Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
OR6K2	81448	hgsc.bcm.edu	hg19	1	158669714	158669714	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	OR6K2	NM_001005279	exon1	c.C729T	p.V243V	GTGAGAGACACAC	.	330.0	42.0	223.0	0.0	.	104	.	.	Atlas-SNP
OR6N1	128372	hgsc.bcm.edu	hg19	1	158735540	158735540	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	OR6N1,NS,carcinoma,0,1	OR6N1	NM_001005185	exon1	c.G933A	p.L311L	TCATGCCAATATC	.	96.0	15.0	61.0	0.0	.	96	.	.	Atlas-SNP
GPR161	23432	hgsc.bcm.edu	hg19	1	168066166	168066166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	GPR161	NM_001267609	exon4	c.G739A	p.V247I	TGACGACTGTGCC	.	171.0	17.0	154.0	0.0	.	56	.	.	Atlas-SNP
PAPPA2	60676	hgsc.bcm.edu	hg19	1	176762739	176762739	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	PAPPA2	NM_020318	exon20	c.C5064T	p.P1688P	TGACCCCGTGATG	.	162.0	108.0	127.0	0.0	.	665	.	.	Atlas-SNP
KDM5B	10765	hgsc.bcm.edu	hg19	1	202702884	202702884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	KDM5B	NM_006618	exon23	c.C3554T	p.P1185L	GCAGCTGGGGCCT	.	195.0	44.0	146.0	0.0	.	166	.	.	Atlas-SNP
LYST	1130	hgsc.bcm.edu	hg19	1	235955183	235955183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	LYST	NM_000081	exon12	c.A4359G	p.I1453M	TGGGGCTATGTGC	.	166.0	77.0	134.0	0.0	.	370	.	.	Atlas-SNP
OR2L8	391190	hgsc.bcm.edu	hg19	1	248112256	248112256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	OR2L8	NM_001001963	exon1	c.A97G	p.I33V	GTTTTCATTTTCC	.	208.0	95.0	131.0	0.0	.	92	.	.	Atlas-SNP
NLRC4	58484	hgsc.bcm.edu	hg19	2	32476106	32476106	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	NLRC4	NM_001199138	exon4	c.T827A	p.I276N	GTGACGATGACCA	.	56.0	23.0	65.0	0.0	.	165	.	.	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32724675	32724675	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	BIRC6_ENST00000421745,NS,carcinoma,0,2	BIRC6	NM_016252	exon46	c.C8530T	p.L2844L	TTCACTCTGGAGC	.	66.0	23.0	75.0	0.0	.	838	.	.	Atlas-SNP
CNGA3	1261	hgsc.bcm.edu	hg19	2	99012481	99012481	+	Missense_Mutation	SNP	G	G	A	rs104893614	bycluster	TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	CNGA3,colon,carcinoma,+1,1	CNGA3	NM_001298	exon8	c.G848A	p.R283Q	TTTCCCGGCTCTT	.	165.0	61.0	179.0	0.0	.	118	.	G|1.000;A|0.000	Atlas-SNP
RANBP2	5903	hgsc.bcm.edu	hg19	2	109381547	109381547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	RANBP2	NM_006267	exon20	c.C4552T	p.P1518S	CCAACACCTGCCT	.	86.0	31.0	109.0	0.0	.	488	.	.	Atlas-SNP
SCN7A	6332	hgsc.bcm.edu	hg19	2	167288893	167288893	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	SCN7A	NM_002976	exon15	c.T2527A	p.S843T	TATCAGATTCTCC	.	51.0	22.0	99.0	0.0	.	410	.	.	Atlas-SNP
NUP35	129401	hgsc.bcm.edu	hg19	2	184022187	184022187	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	NUP35	NM_138285	exon6	c.T555A	p.S185S	AGCATCTGCTTCC	.	47.0	17.0	42.0	0.0	.	28	.	.	Atlas-SNP
MFSD6	54842	hgsc.bcm.edu	hg19	2	191334570	191334570	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	MFSD6	NM_017694	exon4	c.A1619C	p.E540A	CCATGGAAGTTCT	.	64.0	29.0	76.0	0.0	.	58	.	.	Atlas-SNP
NIF3L1	60491	hgsc.bcm.edu	hg19	2	201761868	201761868	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	NIF3L1	NM_001136039	exon5	c.A796C	p.I266L	ACCATGATTGATC	.	80.0	34.0	151.0	0.0	.	51	.	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	hg19	2	215852376	215852376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	ABCA12,bladder,carcinoma,0,1	ABCA12	NM_173076	exon27	c.C3971A	p.S1324Y	CTGGCAGATGGGT	.	222.0	11.0	255.0	0.0	.	368	.	.	Atlas-SNP
PRKAG3	53632	hgsc.bcm.edu	hg19	2	219692330	219692330	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	PRKAG3	NM_017431	exon8	c.C843G	p.F281L	AGGCTTGAAGCAG	.	90.0	32.0	92.0	0.0	.	47	.	.	Atlas-SNP
ACVR2B	93	hgsc.bcm.edu	hg19	3	38520626	38520626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	ACVR2B	NM_001106	exon6	c.A674G	p.Q225R	ACAAGCAGTCGTG	.	191.0	76.0	254.0	0.0	.	88	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266124	41266124	+	Missense_Mutation	SNP	A	A	G	rs121913412	bycluster	TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	CTNNB1,gallbladder,other,0,1	CTNNB1	NM_001098209	exon3	c.A121G	p.T41A	GCCACTACCACAG	.	134.0	53.0	190.0	1.0	.	4904	.	.	Atlas-SNP
RAD54L2	23132	hgsc.bcm.edu	hg19	3	51664804	51664804	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	RAD54L2	NM_015106	exon6	c.G682T	p.E228X	GAGGAAGAAGAGA	.	55.0	27.0	61.0	0.0	.	94	.	.	Atlas-SNP
PSMD6	9861	hgsc.bcm.edu	hg19	3	64004653	64004653	+	Silent	SNP	A	A	C	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	PSMD6	NM_001271779	exon5	c.T717G	p.L239L	ACAATAAAGACCC	.	184.0	62.0	257.0	0.0	.	30	.	.	Atlas-SNP
SHQ1	55164	hgsc.bcm.edu	hg19	3	72873605	72873605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	SHQ1	NM_018130	exon6	c.A697G	p.S233G	CCTGACTCTTTTC	.	70.0	25.0	106.0	0.0	.	60	.	.	Atlas-SNP
GOLGB1	2804	hgsc.bcm.edu	hg19	3	121410757	121410757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	GOLGB1	NM_001256486	exon14	c.A7454G	p.Y2485C	TGTTGATAGTCAC	.	90.0	39.0	144.0	0.0	.	319	.	.	Atlas-SNP
DTX3L	151636	hgsc.bcm.edu	hg19	3	122284854	122284854	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	DTX3L	NM_138287	exon2	c.G336A	p.P112P	AACACCGTCTGGT	.	109.0	40.0	166.0	0.0	.	59	.	.	Atlas-SNP
P2RY1	5028	hgsc.bcm.edu	hg19	3	152554320	152554320	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	P2RY1	NM_002563	exon1	c.A749T	p.D250V	ATCTGGACAACTC	.	83.0	38.0	109.0	0.0	.	49	.	.	Atlas-SNP
WWC2	80014	hgsc.bcm.edu	hg19	4	184180883	184180883	+	Splice_Site	SNP	T	T	G	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	WWC2	NM_024949	exon10	c.1286+2T>G	.	AAAAGGTGAGCTT	.	208.0	93.0	285.0	1.0	.	78	.	.	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	hg19	4	187510117	187510117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	FAT1	NM_005245	exon27	c.A13396G	p.R4466G	TGTCTCTAGGAGG	.	194.0	63.0	217.0	0.0	.	500	.	.	Atlas-SNP
ZSWIM6	57688	hgsc.bcm.edu	hg19	5	60825879	60825879	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	ZSWIM6	NM_020928	exon8	c.A1838T	p.E613V	ACACAGAGCTACC	.	151.0	90.0	163.0	0.0	.	51	.	.	Atlas-SNP
ST8SIA4	7903	hgsc.bcm.edu	hg19	5	100231434	100231434	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	ST8SIA4,NS,carcinoma,+1,1	ST8SIA4	NM_175052	exon2	c.C169T	p.R57X	CCTTTCGAATGAT	.	137.0	39.0	119.0	0.0	.	77	.	.	Atlas-SNP
ADAMTS19	171019	hgsc.bcm.edu	hg19	5	128861992	128861992	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	ADAMTS19	NM_133638	exon4	c.G911C	p.R304T	GACCTAGGTCTAG	.	345.0	210.0	315.0	0.0	.	216	.	.	Atlas-SNP
UBR2	23304	hgsc.bcm.edu	hg19	6	42629942	42629942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	UBR2	NM_015255	exon31	c.A3463G	p.M1155V	TTATTCATGCACC	.	66.0	14.0	60.0	0.0	.	134	.	.	Atlas-SNP
MLIP	90523	hgsc.bcm.edu	hg19	6	54095631	54095631	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	MLIP	NM_138569	exon11	c.A1233G	p.P411P	TGCCCCAGGACCC	.	73.0	40.0	66.0	0.0	.	84	.	.	Atlas-SNP
GPR63	81491	hgsc.bcm.edu	hg19	6	97246634	97246634	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	GPR63	NM_030784	exon2	c.T974C	p.V325A	CAGCAGACAATGA	.	169.0	53.0	166.0	0.0	.	60	.	.	Atlas-SNP
TFB1M	51106	hgsc.bcm.edu	hg19	6	155632360	155632360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	TFB1M	NM_016020	exon2	c.G247T	p.V83L	CAACCACCAGAAG	.	130.0	46.0	106.0	0.0	.	30	.	.	Atlas-SNP
RADIL	55698	hgsc.bcm.edu	hg19	7	4917682	4917682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	RADIL	NM_018059	exon2	c.G89A	p.R30Q	AGCGTCCGGGACA	.	58.0	26.0	71.0	0.0	.	110	.	.	Atlas-SNP
ANKMY2	57037	hgsc.bcm.edu	hg19	7	16666729	16666729	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	ANKMY2	NM_020319	exon3	c.A207T	p.G69G	ATCGGCTCCATGT	.	61.0	17.0	77.0	0.0	.	46	.	.	Atlas-SNP
PLEKHA8	84725	hgsc.bcm.edu	hg19	7	30102308	30102308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	PLEKHA8	NM_001197027	exon12	c.G1250T	p.G417V	TGAAGGGATTTTT	.	54.0	18.0	58.0	0.0	.	68	.	.	Atlas-SNP
CFTR	1080	hgsc.bcm.edu	hg19	7	117243681	117243681	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	CFTR	NM_000492	exon17	c.T2753A	p.I918N	TTTACATTTACGT	.	112.0	21.0	125.0	0.0	.	171	.	.	Atlas-SNP
LONRF1	91694	hgsc.bcm.edu	hg19	8	12589255	12589255	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	LONRF1	NM_152271	exon8	c.G1678T	p.E560X	AGAGTTCAGCAGT	.	99.0	69.0	234.0	1.0	.	45	.	.	Atlas-SNP
TRIB1	10221	hgsc.bcm.edu	hg19	8	126445629	126445629	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	TRIB1	NM_025195	exon2	c.C431G	p.T144S	ACATTACTGGCAT	.	273.0	53.0	138.0	0.0	.	73	.	.	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	hg19	8	139895407	139895407	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	COL22A1	NM_152888	exon2	c.C9A	p.G3G	TCGGAGGCCGGCC	.	154.0	82.0	74.0	0.0	.	390	.	.	Atlas-SNP
IGFBPL1	347252	hgsc.bcm.edu	hg19	9	38411534	38411534	+	Silent	SNP	G	G	T	rs375493692	alternate_allele	TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	IGFBPL1	NM_001007563	exon4	c.C700A	p.R234R	CCTTTCGCAGGGG	.	70.0	20.0	76.0	0.0	.	8	.	.	Atlas-SNP
NTRK2	4915	hgsc.bcm.edu	hg19	9	87635234	87635234	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	NTRK2	NM_006180	exon20	c.T2286A	p.I762I	GGAGATTTTCACC	.	114.0	37.0	153.0	0.0	.	331	.	.	Atlas-SNP
PTCHD3	374308	hgsc.bcm.edu	hg19	10	27702854	27702854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	PTCHD3	NM_001034842	exon1	c.G326A	p.R109K	CGGTGCCTGCAGA	.	38.0	13.0	67.0	0.0	.	140	.	.	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	hg19	10	50085112	50085112	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	WDFY4	NM_020945	exon43	c.G7035A	p.P2345P	CGAGCCGGACGAG	.	81.0	33.0	131.0	0.0	.	205	.	.	Atlas-SNP
UNC5B	219699	hgsc.bcm.edu	hg19	10	73050696	73050696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	UNC5B	NM_170744	exon9	c.C1124T	p.A375V	ATGCGGCGCTGTA	.	47.0	22.0	69.0	0.0	.	123	.	.	Atlas-SNP
ABCC2	1244	hgsc.bcm.edu	hg19	10	101590535	101590535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	ABCC2	NM_000392	exon21	c.A2810G	p.N937S	ATGTGAATAGCCT	.	96.0	49.0	170.0	0.0	.	160	.	.	Atlas-SNP
PKD2L1	9033	hgsc.bcm.edu	hg19	10	102054310	102054310	+	Silent	SNP	G	G	A	rs148570260		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	PKD2L1	NM_016112	exon9	c.C1641T	p.F547F	GAAGACGAAGAAG	.	132.0	50.0	151.0	0.0	.	103	.	G|1.000;A|0.000	Atlas-SNP
C11orf16	56673	hgsc.bcm.edu	hg19	11	8950997	8950997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	C11orf16	NM_020643	exon3	c.C251T	p.A84V	GTGTTGGCAGCAT	.	73.0	29.0	104.0	0.0	.	43	.	.	Atlas-SNP
PLEKHA7	144100	hgsc.bcm.edu	hg19	11	16863238	16863238	+	Missense_Mutation	SNP	T	T	C	rs200394760	bycluster	TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	PLEKHA7	NM_175058	exon9	c.A728G	p.Y243C	CTGTTATAGATGA	.	37.0	16.0	49.0	0.0	.	120	.	T|0.999;C|0.001	Atlas-SNP
API5	8539	hgsc.bcm.edu	hg19	11	43340327	43340327	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	API5	NM_006595	exon2	c.C207T	p.D69D	GTTAGACCTCTGT	.	37.0	19.0	27.0	0.0	.	91	.	.	Atlas-SNP
SPCS2	9789	hgsc.bcm.edu	hg19	11	74687909	74687909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	SPCS2	NM_014752	exon5	c.G502A	p.D168N	TTTGATGACAAAT	.	316.0	110.0	367.0	0.0	.	17	.	.	Atlas-SNP
ATM	472	hgsc.bcm.edu	hg19	11	108124684	108124684	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	ATM	NM_000051	exon13	c.C2042G	p.S681C	GCTTCTCTGTCCA	.	43.0	16.0	64.0	0.0	.	1657	.	.	Atlas-SNP
C2CD2L	9854	hgsc.bcm.edu	hg19	11	118984970	118984970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	C2CD2L	NM_014807	exon13	c.G1807A	p.E603K	GCAGACGAGACAA	.	60.0	28.0	89.0	0.0	.	39	.	.	Atlas-SNP
GRAMD1B	57476	hgsc.bcm.edu	hg19	11	123477353	123477353	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	GRAMD1B	NM_020716	exon10	c.G931C	p.G311R	CTGGAGGGAGACG	.	63.0	22.0	81.0	0.0	.	122	.	.	Atlas-SNP
ACRV1	56	hgsc.bcm.edu	hg19	11	125546342	125546342	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	ACRV1	NM_001612	exon3	c.T585C	p.Y195Y	ATTCATATAAGCA	.	64.0	30.0	69.0	0.0	.	21	.	.	Atlas-SNP
FAR2	55711	hgsc.bcm.edu	hg19	12	29460716	29460716	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	FAR2	NM_018099	exon5	c.T671C	p.I224T	TGAACATTGCCAT	.	56.0	25.0	65.0	0.0	.	60	.	.	Atlas-SNP
STAC3	246329	hgsc.bcm.edu	hg19	12	57642930	57642930	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	STAC3	NM_145064	exon3	c.G228A	p.E76E	GGGTGGCTCCTCC	.	42.0	19.0	55.0	0.0	.	32	.	.	Atlas-SNP
XPOT	11260	hgsc.bcm.edu	hg19	12	64813856	64813856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	XPOT	NM_007235	exon7	c.C496T	p.R166C	GAGGCTCGTAGGA	.	40.0	17.0	52.0	0.0	.	105	.	.	Atlas-SNP
KBTBD6	89890	hgsc.bcm.edu	hg19	13	41705671	41705671	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	KBTBD6	NM_152903	exon1	c.C977G	p.S326C	ACAAGAGAGTTGC	.	243.0	76.0	294.0	0.0	.	83	.	.	Atlas-SNP
HECTD1	25831	hgsc.bcm.edu	hg19	14	31576900	31576900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	HECTD1	NM_015382	exon37	c.T6491C	p.L2164S	TCTCCTAAAAATT	.	66.0	28.0	71.0	0.0	.	159	.	.	Atlas-SNP
PSEN1	5663	hgsc.bcm.edu	hg19	14	73678608	73678608	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	PSEN1	NM_000021	exon10	c.G1087C	p.E363Q	GTCCAGGAACTTT	.	106.0	39.0	109.0	0.0	.	38	.	.	Atlas-SNP
TRIP11	9321	hgsc.bcm.edu	hg19	14	92488109	92488109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	TRIP11	NM_004239	exon4	c.G379A	p.A127T	GAGCAGCTGACTG	.	43.0	11.0	70.0	0.0	.	184	.	.	Atlas-SNP
GABRB3	2562	hgsc.bcm.edu	hg19	15	26866602	26866602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	GABRB3	NM_021912	exon4	c.C320T	p.T107M	TCAAGCGTGAGGT	.	94.0	34.0	123.0	0.0	.	338	.	.	Atlas-SNP
KIF7	374654	hgsc.bcm.edu	hg19	15	90171679	90171679	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	KIF7	NM_198525	exon19	c.A4003T	p.M1335L	CAATCATCCCCGG	.	94.0	37.0	110.0	0.0	.	130	.	.	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	hg19	16	20966168	20966168	+	Missense_Mutation	SNP	C	C	T	rs142557616	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	DNAH3	NM_017539	exon55	c.G11038A	p.V3680I	GAACAACGGCGTG	.	75.0	32.0	95.0	0.0	.	1142	.	C|0.996;A|0.004	Atlas-SNP
RBBP6	5930	hgsc.bcm.edu	hg19	16	24583618	24583618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	RBBP6	NM_006910	exon18	c.A5231G	p.H1744R	AAAAGCATAAGAA	.	212.0	99.0	204.0	0.0	.	158	.	.	Atlas-SNP
SNX20	124460	hgsc.bcm.edu	hg19	16	50707378	50707378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	SNX20	NM_182854	exon4	c.G890A	p.R297Q	GGCCTCCGGAGCT	.	58.0	25.0	72.0	0.0	.	50	.	.	Atlas-SNP
IST1	9798	hgsc.bcm.edu	hg19	16	71961659	71961659	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	.	NM_001270976	exon11	c.A1083C	p.E361D	ATCTGAAGACATT	.	53.0	28.0	61.0	0.0	.	.	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88495895	88495895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	ZNF469	NM_001127464	exon1	c.G2017A	p.A673T	TTTCCCGCAGATG	.	195.0	18.0	252.0	0.0	.	121	.	.	Atlas-SNP
C17orf74	201243	hgsc.bcm.edu	hg19	17	7329876	7329876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	C17orf74	NM_175734	exon3	c.A566G	p.D189G	AGGAGGACAACCT	.	30.0	20.0	70.0	0.0	.	56	.	.	Atlas-SNP
KRBA2	124751	hgsc.bcm.edu	hg19	17	8272535	8272535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	KRBA2	NM_213597	exon2	c.G1396T	p.D466Y	CCATATCAGATCT	.	36.0	25.0	101.0	0.0	.	34	.	.	Atlas-SNP
ZNF286B	729288	hgsc.bcm.edu	hg19	17	18566384	18566384	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	ZNF286B	NM_001145045	exon5	c.G435T	p.R145R	ACTATTCCGTGTC	.	111.0	78.0	253.0	1.0	.	75	.	.	Atlas-SNP
SLC13A2	9058	hgsc.bcm.edu	hg19	17	26817351	26817351	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	SLC13A2	NM_001145975	exon3	c.T258A	p.S86R	ATCCAGTTTCGAG	.	157.0	29.0	81.0	0.0	.	125	.	.	Atlas-SNP
KRT20	54474	hgsc.bcm.edu	hg19	17	39034466	39034466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	KRT20	NM_019010	exon6	c.T1070C	p.L357P	ATGTCAAGAAGGA	.	136.0	21.0	102.0	0.0	.	38	.	.	Atlas-SNP
NME1-NME2	654364	hgsc.bcm.edu	hg19	17	49247317	49247317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	NME1-NME2	NM_001018136	exon7	c.T593C	p.V198A	TGAACGTGGTGAA	.	188.0	32.0	79.0	0.0	.	17	.	.	Atlas-SNP
USH1G	124590	hgsc.bcm.edu	hg19	17	72916457	72916457	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	USH1G	NM_173477	exon2	c.C474T	p.H158H	GCGTTCGTGGTGC	.	90.0	14.0	55.0	0.0	.	40	.	.	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	hg19	18	7008502	7008502	+	Silent	SNP	C	C	A	rs374423781		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	LAMA1	NM_005559	exon28	c.G4107T	p.V1369V	GAATCCCACAGTG	.	69.0	31.0	67.0	0.0	.	458	.	.	Atlas-SNP
ZNF397	84307	hgsc.bcm.edu	hg19	18	32825455	32825455	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	ZNF397	NM_001135178	exon4	c.T786A	p.A262A	TGAGGCTGAAAGA	.	105.0	24.0	94.0	0.0	.	51	.	.	Atlas-SNP
LPPR3	0	hgsc.bcm.edu	hg19	19	813158	813158	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	.	NM_024888	exon7	c.C1653T	p.A551A	CTTCTCGGCCATC	.	28.0	6.0	30.0	0.0	.	.	.	.	Atlas-SNP
MBD3L1	85509	hgsc.bcm.edu	hg19	19	8953470	8953470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	MBD3L1	NM_145208	exon1	c.T116C	p.V39A	GGCCAGTAACGAG	.	116.0	53.0	157.0	0.0	.	24	.	.	Atlas-SNP
STX10	8677	hgsc.bcm.edu	hg19	19	13260405	13260405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	STX10	NM_003765	exon3	c.A208G	p.I70V	CCACTATACGTGG	.	72.0	26.0	86.0	0.0	.	12	.	.	Atlas-SNP
ZNF100	163227	hgsc.bcm.edu	hg19	19	21909720	21909720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	ZNF100	NM_173531	exon5	c.C1394T	p.A465V	TTAAAGGCTTTGC	.	33.0	15.0	62.0	0.0	.	62	.	.	Atlas-SNP
ZNF284	342909	hgsc.bcm.edu	hg19	19	44590539	44590539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	ZNF284	NM_001037813	exon5	c.A908G	p.N303S	ATCTTAATAGGCA	.	53.0	21.0	64.0	0.0	.	38	.	.	Atlas-SNP
SIX5	147912	hgsc.bcm.edu	hg19	19	46271365	46271365	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	SIX5	NM_175875	exon1	c.C738T	p.S246S	CCAGTTGCTGACC	.	35.0	13.0	53.0	0.0	.	35	.	.	Atlas-SNP
SIX5	147912	hgsc.bcm.edu	hg19	19	46271366	46271366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	SIX5	NM_175875	exon1	c.G737T	p.S246I	CAGTTGCTGACCT	.	35.0	13.0	55.0	0.0	.	35	.	.	Atlas-SNP
ADRA1D	146	hgsc.bcm.edu	hg19	20	4202607	4202607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	ADRA1D	NM_000678	exon2	c.C1282T	p.R428C	GAGGGCGGCGGCG	.	45.0	19.0	62.0	0.0	.	36	.	.	Atlas-SNP
ARFGEF2	10564	hgsc.bcm.edu	hg19	20	47605200	47605200	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	ARFGEF2	NM_006420	exon18	c.2533+1G>A	.	AGCAGAGTAAGGT	.	178.0	62.0	211.0	0.0	.	160	.	.	Atlas-SNP
KRTAP10-7	386675	hgsc.bcm.edu	hg19	21	46020913	46020913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	KRTAP10-7	NM_198689	exon2	c.T377C	p.V126A	ACTGTGTGCCTGT	.	70.0	27.0	96.0	0.0	.	41	.	.	Atlas-SNP
HIRA	7290	hgsc.bcm.edu	hg19	22	19373215	19373215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	HIRA	NM_003325	exon12	c.G1158A	p.M386I	CTCGGTCATGATG	.	80.0	26.0	68.0	0.0	.	100	.	.	Atlas-SNP
BCR	613	hgsc.bcm.edu	hg19	22	23632562	23632562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	BCR	NM_021574	exon14	c.T2744C	p.V915A	TGAATGTCATCGT	.	73.0	27.0	71.0	0.0	.	74	.	.	Atlas-SNP
SREBF2	6721	hgsc.bcm.edu	hg19	22	42269979	42269979	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	SREBF2	NM_004599	exon5	c.A1045G	p.K349E	AATGACAAAATCA	.	220.0	52.0	196.0	0.0	.	99	.	.	Atlas-SNP
CHIC1	53344	hgsc.bcm.edu	hg19	X	72783217	72783217	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	CHIC1	NM_001039840	exon1	c.T97C	p.S33P	TCGCCGTCGTCGT	.	98.0	4.0	104.0	0.0	.	13	.	.	Atlas-SNP
IFI30	10437	hgsc.bcm.edu	hg19	19	18284678	18284678	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	IFI30	NM_006332	exon1	c.26delT	p.F9fs	.	.	35.0	20.0	42.0	0.0	.	12	.	.	Atlas-INDEL
USP2	9099	hgsc.bcm.edu	hg19	11	119243702	119243707	+	In_Frame_Del	DEL	GGGGTC	GGGGTC	-	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	GGGGTC	GGGGTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	USP2	NM_004205	exon2	c.485_490del	p.162_164del	.	.	56.0	20.0	71.0	0.0	.	71	.	.	Atlas-INDEL
FARSA	2193	hgsc.bcm.edu	hg19	19	13035721	13035740	+	Frame_Shift_Del	DEL	CTGGGCAAGGCGGTAGAGCG	CTGGGCAAGGCGGTAGAGCG	-	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	CTGGGCAAGGCGGTAGAGCG	CTGGGCAAGGCGGTAGAGCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	FARSA	NM_004461	exon9	c.1005_1024del	p.335_342del	.	.	89.0	31.0	103.0	0.0	.	46	.	.	Atlas-INDEL
GPR144	347088	hgsc.bcm.edu	hg19	9	127217400	127217406	+	Frame_Shift_Del	DEL	CCGTGAA	CCGTGAA	-	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	CCGTGAA	CCGTGAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	GPR144	NM_001161808	exon7	c.1442_1448del	p.481_483del	.	.	38.0	15.0	47.0	0.0	.	33	.	.	Atlas-INDEL
REST	5978	hgsc.bcm.edu	hg19	4	57796354	57796355	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	REST	NM_001193508	exon4	c.1330_1331insA	p.E444fs	.	.	185.0	84.0	236.0	0.0	.	104	.	.	Atlas-INDEL
JAM3	83700	hgsc.bcm.edu	hg19	11	134018452	134018452	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	JAM3	NM_032801	exon7	c.722delA	p.N241fs	.	.	103.0	48.0	128.0	0.0	.	41	.	.	Atlas-INDEL
DEAF1	10522	hgsc.bcm.edu	hg19	11	694962	694988	+	In_Frame_Del	DEL	GCCGCCGCCGCCACAGCGGCCGCGGCC	GCCGCCGCCGCCACAGCGGCCGCGGCC	-	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	GCCGCCGCCGCCACAGCGGCCGCGGCC	GCCGCCGCCGCCACAGCGGCCGCGGCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	DEAF1,NS,carcinoma,0,1	DEAF1	NM_021008	exon1	c.61_87del	p.21_29del	.	.	14.0	13.0	18.0	0.0	.	47	.	.	Atlas-INDEL
TEP1	7011	hgsc.bcm.edu	hg19	14	20851711	20851711	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AACJ-01A-11D-A40R-10	TCGA-DD-AACJ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	23475083-0f7f-4acb-a446-f65a896c9c60	a29286c8-285a-4358-9bcc-357f531707af	.	TEP1	NM_007110	exon26	c.3804delT	p.A1268fs	.	.	94.0	43.0	100.0	0.0	.	224	.	.	Atlas-INDEL
