0	0.0	.	58	.	.	Atlas-SNP
SYCP2	10388	hgsc.bcm.edu	hg19	20	58489238	58489238	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	SYCP2	NM_014258	exon10	c.C703T	p.L235L	GTGCCAGTTCTTG	.	160.0	11.0	133.0	0.0	.	204	.	.	Atlas-SNP
SRMS	6725	hgsc.bcm.edu	hg19	20	62172284	62172284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	SRMS	NM_080823	exon8	c.C1354T	p.P452S	CCGCCGGGCAGGC	.	47.0	7.0	45.0	0.0	.	48	.	.	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	hg19	21	41416170	41416170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	DSCAM	NM_001271534	exon31	c.C5218T	p.P1740S	CTGTGGGCCCAGC	.	68.0	5.0	53.0	0.0	.	347	.	.	Atlas-SNP
LIF	3976	hgsc.bcm.edu	hg19	22	30640879	30640879	+	Silent	SNP	C	C	T	rs368278663		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	LIF	NM_002309	exon2	c.G63A	p.A21A	GCTCCCCGCCCCA	.	127.0	6.0	125.0	0.0	.	18	.	.	Atlas-SNP
NAP1L3	4675	hgsc.bcm.edu	hg19	X	92927344	92927344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	NAP1L3	NM_004538	exon1	c.G960T	p.K320N	AACATTCTTTAAA	.	117.0	37.0	212.0	0.0	.	81	.	.	Atlas-SNP
ACACA	31	hgsc.bcm.edu	hg19	17	35486338	35486338	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	ACACA	NM_198834	exon47	c.5898delG	p.K1966fs	.	.	128.0	46.0	143.0	0.0	.	395	.	.	Atlas-INDEL
PGLYRP2	114770	hgsc.bcm.edu	hg19	19	15586526	15586526	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	PGLYRP2	NM_052890	exon2	c.956delG	p.R319fs	.	.	64.0	17.0	78.0	0.0	.	116	.	.	Atlas-INDEL
MLL	4297	hgsc.bcm.edu	hg19	11	118374237	118374238	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	MLL	NM_001197104	exon27	c.7630_7631insTC	p.E2544fs	.	.	73.0	24.0	105.0	0.0	.	548	.	.	Atlas-INDEL
PLCL2	23228	hgsc.bcm.edu	hg19	3	17051428	17051429	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	PLCL2,NS,carcinoma,0,2	PLCL2	NM_015184	exon2	c.212_213insA	p.G71fs	.	.	172.0	38.0	185.0	0.0	.	145	.	.	Atlas-INDEL
CHGB	1114	hgsc.bcm.edu	hg19	20	5903753	5903754	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	CHGB	NM_001819	exon4	c.963_964insG	p.L321fs	.	.	186.0	33.0	145.0	0.0	.	112	.	.	Atlas-INDEL
FASN	2194	hgsc.bcm.edu	hg19	17	80050789	80050793	+	Frame_Shift_Del	DEL	ATCTG	ATCTG	-	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	ATCTG	ATCTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	FASN	NM_004104	exon6	c.759_763del	p.253_255del	.	.	93.0	37.0	91.0	0.0	.	154	.	.	Atlas-INDEL
ST3GAL2	6483	hgsc.bcm.edu	hg19	16	70432255	70432255	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	ST3GAL2	NM_006927	exon2	c.180delC	p.L60fs	.	.	80.0	19.0	79.0	0.0	.	23	.	.	Atlas-INDEL
SSU72	29101	hgsc.bcm.edu	hg19	1	1500211	1500211	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	SSU72	NM_014188	exon2	c.167delA	p.D56fs	.	.	103.0	40.0	110.0	0.0	.	15	.	.	Atlas-INDEL
NAP1L5	266812	hgsc.bcm.edu	hg19	4	89618757	89618768	+	In_Frame_Del	DEL	TGACCAGCCGCG	TGACCAGCCGCG	-	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	TGACCAGCCGCG	TGACCAGCCGCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	NAP1L5	NM_153757	exon1	c.139_150del	p.47_50del	.	.	38.0	29.0	63.0	0.0	.	23	.	.	Atlas-INDEL
USP54	159195	hgsc.bcm.edu	hg19	10	75296083	75296083	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	USP54	NM_152586	exon9	c.1089delT	p.P363fs	.	.	107.0	19.0	113.0	0.0	.	178	.	.	Atlas-INDEL
KEAP1	9817	hgsc.bcm.edu	hg19	19	10610330	10610330	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AACB-01A-11D-A40R-10	TCGA-DD-AACB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c89647e-854d-47b7-bf48-df5f8112ba84	035d1a22-9937-469e-a65c-1e9eb89fc338	.	KEAP1	NM_012289	exon2	c.381delT	p.G127fs	.	.	69.0	50.0	76.0	0.0	.	182	.	.	Atlas-INDEL
