Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
AGL	178	hgsc.bcm.edu	hg19	1	100366399	100366399	+	Silent	SNP	T	T	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	AGL	NM_000644	exon26	c.T3570G	p.P1190P	TGCTCCTTTGCCT	.	120.0	19.0	125.0	0.0	.	137	.	.	Atlas-SNP
SPAG17	200162	hgsc.bcm.edu	hg19	1	118574431	118574431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	SPAG17	NM_206996	exon25	c.G3493T	p.V1165L	GAACCACTGTTGG	.	152.0	30.0	159.0	0.0	.	263	.	.	Atlas-SNP
ANP32E	81611	hgsc.bcm.edu	hg19	1	150204152	150204152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	ANP32E	NM_030920	exon2	c.C167T	p.S56L	GCCAGCGAACTTA	.	101.0	9.0	64.0	0.0	.	28	.	.	Atlas-SNP
TROVE2	6738	hgsc.bcm.edu	hg19	1	193045776	193045776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	TROVE2	NM_004600	exon4	c.A947G	p.K316R	TAAAAAAGGTAAG	.	298.0	44.0	219.0	0.0	.	50	.	.	Atlas-SNP
SIPA1L2	57568	hgsc.bcm.edu	hg19	1	232649711	232649711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	SIPA1L2	NM_020808	exon1	c.G1375A	p.E459K	GCACTTCCAAGAC	.	119.0	39.0	99.0	0.0	.	218	.	.	Atlas-SNP
PCBP1	5093	hgsc.bcm.edu	hg19	2	70315623	70315623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	PCBP1	NM_006196	exon1	c.A748G	p.M250V	TTTGCCATGATGC	.	140.0	23.0	139.0	0.0	.	28	.	.	Atlas-SNP
SLC39A10	57181	hgsc.bcm.edu	hg19	2	196593046	196593046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	SLC39A10	NM_020342	exon9	c.G2310A	p.M770I	AGGCATGTTCCTC	.	149.0	27.0	131.0	0.0	.	89	.	.	Atlas-SNP
PTH2R	5746	hgsc.bcm.edu	hg19	2	209345847	209345847	+	Missense_Mutation	SNP	G	G	T	rs151296979	bycluster	TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	PTH2R,NS,carcinoma,0,2	PTH2R	NM_005048	exon10	c.G1034T	p.W345L	AAATCTGGGAGAC	.	259.0	21.0	218.0	0.0	.	92	.	G|1.000;T|0.000	Atlas-SNP
GRM7	2917	hgsc.bcm.edu	hg19	3	7620315	7620315	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	GRM7	NM_000844	exon8	c.C1722T	p.T574T	TCGAACCGGATGC	.	109.0	12.0	110.0	0.0	.	223	.	.	Atlas-SNP
SH3BP5	9467	hgsc.bcm.edu	hg19	3	15300545	15300545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	SH3BP5	NM_004844	exon7	c.A682G	p.T228A	CCACAGTCTTTTT	.	89.0	7.0	85.0	0.0	.	32	.	.	Atlas-SNP
NR1D2	9975	hgsc.bcm.edu	hg19	3	24009404	24009404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.,2	NR1D2	NM_005126	exon7	c.G1433T	p.G478V	CAATGGGAGCAGG	.	108.0	23.0	105.0	0.0	.	52	.	.	Atlas-SNP
SLC4A7	9497	hgsc.bcm.edu	hg19	3	27490188	27490188	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	SLC4A7	NM_001258379	exon3	c.A231C	p.K77N	TTTATCTTTTCTT	.	98.0	12.0	133.0	0.0	.	119	.	.	Atlas-SNP
CADPS	8618	hgsc.bcm.edu	hg19	3	62860303	62860303	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	CADPS	NM_003716	exon1	c.T402G	p.N134K	CTTGGCATTAAAG	.	92.0	13.0	92.0	0.0	.	387	.	.	Atlas-SNP
DZIP3	9666	hgsc.bcm.edu	hg19	3	108373111	108373111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	DZIP3	NM_014648	exon19	c.A2153G	p.K718R	AAGACAAGTTCTA	.	120.0	21.0	148.0	0.0	.	111	.	.	Atlas-SNP
POLQ	10721	hgsc.bcm.edu	hg19	3	121209009	121209009	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	POLQ	NM_199420	exon16	c.T2769A	p.F923L	GGATATAAATGTG	.	116.0	21.0	138.0	0.0	.	273	.	.	Atlas-SNP
ITGB5	3693	hgsc.bcm.edu	hg19	3	124592378	124592378	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	ITGB5	NM_002213	exon2	c.G71C	p.G24A	TTGAGACCTTTAA	.	102.0	18.0	109.0	0.0	.	66	.	.	Atlas-SNP
COL6A6	131873	hgsc.bcm.edu	hg19	3	130346161	130346161	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	COL6A6	NM_001102608	exon25	c.4942-2A>C	.	GTTTACAGGGCAA	.	182.0	32.0	160.0	0.0	.	497	.	.	Atlas-SNP
ACTL6A	86	hgsc.bcm.edu	hg19	3	179304415	179304415	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	ACTL6A	NM_004301	exon13	c.T1204C	p.S402P	CTAGCCTCTTTGG	.	51.0	10.0	44.0	0.0	.	43	.	.	Atlas-SNP
ACTL6A	86	hgsc.bcm.edu	hg19	3	179304422	179304422	+	Splice_Site	SNP	T	T	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	ACTL6A	NM_178042	exon13	c.1083+2T>G	.	CTTTGGTTAGTAG	.	50.0	11.0	41.0	0.0	.	43	.	.	Atlas-SNP
MAP3K13	9175	hgsc.bcm.edu	hg19	3	185146704	185146704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	MAP3K13	NM_004721	exon2	c.G335T	p.G112V	CAAGCGGAACTGA	.	186.0	24.0	153.0	0.0	.	209	.	.	Atlas-SNP
BCL6	604	hgsc.bcm.edu	hg19	3	187446200	187446200	+	Silent	SNP	C	C	T	rs370060611		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	BCL6	NM_001134738	exon5	c.G1488A	p.T496T	AGGGAACGTGGGG	.	101.0	19.0	98.0	0.0	.	107	.	.	Atlas-SNP
C1QTNF7	114905	hgsc.bcm.edu	hg19	4	15443998	15443998	+	Missense_Mutation	SNP	G	G	A	rs372857232		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	C1QTNF7	NM_001135170	exon3	c.G466A	p.A156T	AAATCCGCCTTTT	.	240.0	46.0	210.0	0.0	.	36	.	.	Atlas-SNP
GABRG1	2565	hgsc.bcm.edu	hg19	4	46060363	46060363	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	GABRG1	NM_173536	exon7	c.T787C	p.F263L	CAAAAAAAATTGT	.	352.0	55.0	383.0	0.0	.	172	.	.	Atlas-SNP
FGA	2243	hgsc.bcm.edu	hg19	4	155507643	155507643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	FGA	NM_000508	exon5	c.C938T	p.S313F	GTCCCAGAGCTCC	.	103.0	11.0	168.0	0.0	.	179	.	.	Atlas-SNP
TARS	6897	hgsc.bcm.edu	hg19	5	33455170	33455170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	TARS	NM_001258438	exon6	c.G673T	p.G225W	GAAGAAGGGTAAG	.	68.0	9.0	82.0	0.0	.	66	.	.	Atlas-SNP
FYB	2533	hgsc.bcm.edu	hg19	5	39135012	39135012	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	FYB	NM_001243093	exon8	c.C1650A	p.I550I	GATGCGGATGATT	.	138.0	18.0	129.0	0.0	.	354	.	.	Atlas-SNP
MEGF10	84466	hgsc.bcm.edu	hg19	5	126758426	126758426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	MEGF10	NM_032446	exon14	c.C1655T	p.P552L	GCCACCCTACCAC	.	223.0	47.0	181.0	0.0	.	152	.	.	Atlas-SNP
SLC12A2	6558	hgsc.bcm.edu	hg19	5	127483379	127483379	+	Silent	SNP	T	T	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	SLC12A2	NM_001046	exon11	c.T1839G	p.S613S	TCTTTCTTCAGCA	.	156.0	47.0	111.0	0.0	.	119	.	.	Atlas-SNP
HSPA9	3313	hgsc.bcm.edu	hg19	5	137897301	137897301	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	HSPA9	NM_004134	exon10	c.A1150C	p.I384L	CAAGAATCACTTC	.	125.0	32.0	104.0	0.0	.	49	.	.	Atlas-SNP
CPEB4	80315	hgsc.bcm.edu	hg19	5	173382953	173382953	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	CPEB4	NM_030627	exon10	c.A2003T	p.D668V	TGTGTGATGAATG	.	93.0	24.0	90.0	0.0	.	54	.	.	Atlas-SNP
HIST1H1T	3010	hgsc.bcm.edu	hg19	6	26108149	26108149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	HIST1H1T	NM_005323	exon1	c.G173A	p.R58Q	CCTACTCGTTCCT	.	114.0	7.0	105.0	0.0	.	40	.	.	Atlas-SNP
VPS52	6293	hgsc.bcm.edu	hg19	6	33231842	33231842	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	VPS52	NM_022553	exon15	c.C1563T	p.V521V	GATACTGACAAGA	.	97.0	12.0	72.0	0.0	.	56	.	.	Atlas-SNP
ZNF318	24149	hgsc.bcm.edu	hg19	6	43309850	43309850	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	ZNF318	NM_014345	exon8	c.G3376C	p.G1126R	ACATACCTTTTGC	.	77.0	17.0	70.0	0.0	.	175	.	.	Atlas-SNP
MAP3K7	6885	hgsc.bcm.edu	hg19	6	91281491	91281491	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	MAP3K7	NM_145333	exon2	c.A156T	p.K52N	CTTAGCTTTGCAA	.	95.0	17.0	81.0	0.0	.	100	.	.	Atlas-SNP
UST	10090	hgsc.bcm.edu	hg19	6	149340294	149340294	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	UST	NM_005715	exon6	c.T701A	p.L234H	GTATTCTTGAAAA	.	58.0	13.0	70.0	0.0	.	42	.	.	Atlas-SNP
AKAP12	9590	hgsc.bcm.edu	hg19	6	151673861	151673861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	AKAP12	NM_005100	exon4	c.G4335T	p.E1445D	GTTGGAGCCTGCA	.	106.0	5.0	113.0	0.0	.	170	.	.	Atlas-SNP
DAGLB	221955	hgsc.bcm.edu	hg19	7	6476018	6476018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	DAGLB	NM_139179	exon3	c.G394A	p.G132S	TGATGCCGTTTAC	.	180.0	25.0	158.0	0.0	.	74	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48626793	48626793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	ABCA13_ENST00000435803,rectum,carcinoma,+1,2	ABCA13	NM_152701	exon57	c.C14549T	p.A4850V	CCCACGCGGACAA	.	64.0	6.0	65.0	0.0	.	1192	.	.	Atlas-SNP
TAC1	6863	hgsc.bcm.edu	hg19	7	97363076	97363076	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	TAC1	NM_003182	exon3	c.C165A	p.I55I	GAGAATCGCCCGG	.	142.0	25.0	121.0	0.0	.	21	.	.	Atlas-SNP
ASNS	440	hgsc.bcm.edu	hg19	7	97482512	97482512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	ASNS	NM_133436	exon12	c.C1336T	p.H446Y	GGAGATGTTTTTC	.	74.0	14.0	91.0	0.0	.	97	.	.	Atlas-SNP
TRRAP	8295	hgsc.bcm.edu	hg19	7	98529221	98529221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	TRRAP	NM_001244580	exon26	c.A3785G	p.H1262R	CCATGCATTCGCT	.	160.0	22.0	150.0	0.0	.	863	.	.	Atlas-SNP
PLXNA4	91584	hgsc.bcm.edu	hg19	7	131895838	131895838	+	Missense_Mutation	SNP	G	G	A	rs377154325		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	PLXNA4_ENST00000359827,right_upper_lobe,carcinoma,0,2	PLXNA4	NM_020911	exon10	c.C2162T	p.T721M	TTCAGCGTGATAG	.	61.0	6.0	60.0	0.0	.	873	.	.	Atlas-SNP
GPR124	25960	hgsc.bcm.edu	hg19	8	37697733	37697733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	GPR124	NM_032777	exon17	c.C2606A	p.P869H	GGGCACCCCCTCC	.	39.0	6.0	35.0	0.0	.	85	.	.	Atlas-SNP
KIAA0146	23514	hgsc.bcm.edu	hg19	8	48647955	48647955	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	KIAA0146	NM_001080394	exon20	c.C2691T	p.C897C	CAGCTGCATTGGA	.	172.0	26.0	158.0	0.0	.	64	.	.	Atlas-SNP
GDAP1	54332	hgsc.bcm.edu	hg19	8	75274140	75274140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	GDAP1	NM_018972	exon4	c.C506T	p.S169F	CAGAGTCTGAGCT	.	101.0	10.0	93.0	0.0	.	36	.	.	Atlas-SNP
MATN2	4147	hgsc.bcm.edu	hg19	8	98900398	98900398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	MATN2	NM_002380	exon2	c.A70G	p.R24G	GAGGCCAGGGAGC	.	37.0	8.0	45.0	0.0	.	165	.	.	Atlas-SNP
C9orf96	169436	hgsc.bcm.edu	hg19	9	136245946	136245946	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	C9orf96	NM_153710	exon2	c.C127T	p.L43L	GTGAACCTGGTGG	.	124.0	26.0	113.0	0.0	.	77	.	.	Atlas-SNP
CDK1	983	hgsc.bcm.edu	hg19	10	62551796	62551796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	CDK1	NM_001786	exon6	c.T638C	p.L213P	ATCAACTCTTCAG	.	176.0	14.0	156.0	0.0	.	24	.	.	Atlas-SNP
HERC4	26091	hgsc.bcm.edu	hg19	10	69748547	69748547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	HERC4	NM_022079	exon15	c.T1679C	p.V560A	AGTTCTACTATCT	.	363.0	52.0	332.0	0.0	.	78	.	.	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	hg19	10	73563052	73563052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	CDH23	NM_022124	exon53	c.G7747T	p.A2583S	GTGGTGGCCACAG	.	83.0	9.0	82.0	0.0	.	365	.	.	Atlas-SNP
CCDC147	159686	hgsc.bcm.edu	hg19	10	106128252	106128252	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	CCDC147	NM_001008723	exon6	c.T864G	p.N288K	AGAGAATGAACAG	.	141.0	18.0	99.0	0.0	.	137	.	.	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	hg19	10	123970808	123970808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	TACC2	NM_206862	exon9	c.G6868T	p.G2290C	AAGATAGGCAAAA	.	222.0	32.0	199.0	0.0	.	271	.	.	Atlas-SNP
CDHR5	53841	hgsc.bcm.edu	hg19	11	618860	618860	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	CDHR5	NM_021924	exon13	c.A1699G	p.S567G	CCCCACTGGGTGT	.	166.0	8.0	116.0	0.0	.	77	.	.	Atlas-SNP
RSF1	51773	hgsc.bcm.edu	hg19	11	77409660	77409660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	RSF1,NS,carcinoma,0,1	RSF1	NM_016578	exon7	c.G2587A	p.E863K	ACCCTTCACTTTC	.	127.0	22.0	127.0	0.0	.	105	.	.	Atlas-SNP
BCL9L	283149	hgsc.bcm.edu	hg19	11	118771950	118771950	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	BCL9L	NM_182557	exon6	c.G2502A	p.K834K	CAGCATCTTCTGC	.	55.0	14.0	47.0	0.0	.	254	.	.	Atlas-SNP
ARHGEF12	23365	hgsc.bcm.edu	hg19	11	120318992	120318992	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	ARHGEF12	NM_015313	exon20	c.A1672C	p.K558Q	GGAGTAAAAGTGA	.	108.0	19.0	91.0	0.0	.	133	.	.	Atlas-SNP
SNX19	399979	hgsc.bcm.edu	hg19	11	130785826	130785826	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	SNX19	NM_014758	exon1	c.A9G	p.T3T	TGTTTCTGTCTTC	.	56.0	12.0	65.0	0.0	.	84	.	.	Atlas-SNP
NOP2	4839	hgsc.bcm.edu	hg19	12	6669440	6669440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	NOP2	NM_001258309	exon16	c.G1712T	p.R571L	ACCAGTCGCACAT	.	83.0	14.0	83.0	0.0	.	44	.	.	Atlas-SNP
GRIN2B	2904	hgsc.bcm.edu	hg19	12	13906726	13906726	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	GRIN2B	NM_000834	exon3	c.T535A	p.Y179N	CCTGGTAGCCAGG	.	166.0	10.0	183.0	0.0	.	303	.	.	Atlas-SNP
KRT71	112802	hgsc.bcm.edu	hg19	12	52940080	52940080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	KRT71	NM_033448	exon7	c.G1315A	p.E439K	ACTCCTCGCTCTC	.	86.0	4.0	90.0	0.0	.	70	.	.	Atlas-SNP
CAND1	55832	hgsc.bcm.edu	hg19	12	67691629	67691629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	CAND1	NM_018448	exon6	c.A850G	p.R284G	TTTGTAAGAAGGT	.	65.0	10.0	64.0	0.0	.	100	.	.	Atlas-SNP
ACACB	32	hgsc.bcm.edu	hg19	12	109692117	109692117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	ACACB	NM_001093	exon43	c.G6144T	p.M2048I	GTGGATGCTTGCA	.	137.0	31.0	105.0	0.0	.	330	.	.	Atlas-SNP
B3GNT4	79369	hgsc.bcm.edu	hg19	12	122691390	122691390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	B3GNT4	NM_030765	exon3	c.C592A	p.L198M	AAGGAGCTGCACC	.	52.0	7.0	55.0	0.0	.	35	.	.	Atlas-SNP
MGAT2	4247	hgsc.bcm.edu	hg19	14	50089289	50089289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	MGAT2	NM_002408	exon1	c.A1303G	p.R435G	GATATTAGGGACC	.	70.0	7.0	82.0	0.0	.	26	.	.	Atlas-SNP
DDHD1	80821	hgsc.bcm.edu	hg19	14	53540535	53540535	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	DDHD1	NM_001160147	exon6	c.A1341G	p.E447E	ATGCCTTTCTTCT	.	175.0	22.0	163.0	0.0	.	202	.	.	Atlas-SNP
VSX2	338917	hgsc.bcm.edu	hg19	14	74726418	74726418	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	VSX2	NM_182894	exon4	c.C693A	p.P231P	CATCCCCCTGCCC	.	132.0	25.0	93.0	0.0	.	32	.	.	Atlas-SNP
TJP1	7082	hgsc.bcm.edu	hg19	15	29997825	29997825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	TJP1	NM_003257	exon26	c.C4975T	p.P1659S	CTTGAGGGATAAT	.	141.0	23.0	140.0	0.0	.	140	.	.	Atlas-SNP
JMJD7-PLA2G4B	8681	hgsc.bcm.edu	hg19	15	42127787	42127787	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	JMJD7-PLA2G4B	NM_005090	exon4	c.A474G	p.G158G	TGCAGGAAAGATG	.	120.0	8.0	99.0	0.0	.	90	.	.	Atlas-SNP
LCTL	197021	hgsc.bcm.edu	hg19	15	66857654	66857654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	LCTL	NM_207338	exon1	c.C50T	p.P17L	AGCCTGGGCACCA	.	242.0	45.0	242.0	0.0	.	73	.	.	Atlas-SNP
IREB2	3658	hgsc.bcm.edu	hg19	15	78758781	78758781	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	IREB2	NM_004136	exon5	c.G579A	p.Q193Q	TTCGCAGATTGAG	.	150.0	15.0	140.0	0.0	.	106	.	.	Atlas-SNP
MESP1	55897	hgsc.bcm.edu	hg19	15	90294296	90294296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	MESP1	NM_018670	exon1	c.C167T	p.A56V	GGCCGCGCGGGGC	.	13.0	5.0	5.0	0.0	.	7	.	.	Atlas-SNP
MVP	9961	hgsc.bcm.edu	hg19	16	29848234	29848234	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	MVP	NM_017458	exon7	c.C864T	p.V288V	CCCTGTCGGACCG	.	112.0	23.0	102.0	0.0	.	80	.	.	Atlas-SNP
KIFC3	3801	hgsc.bcm.edu	hg19	16	57796115	57796115	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	KIFC3	NM_001130100	exon13	c.A1685C	p.K562T	GACGCCTTCTCCT	.	32.0	8.0	33.0	0.0	.	55	.	.	Atlas-SNP
CNOT1	23019	hgsc.bcm.edu	hg19	16	58572172	58572172	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	CNOT1	NM_016284	exon38	c.5136-2A>G	.	GGCACCTAGAAAA	.	97.0	10.0	86.0	0.0	.	359	.	.	Atlas-SNP
CDH8	1006	hgsc.bcm.edu	hg19	16	61687819	61687819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	CDH8	NM_001796	exon12	c.A2093G	p.K698R	ATATCCTTACGGG	.	150.0	22.0	127.0	0.0	.	273	.	.	Atlas-SNP
OVCA2	124641	hgsc.bcm.edu	hg19	17	1945365	1945365	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	.	NM_080822	exon1	c.G24T	p.R8R	CCTGCGGGTCCTG	.	38.0	8.0	44.0	0.0	.	.	.	.	Atlas-SNP
TXNDC17	84817	hgsc.bcm.edu	hg19	17	6545140	6545140	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	TXNDC17	NM_032731	exon2	c.A213G	p.V71V	CCAAGTAGGAGAA	.	90.0	4.0	102.0	0.0	.	10	.	.	Atlas-SNP
TTC19	54902	hgsc.bcm.edu	hg19	17	15903433	15903433	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	TTC19	NM_017775	exon2	c.G186T	p.A62A	CGCAGCGCTCGCC	.	532.0	93.0	614.0	1.0	.	10	.	.	Atlas-SNP
MEOX1	4222	hgsc.bcm.edu	hg19	17	41738603	41738603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	MEOX1	NM_004527	exon1	c.C300A	p.D100E	CCGGGCGTCTGAG	.	103.0	14.0	101.0	0.0	.	29	.	.	Atlas-SNP
KCNH6	81033	hgsc.bcm.edu	hg19	17	61623214	61623214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	KCNH6	NM_030779	exon14	c.T2936C	p.F979S	TGGACTTCCAGAG	.	50.0	4.0	60.0	0.0	.	122	.	.	Atlas-SNP
TSHZ1	10194	hgsc.bcm.edu	hg19	18	72998511	72998511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	TSHZ1	NM_005786	exon2	c.G1014T	p.Q338H	GGATCAGAAAGCA	.	126.0	7.0	107.0	0.0	.	104	.	.	Atlas-SNP
CACTIN	58509	hgsc.bcm.edu	hg19	19	3623843	3623843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	.	NM_021231	exon2	c.C485T	p.T162M	TCGGGCGTCTCGA	.	40.0	7.0	42.0	0.0	.	.	.	.	Atlas-SNP
FSD1	79187	hgsc.bcm.edu	hg19	19	4310529	4310529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	FSD1	NM_024333	exon6	c.G426A	p.M142I	CAACATGAGTCAC	.	98.0	7.0	85.0	0.0	.	51	.	.	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	hg19	19	22155400	22155400	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	ZNF208	NM_007153	exon4	c.A2436C	p.K812N	AAAGGTTTTGCCA	.	76.0	9.0	77.0	0.0	.	817	.	.	Atlas-SNP
FFAR1	2864	hgsc.bcm.edu	hg19	19	35842806	35842806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	FFAR1,caecum,carcinoma,-2,1	FFAR1	NM_005303	exon1	c.C352T	p.R118W	GCCTTCCGGAGGC	.	77.0	18.0	76.0	0.0	.	33	.	.	Atlas-SNP
ZNF350	59348	hgsc.bcm.edu	hg19	19	52472325	52472325	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	ZNF350	NM_021632	exon3	c.G75T	p.L25L	AGCGCCCAGGAGT	.	147.0	27.0	124.0	0.0	.	48	.	.	Atlas-SNP
ZNF185	7739	hgsc.bcm.edu	hg19	X	152128322	152128322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	ZNF185	NM_001178106	exon18	c.G1582T	p.G528C	CCAAGAGGTGGCC	.	142.0	42.0	131.0	0.0	.	92	.	.	Atlas-SNP
C1orf173	127254	hgsc.bcm.edu	hg19	1	75072555	75072556	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	C1orf173,NS,carcinoma,+2,1	C1orf173	NM_001002912	exon10	c.1219_1220insA	p.P407fs	.	.	79.0	12.0	78.0	0.0	.	380	.	.	Atlas-INDEL
IRX1	79192	hgsc.bcm.edu	hg19	5	3599554	3599556	+	In_Frame_Del	DEL	CAT	CAT	-	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	CAT	CAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	IRX1,NS,carcinoma,0,1	IRX1	NM_024337	exon2	c.491_493del	p.164_165del	.	.	139.0	12.0	131.0	0.0	.	106	.	.	Atlas-INDEL
ADAMTS2	9509	hgsc.bcm.edu	hg19	5	178772259	178772260	+	In_Frame_Ins	INS	-	-	GCA	rs372468383		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	ADAMTS2	NM_014244	exon1	c.71_72insTGC	p.P24delinsLP	.	.	14.0	10.0	2.0	1.0	.	190	.	.	Atlas-INDEL
KLF15	28999	hgsc.bcm.edu	hg19	3	126071187	126071235	+	Frame_Shift_Del	DEL	GGAACAGCGCTCTCTCCCGCTGGACCCAGGATGGAGGTGGCTCTTGTGT	GGAACAGCGCTCTCTCCCGCTGGACCCAGGATGGAGGTGGCTCTTGTGT	-	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	GGAACAGCGCTCTCTCCCGCTGGACCCAGGATGGAGGTGGCTCTTGTGT	GGAACAGCGCTCTCTCCCGCTGGACCCAGGATGGAGGTGGCTCTTGTGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	KLF15	NM_014079	exon2	c.532_580del	p.178_194del	.	.	120.0	11.0	125.0	0.0	.	40	.	.	Atlas-INDEL
DSPP	1834	hgsc.bcm.edu	hg19	4	88535860	88535861	+	In_Frame_Ins	INS	-	-	AGCAGCAGTAGCAGTGAC	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	DSPP	NM_014208	exon5	c.2046_2047insAGCAGCAGTAGCAGTGAC	p.D682delinsDSSSSSD	.	.	202.0	27.0	218.0	0.0	.	174	.	.	Atlas-INDEL
MSH6	2956	hgsc.bcm.edu	hg19	2	48010529	48010544	+	Frame_Shift_Del	DEL	GCTGGGCCTGGGCCCA	GCTGGGCCTGGGCCCA	-	novel		TCGA-DD-AACC-01A-11D-A40R-10	TCGA-DD-AACC-10A-01D-A40U-10	GCTGGGCCTGGGCCCA	GCTGGGCCTGGGCCCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b2bc7ba7-16b9-4c71-9492-c0e1b05f9fec	145154db-d25e-4815-923c-613aace5297a	.	MSH6	NM_000179	exon1	c.156_171del	p.52_57del	.	.	86.0	14.0	74.0	0.0	.	341	.	.	Atlas-INDEL
