Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
COL16A1	1307	hgsc.bcm.edu	hg19	1	32131184	32131184	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	COL16A1	NM_001856	exon55	c.G3492A	p.P1164P	ACTCACCGGTGGG	.	65.0	21.0	66.0	0.0	.	137	.	.	Atlas-SNP
ERMAP	114625	hgsc.bcm.edu	hg19	1	43296622	43296622	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	ERMAP	NM_001017922	exon4	c.T269A	p.L90Q	AAGATCTGATGCC	.	137.0	74.0	166.0	0.0	.	30	.	.	Atlas-SNP
NRAS	4893	hgsc.bcm.edu	hg19	1	115256600	115256600	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	NRAS	NM_002524	exon4	c.112-1G>A	.	AGAATCCTGGGGG	.	60.0	38.0	63.0	0.0	.	3766	.	.	Atlas-SNP
NBPF10	100132406	hgsc.bcm.edu	hg19	1	145367777	145367777	+	Missense_Mutation	SNP	G	G	T	rs200743139	bycluster	TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	NBPF10,NS,carcinoma,0,1	NBPF10	NM_001039703	exon83	c.G10373T	p.R3458M	GAAGAAGGGGAAG	.	7.0	5.0	3.0	0.0	.	221	.	.	Atlas-SNP
TCHHL1	126637	hgsc.bcm.edu	hg19	1	152057498	152057498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	TCHHL1	NM_001008536	exon3	c.A2660G	p.H887R	TGAGGGTGACCTT	.	209.0	71.0	104.0	0.0	.	132	.	.	Atlas-SNP
INTS3	65123	hgsc.bcm.edu	hg19	1	153745721	153745721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	INTS3	NM_023015	exon30	c.C3104T	p.S1035F	GGTCCTCTGCAGT	.	189.0	146.0	93.0	0.0	.	83	.	.	Atlas-SNP
F5	2153	hgsc.bcm.edu	hg19	1	169555596	169555596	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	F5	NM_000130	exon1	c.T29G	p.V10G	ACCAGGACCCAGA	.	86.0	57.0	50.0	0.0	.	301	.	.	Atlas-SNP
SMG7	9887	hgsc.bcm.edu	hg19	1	183510238	183510238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	SMG7	NM_201569	exon13	c.G1415A	p.R472K	AGCCAAGGTAAGT	.	518.0	75.0	343.0	0.0	.	165	.	.	Atlas-SNP
INTS7	25896	hgsc.bcm.edu	hg19	1	212118308	212118308	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	INTS7	NM_015434	exon19	c.G2419C	p.A807P	ACAGAGCAAGCTG	.	123.0	5.0	69.0	0.0	.	68	.	.	Atlas-SNP
AGT	183	hgsc.bcm.edu	hg19	1	230838957	230838957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	AGT	NM_000029	exon5	c.C1388T	p.A463V	TACACAGCAAACA	.	264.0	105.0	153.0	0.0	.	62	.	.	Atlas-SNP
EDARADD	128178	hgsc.bcm.edu	hg19	1	236590697	236590697	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	EDARADD	NM_145861	exon4	c.G166C	p.E56Q	GCTGAAGAATGTG	.	417.0	65.0	263.0	0.0	.	31	.	.	Atlas-SNP
ODC1	4953	hgsc.bcm.edu	hg19	2	10580969	10580969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	ODC1	NM_002539	exon12	c.C1267T	p.P423S	AGTCGGGGTTCTG	.	82.0	39.0	129.0	0.0	.	40	.	.	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32774378	32774378	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	BIRC6	NM_016252	exon65	c.12976-2A>G	.	ATTTTTAGGTTCT	.	269.0	105.0	413.0	0.0	.	838	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613065	73613065	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	ALMS1	NM_015120	exon1	c.G69A	p.E23E	GGAGGAGGAGGAA	.	444.0	30.0	551.0	0.0	.	384	.	.	Atlas-SNP
HK2	3099	hgsc.bcm.edu	hg19	2	75113492	75113492	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	HK2	NM_000189	exon14	c.C2007T	p.D669D	TGAAGACCCTCAC	.	71.0	25.0	102.0	0.0	.	85	.	.	Atlas-SNP
KIF5C	3800	hgsc.bcm.edu	hg19	2	149803415	149803415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	KIF5C	NM_004522	exon8	c.A592G	p.M198V	TCAGACATGAATG	.	152.0	64.0	202.0	0.0	.	166	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179500897	179500897	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	TTN	NM_001267550	exon226	c.A41401T	p.S13801C	CGCAGCTCAAGTA	.	73.0	29.0	108.0	0.0	.	18412	.	.	Atlas-SNP
ZDBF2	57683	hgsc.bcm.edu	hg19	2	207174808	207174808	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	ZDBF2	NM_020923	exon5	c.A5556G	p.E1852E	TAGGGAAGGTCGT	.	107.0	43.0	164.0	0.0	.	531	.	.	Atlas-SNP
COL4A3	1285	hgsc.bcm.edu	hg19	2	228141109	228141109	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	COL4A3	NM_000091	exon27	c.G1936T	p.G646X	CCTAGGGGAGAGC	.	81.0	28.0	105.0	0.0	.	293	.	.	Atlas-SNP
CELSR3	1951	hgsc.bcm.edu	hg19	3	48698559	48698559	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	CELSR3	NM_001407	exon1	c.C1509T	p.R503R	GTGCTCGCGGTCC	.	131.0	33.0	129.0	0.0	.	237	.	.	Atlas-SNP
ITIH3	3699	hgsc.bcm.edu	hg19	3	52834993	52834993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	ITIH3	NM_002217	exon11	c.C1214A	p.P405H	GCAGACCCGAAAA	.	162.0	30.0	158.0	0.0	.	132	.	.	Atlas-SNP
CNTN3	5067	hgsc.bcm.edu	hg19	3	74334612	74334612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	CNTN3	NM_020872	exon19	c.G2548A	p.E850K	ATGATTCCTCCTT	.	130.0	72.0	149.0	0.0	.	174	.	.	Atlas-SNP
OR5H14	403273	hgsc.bcm.edu	hg19	3	97868504	97868504	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	OR5H14	NM_001005514	exon1	c.T275A	p.I92K	AGATGATATCTCT	.	199.0	53.0	188.0	0.0	.	56	.	.	Atlas-SNP
A4GNT	51146	hgsc.bcm.edu	hg19	3	137849889	137849889	+	Silent	SNP	G	G	A	rs374392631	alternate_allele	TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	A4GNT	NM_016161	exon2	c.C210T	p.S70S	CTCTACGGAACAG	.	227.0	112.0	247.0	0.0	.	42	.	.	Atlas-SNP
FAM53A	152877	hgsc.bcm.edu	hg19	4	1657010	1657010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	FAM53A	NM_001013622	exon4	c.G577T	p.G193C	CGAAGCCGCCGCT	.	41.0	15.0	73.0	0.0	.	25	.	.	Atlas-SNP
CLNK	116449	hgsc.bcm.edu	hg19	4	10567642	10567642	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	CLNK	NM_052964	exon6	c.G283C	p.E95Q	CATATTCAGATTC	.	51.0	22.0	78.0	0.0	.	85	.	.	Atlas-SNP
LPHN3	23284	hgsc.bcm.edu	hg19	4	62897286	62897286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	LPHN3	NM_015236	exon20	c.G3345T	p.Q1115H	TCTACAGGGAATG	.	83.0	28.0	128.0	0.0	.	800	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79360143	79360143	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	FRAS1	NM_001166133	exon40	c.T5454C	p.D1818D	TCTGGATAATCAG	.	52.0	24.0	72.0	0.0	.	779	.	.	Atlas-SNP
LRIT3	345193	hgsc.bcm.edu	hg19	4	110772751	110772751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	LRIT3	NM_198506	exon2	c.C208T	p.R70C	GTCATCCGCAGAA	.	89.0	36.0	104.0	0.0	.	107	.	.	Atlas-SNP
LARP1B	55132	hgsc.bcm.edu	hg19	4	129028555	129028555	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	LARP1B	NM_032239	exon9	c.T1075G	p.X359E	TTTATTTAGATTT	.	67.0	25.0	107.0	0.0	.	120	.	.	Atlas-SNP
TMEM144	55314	hgsc.bcm.edu	hg19	4	159162713	159162713	+	Silent	SNP	A	A	C	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	TMEM144	NM_018342	exon11	c.A855C	p.A285A	CATAGCAAATCAC	.	43.0	10.0	57.0	0.0	.	34	.	.	Atlas-SNP
HCN1	348980	hgsc.bcm.edu	hg19	5	45267245	45267245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	HCN1	NM_021072	exon7	c.C1729A	p.P577T	TCATTGGATATTC	.	149.0	44.0	127.0	0.0	.	298	.	.	Atlas-SNP
HCN1	348980	hgsc.bcm.edu	hg19	5	45645564	45645564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	HCN1	NM_021072	exon2	c.T572C	p.I191T	TTCATGATCAGGT	.	110.0	34.0	98.0	0.0	.	298	.	.	Atlas-SNP
PIK3R1	5295	hgsc.bcm.edu	hg19	5	67576424	67576424	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	PIK3R1	NM_181523	exon6	c.C703T	p.Q235X	CCTCATCAGTATT	.	162.0	90.0	175.0	0.0	.	869	.	.	Atlas-SNP
PCDHGC3	5098	hgsc.bcm.edu	hg19	5	140857013	140857013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	PCDHGC3_ENST00000308177,colon,NS,0,2	PCDHGC3	NM_032402	exon1	c.C1330T	p.R444C	ATAGTGCGTGTTC	.	128.0	77.0	150.0	0.0	.	173	.	.	Atlas-SNP
TCOF1	6949	hgsc.bcm.edu	hg19	5	149758589	149758589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	TCOF1	NM_001135243	exon15	c.A2462G	p.Q821R	CCAAGCAGAGGTC	.	147.0	84.0	197.0	0.0	.	154	.	.	Atlas-SNP
FOXC1	2296	hgsc.bcm.edu	hg19	6	1612042	1612042	+	Silent	SNP	G	G	C	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	FOXC1	NM_001453	exon1	c.G1362C	p.G454G	CGGCGGGGGAGGC	.	483.0	31.0	269.0	0.0	.	19	.	.	Atlas-SNP
TREM1	54210	hgsc.bcm.edu	hg19	6	41250225	41250225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	TREM1	NM_001242590	exon2	c.T314C	p.V105A	TCTTCCACTTGAA	.	171.0	17.0	82.0	0.0	.	38	.	.	Atlas-SNP
TOMM6	100188893	hgsc.bcm.edu	hg19	6	41757064	41757064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	TOMM6	NM_001134493	exon2	c.T223C	p.X75Q	GGGGTGTAGCCAA	.	133.0	19.0	72.0	0.0	.	12	.	.	Atlas-SNP
RUNX2	860	hgsc.bcm.edu	hg19	6	45390469	45390469	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	RUNX2	NM_001024630	exon3	c.G198A	p.Q66Q	GCAACAGCAGCAG	.	149.0	7.0	66.0	0.0	.	128	.	.	Atlas-SNP
SLC22A2	6582	hgsc.bcm.edu	hg19	6	160677694	160677694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	SLC22A2	NM_003058	exon2	c.A470G	p.N157S	CCTACATTCACTG	.	129.0	38.0	134.0	0.0	.	78	.	.	Atlas-SNP
MYO1G	64005	hgsc.bcm.edu	hg19	7	45005789	45005789	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	MYO1G	NM_033054	exon16	c.G2040T	p.L680L	CCCCTGCAGCCCG	.	56.0	19.0	31.0	0.0	.	86	.	.	Atlas-SNP
PON3	5446	hgsc.bcm.edu	hg19	7	94996796	94996796	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	PON3	NM_000940	exon5	c.T372A	p.N124K	CACAGTATTGTCT	.	140.0	55.0	82.0	0.0	.	59	.	.	Atlas-SNP
FBXO24	26261	hgsc.bcm.edu	hg19	7	100187289	100187289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	FBXO24_ENST00000427939,NS,carcinoma,0,3	FBXO24	NM_012172	exon1	c.G26A	p.R9Q	AGGAACGGGGGGG	.	217.0	20.0	199.0	0.0	.	125	.	.	Atlas-SNP
EPHB4	2050	hgsc.bcm.edu	hg19	7	100420008	100420008	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	EPHB4	NM_004444	exon4	c.T693A	p.P231P	GGGGCCAGGGGCG	.	149.0	61.0	108.0	0.0	.	106	.	.	Atlas-SNP
LHFPL3	375612	hgsc.bcm.edu	hg19	7	103969251	103969251	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	LHFPL3,NS,carcinoma,0,1	LHFPL3	NM_199000	exon1	c.C24T	p.A8A	CGCTGCCGCCGCC	.	50.0	2.0	38.0	0.0	.	24	.	.	Atlas-SNP
GCC1	79571	hgsc.bcm.edu	hg19	7	127225186	127225186	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	GCC1	NM_024523	exon1	c.G51A	p.L17L	CTCCAGCAAGTCC	.	101.0	50.0	64.0	0.0	.	83	.	.	Atlas-SNP
ZNF282	8427	hgsc.bcm.edu	hg19	7	148895528	148895528	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	ZNF282	NM_003575	exon2	c.A269T	p.Q90L	AGCCCCAGTTGCC	.	134.0	69.0	91.0	0.0	.	42	.	.	Atlas-SNP
EXTL3	2137	hgsc.bcm.edu	hg19	8	28573960	28573960	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	EXTL3	NM_001440	exon3	c.G384T	p.L128L	GGACCTGCTCCAG	.	60.0	15.0	66.0	0.0	.	83	.	.	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	hg19	8	69046429	69046429	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	PREX2	NM_024870	exon32	c.G3902C	p.W1301S	AAACTTGGGAAGC	.	108.0	38.0	108.0	0.0	.	614	.	.	Atlas-SNP
ZNF696	79943	hgsc.bcm.edu	hg19	8	144375190	144375190	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	ZNF696	NM_030895	exon2	c.C19G	p.P7A	GGAGAGCCCACAG	.	127.0	46.0	118.0	0.0	.	18	.	.	Atlas-SNP
MAMDC2	256691	hgsc.bcm.edu	hg19	9	72723289	72723289	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	MAMDC2	NM_153267	exon3	c.T311A	p.M104K	TCTACATGAGATT	.	89.0	34.0	113.0	0.0	.	55	.	.	Atlas-SNP
PROSER2	254427	hgsc.bcm.edu	hg19	10	11912120	11912120	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	.	NM_153256	exon4	c.G1023A	p.L341L	GGCGCTGGCCAAC	.	26.0	7.0	10.0	0.0	.	.	.	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	17169878	17169878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	CUBN	NM_001081	exon3	c.A298G	p.I100V	GACCAATTGCACT	.	82.0	47.0	83.0	0.0	.	515	.	.	Atlas-SNP
HK1	3098	hgsc.bcm.edu	hg19	10	71158366	71158366	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	HK1	NM_033498	exon20	c.G2403A	p.L801L	AGCACTGCTCCAG	.	54.0	16.0	48.0	0.0	.	170	.	.	Atlas-SNP
ECHS1	1892	hgsc.bcm.edu	hg19	10	135180466	135180466	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	ECHS1	NM_004092	exon5	c.T546A	p.A182A	CCCAACAGCACGG	.	44.0	15.0	58.0	0.0	.	31	.	.	Atlas-SNP
DRD2	1813	hgsc.bcm.edu	hg19	11	113281524	113281524	+	Missense_Mutation	SNP	G	G	T	rs79932566	bycluster;alternate_allele	TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	DRD2	NM_000795	exon8	c.C1257A	p.S419R	CACGGCGCTGTTG	.	129.0	47.0	104.0	0.0	.	98	.	G|1.000;A|0.000	Atlas-SNP
SLC4A8	9498	hgsc.bcm.edu	hg19	12	51857460	51857460	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	SLC4A8	NM_001039960	exon11	c.T1311A	p.H437Q	ACCACATGGGGGT	.	85.0	37.0	148.0	0.0	.	292	.	.	Atlas-SNP
SLC26A10	65012	hgsc.bcm.edu	hg19	12	58019464	58019464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	SLC26A10	NM_133489	exon14	c.G1628T	p.G543V	CCCTGGGGAGCCT	.	40.0	16.0	37.0	0.0	.	89	.	.	Atlas-SNP
PITPNM2	57605	hgsc.bcm.edu	hg19	12	123475098	123475098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	PITPNM2	NM_020845	exon16	c.G2563A	p.A855T	TCTGGGCGATGCT	.	25.0	9.0	42.0	0.0	.	105	.	.	Atlas-SNP
COL4A1	1282	hgsc.bcm.edu	hg19	13	110822980	110822980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	COL4A1	NM_001845	exon42	c.G3656T	p.G1219V	GGCTGTCCCTGGG	.	187.0	47.0	85.0	0.0	.	372	.	.	Atlas-SNP
FOXG1	2290	hgsc.bcm.edu	hg19	14	29237416	29237416	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	FOXG1	NM_005249	exon1	c.T931A	p.S311T	CCCATGTCGCCCT	.	50.0	10.0	89.0	0.0	.	92	.	.	Atlas-SNP
NID2	22795	hgsc.bcm.edu	hg19	14	52520493	52520493	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	NID2	NM_007361	exon5	c.A1233G	p.P411P	CGGTGGTGGGGTT	.	104.0	35.0	152.0	0.0	.	201	.	.	Atlas-SNP
UNC79	57578	hgsc.bcm.edu	hg19	14	94173074	94173074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	UNC79	NM_020818	exon50	c.C7201T	p.R2401C	CAGCTTCGCCTCC	.	93.0	35.0	124.0	0.0	.	366	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105415678	105415678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	AHNAK2	NM_138420	exon7	c.G6110A	p.S2037N	TGAATGCTGAGGT	.	128.0	37.0	135.0	0.0	.	719	.	.	Atlas-SNP
CHRNA7	1139	hgsc.bcm.edu	hg19	15	32323130	32323130	+	Missense_Mutation	SNP	C	C	A	rs199819119	alternate_allele	TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	CHRNA7	NM_001190455	exon2	c.C172A	p.L58I	AGGAAGCTTTACA	.	83.0	53.0	76.0	0.0	.	57	.	.	Atlas-SNP
TICRR	90381	hgsc.bcm.edu	hg19	15	90145127	90145127	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	.	NM_152259	exon12	c.A2487G	p.S829S	TTTGTCAAGTGCT	.	100.0	32.0	102.0	0.0	.	.	.	.	Atlas-SNP
ABCC12	94160	hgsc.bcm.edu	hg19	16	48173219	48173219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	ABCC12	NM_033226	exon5	c.A686G	p.Y229C	AAAGAATAGCTAT	.	172.0	46.0	165.0	0.0	.	190	.	.	Atlas-SNP
PHF23	79142	hgsc.bcm.edu	hg19	17	7139048	7139048	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	PHF23	NM_024297	exon5	c.T1109G	p.I370S	TTCTTAATCTTAG	.	30.0	17.0	57.0	0.0	.	38	.	.	Atlas-SNP
KLHL10	317719	hgsc.bcm.edu	hg19	17	39998197	39998197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	KLHL10	NM_152467	exon2	c.C317T	p.P106L	TCACACCGGACAA	.	235.0	52.0	187.0	0.0	.	67	.	.	Atlas-SNP
DHX8	1659	hgsc.bcm.edu	hg19	17	41585264	41585264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	DHX8	NM_004941	exon15	c.C2197A	p.P733T	GAAGCTCCCATTT	.	171.0	107.0	108.0	0.0	.	98	.	.	Atlas-SNP
EFTUD2	9343	hgsc.bcm.edu	hg19	17	42956967	42956967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	EFTUD2	NM_004247	exon9	c.G659A	p.R220H	GAGATGCGCAAGC	.	110.0	70.0	116.0	0.0	.	85	.	.	Atlas-SNP
OSBPL7	114881	hgsc.bcm.edu	hg19	17	45886525	45886525	+	Missense_Mutation	SNP	C	C	A	rs376859496	alternate_allele	TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	OSBPL7,NS,carcinoma,0,1	OSBPL7	NM_145798	exon20	c.G2087T	p.R696L	AGGACACGGCCAC	.	88.0	54.0	74.0	0.0	.	65	.	.	Atlas-SNP
RSAD1	55316	hgsc.bcm.edu	hg19	17	48559662	48559662	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	RSAD1	NM_018346	exon4	c.T685G	p.S229A	CAGCTGTCCCTGG	.	140.0	81.0	119.0	0.0	.	36	.	.	Atlas-SNP
ABCA9	10350	hgsc.bcm.edu	hg19	17	66978770	66978770	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	ABCA9	NM_080283	exon37	c.G4653A	p.L1551L	GACCATCAGGGAG	.	119.0	30.0	109.0	0.0	.	192	.	.	Atlas-SNP
EVPL	2125	hgsc.bcm.edu	hg19	17	74015086	74015086	+	Missense_Mutation	SNP	C	C	T	rs201678162	bycluster	TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	EVPL	NM_001988	exon11	c.G1193A	p.R398Q	CGGCTTCGCCGCT	.	121.0	45.0	108.0	0.0	.	155	.	.	Atlas-SNP
FZR1	51343	hgsc.bcm.edu	hg19	19	3531769	3531769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	FZR1	NM_001136198	exon8	c.G778A	p.A260T	GCAGCCGCAGGGA	.	126.0	8.0	152.0	0.0	.	42	.	.	Atlas-SNP
CHAF1A	10036	hgsc.bcm.edu	hg19	19	4422571	4422571	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	CHAF1A	NM_005483	exon5	c.G1026A	p.E342E	TCAGGAGCGTCTG	.	79.0	23.0	137.0	0.0	.	69	.	.	Atlas-SNP
ZNF627	199692	hgsc.bcm.edu	hg19	19	11727702	11727702	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	ZNF627	NM_145295	exon4	c.A384G	p.P128P	TGAACCAAATGAA	.	173.0	70.0	167.0	0.0	.	43	.	.	Atlas-SNP
PGLS	25796	hgsc.bcm.edu	hg19	19	17626986	17626986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	PGLS	NM_012088	exon2	c.A293G	p.H98R	AGACGCATCTTCT	.	81.0	26.0	115.0	0.0	.	12	.	.	Atlas-SNP
SIGLEC1	6614	hgsc.bcm.edu	hg19	20	3679945	3679945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	SIGLEC1	NM_023068	exon7	c.G1690T	p.A564S	AGGCCGCGGGGAG	.	157.0	86.0	155.0	0.0	.	210	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7576863	7576863	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	TP53,sinonasal_and_nasal_cavity,lymphoid_neoplasm,0,3	TP53	NM_001126112	exon9	c.984delC	p.F328fs	.	.	68.0	41.0	186.0	0.0	.	33396	.	.	Atlas-INDEL
WNK3	65267	hgsc.bcm.edu	hg19	X	54264775	54264776	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	WNK3	NM_020922	exon19	c.4014_4014del	p.1338_1338del	.	.	65.0	49.0	67.0	0.0	.	218	.	.	Atlas-INDEL
TMEM165	55858	hgsc.bcm.edu	hg19	4	56284075	56284077	+	In_Frame_Del	DEL	CAA	CAA	-	novel		TCGA-DD-AACE-01A-11D-A40R-10	TCGA-DD-AACE-10A-01D-A40U-10	CAA	CAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b4d8378-ded6-4a8c-9839-6e437ce1d88a	ba4f8145-e3ba-4242-a382-1c87a35ed636	.	TMEM165	NM_018475	exon4	c.714_716del	p.238_239del	.	.	159.0	60.0	255.0	0.0	.	12	.	.	Atlas-INDEL
