Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
RPL11	6135	hgsc.bcm.edu	hg19	1	24020395	24020395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	RPL11	NM_000975	exon3	c.G256T	p.G86C	GAGAAGGGTCTAA	.	96.0	43.0	68.0	0.0	.	21	.	.	Atlas-SNP
IL22RA1	58985	hgsc.bcm.edu	hg19	1	24448089	24448089	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	IL22RA1	NM_021258	exon7	c.G931C	p.E311Q	CGGGCTCCCTGGG	.	82.0	24.0	77.0	0.0	.	62	.	.	Atlas-SNP
EPHA10	284656	hgsc.bcm.edu	hg19	1	38187384	38187384	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	EPHA10	NM_001099439	exon11	c.G2094A	p.L698L	CTGGCCCAGCGTG	.	214.0	85.0	190.0	0.0	.	120	.	.	Atlas-SNP
FOXE3	2301	hgsc.bcm.edu	hg19	1	47881990	47881990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	FOXE3	NM_012186	exon1	c.G3A	p.M1I	GCCGATGGCGGGG	.	36.0	13.0	23.0	0.0	.	8	.	.	Atlas-SNP
ELTD1	64123	hgsc.bcm.edu	hg19	1	79392770	79392770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	ELTD1	NM_022159	exon8	c.T884C	p.V295A	ACTGCAACATTGC	.	128.0	49.0	122.0	0.0	.	143	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152277071	152277071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	FLG	NM_002016	exon3	c.C10291A	p.Q3431K	TGTCCTGACCCTC	.	171.0	14.0	65.0	0.0	.	900	.	.	Atlas-SNP
ARHGEF11	9826	hgsc.bcm.edu	hg19	1	156908219	156908219	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	ARHGEF11	NM_198236	exon38	c.A4183T	p.K1395X	TAGCCTTTGTTCC	.	133.0	98.0	40.0	0.0	.	168	.	.	Atlas-SNP
DUSP27	92235	hgsc.bcm.edu	hg19	1	167097070	167097070	+	Missense_Mutation	SNP	G	G	T	rs61748781	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	DUSP27	NM_001080426	exon5	c.G2702T	p.R901L	CTTCCCGCAGTAA	.	111.0	78.0	42.0	0.0	.	235	.	G|0.987;A|0.013	Atlas-SNP
DHX9	1660	hgsc.bcm.edu	hg19	1	182856333	182856333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	DHX9	NM_001357	exon28	c.G3577T	p.G1193C	AGTGGAGGCTATG	.	109.0	5.0	126.0	0.0	.	114	.	.	Atlas-SNP
KIF14	9928	hgsc.bcm.edu	hg19	1	200522691	200522691	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	KIF14	NM_014875	exon30	c.T4772C	p.L1591S	GGTTTCAACAAAT	.	428.0	291.0	173.0	0.0	.	156	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237961396	237961396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	RYR2	NM_001035	exon97	c.G14016A	p.M4672I	TGGCATGGACAAG	.	246.0	189.0	117.0	0.0	.	1273	.	.	Atlas-SNP
CENPA	1058	hgsc.bcm.edu	hg19	2	27015082	27015082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	CENPA	NM_001042426	exon2	c.A184G	p.I62V	CTCTTGATAAGGA	.	90.0	32.0	89.0	0.0	.	13	.	.	Atlas-SNP
R3HDM1	23518	hgsc.bcm.edu	hg19	2	136437817	136437817	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	R3HDM1	NM_015361	exon20	c.T2277A	p.S759S	TCAGTCTAATCAA	.	133.0	56.0	114.0	0.0	.	84	.	.	Atlas-SNP
ITGB6	3694	hgsc.bcm.edu	hg19	2	161052096	161052096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	ITGB6	NM_000888	exon4	c.G377A	p.R126H	GTCTGGCGGACAT	.	58.0	16.0	58.0	0.0	.	68	.	.	Atlas-SNP
STK39	27347	hgsc.bcm.edu	hg19	2	168986092	168986092	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	STK39	NM_013233	exon10	c.C1048T	p.L350L	TAAGCAGCTTCTC	.	169.0	59.0	128.0	0.0	.	95	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179455790	179455790	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	TTN	NM_001267550	exon304	c.T60662G	p.V20221G	GAGACAACACCCC	.	150.0	28.0	109.0	0.0	.	18412	.	.	Atlas-SNP
FAM171B	165215	hgsc.bcm.edu	hg19	2	187559065	187559065	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	FAM171B	NM_177454	exon1	c.G165A	p.Q55Q	ACAACAGCAAAAG	.	116.0	8.0	109.0	0.0	.	146	.	.	Atlas-SNP
COL3A1	1281	hgsc.bcm.edu	hg19	2	189873710	189873710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	COL3A1	NM_000090	exon48	c.T3586C	p.C1196R	GGTCCTTGCTGTG	.	173.0	70.0	128.0	0.0	.	292	.	.	Atlas-SNP
PIKFYVE	200576	hgsc.bcm.edu	hg19	2	209195391	209195391	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	PIKFYVE	NM_015040	exon23	c.A3936G	p.T1312T	TCTTACATATTCC	.	75.0	34.0	88.0	0.0	.	223	.	.	Atlas-SNP
PRICKLE2	166336	hgsc.bcm.edu	hg19	3	64132537	64132537	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	PRICKLE2	NM_198859	exon7	c.C1629A	p.S543S	TTCCATGGAGCCC	.	63.0	25.0	60.0	0.0	.	88	.	.	Atlas-SNP
KIAA2018	205717	hgsc.bcm.edu	hg19	3	113376412	113376412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	KIAA2018	NM_001009899	exon7	c.A4117G	p.M1373V	CCATCATTTGAGT	.	82.0	37.0	76.0	0.0	.	180	.	.	Atlas-SNP
GFM1	85476	hgsc.bcm.edu	hg19	3	158363556	158363556	+	Missense_Mutation	SNP	G	G	C	rs140377587	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	GFM1	NM_024996	exon2	c.G220C	p.A74P	AGAATTGCAAAGA	.	108.0	43.0	115.0	0.0	.	83	.	G|0.998;T|0.002	Atlas-SNP
KIAA1211	57482	hgsc.bcm.edu	hg19	4	57173769	57173769	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	KIAA1211	NM_020722	exon5	c.C189T	p.N63N	GGCAAACAGTGGA	.	107.0	35.0	86.0	0.0	.	178	.	.	Atlas-SNP
TMPRSS11D	9407	hgsc.bcm.edu	hg19	4	68703989	68703989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	TMPRSS11D	NM_004262	exon5	c.A376G	p.N126D	CATTGTTATTTCT	.	114.0	43.0	91.0	0.0	.	68	.	.	Atlas-SNP
ADH4	127	hgsc.bcm.edu	hg19	4	100057655	100057655	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	ADH4	NM_000670	exon5	c.T544G	p.F182V	TTGAAAACCCACA	.	80.0	31.0	70.0	0.0	.	35	.	.	Atlas-SNP
NUDT6	11162	hgsc.bcm.edu	hg19	4	123814266	123814266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	NUDT6	NM_007083	exon5	c.T668C	p.M223T	ATATACATATCTG	.	63.0	26.0	52.0	0.0	.	50	.	.	Atlas-SNP
FGA	2243	hgsc.bcm.edu	hg19	4	155507834	155507834	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	FGA	NM_000508	exon5	c.G747C	p.K249N	TAATGCCTTCCAC	.	104.0	37.0	101.0	0.0	.	179	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13876819	13876819	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	DNAH5	NM_001369	exon22	c.A3370T	p.S1124C	TTGTGCTAAGCAC	.	145.0	69.0	163.0	0.0	.	868	.	.	Atlas-SNP
C5orf42	65250	hgsc.bcm.edu	hg19	5	37213755	37213755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	C5orf42	NM_023073	exon16	c.G2826T	p.M942I	ACGAGCCATGGAC	.	417.0	164.0	390.0	1.0	.	422	.	.	Atlas-SNP
MAST4	375449	hgsc.bcm.edu	hg19	5	66430370	66430370	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	MAST4	NM_001164664	exon18	c.A2246G	p.Y749C	CTGAATACATTGC	.	100.0	38.0	103.0	0.0	.	218	.	.	Atlas-SNP
CRHBP	1393	hgsc.bcm.edu	hg19	5	76254694	76254694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	CRHBP	NM_001882	exon5	c.G673A	p.V225I	GGACACGTAAATG	.	103.0	9.0	51.0	0.0	.	46	.	.	Atlas-SNP
CTNNA1	1495	hgsc.bcm.edu	hg19	5	138269736	138269736	+	Silent	SNP	G	G	A	rs1059181	bycluster	TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	CTNNA1	NM_001903	exon18	c.G2679A	p.P893P	GAACCCGGTGCAG	.	74.0	46.0	33.0	0.0	.	114	.	.	Atlas-SNP
PCDHA13	56136	hgsc.bcm.edu	hg19	5	140262783	140262783	+	Silent	SNP	C	C	T	rs145698462	alternate_allele	TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	PCDHA13	NM_031865	exon1	c.C930T	p.F310F	AGATTTCGAAGAA	.	180.0	110.0	137.0	0.0	.	213	.	C|1.000;A|0.000	Atlas-SNP
PCDHGB5	56101	hgsc.bcm.edu	hg19	5	140779699	140779699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	.	NM_018925	exon1	c.C2005T	p.P669S	GTGCTGCCGGATA	.	91.0	61.0	55.0	0.0	.	.	.	.	Atlas-SNP
NMUR2	56923	hgsc.bcm.edu	hg19	5	151784456	151784456	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	NMUR2	NM_020167	exon1	c.C219T	p.H73H	AGCCTGGTGCTGC	.	185.0	60.0	118.0	0.0	.	111	.	.	Atlas-SNP
POM121L2	94026	hgsc.bcm.edu	hg19	6	27277615	27277615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	POM121L2	NM_033482	exon1	c.A2335G	p.T779A	CATTTGTGGCACC	.	107.0	48.0	127.0	0.0	.	61	.	.	Atlas-SNP
HLA-DPB1	3115	hgsc.bcm.edu	hg19	6	33053995	33053995	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	HLA-DPB1	NM_002121	exon5	c.758-1G>T	.	ATTTCAGTTCAAC	.	79.0	18.0	93.0	0.0	.	28	.	.	Atlas-SNP
PPP1R17	10842	hgsc.bcm.edu	hg19	7	31735231	31735231	+	Silent	SNP	A	A	T	rs367575540	alternate_allele	TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	.	NM_006658	exon3	c.A231T	p.I77I	TTTCATACCAGGT	.	228.0	130.0	106.0	0.0	.	.	.	.	Atlas-SNP
TBX20	57057	hgsc.bcm.edu	hg19	7	35288373	35288373	+	Missense_Mutation	SNP	G	G	A	rs112862467	alternate_allele	TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	TBX20	NM_001077653	exon3	c.C461T	p.P154L	TCCACAGGGACGA	.	187.0	102.0	111.0	0.0	.	96	.	G|0.998;C|0.002	Atlas-SNP
ZNF713	349075	hgsc.bcm.edu	hg19	7	55990926	55990926	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	ZNF713	NM_182633	exon2	c.A120T	p.Q40H	TGCCCAAAAGAAC	.	98.0	16.0	79.0	0.0	.	47	.	.	Atlas-SNP
SLC25A13	10165	hgsc.bcm.edu	hg19	7	95820436	95820436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	SLC25A13	NM_001160210	exon7	c.G739T	p.V247F	CTTCAACATCTTT	.	48.0	42.0	47.0	0.0	.	131	.	.	Atlas-SNP
LMBR1	64327	hgsc.bcm.edu	hg19	7	156555801	156555801	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	LMBR1	NM_022458	exon8	c.619+1G>T	.	TACTTACAGAGAA	.	445.0	225.0	278.0	1.0	.	35	.	.	Atlas-SNP
SMIM19	0	hgsc.bcm.edu	hg19	8	42401693	42401693	+	Silent	SNP	C	C	G	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	.	NM_001135675	exon2	c.C78G	p.T26T	AGCCACCAATGTT	.	107.0	36.0	121.0	0.0	.	.	.	.	Atlas-SNP
SLCO5A1	81796	hgsc.bcm.edu	hg19	8	70591797	70591797	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	SLCO5A1	NM_030958	exon8	c.A1840T	p.T614S	CCACGGTGGGTGG	.	152.0	36.0	86.0	0.0	.	142	.	.	Atlas-SNP
CRISPLD1	83690	hgsc.bcm.edu	hg19	8	75932274	75932274	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	CRISPLD1	NM_031461	exon12	c.C1204T	p.Q402X	GTGGAACAGCTCT	.	155.0	47.0	120.0	0.0	.	94	.	.	Atlas-SNP
SLC25A32	81034	hgsc.bcm.edu	hg19	8	104415462	104415462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	SLC25A32	NM_030780	exon4	c.G482T	p.R161L	TATTGTCGGTGTG	.	138.0	32.0	106.0	0.0	.	36	.	.	Atlas-SNP
DDX58	23586	hgsc.bcm.edu	hg19	9	32457126	32457126	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	DDX58	NM_014314	exon18	c.C2772A	p.S924S	TCATTTGGACATT	.	83.0	18.0	69.0	0.0	.	82	.	.	Atlas-SNP
SLC2A6	11182	hgsc.bcm.edu	hg19	9	136338644	136338644	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	SLC2A6	NM_017585	exon8	c.C1115G	p.T372S	CCCGCAGTGCTGT	.	107.0	22.0	129.0	0.0	.	31	.	.	Atlas-SNP
DDX50	79009	hgsc.bcm.edu	hg19	10	70673827	70673827	+	Missense_Mutation	SNP	A	A	G	rs202146235		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	DDX50	NM_024045	exon7	c.A956G	p.N319S	AAGACAATCCTCA	.	97.0	68.0	150.0	0.0	.	65	.	A|0.999;G|0.001	Atlas-SNP
TLX1	3195	hgsc.bcm.edu	hg19	10	102891823	102891823	+	Silent	SNP	C	C	G	rs2742016	alternate_allele	TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	TLX1	NM_005521	exon1	c.C525G	p.P175P	CTTCCCCTGGATG	.	7.0	7.0	3.0	0.0	.	20	.	.	Atlas-SNP
DUSP5	1847	hgsc.bcm.edu	hg19	10	112258097	112258097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	DUSP5	NM_004419	exon1	c.C218A	p.A73E	CGCGCGCGCGGCT	.	28.0	23.0	21.0	0.0	.	62	.	.	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	hg19	11	1028253	1028253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	MUC6	NM_005961	exon14	c.G1726T	p.D576Y	AGGGGTCAGTCTC	.	256.0	32.0	143.0	0.0	.	408	.	.	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	hg19	11	1028287	1028287	+	Silent	SNP	C	C	G	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	MUC6	NM_005961	exon14	c.G1692C	p.A564A	GTTCCCCGCCCGC	.	281.0	45.0	171.0	0.0	.	408	.	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	hg19	11	1247915	1247915	+	Silent	SNP	C	C	T	rs377569377		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	MUC5B	NM_002458	exon4	c.C270T	p.G90G	CGACGGCGACGTC	.	109.0	44.0	80.0	0.0	.	473	.	.	Atlas-SNP
OR2AG1	144125	hgsc.bcm.edu	hg19	11	6806660	6806660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	OR2AG1,NS,carcinoma,0,2	OR2AG1	NM_001004489	exon1	c.C392A	p.T131K	CTCTGACATACAT	.	164.0	8.0	87.0	0.0	.	57	.	.	Atlas-SNP
OR5T2	219464	hgsc.bcm.edu	hg19	11	55999712	55999712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	OR5T2	NM_001004746	exon1	c.A950G	p.Y317C	ATGGTGTAAAATA	.	94.0	37.0	88.0	0.0	.	107	.	.	Atlas-SNP
CLCF1	23529	hgsc.bcm.edu	hg19	11	67135046	67135046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	CLCF1	NM_013246	exon2	c.C68T	p.P23L	ACTGCAGGGAGGT	.	57.0	8.0	43.0	0.0	.	15	.	.	Atlas-SNP
RPUSD4	84881	hgsc.bcm.edu	hg19	11	126075666	126075666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	RPUSD4	NM_001144827	exon4	c.G568T	p.V190L	CATGCACAGTGAT	.	59.0	18.0	35.0	0.0	.	36	.	.	Atlas-SNP
CELA1	1990	hgsc.bcm.edu	hg19	12	51723540	51723540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	CELA1	NM_001971	exon7	c.C687A	p.S229R	GCCCCGGCTGGAC	.	58.0	18.0	53.0	0.0	.	39	.	.	Atlas-SNP
MFSD5	84975	hgsc.bcm.edu	hg19	12	53647163	53647163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	MFSD5	NM_001170790	exon2	c.G865T	p.A289S	GTGCTGGCTGTAG	.	45.0	19.0	39.0	0.0	.	40	.	.	Atlas-SNP
MUCL1	118430	hgsc.bcm.edu	hg19	12	55248916	55248916	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	MUCL1	NM_058173	exon2	c.T75A	p.A25A	AACAGCTGCTCCA	.	89.0	34.0	86.0	0.0	.	11	.	.	Atlas-SNP
LEMD3	23592	hgsc.bcm.edu	hg19	12	65563653	65563653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	LEMD3	NM_001167614	exon1	c.C277T	p.P93S	GTCCGGCCGGTCT	.	779.0	304.0	737.0	1.0	.	68	.	.	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	70953387	70953387	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	PTPRB	NM_001109754	exon18	c.C4450G	p.L1484V	ACATAAGACTGGG	.	111.0	52.0	115.0	0.0	.	676	.	.	Atlas-SNP
FBXW8	26259	hgsc.bcm.edu	hg19	12	117383227	117383227	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	FBXW8	NM_153348	exon3	c.A482T	p.Q161L	TGTGCCAGCAGGA	.	82.0	24.0	76.0	0.0	.	53	.	.	Atlas-SNP
TMEM132D	121256	hgsc.bcm.edu	hg19	12	129566302	129566302	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	TMEM132D	NM_133448	exon8	c.1923+2T>C	.	TTTTTTACCTGAA	.	104.0	41.0	69.0	0.0	.	299	.	.	Atlas-SNP
ZNF268	10795	hgsc.bcm.edu	hg19	12	133781098	133781098	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	ZNF268	NM_001165881	exon6	c.T2826C	p.H942H	AACTCATGTAGAT	.	8.0	7.0	1.0	0.0	.	71	.	.	Atlas-SNP
POSTN	10631	hgsc.bcm.edu	hg19	13	38154710	38154710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	POSTN	NM_006475	exon11	c.A1517G	p.D506G	CGCTTATCTTGTT	.	78.0	40.0	70.0	0.0	.	161	.	.	Atlas-SNP
IPO4	79711	hgsc.bcm.edu	hg19	14	24653203	24653203	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	IPO4	NM_024658	exon19	c.1869+1G>C	.	TGCTCACCACAAT	.	45.0	18.0	44.0	0.0	.	74	.	.	Atlas-SNP
TRAPPC6B	122553	hgsc.bcm.edu	hg19	14	39623438	39623438	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	TRAPPC6B	NM_001079537	exon4	c.C328T	p.Q110X	AATACTGTTTTCC	.	89.0	21.0	54.0	0.0	.	13	.	.	Atlas-SNP
ATG2B	55102	hgsc.bcm.edu	hg19	14	96809568	96809568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	ATG2B	NM_018036	exon5	c.A632G	p.H211R	GGTTGATGCACAT	.	51.0	33.0	99.0	0.0	.	169	.	.	Atlas-SNP
PLA2G4E	123745	hgsc.bcm.edu	hg19	15	42287601	42287601	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	PLA2G4E	NM_001206670	exon12	c.C1204T	p.L402L	AGTCCAGGAGGTT	.	84.0	30.0	65.0	0.0	.	60	.	.	Atlas-SNP
CD19	930	hgsc.bcm.edu	hg19	16	28947906	28947906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	CD19,NS,neuroblastoma,0,1	CD19	NM_001178098	exon7	c.C1069T	p.P357S	CCCACACCCACCT	.	37.0	18.0	33.0	0.0	.	65	.	.	Atlas-SNP
FAM65A	79567	hgsc.bcm.edu	hg19	16	67575468	67575468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	FAM65A	NM_001193523	exon11	c.G997A	p.E333K	AGCCTGGAAGTCA	.	57.0	41.0	94.0	0.0	.	104	.	.	Atlas-SNP
AKAP10	11216	hgsc.bcm.edu	hg19	17	19827755	19827755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	AKAP10	NM_007202	exon11	c.G1717T	p.D573Y	CTGGATCCAGACT	.	294.0	67.0	328.0	0.0	.	47	.	.	Atlas-SNP
TAOK1	57551	hgsc.bcm.edu	hg19	17	27869796	27869796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	TAOK1	NM_020791	exon20	c.A2762G	p.H921R	GACCTCACTGGGG	.	173.0	75.0	143.0	0.0	.	151	.	.	Atlas-SNP
HCRT	3060	hgsc.bcm.edu	hg19	17	40336391	40336391	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	HCRT	NM_001524	exon2	c.C177T	p.H59H	GGCCGCGTGATTG	.	49.0	8.0	44.0	0.0	.	3	.	.	Atlas-SNP
TMC6	11322	hgsc.bcm.edu	hg19	17	76121927	76121927	+	Missense_Mutation	SNP	G	G	T	rs117065924	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	TMC6	NM_001127198	exon5	c.C310A	p.R104S	CCGTGCGGTTGTA	.	111.0	22.0	135.0	0.0	.	42	.	G|0.996;A|0.004	Atlas-SNP
MC2R	4158	hgsc.bcm.edu	hg19	18	13884907	13884907	+	Missense_Mutation	SNP	G	G	T	rs202040791		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	MC2R	NM_000529	exon2	c.C611A	p.T204N	TTCCTGGTGTGGG	.	158.0	74.0	136.0	0.0	.	78	.	.	Atlas-SNP
ATP8B1	5205	hgsc.bcm.edu	hg19	18	55373803	55373803	+	Silent	SNP	G	G	C	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	ATP8B1	NM_005603	exon3	c.C198G	p.V66V	TGCTTTGACTTGC	.	74.0	6.0	93.0	0.0	.	126	.	.	Atlas-SNP
SEC11C	90701	hgsc.bcm.edu	hg19	18	56819870	56819870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	SEC11C	NM_033280	exon3	c.A300T	p.E100D	AGTTGAAGGACGA	.	107.0	45.0	122.0	0.0	.	17	.	.	Atlas-SNP
EMR1	2015	hgsc.bcm.edu	hg19	19	6928158	6928158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	EMR1	NM_001974	exon17	c.G2225A	p.C742Y	ACAGCTGCTGGCT	.	30.0	20.0	42.0	0.0	.	153	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	8994527	8994527	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	MUC16	NM_024690	exon64	c.C41365G	p.L13789V	TCAGGAGATGGCT	.	82.0	54.0	134.0	0.0	.	4315	.	.	Atlas-SNP
GGN	199720	hgsc.bcm.edu	hg19	19	38876196	38876196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	GGN	NM_152657	exon3	c.C1706A	p.A569D	TGAGAGGCCCCGC	.	153.0	44.0	134.0	0.0	.	50	.	.	Atlas-SNP
HNRNPL	3191	hgsc.bcm.edu	hg19	19	39329533	39329533	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	HNRNPL	NM_001533	exon10	c.1355+1G>A	.	CACCTACCAGACA	.	47.0	21.0	62.0	0.0	.	67	.	.	Atlas-SNP
FCGBP	8857	hgsc.bcm.edu	hg19	19	40408687	40408687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	FCGBP	NM_003890	exon8	c.G4152T	p.Q1384H	CATCTGCTGGTAG	.	298.0	106.0	328.0	0.0	.	416	.	.	Atlas-SNP
KCNC3	3748	hgsc.bcm.edu	hg19	19	50826433	50826433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	KCNC3	NM_004977	exon2	c.G1777A	p.G593S	TGATGCCCCCGCT	.	29.0	8.0	45.0	0.0	.	41	.	.	Atlas-SNP
POLD1	5424	hgsc.bcm.edu	hg19	19	50921101	50921101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	POLD1	NM_002691	exon27	c.G3221A	p.R1074Q	GCAGCCGGGACTG	.	148.0	68.0	129.0	0.0	.	174	.	.	Atlas-SNP
LAIR1	3903	hgsc.bcm.edu	hg19	19	54868132	54868132	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	LAIR1	NM_002287	exon6	c.T551G	p.F184C	AGGCAGAAGAGGA	.	96.0	41.0	74.0	0.0	.	44	.	.	Atlas-SNP
NLRP2	55655	hgsc.bcm.edu	hg19	19	55494016	55494016	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	NLRP2	NM_017852	exon6	c.T950A	p.L317H	CCGTCCTCCTGGG	.	74.0	26.0	71.0	0.0	.	161	.	.	Atlas-SNP
BRWD1	54014	hgsc.bcm.edu	hg19	21	40608663	40608663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	BRWD1_ENST00000333229,caecum,carcinoma,0,2	BRWD1	NM_018963	exon23	c.A2624G	p.N875S	TGCAAATTGATGC	.	95.0	33.0	89.0	0.0	.	325	.	.	Atlas-SNP
PES1	23481	hgsc.bcm.edu	hg19	22	30985180	30985180	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	PES1	NM_014303	exon2	c.T102A	p.F34L	TCACCTAAAGTCA	.	62.0	31.0	28.0	0.0	.	55	.	.	Atlas-SNP
CACNA1I	8911	hgsc.bcm.edu	hg19	22	40058779	40058779	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	CACNA1I	NM_021096	exon18	c.3373-2A>T	.	CTTGCTAGACCCT	.	42.0	25.0	56.0	0.0	.	264	.	.	Atlas-SNP
SGSM3	27352	hgsc.bcm.edu	hg19	22	40804805	40804805	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	SGSM3	NM_015705	exon18	c.G1861T	p.E621X	TTGGATGAAGATG	.	71.0	29.0	72.0	0.0	.	48	.	.	Atlas-SNP
EP300	2033	hgsc.bcm.edu	hg19	22	41569712	41569712	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	EP300	NM_001429	exon29	c.A4703G	p.K1568R	GCAACAAGAAGAA	.	301.0	115.0	259.0	0.0	.	367	.	.	Atlas-SNP
PNPLA5	150379	hgsc.bcm.edu	hg19	22	44285214	44285214	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	PNPLA5,NS,carcinoma,0,1	PNPLA5	NM_138814	exon4	c.C697G	p.L233V	CCTCGAGGCTGGG	.	40.0	14.0	38.0	0.0	.	46	.	.	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53617377	53617377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	HUWE1	NM_031407	exon35	c.C4178T	p.A1393V	GACTCTGCCCTTT	.	43.0	37.0	50.0	0.0	.	724	.	.	Atlas-SNP
MAGEH1	28986	hgsc.bcm.edu	hg19	X	55478905	55478905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	MAGEH1	NM_014061	exon1	c.C98A	p.T33N	CCGAGACCCCTAT	.	58.0	44.0	46.0	0.0	.	37	.	.	Atlas-SNP
FANCB	2187	hgsc.bcm.edu	hg19	X	14863080	14863093	+	Frame_Shift_Del	DEL	AGTTACCACTTTCT	AGTTACCACTTTCT	-	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	AGTTACCACTTTCT	AGTTACCACTTTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	FANCB	NM_152633	exon7	c.1813_1826del	p.605_609del	.	.	92.0	54.0	183.0	0.0	.	78	.	.	Atlas-INDEL
KRTAP1-3	81850	hgsc.bcm.edu	hg19	17	39190968	39190968	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	KRTAP1-3	NM_030966	exon1	c.107delA	p.Q36fs	.	.	83.0	14.0	69.0	0.0	.	18	.	.	Atlas-INDEL
KRTAP22-1	337979	hgsc.bcm.edu	hg19	21	31973566	31973577	+	In_Frame_Del	DEL	TGGTTTTCTGGC	TGGTTTTCTGGC	-	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	TGGTTTTCTGGC	TGGTTTTCTGGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	KRTAP22-1	NM_181620	exon1	c.126_137del	p.42_46del	.	.	75.0	20.0	84.0	0.0	.	16	.	.	Atlas-INDEL
TIRAP	114609	hgsc.bcm.edu	hg19	11	126162928	126162930	+	In_Frame_Del	DEL	AGT	AGT	-	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	AGT	AGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	TIRAP	NM_148910	exon5	c.623_625del	p.208_209del	.	.	59.0	14.0	58.0	0.0	.	37	.	.	Atlas-INDEL
GP1BB	2812	hgsc.bcm.edu	hg19	22	19711909	19711931	+	Frame_Shift_Del	DEL	GGCCCGCGCTCGCGCCGCAGCCC	GGCCCGCGCTCGCGCCGCAGCCC	-	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	GGCCCGCGCTCGCGCCGCAGCCC	GGCCCGCGCTCGCGCCGCAGCCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	GP1BB	NM_000407	exon2	c.542_564del	p.181_188del	.	.	652.0	85.0	613.0	0.0	.	1	.	.	Atlas-INDEL
LPCAT4	254531	hgsc.bcm.edu	hg19	15	34659273	34659274	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	LPCAT4	NM_153613	exon1	c.29_30insG	p.A10fs	.	.	178.0	18.0	149.0	0.0	.	36	.	.	Atlas-INDEL
ALB	213	hgsc.bcm.edu	hg19	4	74286009	74286012	+	Frame_Shift_Del	DEL	CTTA	CTTA	-	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	CTTA	CTTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	ALB	NM_000477	exon14	c.1823_1826del	p.608_609del	.	.	168.0	67.0	166.0	0.0	.	132	.	.	Atlas-INDEL
KRTAP1-1	81851	hgsc.bcm.edu	hg19	17	39197544	39197544	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	KRTAP1-1	NM_030967	exon1	c.107delA	p.Q36fs	.	.	83.0	21.0	82.0	0.0	.	23	.	.	Atlas-INDEL
FANCB	2187	hgsc.bcm.edu	hg19	X	14863073	14863078	+	In_Frame_Del	DEL	TTAGGA	TTAGGA	-	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	TTAGGA	TTAGGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	FANCB	NM_152633	exon7	c.1828_1833del	p.610_611del	.	.	98.0	54.0	178.0	0.0	.	78	.	.	Atlas-INDEL
TCEANC	170082	hgsc.bcm.edu	hg19	X	13680785	13680786	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	TCEANC	NM_152634	exon4	c.247_248del	p.83_83del	.	.	113.0	87.0	92.0	0.0	.	29	.	.	Atlas-INDEL
TIRAP	114609	hgsc.bcm.edu	hg19	11	126162932	126162935	+	Frame_Shift_Del	DEL	AAAG	AAAG	-	novel		TCGA-DD-AACH-01A-11D-A40R-10	TCGA-DD-AACH-10A-01D-A40U-10	AAAG	AAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac	62e49f6d-fde8-4259-a620-199fc7b700e0	.	TIRAP	NM_148910	exon5	c.627_630del	p.209_210del	.	.	61.0	12.0	58.0	0.0	.	37	.	.	Atlas-INDEL
