Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CDK11B	984	hgsc.bcm.edu	hg19	1	1571767	1571767	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CDK11B	NM_033486	exon18	c.A1988T	p.E663V	GGGTGCTCGCTGA	.	91.0	38.0	96.0	0.0	.	37	.	.	Atlas-SNP
ESPN	83715	hgsc.bcm.edu	hg19	1	6500800	6500800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ESPN	NM_031475	exon4	c.G790T	p.G264W	CACGGCGGGGAGA	.	732.0	277.0	759.0	1.0	.	32	.	.	Atlas-SNP
H6PD	9563	hgsc.bcm.edu	hg19	1	9324489	9324489	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	H6PD	NM_004285	exon5	c.T1937A	p.I646N	TCCGGATCCCCTA	.	119.0	12.0	155.0	0.0	.	71	.	.	Atlas-SNP
SPSB1	80176	hgsc.bcm.edu	hg19	1	9416188	9416188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	SPSB1,right_lower_lobe,carcinoma,0,1	SPSB1	NM_025106	exon2	c.G238A	p.V80M	CATCCGGTGGCCC	.	134.0	13.0	129.0	0.0	.	22	.	.	Atlas-SNP
CLCN6	1185	hgsc.bcm.edu	hg19	1	11897423	11897423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CLCN6	NM_001286	exon20	c.A2162G	p.Y721C	ACCTATACCCTGA	.	90.0	9.0	83.0	0.0	.	77	.	.	Atlas-SNP
TNFRSF1B	7133	hgsc.bcm.edu	hg19	1	12251908	12251908	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TNFRSF1B	NM_001066	exon4	c.A385G	p.S129G	GCGCTGAGCAAGC	.	174.0	32.0	218.0	0.0	.	28	.	.	Atlas-SNP
EPHB2	2048	hgsc.bcm.edu	hg19	1	23235588	23235588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	EPHB2	NM_004442	exon13	c.T2429C	p.V810A	GTGATGTGTGGAG	.	112.0	41.0	137.0	0.0	.	257	.	.	Atlas-SNP
PHC2	1912	hgsc.bcm.edu	hg19	1	33794569	33794569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PHC2	NM_198040	exon13	c.A2324G	p.H775R	CGCATATGCATGT	.	47.0	11.0	58.0	0.0	.	78	.	.	Atlas-SNP
RLF	6018	hgsc.bcm.edu	hg19	1	40701476	40701476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	RLF	NM_012421	exon8	c.G1102T	p.G368C	GATGCTGGTCTTG	.	262.0	42.0	279.0	0.0	.	152	.	.	Atlas-SNP
INADL	10207	hgsc.bcm.edu	hg19	1	62263013	62263013	+	Nonsense_Mutation	SNP	C	C	T	rs200079447		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	INADL,NS,carcinoma,0,2	INADL	NM_176877	exon11	c.C1315T	p.R439X	GTATTACGAAATG	.	126.0	46.0	107.0	0.0	.	179	.	C|0.999;T|0.001	Atlas-SNP
IL12RB2	3595	hgsc.bcm.edu	hg19	1	67855778	67855778	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	IL12RB2	NM_001559	exon15	c.T2013C	p.N671N	AGCAAATAGCACT	.	66.0	8.0	94.0	0.0	.	94	.	.	Atlas-SNP
ELTD1	64123	hgsc.bcm.edu	hg19	1	79383362	79383362	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ELTD1	NM_022159	exon12	c.A1706T	p.N569I	ATAAAGTTGTTTT	.	359.0	51.0	371.0	0.0	.	143	.	.	Atlas-SNP
MCOLN3	55283	hgsc.bcm.edu	hg19	1	85487861	85487861	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MCOLN3	NM_018298	exon11	c.C1212T	p.T404T	CTGAAGGGTCAAA	.	212.0	82.0	208.0	0.0	.	74	.	.	Atlas-SNP
PKN2	5586	hgsc.bcm.edu	hg19	1	89226006	89226006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PKN2	NM_006256	exon3	c.G451A	p.V151I	CTTAAAGTAAAAC	.	325.0	129.0	345.0	0.0	.	109	.	.	Atlas-SNP
EVI5	7813	hgsc.bcm.edu	hg19	1	93131551	93131551	+	Splice_Site	SNP	T	T	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	EVI5	NM_005665	exon12	c.1291-2A>C	.	AACCTCTGCCAAG	.	58.0	12.0	46.0	0.0	.	94	.	.	Atlas-SNP
SLC44A3	126969	hgsc.bcm.edu	hg19	1	95330430	95330430	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SLC44A3	NM_001114106	exon11	c.A1370T	p.Y457F	TCATGTACATGCA	.	48.0	5.0	46.0	0.0	.	109	.	.	Atlas-SNP
RSBN1	54665	hgsc.bcm.edu	hg19	1	114354782	114354782	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	RSBN1	NM_018364	exon1	c.G253C	p.V85L	GTTTAACTCCCCG	.	61.0	11.0	70.0	0.0	.	71	.	.	Atlas-SNP
CRNN	49860	hgsc.bcm.edu	hg19	1	152382558	152382558	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CRNN	NM_016190	exon3	c.G1000T	p.G334C	TCCTGCCTTGACC	.	308.0	56.0	147.0	0.0	.	78	.	.	Atlas-SNP
SPRR2A	6700	hgsc.bcm.edu	hg19	1	153029021	153029021	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SPRR2A	NM_005988	exon2	c.A191T	p.Q64L	TTTGACTGGCAGG	.	170.0	11.0	85.0	0.0	.	9	.	.	Atlas-SNP
KCNN3	3782	hgsc.bcm.edu	hg19	1	154744565	154744565	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	KCNN3	NM_001204087	exon3	c.T1334C	p.F445S	GTGTTGAAGTTGA	.	226.0	10.0	105.0	0.0	.	141	.	.	Atlas-SNP
IQGAP3	128239	hgsc.bcm.edu	hg19	1	156496381	156496381	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	IQGAP3	NM_178229	exon38	c.A4793T	p.Q1598L	TGGAGCTGCAGGA	.	116.0	10.0	66.0	0.0	.	146	.	.	Atlas-SNP
GPATCH4	54865	hgsc.bcm.edu	hg19	1	156565217	156565217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	GPATCH4	NM_015590	exon8	c.G916A	p.E306K	TCTTCTCCTCTTC	.	236.0	12.0	110.0	0.0	.	34	.	.	Atlas-SNP
NES	10763	hgsc.bcm.edu	hg19	1	156640722	156640722	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	NES	NM_006617	exon4	c.A3258T	p.S1086S	AGGCTCTGACCCC	.	318.0	22.0	152.0	0.0	.	196	.	.	Atlas-SNP
ISG20L2	81875	hgsc.bcm.edu	hg19	1	156697395	156697395	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ISG20L2	NM_030980	exon1	c.A50T	p.K17M	AATGCCTTTTTGG	.	112.0	13.0	38.0	0.0	.	43	.	.	Atlas-SNP
KIRREL	55243	hgsc.bcm.edu	hg19	1	158064686	158064686	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	KIRREL	NM_018240	exon15	c.T2050A	p.Y684N	CTGTCCTACGAGA	.	429.0	35.0	242.0	0.0	.	346	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158592934	158592934	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SPTA1	NM_003126	exon43	c.G5959T	p.E1987X	TGATCTCGGGAAG	.	391.0	39.0	182.0	0.0	.	720	.	.	Atlas-SNP
VSIG8	391123	hgsc.bcm.edu	hg19	1	159825697	159825697	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	VSIG8	NM_001013661	exon6	c.G947C	p.C316S	TCGCCGCAGGCCC	.	157.0	27.0	52.0	0.0	.	24	.	.	Atlas-SNP
VSIG8	391123	hgsc.bcm.edu	hg19	1	159825698	159825698	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	VSIG8	NM_001013661	exon6	c.T946A	p.C316S	CGCCGCAGGCCCC	.	157.0	28.0	55.0	0.0	.	24	.	.	Atlas-SNP
NDUFS2	4720	hgsc.bcm.edu	hg19	1	161180452	161180452	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	NDUFS2	NM_001166159	exon9	c.A938T	p.Q313L	ACGACCAGGTTGA	.	321.0	22.0	145.0	0.0	.	33	.	.	Atlas-SNP
DUSP27	92235	hgsc.bcm.edu	hg19	1	167096866	167096866	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	DUSP27	NM_001080426	exon5	c.T2498A	p.L833Q	TGGACCTAAAGGA	.	343.0	30.0	164.0	0.0	.	235	.	.	Atlas-SNP
SUCO	51430	hgsc.bcm.edu	hg19	1	172577940	172577940	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	.	NM_014283	exon23	c.A3319T	p.K1107X	GAAAAGAAGGTAA	.	669.0	61.0	312.0	0.0	.	.	.	.	Atlas-SNP
TNR	7143	hgsc.bcm.edu	hg19	1	175293604	175293604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TNR	NM_003285	exon22	c.A3845G	p.D1282G	TCATTGTCTCTAT	.	298.0	70.0	125.0	0.0	.	399	.	.	Atlas-SNP
TNR	7143	hgsc.bcm.edu	hg19	1	175334337	175334337	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TNR	NM_003285	exon12	c.C2396G	p.P799R	GCTGGGGGAGATG	.	266.0	144.0	116.0	0.0	.	399	.	.	Atlas-SNP
AXDND1	126859	hgsc.bcm.edu	hg19	1	179497527	179497527	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	AXDND1	NM_144696	exon23	c.T2676C	p.H892H	TGTTCATTCCAAA	.	153.0	24.0	64.0	0.0	.	142	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181685267	181685267	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CACNA1E	NM_001205293	exon10	c.1315+2T>A	.	TGTGGGTGAGTGG	.	126.0	10.0	67.0	0.0	.	778	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181767735	181767735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CACNA1E	NM_001205293	exon48	c.A6707G	p.H2236R	CCCTGCACGAAGA	.	126.0	14.0	72.0	0.0	.	778	.	.	Atlas-SNP
DHX9	1660	hgsc.bcm.edu	hg19	1	182811771	182811771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	DHX9	NM_001357	exon2	c.A70G	p.R24G	GAAATTAGAGCAG	.	270.0	26.0	123.0	0.0	.	114	.	.	Atlas-SNP
DHX9	1660	hgsc.bcm.edu	hg19	1	182827944	182827944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	DHX9	NM_001357	exon10	c.A977G	p.Q326R	AAAACCAAGTGGG	.	309.0	25.0	131.0	0.0	.	114	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	185987388	185987388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	HMCN1	NM_031935	exon34	c.A5374G	p.I1792V	CTGGTTATTGCTC	.	240.0	26.0	123.0	0.0	.	797	.	.	Atlas-SNP
LMOD1	25802	hgsc.bcm.edu	hg19	1	201915422	201915422	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	LMOD1	NM_012134	exon1	c.A47T	p.D16V	TCGATGTCGGGGT	.	252.0	25.0	112.0	0.0	.	59	.	.	Atlas-SNP
LAX1	54900	hgsc.bcm.edu	hg19	1	203734781	203734781	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	LAX1	NM_017773	exon1	c.A88T	p.R30X	CTGGACAGGTGAG	.	210.0	20.0	104.0	0.0	.	48	.	.	Atlas-SNP
ACBD3	64746	hgsc.bcm.edu	hg19	1	226340311	226340311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ACBD3	NM_022735	exon7	c.C1100T	p.P367L	ATTACTGGAAGAG	.	175.0	106.0	77.0	0.0	.	38	.	.	Atlas-SNP
NID1	4811	hgsc.bcm.edu	hg19	1	236205357	236205357	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	NID1	NM_002508	exon4	c.A988T	p.S330C	GGACGCTGGGCAC	.	212.0	27.0	137.0	0.0	.	196	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237729922	237729922	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	RYR2	NM_001035	exon28	c.C3270T	p.A1090A	CCGTGCCGAGAAG	.	284.0	54.0	122.0	0.0	.	1273	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237972236	237972236	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	RYR2	NM_001035	exon100	c.A14334T	p.V4778V	TGTTGTATACCTA	.	281.0	24.0	133.0	0.0	.	1273	.	.	Atlas-SNP
CHRM3	1131	hgsc.bcm.edu	hg19	1	240072372	240072372	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CHRM3	NM_000740	exon5	c.C1621G	p.P541A	GTGAACCCCGTGT	.	346.0	28.0	183.0	0.0	.	118	.	.	Atlas-SNP
ZNF124	7678	hgsc.bcm.edu	hg19	1	247320351	247320351	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ZNF124	NM_003431	exon4	c.T387C	p.S129S	AAGGTGACTGGAA	.	213.0	15.0	100.0	0.0	.	39	.	.	Atlas-SNP
OR2AK2	391191	hgsc.bcm.edu	hg19	1	248128887	248128887	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	OR2AK2	NM_001004491	exon1	c.A254C	p.D85A	TCGTTGACCTCAT	.	108.0	14.0	65.0	0.0	.	90	.	.	Atlas-SNP
OR2T12	127064	hgsc.bcm.edu	hg19	1	248458294	248458294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	OR2T12	NM_001004692	exon1	c.C587A	p.A196D	TACATGGCGTTTT	.	952.0	81.0	527.0	0.0	.	113	.	.	Atlas-SNP
SOX11	6664	hgsc.bcm.edu	hg19	2	5833868	5833868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SOX11	NM_003108	exon1	c.G1015A	p.V339M	CGCTCGGTGTCCA	.	64.0	7.0	53.0	0.0	.	69	.	.	Atlas-SNP
FAM179A	165186	hgsc.bcm.edu	hg19	2	29226472	29226472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	FAM179A	NM_199280	exon6	c.C754T	p.R252C	CCCTCCCGTGTGC	.	279.0	38.0	251.0	0.0	.	106	.	.	Atlas-SNP
XPO1	7514	hgsc.bcm.edu	hg19	2	61711207	61711207	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	XPO1	NM_003400	exon21	c.T2542G	p.F848V	AGAAAAAGTTCGT	.	174.0	41.0	127.0	0.0	.	108	.	.	Atlas-SNP
CCT7	10574	hgsc.bcm.edu	hg19	2	73477551	73477551	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CCT7	NM_006429	exon10	c.C1188A	p.V396V	GATCGTCAGGAGG	.	98.0	5.0	108.0	0.0	.	60	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613036	73613036	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ALMS1	NM_015120	exon1	c.G40C	p.E14Q	CTGGAGGAGGAGG	.	317.0	17.0	195.0	0.0	.	384	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613037	73613037	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ALMS1	NM_015120	exon1	c.A41T	p.E14V	TGGAGGAGGAGGA	.	321.0	23.0	195.0	0.0	.	384	.	.	Atlas-SNP
SLC4A5	57835	hgsc.bcm.edu	hg19	2	74475529	74475529	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SLC4A5	NM_021196	exon13	c.A1738C	p.S580R	CCGTGCTGCTGAG	.	125.0	39.0	93.0	0.0	.	215	.	.	Atlas-SNP
PROM2	150696	hgsc.bcm.edu	hg19	2	95943753	95943753	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PROM2	NM_144707	exon8	c.1050+1G>T	.	CAGGAGGTGAGAG	.	59.0	25.0	53.0	0.0	.	78	.	.	Atlas-SNP
TBC1D8	11138	hgsc.bcm.edu	hg19	2	101666875	101666875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TBC1D8	NM_001102426	exon5	c.A815C	p.Q272P	GTGATCTGGCTCG	.	66.0	14.0	60.0	0.0	.	169	.	.	Atlas-SNP
IL1R1	3554	hgsc.bcm.edu	hg19	2	102789169	102789169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	IL1R1	NM_000877	exon8	c.A862G	p.R288G	AACAAAAGAAGGA	.	208.0	35.0	170.0	0.0	.	52	.	.	Atlas-SNP
CCDC138	165055	hgsc.bcm.edu	hg19	2	109408129	109408129	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CCDC138	NM_144978	exon4	c.267-2A>T	.	TTTTAAAGCCTAG	.	85.0	15.0	92.0	0.0	.	49	.	.	Atlas-SNP
CNTNAP5	129684	hgsc.bcm.edu	hg19	2	125204373	125204373	+	Silent	SNP	C	C	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CNTNAP5	NM_130773	exon6	c.C777G	p.T259T	TGCCACCCTGGGC	.	152.0	53.0	165.0	0.0	.	405	.	.	Atlas-SNP
CNTNAP5	129684	hgsc.bcm.edu	hg19	2	125504881	125504881	+	Missense_Mutation	SNP	T	T	G	rs35085748	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CNTNAP5	NM_130773	exon14	c.T2150G	p.V717G	CTGGGGTCCAGCA	.	167.0	20.0	158.0	0.0	.	405	.	T|0.993;C|0.007	Atlas-SNP
CYP27C1	339761	hgsc.bcm.edu	hg19	2	127960995	127960995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CYP27C1	NM_001001665	exon2	c.A131G	p.E44G	ACGGTTTCTCCAT	.	95.0	14.0	94.0	0.0	.	52	.	.	Atlas-SNP
LIMS2	55679	hgsc.bcm.edu	hg19	2	128412026	128412026	+	Missense_Mutation	SNP	C	C	A	rs371008915	alternate_allele	TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	LIMS2	NM_017980	exon4	c.G403T	p.D135Y	CCAGGTCAGCCAG	.	193.0	76.0	207.0	0.0	.	33	.	.	Atlas-SNP
TMEM163	81615	hgsc.bcm.edu	hg19	2	135308172	135308172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TMEM163	NM_030923	exon4	c.G427T	p.A143S	CAGCGGCCGCGTT	.	98.0	18.0	80.0	0.0	.	34	.	.	Atlas-SNP
ZEB2	9839	hgsc.bcm.edu	hg19	2	145156008	145156008	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ZEB2	NM_014795	exon8	c.A2746T	p.S916C	GAATACTGGTCTG	.	180.0	42.0	152.0	0.0	.	218	.	.	Atlas-SNP
KIF5C	3800	hgsc.bcm.edu	hg19	2	149633278	149633278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	KIF5C	NM_004522	exon1	c.C92A	p.P31H	TCATCCCCAAATT	.	282.0	84.0	277.0	0.0	.	166	.	.	Atlas-SNP
KIF5C	3800	hgsc.bcm.edu	hg19	2	149633279	149633279	+	Silent	SNP	C	C	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	KIF5C	NM_004522	exon1	c.C93G	p.P31P	CATCCCCAAATTT	.	282.0	85.0	275.0	0.0	.	166	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	167992512	167992512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	XIRP2	NM_001199143	exon3	c.G502T	p.G168C	AAGAAAGGCAAGG	.	75.0	5.0	61.0	0.0	.	914	.	.	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170136923	170136923	+	Silent	SNP	G	G	T	rs373521676	alternate_allele	TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	LRP2	NM_004525	exon11	c.C1278A	p.A426A	ACCCACGGCCACT	.	115.0	5.0	118.0	0.0	.	751	.	.	Atlas-SNP
PPIG	9360	hgsc.bcm.edu	hg19	2	170488352	170488352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PPIG	NM_004792	exon11	c.A838G	p.I280V	CCTCCTATACCTG	.	80.0	4.0	78.0	0.0	.	100	.	.	Atlas-SNP
CIR1	9541	hgsc.bcm.edu	hg19	2	175213317	175213317	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CIR1	NM_004882	exon10	c.A1261T	p.S421C	TTCTGCTGTCATT	.	95.0	14.0	78.0	0.0	.	38	.	.	Atlas-SNP
HOXD12	3238	hgsc.bcm.edu	hg19	2	176965409	176965409	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	HOXD12	NM_021193	exon2	c.A734T	p.Q245L	ACCAGCAAGTCAA	.	345.0	53.0	320.0	0.0	.	25	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179424917	179424917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TTN	NM_001267550	exon326	c.C85942A	p.P28648T	ACACTGGATCTTC	.	161.0	46.0	147.0	0.0	.	18412	.	.	Atlas-SNP
ZSWIM2	151112	hgsc.bcm.edu	hg19	2	187713768	187713768	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ZSWIM2	NM_182521	exon1	c.C90G	p.S30R	GTAGATGCTGCTA	.	168.0	48.0	136.0	0.0	.	119	.	.	Atlas-SNP
TMEFF2	23671	hgsc.bcm.edu	hg19	2	192862989	192862989	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TMEFF2	NM_016192	exon7	c.A744T	p.A248A	TGTACCTGCATAA	.	52.0	9.0	47.0	0.0	.	54	.	.	Atlas-SNP
NRP2	8828	hgsc.bcm.edu	hg19	2	206641001	206641001	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	NRP2	NM_018534	exon16	c.A2472T	p.T824T	GCCCACAGTGGAC	.	53.0	9.0	54.0	0.0	.	179	.	.	Atlas-SNP
PTPRN	5798	hgsc.bcm.edu	hg19	2	220156208	220156208	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PTPRN	NM_002846	exon20	c.A2713T	p.I905F	CGATGATGGGGCA	.	246.0	40.0	240.0	0.0	.	138	.	.	Atlas-SNP
ACSL3	2181	hgsc.bcm.edu	hg19	2	223795465	223795465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ACSL3	NM_203372	exon13	c.G1667T	p.G556V	AAAATGGACAAAG	.	152.0	50.0	149.0	0.0	.	107	.	.	Atlas-SNP
SP140	11262	hgsc.bcm.edu	hg19	2	231109739	231109739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SP140	NM_007237	exon6	c.C608T	p.P203L	CTCTCCCAAAGGC	.	70.0	25.0	64.0	0.0	.	121	.	.	Atlas-SNP
TRPM8	79054	hgsc.bcm.edu	hg19	2	234854632	234854632	+	Missense_Mutation	SNP	C	C	T	rs200066478		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TRPM8	NM_024080	exon7	c.C832T	p.R278W	AAGCTCCGGAATC	.	119.0	13.0	120.0	0.0	.	146	.	.	Atlas-SNP
FBLN2	2199	hgsc.bcm.edu	hg19	3	13659731	13659731	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	FBLN2	NM_001998	exon6	c.T1885A	p.C629S	TACCACTGTGCCT	.	79.0	17.0	97.0	0.0	.	137	.	.	Atlas-SNP
BTD	686	hgsc.bcm.edu	hg19	3	15686472	15686472	+	Missense_Mutation	SNP	A	A	G	rs148193489		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	BTD	NM_000060	exon4	c.A1109G	p.Y370C	ATCCGTACTGTGA	.	132.0	24.0	124.0	0.0	.	49	.	A|1.000;G|0.000	Atlas-SNP
KCNH8	131096	hgsc.bcm.edu	hg19	3	19575195	19575195	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	KCNH8	NM_144633	exon16	c.T2928C	p.H976H	AGCTCATGAGCAA	.	90.0	15.0	94.0	0.0	.	189	.	.	Atlas-SNP
DCLK3	85443	hgsc.bcm.edu	hg19	3	36778744	36778744	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	DCLK3	NM_033403	exon2	c.C1407T	p.H469H	CTTGTCGTGCATG	.	155.0	32.0	152.0	0.0	.	95	.	.	Atlas-SNP
LRRFIP2	9209	hgsc.bcm.edu	hg19	3	37133031	37133031	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	LRRFIP2	NM_006309	exon20	c.1036-2A>G	.	ATATCCTGCAGGA	.	92.0	8.0	98.0	0.0	.	71	.	.	Atlas-SNP
CXCR6	10663	hgsc.bcm.edu	hg19	3	45988540	45988540	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CXCR6	NM_006564	exon2	c.T567A	p.T189T	TTCCACTGTGGTT	.	86.0	16.0	79.0	0.0	.	17	.	.	Atlas-SNP
MST1R	4486	hgsc.bcm.edu	hg19	3	49928638	49928638	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MST1R	NM_002447	exon17	c.G3636T	p.R1212R	GCAGTTCCGCGCA	.	51.0	9.0	58.0	0.0	.	205	.	.	Atlas-SNP
DOCK3	1795	hgsc.bcm.edu	hg19	3	51266174	51266174	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	DOCK3	NM_004947	exon18	c.A1730G	p.N577S	GCCCTAATATTCC	.	134.0	29.0	133.0	0.0	.	397	.	.	Atlas-SNP
GRM2	2912	hgsc.bcm.edu	hg19	3	51746843	51746843	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	GRM2	NM_000839	exon3	c.T805A	p.F269I	GTCCTGTTCACCC	.	75.0	20.0	75.0	0.0	.	91	.	.	Atlas-SNP
OR5H1	26341	hgsc.bcm.edu	hg19	3	97852435	97852435	+	Silent	SNP	A	A	T	rs376802329		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	OR5H1	NM_001005338	exon1	c.A894T	p.T298T	AGTCACAGTTTCA	.	68.0	10.0	66.0	0.0	.	71	.	.	Atlas-SNP
KCNAB1	7881	hgsc.bcm.edu	hg19	3	156009781	156009781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	KCNAB1	NM_172159	exon1	c.G85A	p.A29T	TCCACCGCCCCCA	.	226.0	25.0	253.0	0.0	.	176	.	.	Atlas-SNP
PDE6B	5158	hgsc.bcm.edu	hg19	4	656887	656887	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PDE6B	NM_001145291	exon15	c.1833-2A>T	.	TGTAACAGGTCCC	.	114.0	11.0	101.0	0.0	.	80	.	.	Atlas-SNP
SLC2A9	56606	hgsc.bcm.edu	hg19	4	9828041	9828041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SLC2A9	NM_020041	exon12	c.A1603G	p.K535E	TTATCTTACCATC	.	146.0	23.0	117.0	0.0	.	158	.	.	Atlas-SNP
PPARGC1A	10891	hgsc.bcm.edu	hg19	4	23826123	23826123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PPARGC1A	NM_013261	exon6	c.A766G	p.T256A	AAGTTGTTGGTTT	.	44.0	7.0	47.0	0.0	.	129	.	.	Atlas-SNP
SEL1L3	23231	hgsc.bcm.edu	hg19	4	25836852	25836852	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SEL1L3	NM_015187	exon3	c.A827T	p.E276V	GTGGCCTCCAGCT	.	99.0	21.0	87.0	0.0	.	62	.	.	Atlas-SNP
RFC1	5981	hgsc.bcm.edu	hg19	4	39304373	39304373	+	Missense_Mutation	SNP	C	C	T	rs199688793		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	RFC1	NM_001204747	exon17	c.G2327A	p.R776Q	TCAACCCGAGGTC	.	281.0	60.0	256.0	0.0	.	114	.	.	Atlas-SNP
NFXL1	152518	hgsc.bcm.edu	hg19	4	47900865	47900865	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	NFXL1	NM_152995	exon8	c.A998T	p.Q333L	CAAGGCTGACAGC	.	221.0	51.0	175.0	0.0	.	79	.	.	Atlas-SNP
YTHDC1	91746	hgsc.bcm.edu	hg19	4	69198561	69198561	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	YTHDC1	NM_001031732	exon6	c.A978G	p.S326S	CTTTTCTGAACCT	.	59.0	15.0	62.0	0.0	.	81	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	hg19	4	88534079	88534079	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	DSPP	NM_014208	exon4	c.T741G	p.S247R	TCCTAGTGGGAAT	.	287.0	130.0	242.0	0.0	.	174	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	hg19	4	88534092	88534092	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	DSPP	NM_014208	exon4	c.G754C	p.D252H	GGAGCAGATGAGG	.	272.0	119.0	243.0	0.0	.	174	.	.	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	hg19	4	104066278	104066278	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CENPE	NM_001813	exon32	c.A4786T	p.K1596X	CTCTTTTCATTTC	.	56.0	9.0	55.0	0.0	.	253	.	.	Atlas-SNP
TET2	54790	hgsc.bcm.edu	hg19	4	106157691	106157691	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TET2	NM_001127208	exon3	c.C2592T	p.H864H	GCATCACATGCAA	.	252.0	62.0	259.0	0.0	.	1762	.	.	Atlas-SNP
BBS12	166379	hgsc.bcm.edu	hg19	4	123663523	123663523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	BBS12	NM_001178007	exon3	c.C476T	p.P159L	TGTGTCCTTTTCT	.	160.0	37.0	157.0	0.0	.	63	.	.	Atlas-SNP
ZNF827	152485	hgsc.bcm.edu	hg19	4	146770559	146770559	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ZNF827	NM_178835	exon6	c.A2136G	p.P712P	GCCCTCTGGCATC	.	144.0	40.0	121.0	0.0	.	102	.	.	Atlas-SNP
ZNF827	152485	hgsc.bcm.edu	hg19	4	146770637	146770637	+	Silent	SNP	G	G	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ZNF827	NM_178835	exon6	c.C2058G	p.V686V	TATCGAGACATGG	.	122.0	47.0	83.0	0.0	.	102	.	.	Atlas-SNP
MAP9	79884	hgsc.bcm.edu	hg19	4	156289851	156289851	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MAP9	NM_001039580	exon5	c.A595T	p.T199S	GGGCAGTTTCTTT	.	141.0	34.0	118.0	0.0	.	79	.	.	Atlas-SNP
CDH18	1016	hgsc.bcm.edu	hg19	5	19591188	19591188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CDH18	NM_001167667	exon7	c.A977G	p.E326G	ATTCCTTCTCTGG	.	78.0	10.0	63.0	0.0	.	561	.	.	Atlas-SNP
NPR3	4883	hgsc.bcm.edu	hg19	5	32712409	32712409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	NPR3	NM_000908	exon1	c.G527A	p.R176H	TCACGCGCGTGGC	.	141.0	25.0	106.0	0.0	.	65	.	.	Atlas-SNP
NUP155	9631	hgsc.bcm.edu	hg19	5	37370982	37370982	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	NUP155	NM_153485	exon1	c.A98G	p.Q33R	TGCAACTGACGGT	.	97.0	12.0	70.0	0.0	.	116	.	.	Atlas-SNP
C9	735	hgsc.bcm.edu	hg19	5	39341729	39341729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	C9,right_upper_lobe,carcinoma,0,1	C9	NM_001737	exon3	c.G257A	p.R86Q	CACTGTCGTCTGT	.	173.0	26.0	146.0	0.0	.	116	.	.	Atlas-SNP
C5orf28	64417	hgsc.bcm.edu	hg19	5	43446346	43446346	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	C5orf28	NM_022483	exon3	c.A626T	p.H209L	ACTCCATGTTTTG	.	100.0	13.0	87.0	0.0	.	25	.	.	Atlas-SNP
PTCD2	79810	hgsc.bcm.edu	hg19	5	71618053	71618053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PTCD2	NM_024754	exon2	c.A182G	p.K61R	AACAAAAGAAAGT	.	107.0	11.0	99.0	0.0	.	31	.	.	Atlas-SNP
CMYA5	202333	hgsc.bcm.edu	hg19	5	79025753	79025753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CMYA5	NM_153610	exon2	c.A1165G	p.M389V	GCAACTATGTTCC	.	187.0	25.0	192.0	0.0	.	643	.	.	Atlas-SNP
LIX1	167410	hgsc.bcm.edu	hg19	5	96478229	96478229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	LIX1	NM_153234	exon1	c.C52T	p.H18Y	CTCTGTGAGGCAA	.	114.0	19.0	109.0	0.0	.	41	.	.	Atlas-SNP
PAM	5066	hgsc.bcm.edu	hg19	5	102326046	102326046	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PAM	NM_138822	exon15	c.T1554C	p.A518A	GGTGGCTCTAGAC	.	152.0	17.0	131.0	0.0	.	180	.	.	Atlas-SNP
GIN1	54826	hgsc.bcm.edu	hg19	5	102432263	102432263	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	GIN1	NM_017676	exon7	c.A1276T	p.R426X	ATTCTCTTATGTA	.	123.0	20.0	97.0	0.0	.	53	.	.	Atlas-SNP
TMEM232	642987	hgsc.bcm.edu	hg19	5	109954157	109954157	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TMEM232	NM_001039763	exon8	c.A875T	p.H292L	GTCTTATGGAAGA	.	99.0	21.0	86.0	0.0	.	57	.	.	Atlas-SNP
APC	324	hgsc.bcm.edu	hg19	5	112179022	112179022	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	APC	NM_001127510	exon17	c.A7731T	p.S2577S	TGCTTCATCAGAA	.	122.0	14.0	111.0	0.0	.	4158	.	.	Atlas-SNP
MCC	4163	hgsc.bcm.edu	hg19	5	112363149	112363149	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MCC	NM_001085377	exon19	c.G2910C	p.K970N	CTTTTTCTTTGCT	.	75.0	31.0	60.0	0.0	.	234	.	.	Atlas-SNP
SNCAIP	9627	hgsc.bcm.edu	hg19	5	121786551	121786551	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SNCAIP	NM_005460	exon10	c.T2009G	p.L670R	GACAGCTGATGCA	.	121.0	10.0	88.0	0.0	.	308	.	.	Atlas-SNP
ALDH7A1	501	hgsc.bcm.edu	hg19	5	125903957	125903957	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ALDH7A1	NM_001202404	exon9	c.A946T	p.R316W	CAAACCTCTCCTG	.	83.0	10.0	63.0	0.0	.	57	.	.	Atlas-SNP
LMNB1	4001	hgsc.bcm.edu	hg19	5	126141268	126141268	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	LMNB1	NM_005573	exon3	c.A522G	p.E174E	GTTGGAAGCCTCC	.	75.0	5.0	58.0	0.0	.	49	.	.	Atlas-SNP
ADAMTS19	171019	hgsc.bcm.edu	hg19	5	129019947	129019947	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ADAMTS19	NM_133638	exon18	c.C2781T	p.C927C	AGATTGCGATGCC	.	120.0	12.0	123.0	0.0	.	216	.	.	Atlas-SNP
IL5	3567	hgsc.bcm.edu	hg19	5	131879078	131879078	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	IL5	NM_000879	exon1	c.A93T	p.K31N	GGTCTCTTTCACC	.	142.0	20.0	116.0	0.0	.	7	.	.	Atlas-SNP
C5orf15	56951	hgsc.bcm.edu	hg19	5	133292672	133292672	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	C5orf15	NM_020199	exon3	c.C676G	p.L226V	GAACCAGAAGAAA	.	230.0	36.0	188.0	0.0	.	20	.	.	Atlas-SNP
TXNDC15	79770	hgsc.bcm.edu	hg19	5	134210212	134210212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TXNDC15	NM_024715	exon1	c.G95T	p.G32V	TCCGCGGCGTGGA	.	80.0	24.0	86.0	0.0	.	37	.	.	Atlas-SNP
PCDHA12	56137	hgsc.bcm.edu	hg19	5	140257026	140257026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PCDHA12	NM_018903	exon1	c.C1969T	p.P657S	GGTGAGCCCGCGC	.	194.0	14.0	158.0	0.0	.	196	.	.	Atlas-SNP
PCDHB16	57717	hgsc.bcm.edu	hg19	5	140562781	140562781	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PCDHB16	NM_020957	exon1	c.A647T	p.D216V	CGCTGGATGGTGG	.	68.0	9.0	68.0	0.0	.	159	.	.	Atlas-SNP
PCDHB12	56124	hgsc.bcm.edu	hg19	5	140589743	140589743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PCDHB12	NM_018932	exon1	c.A1264G	p.T422A	ACCATCACCGTCA	.	144.0	28.0	131.0	0.0	.	179	.	.	Atlas-SNP
SYNPO	11346	hgsc.bcm.edu	hg19	5	149997966	149997966	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SYNPO	NM_001166209	exon2	c.C37G	p.P13A	CTTGCACCCAGCG	.	178.0	30.0	189.0	0.0	.	147	.	.	Atlas-SNP
SYNPO	11346	hgsc.bcm.edu	hg19	5	149997969	149997969	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SYNPO	NM_001166209	exon2	c.A40T	p.S14C	GCACCCAGCGAAG	.	183.0	30.0	193.0	0.0	.	147	.	.	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150925156	150925156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	FAT2	NM_001447	exon9	c.C5532A	p.D1844E	TCCTTGGTCATGG	.	173.0	53.0	189.0	0.0	.	465	.	.	Atlas-SNP
CPEB4	80315	hgsc.bcm.edu	hg19	5	173372134	173372134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CPEB4	NM_030627	exon5	c.A1447G	p.I483V	CCAGACATTGATG	.	136.0	22.0	140.0	0.0	.	54	.	.	Atlas-SNP
TRIM7	81786	hgsc.bcm.edu	hg19	5	180626894	180626894	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TRIM7	NM_203293	exon3	c.A806T	p.Q269L	TGGATCTGGCTGC	.	80.0	8.0	73.0	0.0	.	56	.	.	Atlas-SNP
SSR1	6745	hgsc.bcm.edu	hg19	6	7301679	7301679	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SSR1	NM_003144	exon4	c.A407C	p.N136T	GTGAAATTCTGGA	.	177.0	23.0	130.0	0.0	.	21	.	.	Atlas-SNP
NKAPL	222698	hgsc.bcm.edu	hg19	6	28227649	28227649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	NKAPL	NM_001007531	exon1	c.G500T	p.S167I	GCAGCAGTTCAGA	.	142.0	18.0	129.0	0.0	.	72	.	.	Atlas-SNP
OR2J2	26707	hgsc.bcm.edu	hg19	6	29141609	29141609	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	OR2J2	NM_030905	exon1	c.A197C	p.N66T	TTTCAAACCTCTC	.	144.0	22.0	101.0	0.0	.	51	.	.	Atlas-SNP
PPP1R10	5514	hgsc.bcm.edu	hg19	6	30570416	30570416	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PPP1R10	NM_002714	exon19	c.A2010T	p.P670P	AGGGGGTGGAGGA	.	46.0	8.0	35.0	0.0	.	60	.	.	Atlas-SNP
COL11A2	1302	hgsc.bcm.edu	hg19	6	33144072	33144072	+	Silent	SNP	G	G	A	rs138650682	bycluster	TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	COL11A2,NS,carcinoma,0,1	COL11A2	NM_080680	exon28	c.C2178T	p.D726D	AATTCCGTCCACA	.	153.0	17.0	112.0	0.0	.	124	.	G|1.000;A|0.000	Atlas-SNP
ANKS1A	23294	hgsc.bcm.edu	hg19	6	35051203	35051203	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ANKS1A	NM_015245	exon20	c.G2917C	p.E973Q	TCTACGGAGCACA	.	128.0	15.0	96.0	0.0	.	123	.	.	Atlas-SNP
CUL9	23113	hgsc.bcm.edu	hg19	6	43160940	43160940	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CUL9	NM_015089	exon9	c.G2382A	p.G794G	GGCTGGGCTGGCG	.	85.0	33.0	67.0	0.0	.	248	.	.	Atlas-SNP
CUL9	23113	hgsc.bcm.edu	hg19	6	43182826	43182826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CUL9	NM_015089	exon30	c.G5698T	p.A1900S	CTGGAGGCCTGGC	.	84.0	4.0	76.0	0.0	.	248	.	.	Atlas-SNP
CUL9	23113	hgsc.bcm.edu	hg19	6	43182827	43182827	+	Missense_Mutation	SNP	C	C	T	rs146106470	bycluster	TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CUL9	NM_015089	exon30	c.C5699T	p.A1900V	TGGAGGCCTGGCA	.	83.0	4.0	78.0	0.0	.	248	.	C|1.000;T|0.000	Atlas-SNP
SLC22A7	10864	hgsc.bcm.edu	hg19	6	43269998	43269998	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SLC22A7	NM_153320	exon7	c.C1122T	p.N374N	GCTGAACGTGTAC	.	149.0	19.0	106.0	0.0	.	69	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56380255	56380255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	DST	NM_015548	exon53	c.A10700G	p.E3567G	CGATGTTCTTCCT	.	69.0	9.0	57.0	0.0	.	1427	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56380272	56380272	+	Silent	SNP	T	T	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	DST	NM_015548	exon53	c.A10683C	p.L3561L	CTGCCTTAGAGTT	.	83.0	9.0	72.0	0.0	.	1427	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	65300985	65300985	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	EYS	NM_001142800	exon26	c.T4775A	p.I1592K	GCTAATATCGCTG	.	66.0	14.0	75.0	0.0	.	527	.	.	Atlas-SNP
OOEP	441161	hgsc.bcm.edu	hg19	6	74079023	74079023	+	Silent	SNP	G	G	A	rs372105159		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	OOEP	NM_001080507	exon2	c.C276T	p.V92V	GATTTCGACTAGG	.	133.0	65.0	130.0	0.0	.	18	.	.	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75875410	75875410	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	COL12A1	NM_004370	exon14	c.T2796C	p.V932V	ACCGCGAACCATT	.	103.0	18.0	145.0	0.0	.	385	.	.	Atlas-SNP
PNISR	25957	hgsc.bcm.edu	hg19	6	99851737	99851737	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PNISR	NM_015491	exon9	c.A1124T	p.Q375L	CTGGACTGTGCCA	.	178.0	46.0	210.0	0.0	.	74	.	.	Atlas-SNP
PNISR	25957	hgsc.bcm.edu	hg19	6	99854007	99854007	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PNISR	NM_015491	exon7	c.A902G	p.E301G	GCAGCCTCAACAT	.	79.0	22.0	104.0	0.0	.	74	.	.	Atlas-SNP
MAN1A1	4121	hgsc.bcm.edu	hg19	6	119669665	119669665	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MAN1A1	NM_005907	exon2	c.A566T	p.D189V	GCGGCGTCGGCGG	.	89.0	21.0	111.0	0.0	.	77	.	.	Atlas-SNP
ENPP1	5167	hgsc.bcm.edu	hg19	6	132189188	132189188	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ENPP1	NM_006208	exon12	c.A1195T	p.M399L	GATGGTATGGTTG	.	80.0	19.0	93.0	0.0	.	108	.	.	Atlas-SNP
EYA4	2070	hgsc.bcm.edu	hg19	6	133767789	133767789	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	EYA4	NM_172105	exon4	c.A105T	p.L35L	GGACCTAGCAAGT	.	93.0	18.0	137.0	0.0	.	196	.	.	Atlas-SNP
BCLAF1	9774	hgsc.bcm.edu	hg19	6	136597258	136597258	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.,1	BCLAF1	NM_014739	exon5	c.G1405T	p.E469X	GCCTTTCCACTAC	.	107.0	17.0	102.0	0.0	.	203	.	.	Atlas-SNP
MAP7	9053	hgsc.bcm.edu	hg19	6	136693743	136693743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MAP7	NM_001198609	exon8	c.A862G	p.M288V	AGGGCATGATGAT	.	102.0	56.0	138.0	0.0	.	63	.	.	Atlas-SNP
ESR1	2099	hgsc.bcm.edu	hg19	6	152415601	152415601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ESR1	NM_000125	exon7	c.A1451G	p.D484G	TCACAGACACTTT	.	65.0	16.0	101.0	0.0	.	94	.	.	Atlas-SNP
EIF2AK1	27102	hgsc.bcm.edu	hg19	7	6080784	6080784	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	EIF2AK1	NM_014413	exon9	c.A858T	p.P286P	TTTTTCTGGGGTG	.	144.0	19.0	108.0	0.0	.	76	.	.	Atlas-SNP
INHBA	3624	hgsc.bcm.edu	hg19	7	41729994	41729994	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	INHBA	NM_002192	exon3	c.C535G	p.Q179E	GCTTCTGCTGCTG	.	93.0	11.0	67.0	0.0	.	118	.	.	Atlas-SNP
INHBA	3624	hgsc.bcm.edu	hg19	7	41730010	41730010	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	INHBA,NS,carcinoma,0,1	INHBA	NM_002192	exon3	c.C519T	p.I173I	GAGGCGGATGGTG	.	79.0	9.0	56.0	0.0	.	118	.	.	Atlas-SNP
DDC	1644	hgsc.bcm.edu	hg19	7	50563117	50563117	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	DDC_ENST00000380984,NS,carcinoma,0,2	DDC	NM_001242889	exon8	c.598-2A>T	.	GCAAACTGCCAAA	.	111.0	17.0	59.0	0.0	.	100	.	.	Atlas-SNP
ZNF679	168417	hgsc.bcm.edu	hg19	7	63726363	63726363	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ZNF679	NM_153363	exon5	c.A352T	p.S118C	GGAAAAAGTGGAC	.	227.0	31.0	142.0	0.0	.	80	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82582621	82582621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PCLO	NM_014510	exon5	c.G7648T	p.A2550S	AATCTGCTGAAGT	.	139.0	16.0	132.0	0.0	.	1506	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82595525	82595525	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PCLO	NM_014510	exon4	c.A3579T	p.Q1193H	TTGTTTTTGATCT	.	121.0	35.0	89.0	0.0	.	1506	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82764329	82764329	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PCLO	NM_014510	exon3	c.T2537A	p.V846D	GGGTCAACTTGTT	.	191.0	17.0	161.0	0.0	.	1506	.	.	Atlas-SNP
SEMA3A	10371	hgsc.bcm.edu	hg19	7	83610729	83610729	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SEMA3A	NM_006080	exon14	c.C1560T	p.Y520Y	TTTCCCGTAAATA	.	213.0	10.0	172.0	0.0	.	121	.	.	Atlas-SNP
SAMD9	54809	hgsc.bcm.edu	hg19	7	92731091	92731091	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SAMD9	NM_001193307	exon2	c.G4320C	p.W1440C	TTCTGGCCAGAAT	.	171.0	33.0	142.0	0.0	.	239	.	.	Atlas-SNP
DLX5	1749	hgsc.bcm.edu	hg19	7	96650106	96650106	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	DLX5	NM_005221	exon3	c.T812A	p.L271Q	GGCGGCAGGTGGG	.	117.0	12.0	115.0	0.0	.	52	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100680019	100680019	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MUC17	NM_001040105	exon3	c.T5322C	p.I1774I	TCCTATTGACACC	.	103.0	23.0	86.0	0.0	.	804	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100680551	100680551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MUC17	NM_001040105	exon3	c.G5854A	p.D1952N	CTTGCTGACACCA	.	94.0	24.0	81.0	0.0	.	804	.	.	Atlas-SNP
PMPCB	9512	hgsc.bcm.edu	hg19	7	102944347	102944347	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PMPCB	NM_004279	exon5	c.A516T	p.E172D	GATTGAACGTGAG	.	165.0	17.0	127.0	0.0	.	35	.	.	Atlas-SNP
SYPL1	6856	hgsc.bcm.edu	hg19	7	105752947	105752947	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SYPL1	NM_006754	exon1	c.A29T	p.Q10L	ATCCGCTGGCGAA	.	94.0	21.0	65.0	0.0	.	20	.	.	Atlas-SNP
ST7	7982	hgsc.bcm.edu	hg19	7	116862960	116862960	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ST7	NM_021908	exon16	c.A1684T	p.K562X	AATTGCAAGAGTA	.	91.0	11.0	92.0	0.0	.	64	.	.	Atlas-SNP
CTTNBP2	83992	hgsc.bcm.edu	hg19	7	117361141	117361141	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CTTNBP2	NM_033427	exon20	c.T4491C	p.N1497N	AGAAGCATTCCTG	.	91.0	30.0	78.0	0.0	.	200	.	.	Atlas-SNP
FLNC	2318	hgsc.bcm.edu	hg19	7	128486380	128486380	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	FLNC	NM_001127487	exon23	c.T3990A	p.Y1330X	CCTGTATGATGAG	.	82.0	12.0	78.0	0.0	.	339	.	.	Atlas-SNP
FLNC	2318	hgsc.bcm.edu	hg19	7	128497184	128497184	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	FLNC	NM_001458	exon46	c.A7574T	p.E2525V	CATCAGAGTTCAT	.	72.0	9.0	57.0	0.0	.	339	.	.	Atlas-SNP
KIAA1549	57670	hgsc.bcm.edu	hg19	7	138566238	138566238	+	Silent	SNP	C	C	T	rs377023001		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	KIAA1549_ENST00000422774,rectum,carcinoma,0,2	KIAA1549	NM_020910	exon11	c.G4125A	p.A1375A	CAGTGGCGCTGGC	.	143.0	35.0	135.0	0.0	.	314	.	.	Atlas-SNP
WEE2	494551	hgsc.bcm.edu	hg19	7	141424074	141424074	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	WEE2	NM_001105558	exon8	c.A1220T	p.E407V	TGCAAGAGGTATA	.	248.0	49.0	194.0	0.0	.	59	.	.	Atlas-SNP
MGAM	8972	hgsc.bcm.edu	hg19	7	141736006	141736006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MGAM	NM_004668	exon17	c.C1997A	p.P666H	ACACCCCTGAGGA	.	187.0	56.0	133.0	0.0	.	767	.	.	Atlas-SNP
GIMAP6	474344	hgsc.bcm.edu	hg19	7	150325135	150325135	+	Missense_Mutation	SNP	G	G	T	rs368001704	alternate_allele	TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	GIMAP6	NM_001244072	exon3	c.C761A	p.A254D	GCAAGGGCCTGGT	.	95.0	14.0	72.0	0.0	.	60	.	.	Atlas-SNP
GIMAP2	26157	hgsc.bcm.edu	hg19	7	150389814	150389814	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	GIMAP2	NM_015660	exon3	c.A440T	p.H147L	TTACCCACAAGGA	.	163.0	42.0	120.0	0.0	.	39	.	.	Atlas-SNP
GBX1	2636	hgsc.bcm.edu	hg19	7	150864157	150864157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	GBX1	NM_001098834	exon1	c.T479C	p.V160A	TCTGCCACTTTCT	.	183.0	22.0	156.0	0.0	.	21	.	.	Atlas-SNP
DNAJB6	10049	hgsc.bcm.edu	hg19	7	157160104	157160104	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	DNAJB6	NM_058246	exon5	c.C273T	p.F91F	TGGCTTCACATTC	.	139.0	30.0	86.0	0.0	.	39	.	.	Atlas-SNP
ADAMDEC1	27299	hgsc.bcm.edu	hg19	8	24259501	24259501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ADAMDEC1	NM_014479	exon12	c.A1216G	p.K406E	AAACCAAAGTGCC	.	79.0	10.0	78.0	0.0	.	69	.	.	Atlas-SNP
KCNU1	157855	hgsc.bcm.edu	hg19	8	36642022	36642022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	KCNU1	NM_001031836	exon1	c.T94C	p.F32L	TCTTCCTTTGTGA	.	145.0	28.0	92.0	0.0	.	359	.	.	Atlas-SNP
LSM1	27257	hgsc.bcm.edu	hg19	8	38029501	38029501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	LSM1	NM_014462	exon2	c.A97G	p.R33G	TGCTTCTTAAAAA	.	141.0	17.0	89.0	0.0	.	14	.	.	Atlas-SNP
CNBD1	168975	hgsc.bcm.edu	hg19	8	88365869	88365869	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CNBD1	NM_173538	exon10	c.A1158G	p.R386R	GAAAAGATCTCAA	.	552.0	31.0	352.0	0.0	.	206	.	.	Atlas-SNP
MATN2	4147	hgsc.bcm.edu	hg19	8	99033508	99033508	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MATN2	NM_002380	exon13	c.A1895C	p.K632T	TCTGCAAATGCTC	.	184.0	21.0	116.0	0.0	.	165	.	.	Atlas-SNP
SPAG1	6674	hgsc.bcm.edu	hg19	8	101178179	101178179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SPAG1	NM_003114	exon3	c.A278G	p.E93G	AATGGGAAAAAAT	.	261.0	33.0	164.0	0.0	.	80	.	.	Atlas-SNP
PABPC1	26986	hgsc.bcm.edu	hg19	8	101733713	101733713	+	Silent	SNP	C	C	G	rs148248545	alternate_allele	TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PABPC1	NM_002568	exon1	c.G99C	p.P33P	CCCGGCCGGGCTG	.	387.0	162.0	233.0	0.0	.	76	.	C|1.000;T|0.000	Atlas-SNP
EXT1	2131	hgsc.bcm.edu	hg19	8	118834756	118834756	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	EXT1	NM_000127	exon5	c.A1365T	p.L455L	CTGTGGTAGTACG	.	116.0	9.0	85.0	0.0	.	98	.	.	Atlas-SNP
ADCY8	114	hgsc.bcm.edu	hg19	8	131916177	131916177	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	ADCY8,colon,carcinoma,0,2	ADCY8	NM_001115	exon7	c.T1752C	p.T584T	TAAGTAAGTTTCG	.	184.0	39.0	103.0	0.0	.	291	.	.	Atlas-SNP
TG	7038	hgsc.bcm.edu	hg19	8	133894143	133894143	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TG	NM_003235	exon6	c.A674C	p.Q225P	CCTTCCAGAGGAG	.	128.0	14.0	87.0	0.0	.	416	.	.	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	hg19	8	139727943	139727943	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	COL22A1	NM_152888	exon30	c.A2499G	p.K833K	GTCACCTTTCAGT	.	126.0	8.0	64.0	0.0	.	390	.	.	Atlas-SNP
DENND3	22898	hgsc.bcm.edu	hg19	8	142160957	142160957	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	DENND3	NM_014957	exon6	c.A520G	p.I174V	CTCCAGATTGTGT	.	130.0	53.0	74.0	0.0	.	127	.	.	Atlas-SNP
COMMD5	28991	hgsc.bcm.edu	hg19	8	146076399	146076399	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	COMMD5	NM_001081004	exon2	c.T325G	p.F109V	CCCTGAAGGTGTC	.	166.0	34.0	76.0	0.0	.	18	.	.	Atlas-SNP
JAK2	3717	hgsc.bcm.edu	hg19	9	5069060	5069060	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	JAK2	NM_004972	exon11	c.A1365G	p.T455T	GATTACAAAAAAT	.	169.0	30.0	169.0	0.0	.	35466	.	.	Atlas-SNP
PTPRD	5789	hgsc.bcm.edu	hg19	9	8404601	8404601	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PTPRD	NM_002839	exon36	c.A4146T	p.P1382P	ATTCTTTGGTTTG	.	81.0	18.0	114.0	0.0	.	1348	.	.	Atlas-SNP
IFNA16	3449	hgsc.bcm.edu	hg19	9	21217203	21217203	+	Silent	SNP	A	A	G	rs372911133		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	IFNA16	NM_002173	exon1	c.T102C	p.N34N	CCTCCTATTACCC	.	195.0	40.0	209.0	0.0	.	27	.	.	Atlas-SNP
KIF24	347240	hgsc.bcm.edu	hg19	9	34311028	34311028	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	KIF24	NM_194313	exon2	c.A317T	p.N106I	TCTTTATTGTCAG	.	121.0	23.0	123.0	0.0	.	64	.	.	Atlas-SNP
KIAA1045	23349	hgsc.bcm.edu	hg19	9	34977626	34977626	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	KIAA1045	NM_015297	exon7	c.A1094T	p.E365V	CCACAGAGCAGGA	.	177.0	33.0	166.0	0.0	.	60	.	.	Atlas-SNP
C9orf131	138724	hgsc.bcm.edu	hg19	9	35043491	35043491	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	C9orf131	NM_203299	exon2	c.A865T	p.R289W	CATCTGAGGCCCT	.	98.0	22.0	91.0	0.0	.	71	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79320733	79320733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PRUNE2	NM_015225	exon8	c.T6457C	p.F2153L	GGACAAACTCCCG	.	42.0	11.0	67.0	0.0	.	331	.	.	Atlas-SNP
WNK2	65268	hgsc.bcm.edu	hg19	9	95992093	95992093	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	WNK2	NM_006648	exon2	c.A797T	p.K266M	GCGCCAAGGGCAA	.	64.0	11.0	64.0	0.0	.	277	.	.	Atlas-SNP
OR13C5	138799	hgsc.bcm.edu	hg19	9	107360745	107360745	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	OR13C5	NM_001004482	exon1	c.A950T	p.N317I	TACTTGTTAAAAT	.	61.0	12.0	58.0	0.0	.	60	.	.	Atlas-SNP
C5	727	hgsc.bcm.edu	hg19	9	123789473	123789473	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	C5	NM_001735	exon8	c.A838T	p.K280X	TTTCTTTTTGATC	.	39.0	6.0	42.0	0.0	.	124	.	.	Atlas-SNP
OR1N2	138882	hgsc.bcm.edu	hg19	9	125316382	125316382	+	Silent	SNP	A	A	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	OR1N2	NM_001004457	exon1	c.A934C	p.R312R	AGGAACAGAGACA	.	59.0	5.0	61.0	0.0	.	51	.	.	Atlas-SNP
NR5A1	2516	hgsc.bcm.edu	hg19	9	127262932	127262932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	NR5A1	NM_004959	exon4	c.C307T	p.R103W	GGGCCCGGTCCCG	.	74.0	14.0	70.0	0.0	.	32	.	.	Atlas-SNP
NUP214	8021	hgsc.bcm.edu	hg19	9	134026017	134026017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	NUP214,bladder,carcinoma,0,1	NUP214	NM_005085	exon16	c.G2142T	p.Q714H	CTTTCAGAAGGAG	.	137.0	18.0	126.0	0.0	.	166	.	.	Atlas-SNP
WDR5	11091	hgsc.bcm.edu	hg19	9	137023062	137023062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	WDR5	NM_052821	exon13	c.T952C	p.S318P	ATCGCCTCTGCTG	.	89.0	18.0	101.0	0.0	.	29	.	.	Atlas-SNP
INPP5E	56623	hgsc.bcm.edu	hg19	9	139324161	139324161	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	INPP5E	NM_019892	exon10	c.G1901C	p.S634T	TTCTGACTCTGTA	.	69.0	7.0	76.0	0.0	.	18	.	.	Atlas-SNP
NEBL	10529	hgsc.bcm.edu	hg19	10	21169807	21169807	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	NEBL	NM_006393	exon5	c.T396A	p.A132A	TTTGGCAGCATCA	.	70.0	11.0	78.0	0.0	.	199	.	.	Atlas-SNP
FAM13C	220965	hgsc.bcm.edu	hg19	10	61043201	61043201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	FAM13C	NM_198215	exon6	c.G514A	p.A172T	GAGCAGCTTCTTC	.	65.0	9.0	50.0	0.0	.	124	.	.	Atlas-SNP
FAM13C	220965	hgsc.bcm.edu	hg19	10	61112104	61112104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	FAM13C	NM_198215	exon3	c.A250G	p.M84V	TGCCCATGCTGGG	.	69.0	20.0	57.0	0.0	.	124	.	.	Atlas-SNP
PTEN	5728	hgsc.bcm.edu	hg19	10	89720791	89720791	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	PTEN,NS,other,+2,2	PTEN	NM_000314	exon8	c.A942G	p.E314E	CAAGGAATATCTA	.	313.0	50.0	389.0	0.0	.	3652	.	.	Atlas-SNP
IFIT2	3433	hgsc.bcm.edu	hg19	10	91066479	91066479	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	IFIT2	NM_001547	exon2	c.T766A	p.F256I	GCCAAGTTTTATC	.	187.0	20.0	118.0	0.0	.	39	.	.	Atlas-SNP
SFRP5	6425	hgsc.bcm.edu	hg19	10	99527306	99527306	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SFRP5	NM_003015	exon3	c.T919A	p.Y307N	AAGGGTAGTAGAG	.	99.0	27.0	104.0	0.0	.	32	.	.	Atlas-SNP
SORCS3	22986	hgsc.bcm.edu	hg19	10	106865232	106865232	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SORCS3	NM_014978	exon7	c.A1171C	p.I391L	ATTGACATCAGTT	.	75.0	16.0	94.0	0.0	.	282	.	.	Atlas-SNP
FAM160B1	57700	hgsc.bcm.edu	hg19	10	116608453	116608453	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	FAM160B1	NM_020940	exon13	c.A1760G	p.E587G	ATGTTGAGGGCAC	.	92.0	15.0	64.0	0.0	.	107	.	.	Atlas-SNP
C10orf90	118611	hgsc.bcm.edu	hg19	10	128150126	128150126	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	C10orf90	NM_001004298	exon5	c.A1563T	p.V521V	TATTTTTACAACC	.	80.0	7.0	103.0	0.0	.	121	.	.	Atlas-SNP
C10orf90	118611	hgsc.bcm.edu	hg19	10	128193605	128193605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	C10orf90	NM_001004298	exon3	c.C164T	p.S55F	ATCTGGGAGATGA	.	71.0	17.0	59.0	0.0	.	121	.	.	Atlas-SNP
CD151	977	hgsc.bcm.edu	hg19	11	836089	836089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CD151	NM_139030	exon2	c.A20G	p.K7R	ACGAGAAGAAGAC	.	99.0	16.0	97.0	0.0	.	7	.	.	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	hg19	11	1030299	1030299	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MUC6	NM_005961	exon8	c.A929T	p.E310V	CCGCACTCCTGGT	.	121.0	20.0	136.0	0.0	.	408	.	.	Atlas-SNP
TSSC4	10078	hgsc.bcm.edu	hg19	11	2424234	2424234	+	Missense_Mutation	SNP	G	G	T	rs1008265	bycluster;byfrequency;by2hit2allele;by1000genomes;alternate_allele	TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TSSC4	NM_005706	exon2	c.G371T	p.R124L	TCAAGCGGCCCCT	.	135.0	22.0	156.0	0.0	.	19	.	G|0.988;A|0.012	Atlas-SNP
OR56B1	387748	hgsc.bcm.edu	hg19	11	5757966	5757966	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	OR56B1	NM_001005180	exon1	c.A220T	p.I74F	CTTGGCATCCTCT	.	98.0	19.0	117.0	0.0	.	38	.	.	Atlas-SNP
USP47	55031	hgsc.bcm.edu	hg19	11	11944273	11944273	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	USP47	NM_017944	exon10	c.A1017G	p.K339K	TAAGAAATCTCCT	.	109.0	18.0	126.0	0.0	.	91	.	.	Atlas-SNP
LUZP2	338645	hgsc.bcm.edu	hg19	11	24936037	24936037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	LUZP2	NM_001009909	exon7	c.G475T	p.A159S	ATCCAAGCCCAGC	.	322.0	39.0	286.0	0.0	.	90	.	.	Atlas-SNP
LUZP2	338645	hgsc.bcm.edu	hg19	11	24936045	24936045	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	LUZP2	NM_001009909	exon7	c.G483A	p.L161L	CCAGCTGAAGGAG	.	325.0	41.0	280.0	0.0	.	90	.	.	Atlas-SNP
WT1	7490	hgsc.bcm.edu	hg19	11	32413561	32413561	+	Silent	SNP	G	G	T	rs374799820	alternate_allele	TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	WT1	NM_024424	exon9	c.C1389A	p.S463S	GTGGTCGGACCGG	.	129.0	24.0	109.0	0.0	.	744	.	.	Atlas-SNP
PTPRJ	5795	hgsc.bcm.edu	hg19	11	48188835	48188835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PTPRJ	NM_002843	exon25	c.A3935G	p.Q1312R	TCTACCAGAACAC	.	96.0	19.0	116.0	0.0	.	225	.	.	Atlas-SNP
TRIM49B	283116	hgsc.bcm.edu	hg19	11	49059297	49059297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TRIM49B	NM_001206626	exon6	c.G1127T	p.G376V	AGGATGGACTCTT	.	119.0	36.0	125.0	0.0	.	27	.	.	Atlas-SNP
OR5B21	219968	hgsc.bcm.edu	hg19	11	58275100	58275100	+	Missense_Mutation	SNP	C	C	T	rs376076638		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	OR5B21	NM_001005218	exon1	c.G479A	p.G160D	AAGGTGCCTGCTG	.	102.0	6.0	88.0	0.0	.	59	.	.	Atlas-SNP
PLAC1L	219990	hgsc.bcm.edu	hg19	11	59814496	59814496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PLAC1L	NM_173801	exon4	c.A427G	p.T143A	TTTCAGACAACAG	.	123.0	47.0	113.0	0.0	.	36	.	.	Atlas-SNP
MS4A12	54860	hgsc.bcm.edu	hg19	11	60264908	60264908	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MS4A12	NM_017716	exon2	c.A117T	p.L39F	CAACTTAGAAAAC	.	166.0	12.0	188.0	0.0	.	44	.	.	Atlas-SNP
STX5	6811	hgsc.bcm.edu	hg19	11	62594819	62594819	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	STX5	NM_003164	exon4	c.A348G	p.T116T	ACAGATTGTCAGC	.	111.0	12.0	102.0	0.0	.	42	.	.	Atlas-SNP
SLC3A2	6520	hgsc.bcm.edu	hg19	11	62648792	62648792	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SLC3A2	NM_001012662	exon4	c.C603A	p.A201A	TGGTGCCGTGGTC	.	71.0	17.0	79.0	0.0	.	55	.	.	Atlas-SNP
NPAS4	266743	hgsc.bcm.edu	hg19	11	66189687	66189687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	NPAS4	NM_178864	exon2	c.A272G	p.E91G	CAGCCGAGGGGAA	.	60.0	10.0	72.0	0.0	.	133	.	.	Atlas-SNP
B3GNT6	192134	hgsc.bcm.edu	hg19	11	76751320	76751320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	B3GNT6	NM_138706	exon2	c.G725A	p.G242D	CACCCGGCCGCCA	.	29.0	10.0	33.0	0.0	.	27	.	.	Atlas-SNP
GRM5	2915	hgsc.bcm.edu	hg19	11	88780420	88780420	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	GRM5	NM_000842	exon2	c.G621T	p.K207N	GTACCTCTTCACT	.	113.0	15.0	120.0	0.0	.	414	.	.	Atlas-SNP
ARHGAP20	57569	hgsc.bcm.edu	hg19	11	110451149	110451149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ARHGAP20	NM_020809	exon16	c.A2521G	p.T841A	GATGTGTCCTTGG	.	102.0	26.0	126.0	0.0	.	150	.	.	Atlas-SNP
MLL	4297	hgsc.bcm.edu	hg19	11	118359362	118359362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MLL	NM_001197104	exon11	c.C4366T	p.H1456Y	CCCTTCCACAAGT	.	83.0	18.0	124.0	0.0	.	548	.	.	Atlas-SNP
NTM	50863	hgsc.bcm.edu	hg19	11	132081914	132081914	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	NTM_ENST00000374791,NS,carcinoma,0,2	NTM	NM_001048209	exon4	c.401-2A>T	.	TTCCACAGTATCT	.	70.0	22.0	82.0	0.0	.	253	.	.	Atlas-SNP
B4GALNT3	283358	hgsc.bcm.edu	hg19	12	667798	667798	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	B4GALNT3	NM_173593	exon18	c.A2732T	p.H911L	GGCTGCATTGTGG	.	132.0	31.0	87.0	0.0	.	64	.	.	Atlas-SNP
EPS8	2059	hgsc.bcm.edu	hg19	12	15777209	15777209	+	Missense_Mutation	SNP	G	G	T	rs150904526	bycluster;byfrequency;alternate_allele	TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	EPS8	NM_004447	exon19	c.C2177A	p.T726K	TCTGGTGTGGAGT	.	210.0	66.0	147.0	0.0	.	70	.	G|0.999;A|0.001	Atlas-SNP
PIK3C2G	5288	hgsc.bcm.edu	hg19	12	18435472	18435472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PIK3C2G	NM_004570	exon2	c.A457G	p.K153E	TTGGATAAAATTA	.	101.0	15.0	69.0	0.0	.	315	.	.	Atlas-SNP
GYS2	2998	hgsc.bcm.edu	hg19	12	21695505	21695505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	GYS2	NM_021957	exon13	c.A1570G	p.I524V	TGGGGATACCCAT	.	313.0	58.0	282.0	0.0	.	110	.	.	Atlas-SNP
PPHLN1	51535	hgsc.bcm.edu	hg19	12	42835193	42835193	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PPHLN1	NM_201515	exon11	c.C1007G	p.S336C	AAAAGTCTATACA	.	110.0	11.0	76.0	0.0	.	101	.	.	Atlas-SNP
KRT76	51350	hgsc.bcm.edu	hg19	12	53163335	53163335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	KRT76	NM_015848	exon8	c.T1517C	p.I506T	TTACAAATGCACA	.	95.0	13.0	66.0	0.0	.	72	.	.	Atlas-SNP
KRT18	3875	hgsc.bcm.edu	hg19	12	53343284	53343284	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	KRT18	NM_000224	exon1	c.G327A	p.E109E	GCTGGAGAGCAAA	.	106.0	14.0	81.0	0.0	.	31	.	.	Atlas-SNP
CAND1	55832	hgsc.bcm.edu	hg19	12	67692842	67692842	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CAND1	NM_018448	exon7	c.A967G	p.M323V	AATGCAATGGATG	.	50.0	11.0	36.0	0.0	.	100	.	.	Atlas-SNP
ZFC3H1	196441	hgsc.bcm.edu	hg19	12	72037930	72037930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ZFC3H1	NM_144982	exon5	c.A1448G	p.E483G	TACTGTTCTTCCT	.	121.0	15.0	122.0	0.0	.	172	.	.	Atlas-SNP
E2F7	144455	hgsc.bcm.edu	hg19	12	77426865	77426865	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	E2F7	NM_203394	exon9	c.A1347T	p.A449A	GACAGCTGCCAGG	.	77.0	14.0	73.0	0.0	.	201	.	.	Atlas-SNP
ACSS3	79611	hgsc.bcm.edu	hg19	12	81647343	81647343	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ACSS3	NM_024560	exon15	c.T1889A	p.V630E	GCCCTGTGGCTGC	.	191.0	33.0	188.0	0.0	.	118	.	.	Atlas-SNP
TMTC2	160335	hgsc.bcm.edu	hg19	12	83251361	83251361	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TMTC2	NM_152588	exon2	c.654+2T>A	.	ACAAAGTAAGTGA	.	94.0	14.0	82.0	0.0	.	100	.	.	Atlas-SNP
TMTC3	160418	hgsc.bcm.edu	hg19	12	88542128	88542128	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TMTC3	NM_181783	exon2	c.A36T	p.I12I	CTTAATAGTAGGT	.	212.0	41.0	145.0	0.0	.	75	.	.	Atlas-SNP
ATP2B1	490	hgsc.bcm.edu	hg19	12	90020267	90020267	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ATP2B1	NM_001001323	exon7	c.A1093T	p.K365X	TAAGTTTCCCTTG	.	65.0	9.0	64.0	0.0	.	191	.	.	Atlas-SNP
ANKS1B	56899	hgsc.bcm.edu	hg19	12	99898358	99898358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ANKS1B	NM_152788	exon10	c.C1334A	p.T445K	GGAAATGTATCCA	.	118.0	16.0	64.0	0.0	.	180	.	.	Atlas-SNP
RFX4	5992	hgsc.bcm.edu	hg19	12	107075779	107075779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	RFX4	NM_001206691	exon5	c.G351T	p.R117S	CATAAGGCAGCAG	.	99.0	15.0	89.0	0.0	.	218	.	.	Atlas-SNP
TBX5	6910	hgsc.bcm.edu	hg19	12	114793650	114793650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TBX5	NM_000192	exon9	c.T1244C	p.V415A	GGCTGCACGGTGG	.	73.0	15.0	60.0	0.0	.	188	.	.	Atlas-SNP
PITPNM2	57605	hgsc.bcm.edu	hg19	12	123472882	123472882	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PITPNM2	NM_020845	exon19	c.A2896T	p.N966Y	TGGAGTTGTCATG	.	55.0	13.0	42.0	0.0	.	105	.	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	hg19	12	124335527	124335527	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	DNAH10	NM_207437	exon34	c.G5841A	p.S1947S	CGAGTCGGTGAAG	.	108.0	19.0	101.0	0.0	.	888	.	.	Atlas-SNP
TMEM132B	114795	hgsc.bcm.edu	hg19	12	126139052	126139052	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TMEM132B	NM_052907	exon9	c.T3033C	p.N1011N	TAAAAATGAACCT	.	90.0	13.0	88.0	0.0	.	207	.	.	Atlas-SNP
TMEM132D	121256	hgsc.bcm.edu	hg19	12	129558522	129558522	+	Silent	SNP	C	C	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	TMEM132D,colon,carcinoma,0,1	TMEM132D	NM_133448	exon9	c.G3198C	p.V1066V	ACTCATCACGATG	.	159.0	51.0	128.0	1.0	.	299	.	.	Atlas-SNP
AMER2	219287	hgsc.bcm.edu	hg19	13	25745258	25745258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	.	NM_152704	exon1	c.T500C	p.L167P	TTCTTCAGCAGCG	.	73.0	9.0	83.0	0.0	.	.	.	.	Atlas-SNP
ALG5	29880	hgsc.bcm.edu	hg19	13	37563694	37563694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ALG5	NM_013338	exon5	c.A374G	p.Q125R	TATTTCTGGCAAT	.	79.0	15.0	89.0	0.0	.	28	.	.	Atlas-SNP
OR4K15	81127	hgsc.bcm.edu	hg19	14	20443792	20443792	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	OR4K15	NM_001005486	exon1	c.C115A	p.L39M	GTGTTGCTGGGAC	.	52.0	9.0	49.0	0.0	.	82	.	.	Atlas-SNP
MYH7	4625	hgsc.bcm.edu	hg19	14	23885305	23885305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MYH7	NM_000257	exon34	c.G4861T	p.D1621Y	TGAGGTCTCCTTC	.	76.0	10.0	85.0	0.0	.	349	.	.	Atlas-SNP
FAM179B	23116	hgsc.bcm.edu	hg19	14	45473485	45473485	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	FAM179B	NM_015091	exon4	c.A2560T	p.K854X	CCTCTTAAAAGCT	.	134.0	24.0	132.0	0.0	.	115	.	.	Atlas-SNP
NID2	22795	hgsc.bcm.edu	hg19	14	52486849	52486849	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	NID2	NM_007361	exon13	c.T2722A	p.Y908N	TATTGTAGCAGGT	.	123.0	23.0	106.0	0.0	.	201	.	.	Atlas-SNP
C14orf39	317761	hgsc.bcm.edu	hg19	14	60923752	60923752	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	C14orf39	NM_174978	exon15	c.G1241C	p.R414T	TCAGCTCTCTCTT	.	182.0	30.0	192.0	0.0	.	79	.	.	Atlas-SNP
RHOJ	57381	hgsc.bcm.edu	hg19	14	63757723	63757723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	RHOJ	NM_020663	exon5	c.G626A	p.S209N	GTCACAGCTGCTG	.	84.0	19.0	70.0	0.0	.	45	.	.	Atlas-SNP
GPHN	10243	hgsc.bcm.edu	hg19	14	67589018	67589018	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	GPHN	NM_020806	exon17	c.A1672T	p.S558C	CGAGACAGCAATC	.	170.0	33.0	142.0	0.0	.	79	.	.	Atlas-SNP
ZFYVE26	23503	hgsc.bcm.edu	hg19	14	68264872	68264872	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ZFYVE26	NM_015346	exon11	c.A2107T	p.S703C	GAGGGCTGCGGCT	.	68.0	9.0	65.0	0.0	.	223	.	.	Atlas-SNP
LTBP2	4053	hgsc.bcm.edu	hg19	14	75018988	75018988	+	Missense_Mutation	SNP	G	G	A	rs371940681		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	LTBP2	NM_000428	exon6	c.C1301T	p.P434L	CTGTCCGGCTGCG	.	102.0	25.0	146.0	0.0	.	158	.	.	Atlas-SNP
KCNK13	56659	hgsc.bcm.edu	hg19	14	90650745	90650745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	KCNK13	NM_022054	exon2	c.T625C	p.S209P	CTCATCTCTTGCT	.	78.0	22.0	109.0	0.0	.	76	.	.	Atlas-SNP
DICER1	23405	hgsc.bcm.edu	hg19	14	95577654	95577654	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	DICER1	NM_030621	exon15	c.A2256T	p.A752A	ACTAACTGCTTTT	.	72.0	9.0	103.0	0.0	.	181	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105414392	105414392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	AHNAK2	NM_138420	exon7	c.G7396A	p.E2466K	CCCCCTCCAGCCA	.	98.0	21.0	137.0	0.0	.	719	.	.	Atlas-SNP
ATP10A	57194	hgsc.bcm.edu	hg19	15	25971123	25971123	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ATP10A	NM_024490	exon5	c.T954C	p.V318V	CATGCAAACAAGG	.	44.0	13.0	55.0	0.0	.	270	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	34072456	34072456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	RYR3	NM_001243996	exon65	c.C9182T	p.A3061V	CAGCTGCCATACC	.	99.0	14.0	129.0	0.0	.	760	.	.	Atlas-SNP
AQR	9716	hgsc.bcm.edu	hg19	15	35253000	35253000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	AQR	NM_014691	exon3	c.T148C	p.Y50H	TTTCATATATATC	.	195.0	39.0	164.0	0.0	.	139	.	.	Atlas-SNP
SEMA6D	80031	hgsc.bcm.edu	hg19	15	48062884	48062884	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SEMA6D	NM_153618	exon19	c.A2124G	p.T708T	ATGCACAGACTCC	.	95.0	30.0	114.0	0.0	.	322	.	.	Atlas-SNP
LEO1	123169	hgsc.bcm.edu	hg19	15	52244087	52244087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	LEO1	NM_138792	exon9	c.C1565T	p.P522L	GCCATTGGCAAGA	.	62.0	10.0	62.0	0.0	.	46	.	.	Atlas-SNP
RNF111	54778	hgsc.bcm.edu	hg19	15	59350608	59350608	+	Missense_Mutation	SNP	G	G	C	rs201513331	by1000genomes;alternate_allele	TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	RNF111	NM_017610	exon5	c.G1225C	p.A409P	ACTAGCGCTTCCA	.	78.0	8.0	80.0	0.0	.	179	.	G|1.000;A|0.000	Atlas-SNP
C15orf60	283677	hgsc.bcm.edu	hg19	15	73843382	73843382	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	C15orf60	NM_001042367	exon4	c.T437C	p.V146A	TAACCGTGCAGGT	.	180.0	42.0	193.0	0.0	.	26	.	.	Atlas-SNP
CLK3	1198	hgsc.bcm.edu	hg19	15	74914530	74914530	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	CLK3_ENST00000454830,colon,carcinoma,0,2	CLK3	NM_001130028	exon4	c.C883A	p.R295R	GTGTGCCGGATCG	.	113.0	39.0	108.0	0.0	.	78	.	.	Atlas-SNP
IREB2	3658	hgsc.bcm.edu	hg19	15	78765662	78765662	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	IREB2	NM_004136	exon8	c.A962T	p.E321V	GATGTGAGTTAAC	.	138.0	24.0	141.0	0.0	.	106	.	.	Atlas-SNP
UNC45A	55898	hgsc.bcm.edu	hg19	15	91483701	91483701	+	Missense_Mutation	SNP	C	C	T	rs144625807		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	UNC45A	NM_018671	exon6	c.C685T	p.R229W	CAGTCACGGGTAG	.	84.0	4.0	71.0	0.0	.	57	.	C|1.000;T|0.000	Atlas-SNP
ALDH1A3	220	hgsc.bcm.edu	hg19	15	101420114	101420114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ALDH1A3	NM_000693	exon1	c.T2C	p.M1T	GAGCCATGGCCAC	.	97.0	19.0	90.0	0.0	.	61	.	.	Atlas-SNP
RHBDF1	64285	hgsc.bcm.edu	hg19	16	111826	111826	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	RHBDF1	NM_022450	exon8	c.A1178T	p.K393M	TGGCGCTTGACGA	.	68.0	7.0	48.0	0.0	.	54	.	.	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	hg19	16	1261288	1261288	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CACNA1H	NM_021098	exon22	c.T4344A	p.G1448G	TTTGGGTGTGCAG	.	92.0	12.0	83.0	0.0	.	317	.	.	Atlas-SNP
CLCN7	1186	hgsc.bcm.edu	hg19	16	1496643	1496643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CLCN7	NM_001287	exon25	c.G2407A	p.A803T	TCTGGGCCAGCGA	.	156.0	23.0	167.0	0.0	.	53	.	.	Atlas-SNP
ABCA3	21	hgsc.bcm.edu	hg19	16	2348419	2348419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ABCA3	NM_001089	exon15	c.A1864G	p.T622A	CGACTGTCAAGTT	.	185.0	25.0	146.0	0.0	.	176	.	.	Atlas-SNP
ADCY9	115	hgsc.bcm.edu	hg19	16	4015970	4015970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ADCY9	NM_001116	exon11	c.A3868G	p.K1290E	ATGTCTTGTCCAC	.	121.0	21.0	86.0	0.0	.	151	.	.	Atlas-SNP
CORO7	79585	hgsc.bcm.edu	hg19	16	4405166	4405166	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CORO7	NM_001201473	exon27	c.2518-2A>T	.	TAGTCCTGGGGCG	.	159.0	23.0	152.0	0.0	.	73	.	.	Atlas-SNP
CIITA	4261	hgsc.bcm.edu	hg19	16	11001808	11001808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CIITA	NM_000246	exon11	c.G2459T	p.G820V	AGGCTGGAATTTG	.	86.0	12.0	85.0	0.0	.	92	.	.	Atlas-SNP
RSL1D1	26156	hgsc.bcm.edu	hg19	16	11933580	11933580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	RSL1D1	NM_015659	exon8	c.A1118G	p.K373R	GTCTTCTTTCCTA	.	85.0	10.0	79.0	0.0	.	40	.	.	Atlas-SNP
USP31	57478	hgsc.bcm.edu	hg19	16	23083412	23083412	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	USP31	NM_020718	exon15	c.G2442T	p.S814S	AGAGAGCGACGCC	.	64.0	21.0	56.0	0.0	.	122	.	.	Atlas-SNP
LAT	27040	hgsc.bcm.edu	hg19	16	28996206	28996206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	LAT	NM_001014989	exon1	c.G24T	p.W8C	CAGCTGGCAGGTG	.	138.0	19.0	124.0	0.0	.	22	.	.	Atlas-SNP
ITGAX	3687	hgsc.bcm.edu	hg19	16	31374277	31374277	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ITGAX	NM_000887	exon13	c.T1381A	p.S461T	GGGGCCTCCCTCT	.	184.0	38.0	174.0	0.0	.	198	.	.	Atlas-SNP
CES2	8824	hgsc.bcm.edu	hg19	16	66969499	66969499	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CES2	NM_003869	exon1	c.G153T	p.Q51H	ACAGCAGCGTGTC	.	55.0	15.0	95.0	0.0	.	43	.	.	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	hg19	16	72830306	72830306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ZFHX3	NM_006885	exon9	c.T6275C	p.M2092T	AGCTCCATCGGCA	.	36.0	11.0	48.0	0.0	.	404	.	.	Atlas-SNP
FAM57A	79850	hgsc.bcm.edu	hg19	17	644672	644672	+	Silent	SNP	C	C	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	FAM57A	NM_024792	exon5	c.C636G	p.L212L	CCTGCTCCAAGTA	.	79.0	8.0	76.0	0.0	.	17	.	.	Atlas-SNP
ALOX15B	247	hgsc.bcm.edu	hg19	17	7946179	7946179	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ALOX15B	NM_001141	exon5	c.A653T	p.N218I	TCTTCAACTTCCG	.	108.0	21.0	102.0	0.0	.	66	.	.	Atlas-SNP
NTN1	9423	hgsc.bcm.edu	hg19	17	8926031	8926031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	NTN1	NM_004822	exon2	c.C341T	p.P114L	ACAACCCGCACAA	.	117.0	15.0	104.0	0.0	.	31	.	.	Atlas-SNP
MYH4	4622	hgsc.bcm.edu	hg19	17	10350413	10350413	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MYH4	NM_017533	exon35	c.C5086G	p.L1696V	GTTCCAGGGATGC	.	90.0	4.0	70.0	0.0	.	349	.	.	Atlas-SNP
MPRIP	23164	hgsc.bcm.edu	hg19	17	17075128	17075128	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MPRIP	NM_015134	exon16	c.C2260T	p.R754X	AAACTTCGAGAAG	.	286.0	54.0	266.0	0.0	.	87	.	.	Atlas-SNP
AKAP10	11216	hgsc.bcm.edu	hg19	17	19844215	19844215	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	AKAP10	NM_007202	exon7	c.C1170T	p.L390L	ATAAAAGAGGGCT	.	370.0	33.0	298.0	0.0	.	47	.	.	Atlas-SNP
EFCAB5	374786	hgsc.bcm.edu	hg19	17	28296107	28296107	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	EFCAB5	NM_198529	exon4	c.T489A	p.T163T	TAATACTGACAGC	.	253.0	32.0	221.0	0.0	.	122	.	.	Atlas-SNP
LHX1	3975	hgsc.bcm.edu	hg19	17	35297689	35297689	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	LHX1	NM_005568	exon2	c.C273T	p.C91C	CACCTGCATGATG	.	113.0	17.0	89.0	0.0	.	48	.	.	Atlas-SNP
ACACA	31	hgsc.bcm.edu	hg19	17	35614734	35614734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ACACA	NM_198834	exon14	c.A1717G	p.N573D	AAACATTCTTATT	.	80.0	9.0	90.0	0.0	.	395	.	.	Atlas-SNP
C17orf96	100170841	hgsc.bcm.edu	hg19	17	36829800	36829800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	.	NM_001130677	exon1	c.A949G	p.N317D	AGCAGTTGAGGAG	.	38.0	14.0	30.0	0.0	.	.	.	.	Atlas-SNP
KRTAP17-1	83902	hgsc.bcm.edu	hg19	17	39471826	39471826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	KRTAP17-1	NM_031964	exon1	c.C77T	p.P26L	CAGCCCGGCTGAC	.	86.0	10.0	80.0	0.0	.	14	.	.	Atlas-SNP
SGCA	6442	hgsc.bcm.edu	hg19	17	48245087	48245087	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SGCA	NM_001135697	exon3	c.A302T	p.Q101L	GGCTCCAGGTCAT	.	90.0	18.0	94.0	0.0	.	35	.	.	Atlas-SNP
MBTD1	54799	hgsc.bcm.edu	hg19	17	49302381	49302381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MBTD1	NM_017643	exon3	c.A142G	p.K48E	CAGATTTACCATC	.	91.0	15.0	72.0	0.0	.	44	.	.	Atlas-SNP
DGKE	8526	hgsc.bcm.edu	hg19	17	54939189	54939189	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	DGKE	NM_003647	exon10	c.T1322A	p.L441X	CCAGCTTGGAAGG	.	77.0	7.0	91.0	0.0	.	47	.	.	Atlas-SNP
BZRAP1	9256	hgsc.bcm.edu	hg19	17	56382773	56382773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	BZRAP1	NM_004758	exon29	c.G5408T	p.G1803V	TCCATGCCCCCAA	.	147.0	16.0	162.0	0.0	.	287	.	.	Atlas-SNP
TANC2	26115	hgsc.bcm.edu	hg19	17	61278235	61278235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TANC2	NM_025185	exon5	c.C464A	p.T155K	TCAGTACAAATGC	.	236.0	40.0	218.0	0.0	.	266	.	.	Atlas-SNP
CYB561	1534	hgsc.bcm.edu	hg19	17	61513081	61513081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CYB561	NM_001915	exon4	c.G373A	p.G125R	GGATCCCGCACCA	.	137.0	16.0	135.0	0.0	.	15	.	.	Atlas-SNP
CEP95	90799	hgsc.bcm.edu	hg19	17	62533182	62533182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CEP95	NM_138363	exon19	c.A2241G	p.I747M	AGCCATATCACAG	.	425.0	109.0	386.0	0.0	.	103	.	.	Atlas-SNP
PRKAR1A	5573	hgsc.bcm.edu	hg19	17	66521090	66521090	+	Silent	SNP	A	A	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PRKAR1A	NM_001276290	exon5	c.A540C	p.G180G	TCAAGGAGAGACG	.	96.0	22.0	64.0	0.0	.	48	.	.	Atlas-SNP
CD300LF	146722	hgsc.bcm.edu	hg19	17	72694567	72694567	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CD300LF	NM_139018	exon4	c.T500A	p.L167Q	AGCAGCAGCAATA	.	92.0	14.0	87.0	0.0	.	55	.	.	Atlas-SNP
UBALD2	283991	hgsc.bcm.edu	hg19	17	74266433	74266433	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	.	NM_182565	exon3	c.C342T	p.A114A	CTGGGCCTCGTCC	.	88.0	16.0	56.0	0.0	.	.	.	.	Atlas-SNP
CYTH1	9267	hgsc.bcm.edu	hg19	17	76778291	76778291	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CYTH1	NM_017456	exon1	c.C15G	p.D5E	GTAGCTGTCGTCC	.	67.0	6.0	50.0	0.0	.	36	.	.	Atlas-SNP
AATK	9625	hgsc.bcm.edu	hg19	17	79095855	79095855	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	AATK	NM_001080395	exon11	c.A1881T	p.A627A	CCAGTCTGCATCC	.	75.0	9.0	64.0	0.0	.	102	.	.	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	hg19	18	7013922	7013922	+	Silent	SNP	G	G	A	rs375804587		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	LAMA1,NS,carcinoma,0,1	LAMA1	NM_005559	exon23	c.C3255T	p.P1085P	ACAGTCGGGAAAG	.	103.0	20.0	156.0	0.0	.	458	.	.	Atlas-SNP
DSG4	147409	hgsc.bcm.edu	hg19	18	28979346	28979346	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	DSG4	NM_001134453	exon9	c.A1117T	p.R373X	CCTGTGAGAATTC	.	110.0	23.0	152.0	0.0	.	343	.	.	Atlas-SNP
CDC34	997	hgsc.bcm.edu	hg19	19	541500	541500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CDC34	NM_004359	exon5	c.C659T	p.A220V	AGGAGGCCGACAG	.	115.0	12.0	101.0	0.0	.	5	.	.	Atlas-SNP
GRIN3B	116444	hgsc.bcm.edu	hg19	19	1003596	1003596	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	GRIN3B	NM_138690	exon2	c.A894T	p.Q298H	TGTGCAACTGGTG	.	112.0	9.0	100.0	0.0	.	46	.	.	Atlas-SNP
KLF16	83855	hgsc.bcm.edu	hg19	19	1854493	1854493	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	KLF16	NM_031918	exon2	c.A724T	p.S242C	CGGGGCTGGGCGC	.	67.0	24.0	52.0	0.0	.	9	.	.	Atlas-SNP
CREB3L3	84699	hgsc.bcm.edu	hg19	19	4171378	4171378	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CREB3L3	NM_001271995	exon9	c.973-2A>G	.	TCCACCAGGTCCT	.	70.0	29.0	73.0	0.0	.	53	.	.	Atlas-SNP
CREB3L3	84699	hgsc.bcm.edu	hg19	19	4171711	4171711	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CREB3L3	NM_032607	exon10	c.A1131T	p.P377P	TGTGCCAGGCTCC	.	171.0	11.0	184.0	0.0	.	53	.	.	Atlas-SNP
TNFSF14	8740	hgsc.bcm.edu	hg19	19	6670072	6670072	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TNFSF14	NM_003807	exon2	c.G9C	p.E3D	GACACTCTCCTCC	.	58.0	4.0	48.0	0.0	.	40	.	.	Atlas-SNP
KANK3	256949	hgsc.bcm.edu	hg19	19	8387768	8387768	+	Silent	SNP	A	A	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	KANK3	NM_198471	exon11	c.T2421G	p.G807G	TCCTTCACCAGGT	.	58.0	8.0	41.0	0.0	.	35	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	8966763	8966763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MUC16	NM_024690	exon81	c.C43190T	p.P14397L	GCCAGTGGCGAGA	.	102.0	15.0	97.0	0.0	.	4315	.	.	Atlas-SNP
ZNF491	126069	hgsc.bcm.edu	hg19	19	11917800	11917800	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ZNF491	NM_152356	exon3	c.A1032T	p.I344I	TCGAATACATGGA	.	89.0	28.0	91.0	0.0	.	61	.	.	Atlas-SNP
ZNF709	163051	hgsc.bcm.edu	hg19	19	12575440	12575440	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ZNF709	NM_152601	exon4	c.C1296A	p.S432S	AGAACTGGAACAA	.	101.0	16.0	96.0	0.0	.	80	.	.	Atlas-SNP
CCDC130	81576	hgsc.bcm.edu	hg19	19	13873731	13873731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CCDC130	NM_030818	exon10	c.G1040A	p.S347N	AGTGCAGCAGCCC	.	155.0	58.0	161.0	0.0	.	25	.	.	Atlas-SNP
UPF1	5976	hgsc.bcm.edu	hg19	19	18961531	18961531	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	UPF1	NM_002911	exon5	c.A664T	p.I222F	AAGGACATCAACT	.	105.0	7.0	105.0	0.0	.	88	.	.	Atlas-SNP
ETHE1	23474	hgsc.bcm.edu	hg19	19	44012166	44012166	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ETHE1	NM_014297	exon6	c.G642A	p.R214R	GGTGAGCCGAGGG	.	75.0	8.0	62.0	0.0	.	7	.	.	Atlas-SNP
ZNF221	7638	hgsc.bcm.edu	hg19	19	44469460	44469460	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ZNF221	NM_013359	exon5	c.A284T	p.Q95L	CAAGCCAAAGAGA	.	183.0	19.0	198.0	0.0	.	59	.	.	Atlas-SNP
CCDC114	93233	hgsc.bcm.edu	hg19	19	48806026	48806026	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CCDC114	NM_144577	exon10	c.A1054T	p.K352X	GCACCTTGTCCAT	.	62.0	9.0	61.0	0.0	.	100	.	.	Atlas-SNP
PIH1D1	55011	hgsc.bcm.edu	hg19	19	49954058	49954058	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PIH1D1	NM_017916	exon2	c.A138T	p.T46T	GATTTGTGTCGAT	.	77.0	29.0	67.0	0.0	.	23	.	.	Atlas-SNP
MYH14	79784	hgsc.bcm.edu	hg19	19	50752386	50752386	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MYH14	NM_001077186	exon13	c.A1472T	p.E491V	GCTTTGAGATCTT	.	153.0	14.0	135.0	0.0	.	261	.	.	Atlas-SNP
EMC10	284361	hgsc.bcm.edu	hg19	19	50984225	50984225	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	.	NM_175063	exon6	c.C669T	p.F223F	CTTCTTCGCCAAA	.	149.0	27.0	144.0	0.0	.	.	.	.	Atlas-SNP
SHANK1	50944	hgsc.bcm.edu	hg19	19	51201148	51201148	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SHANK1	NM_016148	exon12	c.T1813A	p.S605T	AGTCAGAGGGGAA	.	41.0	12.0	57.0	0.0	.	210	.	.	Atlas-SNP
ZNF320	162967	hgsc.bcm.edu	hg19	19	53384338	53384338	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ZNF320	NM_207333	exon4	c.T1041A	p.H347Q	CCTCCTATGTCTT	.	81.0	23.0	77.0	0.0	.	67	.	.	Atlas-SNP
VSTM1	284415	hgsc.bcm.edu	hg19	19	54545063	54545063	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	VSTM1	NM_198481	exon8	c.T561C	p.D187D	GGATAAATCTGCC	.	58.0	11.0	84.0	0.0	.	30	.	.	Atlas-SNP
FIZ1	84922	hgsc.bcm.edu	hg19	19	56109118	56109118	+	Silent	SNP	C	C	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	FIZ1	NM_032836	exon2	c.G114C	p.L38L	GCGCCGCAGGTCT	.	202.0	18.0	193.0	0.0	.	29	.	.	Atlas-SNP
ZNF582	147948	hgsc.bcm.edu	hg19	19	56896349	56896349	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ZNF582	NM_144690	exon5	c.A437T	p.H146L	TCTTCATGTCTGA	.	70.0	28.0	73.0	0.0	.	56	.	.	Atlas-SNP
CDC25B	994	hgsc.bcm.edu	hg19	20	3781408	3781408	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CDC25B	NM_021873	exon6	c.A478T	p.S160C	GGCCACAGCCCCG	.	97.0	14.0	106.0	0.0	.	76	.	.	Atlas-SNP
SMOX	54498	hgsc.bcm.edu	hg19	20	4163397	4163397	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SMOX	NM_175839	exon5	c.T1271A	p.L424Q	ATGTGCTGAGCGG	.	85.0	31.0	57.0	0.0	.	119	.	.	Atlas-SNP
XRN2	22803	hgsc.bcm.edu	hg19	20	21362681	21362681	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	XRN2	NM_012255	exon28	c.G2634A	p.Q878Q	CCAGCAGCAAAGG	.	84.0	13.0	54.0	0.0	.	90	.	.	Atlas-SNP
THBD	7056	hgsc.bcm.edu	hg19	20	23028430	23028430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	THBD	NM_000361	exon1	c.C1712T	p.T571M	TGCGGCGTCCGCT	.	144.0	8.0	104.0	0.0	.	26	.	.	Atlas-SNP
REM1	28954	hgsc.bcm.edu	hg19	20	30070206	30070206	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	REM1	NM_014012	exon4	c.G540T	p.R180R	GCTGCGGCGCACA	.	71.0	9.0	79.0	0.0	.	54	.	.	Atlas-SNP
MYLK2	85366	hgsc.bcm.edu	hg19	20	30408220	30408220	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MYLK2	NM_033118	exon3	c.A344T	p.Q115L	CTGAGCAGGGAGC	.	1612.0	314.0	1187.0	0.0	.	76	.	.	Atlas-SNP
E2F1	1869	hgsc.bcm.edu	hg19	20	32266109	32266109	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	E2F1	NM_005225	exon4	c.A623T	p.Q208L	AGGTCCTGGGTCA	.	175.0	38.0	132.0	0.0	.	41	.	.	Atlas-SNP
MAP1LC3A	84557	hgsc.bcm.edu	hg19	20	33147194	33147194	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	MAP1LC3A	NM_181509	exon4	c.T152A	p.L51Q	CCGTCCTGGACAA	.	131.0	17.0	103.0	0.0	.	10	.	.	Atlas-SNP
DHX35	60625	hgsc.bcm.edu	hg19	20	37662954	37662954	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	DHX35	NM_021931	exon21	c.A2061G	p.Q687Q	TCAACAAGGAACG	.	73.0	19.0	45.0	0.0	.	82	.	.	Atlas-SNP
HNF4A	3172	hgsc.bcm.edu	hg19	20	43058295	43058295	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	HNF4A	NM_000457	exon10	c.A1415T	p.E472V	AGCAGGAAGTTAT	.	132.0	15.0	121.0	0.0	.	150	.	.	Atlas-SNP
PABPC1L	80336	hgsc.bcm.edu	hg19	20	43566766	43566766	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PABPC1L	NM_001124756	exon13	c.G1710C	p.M570I	GGGCATGCTGCTG	.	126.0	10.0	117.0	0.0	.	59	.	.	Atlas-SNP
ZNF335	63925	hgsc.bcm.edu	hg19	20	44596976	44596976	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ZNF335	NM_022095	exon4	c.G468A	p.E156E	GCCATCCTCAGCA	.	79.0	7.0	59.0	0.0	.	115	.	.	Atlas-SNP
PREX1	57580	hgsc.bcm.edu	hg19	20	47361579	47361579	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PREX1	NM_020820	exon3	c.A397T	p.N133Y	AAACATTCCCAAG	.	164.0	18.0	109.0	0.0	.	441	.	.	Atlas-SNP
STX16	8675	hgsc.bcm.edu	hg19	20	57246334	57246334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	STX16	NM_001001433	exon7	c.G773A	p.G258E	ACTTAGGGGCGAT	.	125.0	15.0	98.0	0.0	.	36	.	.	Atlas-SNP
BIRC7	79444	hgsc.bcm.edu	hg19	20	61869278	61869278	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	BIRC7	NM_139317	exon2	c.T373A	p.F125I	AGGTGCTTCTTCT	.	180.0	26.0	140.0	0.0	.	25	.	.	Atlas-SNP
IFNAR2	3455	hgsc.bcm.edu	hg19	21	34625087	34625087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	IFNAR2	NM_207585	exon7	c.A661G	p.I221V	GCAGTAATAAAGT	.	169.0	34.0	181.0	0.0	.	44	.	.	Atlas-SNP
HLCS	3141	hgsc.bcm.edu	hg19	21	38308987	38308987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	HLCS	NM_000411	exon5	c.G758A	p.G253D	AAGCCACCAAAGG	.	116.0	23.0	166.0	0.0	.	64	.	.	Atlas-SNP
SLC5A1	6523	hgsc.bcm.edu	hg19	22	32462982	32462982	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	SLC5A1	NM_000343	exon3	c.A268C	p.T90P	GCCGGGACTGGGG	.	88.0	7.0	105.0	0.0	.	80	.	.	Atlas-SNP
TOMM22	56993	hgsc.bcm.edu	hg19	22	39078014	39078014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TOMM22	NM_020243	exon1	c.G31A	p.G11R	GGTGCAGGGGAAC	.	129.0	25.0	161.0	0.0	.	10	.	.	Atlas-SNP
PHEX	5251	hgsc.bcm.edu	hg19	X	22231054	22231054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PHEX	NM_000444	exon16	c.T1679C	p.F560S	CTTTCTTTTGGGG	.	206.0	65.0	178.0	0.0	.	95	.	.	Atlas-SNP
WDR45	11152	hgsc.bcm.edu	hg19	X	48935320	48935320	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	WDR45	NM_007075	exon5	c.A217T	p.K73X	AGAACTTGGGACT	.	75.0	23.0	66.0	0.0	.	40	.	.	Atlas-SNP
ALAS2	212	hgsc.bcm.edu	hg19	X	55052401	55052401	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ALAS2	NM_001037968	exon3	c.C105T	p.C35C	CACTGGGCAGCAC	.	54.0	24.0	66.0	0.0	.	163	.	.	Atlas-SNP
KLF8	11279	hgsc.bcm.edu	hg19	X	56295811	56295811	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	KLF8	NM_001159296	exon5	c.T647A	p.V216E	TTTTAGTGAAAGT	.	36.0	11.0	26.0	0.0	.	38	.	.	Atlas-SNP
RBM41	55285	hgsc.bcm.edu	hg19	X	106312542	106312542	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	RBM41	NM_001171080	exon6	c.A1018T	p.I340F	ATTGAATTGGAGG	.	110.0	34.0	92.0	0.0	.	34	.	.	Atlas-SNP
IRS4	8471	hgsc.bcm.edu	hg19	X	107975901	107975901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	IRS4	NM_003604	exon1	c.C3674A	p.P1225H	TCCGGGGGTCTTG	.	150.0	79.0	150.0	0.0	.	253	.	.	Atlas-SNP
THOC2	57187	hgsc.bcm.edu	hg19	X	122755374	122755374	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	THOC2	NM_001081550	exon31	c.A3850T	p.K1284X	GAGTCTTTTCTTT	.	73.0	11.0	38.0	0.0	.	310	.	.	Atlas-SNP
THOC2	57187	hgsc.bcm.edu	hg19	X	122755376	122755376	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	THOC2	NM_001081550	exon31	c.A3848C	p.E1283A	GTCTTTTCTTTTT	.	71.0	11.0	38.0	0.0	.	310	.	.	Atlas-SNP
DCAF12L2	340578	hgsc.bcm.edu	hg19	X	125299819	125299819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	DCAF12L2	NM_001013628	exon1	c.C89T	p.A30V	TCCGCCGCCGCTA	.	152.0	23.0	65.0	0.0	.	157	.	.	Atlas-SNP
USP26	83844	hgsc.bcm.edu	hg19	X	132161579	132161579	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	USP26	NM_031907	exon1	c.T670C	p.L224L	CTTTTAACTTCAA	.	108.0	27.0	54.0	0.0	.	135	.	.	Atlas-SNP
FHL1	2273	hgsc.bcm.edu	hg19	X	135291566	135291566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	FHL1	NM_001159702	exon7	c.A853G	p.R285G	CTTTATAGAAAAA	.	96.0	23.0	50.0	0.0	.	114	.	.	Atlas-SNP
BRS3	680	hgsc.bcm.edu	hg19	X	135570516	135570516	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	BRS3	NM_001727	exon1	c.T243A	p.V81V	AACAGTTCCAAAT	.	187.0	41.0	89.0	0.0	.	62	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	12818	12818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	.	ENST00000361567	exon1	c.G482A	p.R161Q	ACGCCCGAGCAGA	.	27.0	19.0	19.0	0.0	.	.	.	.	Atlas-SNP
TXN2	25828	hgsc.bcm.edu	hg19	22	36876815	36876815	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TXN2	NM_012473	exon2	c.71delG	p.W24fs	.	.	82.0	15.0	101.0	0.0	.	15	.	.	Atlas-INDEL
TMC6	11322	hgsc.bcm.edu	hg19	17	76121042	76121042	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	TMC6	NM_001127198	exon7	c.562delA	p.K188fs	.	.	95.0	10.0	100.0	0.0	.	42	.	.	Atlas-INDEL
HCN4	10021	hgsc.bcm.edu	hg19	15	73636059	73636059	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	HCN4	NM_005477	exon2	c.877delA	p.T293fs	.	.	159.0	37.0	125.0	0.0	.	150	.	.	Atlas-INDEL
COQ6	51004	hgsc.bcm.edu	hg19	14	74428174	74428177	+	Frame_Shift_Del	DEL	GTCC	GTCC	-	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	GTCC	GTCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	COQ6	NM_182476	exon10	c.1110_1113del	p.370_371del	.	.	63.0	13.0	79.0	0.0	.	27	.	.	Atlas-INDEL
APP	351	hgsc.bcm.edu	hg19	21	27328044	27328044	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	APP	NM_001204301	exon12	c.1485delG	p.K495fs	.	.	98.0	19.0	149.0	0.0	.	90	.	.	Atlas-INDEL
EGFR	1956	hgsc.bcm.edu	hg19	7	55248998	55248999	+	In_Frame_Ins	INS	-	-	TGGCCAGCG	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	EGFR,caecum,carcinoma,0,1	EGFR	NM_005228	exon20	c.2296_2297insTGGCCAGCG	p.M766delinsMASV	.	.	145.0	19.0	110.0	0.0	.	20426	.	.	Atlas-INDEL
ACLY	47	hgsc.bcm.edu	hg19	17	40063809	40063810	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	ACLY	NM_001096	exon7	c.633_634insG	p.G211fs	.	.	92.0	39.0	77.0	0.0	.	85	.	.	Atlas-INDEL
PRSS48	345062	hgsc.bcm.edu	hg19	4	152203321	152203321	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	PRSS48	NM_183375	exon3	c.236delA	p.Y79fs	.	.	135.0	21.0	94.0	0.0	.	91	.	.	Atlas-INDEL
EPM2A	7957	hgsc.bcm.edu	hg19	6	146056478	146056478	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	EPM2A	NM_001018041	exon1	c.158delC	p.A53fs	.	.	164.0	36.0	150.0	0.0	.	21	.	.	Atlas-INDEL
CSMD1	64478	hgsc.bcm.edu	hg19	8	3087715	3087715	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AACI-01A-11D-A40R-10	TCGA-DD-AACI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	247f1556-4111-4fee-ab12-312a9cd3b2ce	145d1bb3-e78f-4ac7-9b82-12983f7080e4	.	CSMD1	NM_033225	exon27	c.4193delA	p.Q1398fs	.	.	155.0	13.0	109.0	0.0	.	1469	.	.	Atlas-INDEL
