Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
SKI	6497	hgsc.bcm.edu	hg19	1	2236002	2236002	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SKI	NM_003036	exon5	c.A1745T	p.Q582L	CCCTGCAGGCCAA	.	83.0	14.0	67.0	0.0	.	33	.	.	Atlas-SNP
SLC45A1	50651	hgsc.bcm.edu	hg19	1	8384424	8384424	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SLC45A1	NM_001080397	exon1	c.A35T	p.D12V	CGGGAGATGCCCT	.	79.0	19.0	82.0	0.0	.	85	.	.	Atlas-SNP
EXOSC10	5394	hgsc.bcm.edu	hg19	1	11142771	11142771	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	EXOSC10	NM_001001998	exon10	c.A1254G	p.Q418Q	CTGATATTGCTTG	.	122.0	22.0	101.0	0.0	.	59	.	.	Atlas-SNP
LRRC38	126755	hgsc.bcm.edu	hg19	1	13839491	13839491	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	LRRC38	NM_001010847	exon1	c.T598A	p.W200R	GGATCCAGGAGAA	.	153.0	35.0	146.0	0.0	.	12	.	.	Atlas-SNP
NBPF3	84224	hgsc.bcm.edu	hg19	1	21799874	21799874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	NBPF3	NM_001256416	exon7	c.C736T	p.L246F	ATCAGGGAGGTGC	.	133.0	39.0	90.0	0.0	.	55	.	.	Atlas-SNP
CLSPN	63967	hgsc.bcm.edu	hg19	1	36226433	36226433	+	Missense_Mutation	SNP	T	T	A	rs78526448	bycluster;alternate_allele	TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CLSPN	NM_001190481	exon8	c.A1089T	p.K363N	AGAACCTTTACTA	.	40.0	7.0	34.0	0.0	.	248	.	.	Atlas-SNP
MSH4	4438	hgsc.bcm.edu	hg19	1	76378494	76378494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	MSH4	NM_002440	exon20	c.A2733G	p.I911M	ACGAATATATTTA	.	156.0	34.0	149.0	0.0	.	147	.	.	Atlas-SNP
LPHN2	23266	hgsc.bcm.edu	hg19	1	82456641	82456641	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	LPHN2	NM_012302	exon20	c.A4024T	p.R1342W	CCCTCCAGGAGGA	.	98.0	18.0	99.0	0.0	.	464	.	.	Atlas-SNP
RPAP2	79871	hgsc.bcm.edu	hg19	1	92846304	92846304	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	RPAP2	NM_024813	exon12	c.A1712T	p.Q571L	GCATTCAGAAACA	.	67.0	13.0	65.0	0.0	.	48	.	.	Atlas-SNP
IGSF3	3321	hgsc.bcm.edu	hg19	1	117127378	117127378	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	IGSF3	NM_001542	exon10	c.A2797T	p.S933C	TCCCGCTGTCCTG	.	102.0	28.0	76.0	0.0	.	294	.	.	Atlas-SNP
CGN	57530	hgsc.bcm.edu	hg19	1	151501990	151501990	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CGN	NM_020770	exon11	c.A2061G	p.Q687Q	GCTACAAAAGACC	.	250.0	94.0	166.0	0.0	.	106	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152281864	152281864	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	FLG	NM_002016	exon3	c.T5498A	p.V1833E	CTATCTACCGATT	.	116.0	31.0	84.0	0.0	.	900	.	.	Atlas-SNP
S100A7A	338324	hgsc.bcm.edu	hg19	1	153391627	153391627	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	S100A7A	NM_176823	exon3	c.A148T	p.K50X	GACAAAAAGGGCA	.	337.0	122.0	226.0	0.0	.	24	.	.	Atlas-SNP
THBS3	7059	hgsc.bcm.edu	hg19	1	155165894	155165894	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	THBS3	NM_007112	exon22	c.A2696T	p.Q899L	ACAAGCTGGGGTC	.	131.0	16.0	69.0	0.0	.	70	.	.	Atlas-SNP
ARHGAP30	257106	hgsc.bcm.edu	hg19	1	161023128	161023128	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ARHGAP30	NM_001025598	exon6	c.T584A	p.M195K	ACCTCCATGAAGG	.	119.0	46.0	79.0	0.0	.	105	.	.	Atlas-SNP
OLFML2B	25903	hgsc.bcm.edu	hg19	1	161968003	161968003	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	OLFML2B	NM_015441	exon6	c.C1086T	p.S362S	CAGGTCGCTTGTC	.	135.0	24.0	111.0	0.0	.	114	.	.	Atlas-SNP
KIF21B	23046	hgsc.bcm.edu	hg19	1	200974470	200974470	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	KIF21B	NM_017596	exon5	c.T698A	p.L233Q	TGGCACAGGTGGA	.	58.0	21.0	43.0	0.0	.	208	.	.	Atlas-SNP
NFASC	23114	hgsc.bcm.edu	hg19	1	204923314	204923314	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	NFASC	NM_015090	exon5	c.198-2A>T	.	CTCCACAGCTTCC	.	86.0	23.0	72.0	0.0	.	396	.	.	Atlas-SNP
TGFB2	7042	hgsc.bcm.edu	hg19	1	218609331	218609331	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	TGFB2	NM_001135599	exon6	c.A858T	p.T286T	CTCCACATATACC	.	193.0	28.0	100.0	0.0	.	102	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228520596	228520596	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	OBSCN	NM_001271223	exon68	c.A18559T	p.T6187S	GATGCCACGGAGT	.	94.0	16.0	99.0	0.0	.	2142	.	.	Atlas-SNP
OR2T12	127064	hgsc.bcm.edu	hg19	1	248458280	248458280	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	OR2T12	NM_001004692	exon1	c.T601A	p.C201S	ACACACAGCAGAT	.	529.0	177.0	441.0	0.0	.	113	.	.	Atlas-SNP
NTSR2	23620	hgsc.bcm.edu	hg19	2	11798756	11798756	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	NTSR2	NM_012344	exon4	c.T1082A	p.V361E	GAGGACACGGCGT	.	112.0	27.0	66.0	0.0	.	36	.	.	Atlas-SNP
DPYSL5	56896	hgsc.bcm.edu	hg19	2	27121452	27121452	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	DPYSL5	NM_001253724	exon2	c.T85A	p.Y29N	GACGTCTACATCG	.	208.0	38.0	219.0	0.0	.	69	.	.	Atlas-SNP
LRPPRC	10128	hgsc.bcm.edu	hg19	2	44187687	44187687	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	LRPPRC	NM_133259	exon13	c.A1575T	p.L525F	AAATGATAATACA	.	71.0	12.0	52.0	0.0	.	105	.	.	Atlas-SNP
TSPYL6	388951	hgsc.bcm.edu	hg19	2	54483166	54483166	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	TSPYL6	NM_001003937	exon1	c.T123C	p.D41D	GCGGCCATCAAAC	.	82.0	18.0	93.0	0.0	.	54	.	.	Atlas-SNP
LMAN2L	81562	hgsc.bcm.edu	hg19	2	97373021	97373021	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	LMAN2L	NM_001142292	exon9	c.A1052T	p.Q351L	TGTTCCTGCCATT	.	169.0	39.0	164.0	0.0	.	27	.	.	Atlas-SNP
CHST10	9486	hgsc.bcm.edu	hg19	2	101023082	101023082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CHST10	NM_004854	exon3	c.T56C	p.M19T	GCCACCATGAACA	.	127.0	37.0	98.0	0.0	.	42	.	.	Atlas-SNP
RIF1	55183	hgsc.bcm.edu	hg19	2	152298453	152298453	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	RIF1	NM_018151	exon16	c.A1682T	p.Q561L	TTCCTCAGAAAGT	.	429.0	108.0	336.0	0.0	.	244	.	.	Atlas-SNP
TANC1	85461	hgsc.bcm.edu	hg19	2	160086384	160086384	+	Missense_Mutation	SNP	G	G	T	rs370179463	alternate_allele	TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	TANC1	NM_033394	exon27	c.G4447T	p.V1483F	TCATCTGTCCCTT	.	149.0	37.0	116.0	0.0	.	157	.	.	Atlas-SNP
PLA2R1	22925	hgsc.bcm.edu	hg19	2	160873149	160873149	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PLA2R1	NM_001195641	exon9	c.T1527A	p.S509S	AGCATCAGAGAGG	.	100.0	20.0	87.0	0.0	.	153	.	.	Atlas-SNP
SCN3A	6328	hgsc.bcm.edu	hg19	2	165987869	165987869	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SCN3A	NM_006922	exon16	c.A2450C	p.Y817S	TAGTAATAAGGAT	.	295.0	71.0	248.0	0.0	.	544	.	.	Atlas-SNP
GAD1	2571	hgsc.bcm.edu	hg19	2	171705847	171705847	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	GAD1	NM_000817	exon12	c.A1171T	p.N391Y	AAACTCAACGGCA	.	46.0	14.0	39.0	0.0	.	79	.	.	Atlas-SNP
PDE11A	50940	hgsc.bcm.edu	hg19	2	178528616	178528616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	PDE11A_ENST00000358450,caecum,carcinoma,0,2	PDE11A	NM_016953	exon19	c.G2624A	p.S875N	CAGATGCTATCAA	.	70.0	19.0	72.0	0.0	.	283	.	.	Atlas-SNP
CWC22	57703	hgsc.bcm.edu	hg19	2	180835257	180835257	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CWC22	NM_020943	exon11	c.A1181T	p.N394I	TCTTCATTCTCCA	.	251.0	52.0	218.0	0.0	.	62	.	.	Atlas-SNP
FRZB	2487	hgsc.bcm.edu	hg19	2	183699694	183699694	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	FRZB	NM_001463	exon7	c.862-2A>T	.	CAGCGCTGTGAAA	.	73.0	30.0	66.0	0.0	.	42	.	.	Atlas-SNP
CCDC150	284992	hgsc.bcm.edu	hg19	2	197540923	197540923	+	Silent	SNP	A	A	T	rs367679012	alternate_allele	TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CCDC150	NM_001080539	exon11	c.A1194T	p.A398A	GGATGCAGCCCAT	.	253.0	65.0	214.0	0.0	.	96	.	.	Atlas-SNP
MAP2	4133	hgsc.bcm.edu	hg19	2	210560487	210560487	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	MAP2,NS,carcinoma,0,1	MAP2	NM_002374	exon7	c.A3593T	p.Q1198L	TTATTCAGGGGCC	.	131.0	32.0	111.0	0.0	.	372	.	.	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210778581	210778581	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	UNC80	NM_032504	exon30	c.T4748A	p.L1583Q	CAATTCTGACAGA	.	167.0	34.0	199.0	0.0	.	280	.	.	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210858068	210858068	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	UNC80	NM_032504	exon62	c.A9228T	p.K3076N	TCAGAAAACTCAG	.	135.0	32.0	100.0	0.0	.	280	.	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	hg19	2	215840627	215840627	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ABCA12	NM_173076	exon34	c.A5263T	p.I1755F	AGACGATGGGGAG	.	199.0	61.0	136.0	0.0	.	368	.	.	Atlas-SNP
RESP18	389075	hgsc.bcm.edu	hg19	2	220194381	220194381	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	RESP18	NM_001007089	exon4	c.T443A	p.L148H	GGGAAAAGTGCCT	.	114.0	27.0	87.0	0.0	.	13	.	.	Atlas-SNP
EPHA4	2043	hgsc.bcm.edu	hg19	2	222365815	222365815	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	EPHA4	NM_004438	exon4	c.T901A	p.W301R	CTTCCCAGACAGA	.	66.0	10.0	55.0	0.0	.	263	.	.	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	hg19	3	4726008	4726008	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ITPR1	NM_001099952	exon29	c.A3515T	p.Y1172F	GCAGCTACAACTA	.	119.0	19.0	64.0	0.0	.	659	.	.	Atlas-SNP
BRPF1	7862	hgsc.bcm.edu	hg19	3	9784748	9784748	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	BRPF1	NM_001003694	exon7	c.A2122T	p.S708C	ATCGTCAGCAACT	.	172.0	52.0	135.0	0.0	.	104	.	.	Atlas-SNP
ZNF619	285267	hgsc.bcm.edu	hg19	3	40529425	40529425	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ZNF619	NM_001145082	exon6	c.A1544T	p.Q515L	AGCATCAGAAGTG	.	105.0	39.0	83.0	0.0	.	57	.	.	Atlas-SNP
NEK4	6787	hgsc.bcm.edu	hg19	3	52794925	52794925	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	NEK4	NM_003157	exon6	c.T849C	p.N283N	GTCACCATTTTTA	.	75.0	20.0	61.0	0.0	.	51	.	.	Atlas-SNP
SPICE1	152185	hgsc.bcm.edu	hg19	3	113218394	113218394	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SPICE1	NM_144718	exon4	c.A183T	p.R61S	TAATGCTCTATTC	.	103.0	43.0	74.0	0.0	.	130	.	.	Atlas-SNP
ARHGAP31	57514	hgsc.bcm.edu	hg19	3	119133709	119133709	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ARHGAP31	NM_020754	exon12	c.T2933A	p.L978H	CTAATCTTGAAAC	.	107.0	32.0	66.0	0.0	.	175	.	.	Atlas-SNP
TMEM39A	55254	hgsc.bcm.edu	hg19	3	119156670	119156670	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	TMEM39A	NM_018266	exon6	c.A856T	p.K286X	CCTCCTTGATTCT	.	173.0	36.0	107.0	0.0	.	36	.	.	Atlas-SNP
POLQ	10721	hgsc.bcm.edu	hg19	3	121208682	121208682	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	POLQ	NM_199420	exon16	c.A3096T	p.S1032S	CTTTTCTGAATTG	.	89.0	15.0	57.0	0.0	.	273	.	.	Atlas-SNP
IGSF10	285313	hgsc.bcm.edu	hg19	3	151171236	151171236	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	IGSF10	NM_178822	exon3	c.T651A	p.H217Q	GTTTCCATGCAGG	.	177.0	32.0	148.0	0.0	.	279	.	.	Atlas-SNP
PLCH1	23007	hgsc.bcm.edu	hg19	3	155198967	155198967	+	Silent	SNP	A	A	T	rs201081912	bycluster;by1000genomes;alternate_allele	TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PLCH1	NM_001130960	exon23	c.T4872A	p.P1624P	CACTGCAGGGGTG	.	163.0	62.0	117.0	0.0	.	406	.	A|0.999;G|0.001	Atlas-SNP
GMPS	8833	hgsc.bcm.edu	hg19	3	155640020	155640020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	GMPS	NM_003875	exon11	c.A1363G	p.I455V	CCTTATATTTGTA	.	539.0	179.0	357.0	0.0	.	70	.	.	Atlas-SNP
OPA1	4976	hgsc.bcm.edu	hg19	3	193353249	193353249	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	OPA1	NM_130837	exon9	c.A886T	p.K296X	GAGAACAAAGAAT	.	340.0	89.0	230.0	0.0	.	79	.	.	Atlas-SNP
UBXN7	26043	hgsc.bcm.edu	hg19	3	196096315	196096315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	UBXN7	NM_015562	exon7	c.T683C	p.V228A	ATGGAAACATAGG	.	94.0	20.0	54.0	0.0	.	43	.	.	Atlas-SNP
FBXO45	200933	hgsc.bcm.edu	hg19	3	196296086	196296086	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	FBXO45	NM_001105573	exon1	c.G231C	p.E77D	CAGCGAGGTGTGG	.	84.0	19.0	59.0	0.0	.	18	.	.	Atlas-SNP
IQCG	84223	hgsc.bcm.edu	hg19	3	197640825	197640825	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	IQCG	NM_032263	exon8	c.A815T	p.N272I	TCGGTATTGGTTT	.	127.0	34.0	114.0	0.0	.	44	.	.	Atlas-SNP
OTOP1	133060	hgsc.bcm.edu	hg19	4	4228281	4228281	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	OTOP1	NM_177998	exon1	c.T311A	p.L104Q	CACAGCAGCTGCA	.	44.0	11.0	39.0	0.0	.	118	.	.	Atlas-SNP
ATP10D	57205	hgsc.bcm.edu	hg19	4	47548881	47548881	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ATP10D	NM_020453	exon10	c.1635+2T>C	.	CCATTGTAAGTAT	.	88.0	10.0	76.0	0.0	.	168	.	.	Atlas-SNP
UGT2B17	7367	hgsc.bcm.edu	hg19	4	69434019	69434019	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	UGT2B17	NM_001077	exon1	c.A184T	p.I62F	CAAGAATAGAAGC	.	219.0	103.0	203.0	0.0	.	34	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	hg19	4	88536436	88536436	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	DSPP	NM_014208	exon5	c.C2622T	p.S874S	CAGCAGCAACAGC	.	188.0	19.0	205.0	0.0	.	174	.	.	Atlas-SNP
MMRN1	22915	hgsc.bcm.edu	hg19	4	90857648	90857648	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	MMRN1	NM_007351	exon6	c.A2817T	p.S939S	TGTGTCAGAACTG	.	81.0	15.0	95.0	0.0	.	174	.	.	Atlas-SNP
EGF	1950	hgsc.bcm.edu	hg19	4	110882063	110882063	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	EGF	NM_001963	exon7	c.T1107A	p.L369L	TACTCTTGGGTGT	.	108.0	30.0	116.0	0.0	.	113	.	.	Atlas-SNP
MYOZ2	51778	hgsc.bcm.edu	hg19	4	120072181	120072181	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	MYOZ2	NM_016599	exon3	c.T231A	p.S77S	TCAATCTAGAGCA	.	77.0	14.0	95.0	0.0	.	34	.	.	Atlas-SNP
BBS7	55212	hgsc.bcm.edu	hg19	4	122789150	122789150	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	BBS7	NM_018190	exon2	c.A88T	p.R30X	TAGCTCTGTGTCT	.	89.0	27.0	80.0	0.0	.	61	.	.	Atlas-SNP
PCDH18	54510	hgsc.bcm.edu	hg19	4	138442493	138442493	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PCDH18	NM_019035	exon4	c.A3098T	p.N1033I	AGGGAGTTGGACC	.	97.0	30.0	98.0	0.0	.	229	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155156629	155156629	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	DCHS2	NM_017639	exon25	c.A7810T	p.S2604C	CGTTACTGCAGTC	.	62.0	20.0	80.0	0.0	.	594	.	.	Atlas-SNP
ANP32C	23520	hgsc.bcm.edu	hg19	4	165118291	165118291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ANP32C	NM_012403	exon1	c.G573T	p.E191D	TTCCTCCTCCTCC	.	72.0	25.0	71.0	0.0	.	59	.	.	Atlas-SNP
ADCY2	108	hgsc.bcm.edu	hg19	5	7707845	7707845	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ADCY2	NM_020546	exon9	c.T1295A	p.L432Q	TCACCCTGGAGCA	.	118.0	24.0	97.0	0.0	.	337	.	.	Atlas-SNP
CTNND2	1501	hgsc.bcm.edu	hg19	5	11385034	11385034	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CTNND2	NM_001332	exon7	c.T920A	p.L307Q	TTGGCCAGGCGGC	.	39.0	6.0	24.0	0.0	.	289	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13716756	13716756	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	DNAH5	NM_001369	exon74	c.A12749T	p.Q4250L	CCATATTGAATCT	.	86.0	24.0	64.0	0.0	.	868	.	.	Atlas-SNP
CDH18	1016	hgsc.bcm.edu	hg19	5	19483513	19483513	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CDH18	NM_004934	exon12	c.A1779C	p.R593S	CCCATCTCTCTCG	.	171.0	43.0	133.0	0.0	.	561	.	.	Atlas-SNP
CDH6	1004	hgsc.bcm.edu	hg19	5	31322954	31322954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CDH6	NM_004932	exon12	c.C1912T	p.R638W	CTGAGGCGGCAGC	.	114.0	27.0	73.0	0.0	.	175	.	.	Atlas-SNP
DROSHA	29102	hgsc.bcm.edu	hg19	5	31472271	31472271	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	DROSHA	NM_013235	exon16	c.G2140C	p.V714L	CAGGCACCAGGGC	.	184.0	42.0	136.0	0.0	.	130	.	.	Atlas-SNP
NIPBL	25836	hgsc.bcm.edu	hg19	5	37049313	37049313	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	NIPBL	NM_015384	exon40	c.G6864A	p.E2288E	GCTTGAGGCATTT	.	136.0	30.0	92.0	0.0	.	513	.	.	Atlas-SNP
MOCS2	4338	hgsc.bcm.edu	hg19	5	52404403	52404403	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	MOCS2	NM_176806	exon2	c.A89T	p.Q30L	ATTTCTTGAGGCA	.	87.0	20.0	51.0	0.0	.	28	.	.	Atlas-SNP
IPO11	51194	hgsc.bcm.edu	hg19	5	61833050	61833050	+	Silent	SNP	T	T	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	IPO11	NM_001134779	exon24	c.T2304G	p.G768G	AGTAGGTCTATGC	.	198.0	40.0	172.0	0.0	.	76	.	.	Atlas-SNP
ELL2	22936	hgsc.bcm.edu	hg19	5	95249476	95249476	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ELL2	NM_012081	exon4	c.A480T	p.V160V	CAAACCTACATAT	.	71.0	20.0	77.0	0.0	.	63	.	.	Atlas-SNP
PPP2CA	5515	hgsc.bcm.edu	hg19	5	133534792	133534792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PPP2CA	NM_002715	exon6	c.C842A	p.T281N	TTTAGAGTATCGT	.	85.0	18.0	65.0	0.0	.	29	.	.	Atlas-SNP
SAR1B	51128	hgsc.bcm.edu	hg19	5	133945262	133945262	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SAR1B	NM_001033503	exon6	c.A347C	p.D116A	CTTACATCAAGTT	.	107.0	21.0	67.0	0.0	.	19	.	.	Atlas-SNP
TRPC7	57113	hgsc.bcm.edu	hg19	5	135651458	135651458	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	TRPC7	NM_020389	exon3	c.A790T	p.R264W	ACTTCCTGTAATC	.	89.0	24.0	100.0	0.0	.	126	.	.	Atlas-SNP
PCDHA1	56147	hgsc.bcm.edu	hg19	5	140165998	140165998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PCDHA1	NM_031411	exon1	c.C123A	p.H41Q	CAAACACGGCACC	.	117.0	22.0	93.0	0.0	.	387	.	.	Atlas-SNP
PCDHA2	56146	hgsc.bcm.edu	hg19	5	140175983	140175983	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PCDHA2	NM_031495	exon1	c.A1434T	p.S478S	GGTGTCAGCGTGG	.	185.0	36.0	175.0	0.0	.	404	.	.	Atlas-SNP
PCDHA6	56142	hgsc.bcm.edu	hg19	5	140208516	140208516	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PCDHA6	NM_018909	exon1	c.T840A	p.S280S	ATATTCTTTTAAT	.	478.0	112.0	353.0	0.0	.	442	.	.	Atlas-SNP
PCDHB5	26167	hgsc.bcm.edu	hg19	5	140515388	140515388	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PCDHB5	NM_015669	exon1	c.A372T	p.T124T	GCTCACAGATATA	.	147.0	37.0	126.0	0.0	.	184	.	.	Atlas-SNP
PCDHB6	56130	hgsc.bcm.edu	hg19	5	140530514	140530514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PCDHB6	NM_018939	exon1	c.G676A	p.E226K	ACCTCCGAGATTC	.	143.0	30.0	116.0	0.0	.	161	.	.	Atlas-SNP
PCDHGA8	9708	hgsc.bcm.edu	hg19	5	140773294	140773294	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PCDHGA8	NM_014004	exon1	c.A914T	p.K305I	TAGCAAAAAGTCT	.	260.0	54.0	191.0	0.0	.	146	.	.	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150905451	150905451	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.,2	FAT2	NM_001447	exon17	c.T10384A	p.Y3462N	ACGAGTAGGGGGG	.	73.0	14.0	51.0	0.0	.	465	.	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	hg19	5	169482326	169482326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	DOCK2	NM_004946	exon42	c.G4231A	p.V1411I	TTCACTGTCCAGC	.	96.0	24.0	75.0	0.0	.	389	.	.	Atlas-SNP
LY86	9450	hgsc.bcm.edu	hg19	6	6589096	6589096	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	LY86	NM_004271	exon1	c.G129C	p.Q43H	CTACCAGAGTTGC	.	65.0	9.0	49.0	0.0	.	18	.	.	Atlas-SNP
HIST1H4C	8364	hgsc.bcm.edu	hg19	6	26104224	26104224	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	HIST1H4C	NM_003542	exon1	c.A49T	p.K17X	GGTGCTAAGCGCC	.	72.0	18.0	92.0	0.0	.	14	.	.	Atlas-SNP
HIST1H2BL	8340	hgsc.bcm.edu	hg19	6	27775503	27775503	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	HIST1H2BL	NM_003519	exon1	c.G182T	p.G61V	ATGATTCCCATGG	.	142.0	27.0	119.0	0.0	.	48	.	.	Atlas-SNP
OR2H1	26716	hgsc.bcm.edu	hg19	6	29429803	29429803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	OR2H1	NM_030883	exon3	c.C257A	p.P86Q	GGGGCCCAAAGAA	.	74.0	18.0	80.0	0.0	.	38	.	.	Atlas-SNP
GABBR1	2550	hgsc.bcm.edu	hg19	6	29574219	29574219	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	GABBR1	NM_001470	exon19	c.A2260T	p.I754F	GCAGAATAGAGAC	.	89.0	21.0	76.0	0.0	.	95	.	.	Atlas-SNP
GABBR1	2550	hgsc.bcm.edu	hg19	6	29574242	29574242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	GABBR1	NM_001470	exon19	c.C2237T	p.P746L	TCCTTAGGTTCCT	.	89.0	18.0	77.0	0.0	.	95	.	.	Atlas-SNP
GRM4	2914	hgsc.bcm.edu	hg19	6	34003952	34003952	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	GRM4	NM_000841	exon9	c.T1935A	p.A645A	GGGCTCAGCGATC	.	82.0	18.0	74.0	0.0	.	317	.	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38749117	38749117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	DNAH8	NM_001206927	exon16	c.C2227T	p.R743C	CTCTATCGCCGGA	.	240.0	65.0	192.0	0.0	.	1239	.	.	Atlas-SNP
TREML2	79865	hgsc.bcm.edu	hg19	6	41162396	41162396	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	TREML2	NM_024807	exon3	c.T552A	p.P184P	GGAGGCAGGTCTG	.	138.0	30.0	124.0	0.0	.	41	.	.	Atlas-SNP
NCR2	9436	hgsc.bcm.edu	hg19	6	41309624	41309624	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	NCR2	NM_004828	exon3	c.A487T	p.R163X	GGAGCCAGACAAG	.	81.0	19.0	44.0	0.0	.	44	.	.	Atlas-SNP
KLC4	89953	hgsc.bcm.edu	hg19	6	43038459	43038459	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	KLC4	NM_201523	exon8	c.A1065T	p.A355A	TGTGGCAAAACAG	.	154.0	37.0	141.0	0.0	.	89	.	.	Atlas-SNP
TDRD6	221400	hgsc.bcm.edu	hg19	6	46661686	46661686	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	TDRD6	NM_001168359	exon1	c.A5821T	p.R1941X	GACATGAGAAAGT	.	237.0	60.0	156.0	0.0	.	205	.	.	Atlas-SNP
IL17F	112744	hgsc.bcm.edu	hg19	6	52103728	52103728	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	IL17F	NM_052872	exon2	c.G54A	p.S18S	CAATATCGACAGC	.	129.0	25.0	105.0	0.0	.	28	.	.	Atlas-SNP
COL9A1	1297	hgsc.bcm.edu	hg19	6	70942395	70942395	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	COL9A1	NM_001851	exon36	c.T2394A	p.P798P	GGGACCAGGAGGG	.	323.0	67.0	268.0	0.0	.	228	.	.	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	hg19	6	72968769	72968769	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	RIMS1	NM_014989	exon18	c.A3008T	p.H1003L	TTGATCATAGAAC	.	99.0	22.0	89.0	0.0	.	278	.	.	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75893246	75893246	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	COL12A1	NM_004370	exon10	c.G1411T	p.E471X	AAATTTCAAAACT	.	311.0	75.0	254.0	0.0	.	385	.	.	Atlas-SNP
HTR1E	3354	hgsc.bcm.edu	hg19	6	87725224	87725224	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	HTR1E	NM_000865	exon2	c.A172T	p.N58Y	CCTGCCAACTACC	.	152.0	30.0	123.0	0.0	.	89	.	.	Atlas-SNP
RNGTT	8732	hgsc.bcm.edu	hg19	6	89600237	89600237	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	RNGTT	NM_003800	exon8	c.A873T	p.V291V	CCAGCTTACTTTG	.	77.0	21.0	61.0	0.0	.	52	.	.	Atlas-SNP
PNISR	25957	hgsc.bcm.edu	hg19	6	99849420	99849420	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PNISR	NM_015491	exon11	c.A1414T	p.R472X	CTTCTCTTGCTTC	.	70.0	13.0	86.0	0.0	.	74	.	.	Atlas-SNP
DSE	29940	hgsc.bcm.edu	hg19	6	116757981	116757981	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	DSE	NM_001080976	exon6	c.A2350T	p.R784X	GATAAGAGACAGA	.	153.0	33.0	130.0	0.0	.	98	.	.	Atlas-SNP
CTGF	1490	hgsc.bcm.edu	hg19	6	132270673	132270673	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CTGF	NM_001901	exon5	c.A781T	p.K261X	AGATTTTGGGAGT	.	92.0	19.0	83.0	0.0	.	36	.	.	Atlas-SNP
TAGAP	117289	hgsc.bcm.edu	hg19	6	159459160	159459160	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	TAGAP	NM_054114	exon9	c.A884T	p.H295L	TCAGTGTGCTCCA	.	106.0	20.0	85.0	0.0	.	75	.	.	Atlas-SNP
C6orf118	168090	hgsc.bcm.edu	hg19	6	165715248	165715248	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	C6orf118	NM_144980	exon2	c.A563T	p.Q188L	GCCTCCTGGTAGC	.	72.0	19.0	89.0	0.0	.	116	.	.	Atlas-SNP
SDK1	221935	hgsc.bcm.edu	hg19	7	3658710	3658710	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SDK1	NM_152744	exon2	c.299-2A>T	.	TATTTCAGATGAT	.	125.0	30.0	142.0	0.0	.	361	.	.	Atlas-SNP
KLHL7	55975	hgsc.bcm.edu	hg19	7	23164366	23164366	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	KLHL7	NM_001172428	exon3	c.A283T	p.I95F	GATATTATTGAAC	.	84.0	33.0	86.0	0.0	.	102	.	.	Atlas-SNP
HOXA10	3206	hgsc.bcm.edu	hg19	7	27211677	27211677	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	HOXA10	NM_018951	exon2	c.T1074C	p.N358N	GTACATATTGAAC	.	146.0	38.0	124.0	0.0	.	55	.	.	Atlas-SNP
NPSR1	387129	hgsc.bcm.edu	hg19	7	34889208	34889208	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	NPSR1,NS,carcinoma,0,1	NPSR1	NM_207172	exon9	c.T1057G	p.F353V	ATGACGTTCCGGG	.	144.0	36.0	145.0	0.0	.	134	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48550698	48550698	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ABCA13	NM_152701	exon51	c.G13543C	p.V4515L	GTTTCCGTCTGCC	.	79.0	18.0	62.0	0.0	.	1192	.	.	Atlas-SNP
COBL	23242	hgsc.bcm.edu	hg19	7	51095925	51095925	+	Silent	SNP	G	G	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	COBL	NM_015198	exon10	c.C2868G	p.G956G	GTGTGGGCCAATG	.	135.0	25.0	108.0	0.0	.	167	.	.	Atlas-SNP
ZNF107	51427	hgsc.bcm.edu	hg19	7	64167010	64167010	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ZNF107	NM_016220	exon7	c.A328T	p.S110C	GAATGTAGCAAAT	.	178.0	29.0	151.0	0.0	.	107	.	.	Atlas-SNP
LAT2	7462	hgsc.bcm.edu	hg19	7	73639059	73639059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	LAT2	NM_032464	exon13	c.C719A	p.A240D	TGGCAGCCACAGA	.	85.0	23.0	56.0	0.0	.	24	.	.	Atlas-SNP
PTPN12	5782	hgsc.bcm.edu	hg19	7	77256052	77256052	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PTPN12	NM_002835	exon13	c.A1056C	p.E352D	AGAAGAAATACTG	.	93.0	25.0	76.0	0.0	.	83	.	.	Atlas-SNP
GNAT3	346562	hgsc.bcm.edu	hg19	7	80117908	80117908	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	GNAT3	NM_001102386	exon3	c.A246T	p.L82L	AATAGCTAGGATG	.	80.0	18.0	72.0	0.0	.	65	.	.	Atlas-SNP
HGF	3082	hgsc.bcm.edu	hg19	7	81331975	81331975	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	HGF	NM_000601	exon18	c.T2109A	p.P703P	AATACCAGGACGA	.	357.0	78.0	280.0	0.0	.	171	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82595396	82595396	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PCLO	NM_014510	exon4	c.A3708T	p.L1236L	TTCTTCTAGGAGT	.	179.0	41.0	127.0	0.0	.	1506	.	.	Atlas-SNP
COL1A2	1278	hgsc.bcm.edu	hg19	7	94053728	94053728	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	COL1A2	NM_000089	exon41	c.T2646C	p.R882R	TGAACGTGGTCTA	.	95.0	18.0	72.0	0.0	.	240	.	.	Atlas-SNP
LHFPL3	375612	hgsc.bcm.edu	hg19	7	103969251	103969251	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	LHFPL3,NS,carcinoma,0,1	LHFPL3	NM_199000	exon1	c.C24T	p.A8A	CGCTGCCGCCGCC	.	45.0	2.0	31.0	1.0	.	24	.	.	Atlas-SNP
CDHR3	222256	hgsc.bcm.edu	hg19	7	105653379	105653379	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CDHR3	NM_152750	exon9	c.A1126T	p.S376C	GATGACAGTGAGG	.	135.0	37.0	99.0	0.0	.	153	.	.	Atlas-SNP
WNT2	7472	hgsc.bcm.edu	hg19	7	116960675	116960675	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	WNT2	NM_003391	exon2	c.A256T	p.N86Y	TGCAATTCCAGCG	.	91.0	20.0	63.0	0.0	.	56	.	.	Atlas-SNP
NDUFA5	4698	hgsc.bcm.edu	hg19	7	123190558	123190558	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	NDUFA5	NM_005000	exon3	c.A149T	p.Q50L	GTAATCTGTTCTG	.	76.0	19.0	46.0	0.0	.	6	.	.	Atlas-SNP
METTL2B	55798	hgsc.bcm.edu	hg19	7	128141930	128141930	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	METTL2B	NM_018396	exon9	c.A1097T	p.Q366L	GGATTCAGTGCAA	.	194.0	36.0	126.0	0.0	.	34	.	.	Atlas-SNP
PLXNA4	91584	hgsc.bcm.edu	hg19	7	131833393	131833393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PLXNA4	NM_020911	exon26	c.G4673A	p.G1558E	CCACTTCCTTGTC	.	42.0	8.0	53.0	0.0	.	873	.	.	Atlas-SNP
EXOC4	60412	hgsc.bcm.edu	hg19	7	133749242	133749242	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	EXOC4	NM_021807	exon18	c.C2886A	p.I962I	TGCCATCAAGCAA	.	32.0	8.0	32.0	0.0	.	118	.	.	Atlas-SNP
WDR91	29062	hgsc.bcm.edu	hg19	7	134894482	134894482	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	WDR91	NM_014149	exon2	c.A149T	p.Q50L	AACTGCTGCAGCT	.	98.0	24.0	74.0	0.0	.	82	.	.	Atlas-SNP
PRSS58	136541	hgsc.bcm.edu	hg19	7	141952124	141952124	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PRSS58	NM_001001317	exon6	c.T643A	p.C215S	AAACACATCCATC	.	149.0	42.0	131.0	0.0	.	41	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	3266978	3266978	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CSMD1	NM_033225	exon13	c.A1711T	p.N571Y	ACTGATTGTTCTG	.	92.0	14.0	84.0	0.0	.	1469	.	.	Atlas-SNP
MCPH1	79648	hgsc.bcm.edu	hg19	8	6266840	6266840	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	MCPH1	NM_001172575	exon2	c.A63T	p.T21T	TGGAACAGAAAAT	.	102.0	17.0	74.0	0.0	.	65	.	.	Atlas-SNP
PTK2B	2185	hgsc.bcm.edu	hg19	8	27294711	27294711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PTK2B	NM_173174	exon21	c.A1414G	p.M472V	AAGTTCATGAGCG	.	83.0	21.0	85.0	0.0	.	304	.	.	Atlas-SNP
EXTL3	2137	hgsc.bcm.edu	hg19	8	28574021	28574021	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	EXTL3	NM_001440	exon3	c.A445T	p.N149Y	GCCCAGAACCAGC	.	66.0	16.0	57.0	0.0	.	83	.	.	Atlas-SNP
DUSP4	1846	hgsc.bcm.edu	hg19	8	29195843	29195843	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	DUSP4	NM_001394	exon3	c.A755T	p.K252M	TCGGCCTTGTGGT	.	115.0	19.0	107.0	0.0	.	58	.	.	Atlas-SNP
KCNU1	157855	hgsc.bcm.edu	hg19	8	36768468	36768468	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	KCNU1	NM_001031836	exon22	c.A2352T	p.G784G	TTCTGGAGACCTC	.	38.0	13.0	32.0	0.0	.	359	.	.	Atlas-SNP
ST18	9705	hgsc.bcm.edu	hg19	8	53044593	53044593	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ST18	NM_014682	exon22	c.A2591T	p.Q864L	AGCTCTTGTTTGT	.	135.0	34.0	114.0	0.0	.	212	.	.	Atlas-SNP
SULF1	23213	hgsc.bcm.edu	hg19	8	70501222	70501222	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SULF1	NM_001128205	exon8	c.T580A	p.L194I	ACAGACTTAATCA	.	157.0	28.0	141.0	0.0	.	153	.	.	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	hg19	8	110439372	110439372	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PKHD1L1	NM_177531	exon25	c.A2987T	p.Q996L	GAAAGCAGAATCT	.	84.0	25.0	103.0	0.0	.	522	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113585883	113585883	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CSMD3	NM_198123	exon24	c.T3889A	p.Y1297N	CATCATAAATCTG	.	81.0	12.0	56.0	0.0	.	2325	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113585884	113585884	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CSMD3	NM_198123	exon24	c.T3888A	p.I1296I	ATCATAAATCTGC	.	80.0	12.0	56.0	0.0	.	2325	.	.	Atlas-SNP
TAF2	6873	hgsc.bcm.edu	hg19	8	120809963	120809963	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	TAF2	NM_003184	exon7	c.A916T	p.T306S	AGACAGTCTTAAA	.	108.0	37.0	67.0	0.0	.	204	.	.	Atlas-SNP
GSDMC	56169	hgsc.bcm.edu	hg19	8	130774950	130774950	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	GSDMC	NM_031415	exon5	c.G598C	p.V200L	TCTTCACTCTGAG	.	79.0	11.0	41.0	0.0	.	71	.	.	Atlas-SNP
ADCY8	114	hgsc.bcm.edu	hg19	8	131896933	131896933	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ADCY8	NM_001115	exon8	c.T1986A	p.S662S	AGGCCCAGACTGG	.	153.0	23.0	118.0	0.0	.	291	.	.	Atlas-SNP
GLI4	2738	hgsc.bcm.edu	hg19	8	144358897	144358897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	GLI4	NM_138465	exon4	c.G1054T	p.A352S	CCCTTCGCGTGTG	.	86.0	25.0	87.0	0.0	.	28	.	.	Atlas-SNP
SLC24A2	25769	hgsc.bcm.edu	hg19	9	19786279	19786279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SLC24A2	NM_001193288	exon1	c.G586T	p.V196L	TAAATACCCCTAT	.	86.0	17.0	49.0	0.0	.	93	.	.	Atlas-SNP
ANKRD18B	441459	hgsc.bcm.edu	hg19	9	33550549	33550549	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ANKRD18B	NM_001244752	exon10	c.A2000T	p.K667M	CTTCAAAGAAGAA	.	271.0	68.0	242.0	0.0	.	46	.	.	Atlas-SNP
UBAP2	55833	hgsc.bcm.edu	hg19	9	33927030	33927030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	UBAP2	NM_018449	exon21	c.A2420G	p.N807S	TACTGGTTGTGCA	.	40.0	12.0	52.0	0.0	.	82	.	.	Atlas-SNP
AGTPBP1	23287	hgsc.bcm.edu	hg19	9	88247600	88247600	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	AGTPBP1	NM_015239	exon14	c.A1872T	p.L624F	CCTTTCTAAAATA	.	124.0	30.0	84.0	0.0	.	128	.	.	Atlas-SNP
ROR2	4920	hgsc.bcm.edu	hg19	9	94486744	94486744	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ROR2	NM_004560	exon9	c.T2032A	p.Y678N	CACCGTAGGACCA	.	74.0	17.0	64.0	0.0	.	167	.	.	Atlas-SNP
ROR2	4920	hgsc.bcm.edu	hg19	9	94495465	94495465	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ROR2	NM_004560	exon6	c.T876A	p.P292P	GCTCTCAGGCATG	.	104.0	27.0	88.0	0.0	.	167	.	.	Atlas-SNP
OR1J1	347168	hgsc.bcm.edu	hg19	9	125240200	125240200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	OR1J1	NM_001004451	exon1	c.C6A	p.S2R	CTCAGGGCTCATG	.	121.0	24.0	88.0	0.0	.	46	.	.	Atlas-SNP
RALGDS	5900	hgsc.bcm.edu	hg19	9	135977865	135977865	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	RALGDS	NM_006266	exon14	c.C2007T	p.S669S	TTACTCGCTCCAG	.	26.0	4.0	28.0	0.0	.	75	.	.	Atlas-SNP
PTER	9317	hgsc.bcm.edu	hg19	10	16547129	16547129	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PTER	NM_030664	exon5	c.A809G	p.D270G	ATATTGACATGCC	.	108.0	26.0	85.0	0.0	.	40	.	.	Atlas-SNP
ANKRD26	22852	hgsc.bcm.edu	hg19	10	27306542	27306542	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ANKRD26	NM_014915	exon30	c.A4395T	p.I1465I	CCTTTCTATATGA	.	133.0	33.0	74.0	0.0	.	179	.	.	Atlas-SNP
ANKRD26	22852	hgsc.bcm.edu	hg19	10	27337852	27337852	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ANKRD26	NM_014915	exon17	c.A1692T	p.I564I	ATCATGTATGTTT	.	76.0	20.0	53.0	0.0	.	179	.	.	Atlas-SNP
ADAMTS14	140766	hgsc.bcm.edu	hg19	10	72434384	72434384	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ADAMTS14	NM_080722	exon2	c.T155A	p.F52Y	GACGCTTCCTCTC	.	35.0	10.0	35.0	0.0	.	148	.	.	Atlas-SNP
ZSWIM8	23053	hgsc.bcm.edu	hg19	10	75551724	75551724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	.	NM_001242488	exon10	c.G1427T	p.R476L	GCTTCCGGCCAGC	.	139.0	29.0	90.0	0.0	.	.	.	.	Atlas-SNP
KCNMA1	3778	hgsc.bcm.edu	hg19	10	79397295	79397295	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	KCNMA1	NM_001161352	exon1	c.C106T	p.L36L	CGTCTAGGCTGAG	.	352.0	79.0	247.0	0.0	.	370	.	.	Atlas-SNP
OPN4	94233	hgsc.bcm.edu	hg19	10	88414684	88414684	+	Silent	SNP	A	A	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	OPN4	NM_033282	exon1	c.A144C	p.T48T	TCCCACAGTAAGC	.	61.0	13.0	45.0	0.0	.	61	.	.	Atlas-SNP
IDE	3416	hgsc.bcm.edu	hg19	10	94267964	94267964	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	IDE	NM_004969	exon9	c.1061-2A>T	.	CCAGCCTGCAACA	.	283.0	57.0	211.0	0.0	.	77	.	.	Atlas-SNP
NOC3L	64318	hgsc.bcm.edu	hg19	10	96116932	96116932	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	NOC3L	NM_022451	exon4	c.A507T	p.P169P	CTCACCTGGCTTC	.	132.0	24.0	87.0	0.0	.	67	.	.	Atlas-SNP
BTRC	8945	hgsc.bcm.edu	hg19	10	103296339	103296339	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	BTRC	NM_033637	exon12	c.A1506T	p.L502F	AGTGTTAGAAGGC	.	111.0	21.0	96.0	0.0	.	64	.	.	Atlas-SNP
FAM204A	63877	hgsc.bcm.edu	hg19	10	120070409	120070409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	FAM204A	NM_001134672	exon8	c.A662G	p.K221R	CTCTTCTTTGCTT	.	56.0	11.0	38.0	0.0	.	20	.	.	Atlas-SNP
RGS10	6001	hgsc.bcm.edu	hg19	10	121275042	121275042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	RGS10	NM_001005339	exon4	c.G378A	p.M126I	CTGGAACATCAGA	.	153.0	38.0	119.0	0.0	.	14	.	.	Atlas-SNP
WDR11	55717	hgsc.bcm.edu	hg19	10	122650234	122650234	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	WDR11	NM_018117	exon19	c.A2350C	p.M784L	GTTCAGATGGTGA	.	93.0	15.0	77.0	0.0	.	95	.	.	Atlas-SNP
STK32C	282974	hgsc.bcm.edu	hg19	10	134022595	134022595	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	STK32C	NM_173575	exon11	c.A1262G	p.Y421C	TGAAGATAGTCAT	.	95.0	22.0	77.0	0.0	.	61	.	.	Atlas-SNP
B4GALNT4	338707	hgsc.bcm.edu	hg19	11	379652	379652	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	B4GALNT4	NM_178537	exon15	c.A2439T	p.P813P	CCGGCCACTGCGC	.	75.0	19.0	55.0	0.0	.	83	.	.	Atlas-SNP
OR51E1	143503	hgsc.bcm.edu	hg19	11	4674516	4674516	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	OR51E1	NM_152430	exon2	c.T760A	p.Y254N	ATATTCTATGTAC	.	63.0	19.0	52.0	0.0	.	67	.	.	Atlas-SNP
FAR1	84188	hgsc.bcm.edu	hg19	11	13721881	13721881	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	FAR1	NM_032228	exon3	c.A207T	p.R69S	ATTGAGAGATGAA	.	322.0	71.0	229.0	0.0	.	40	.	.	Atlas-SNP
MRGPRX1	259249	hgsc.bcm.edu	hg19	11	18955672	18955672	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	MRGPRX1	NM_147199	exon1	c.C660A	p.L220L	TACTGTGAGCAGG	.	70.0	9.0	62.0	0.0	.	84	.	.	Atlas-SNP
CD44	960	hgsc.bcm.edu	hg19	11	35223290	35223290	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CD44	NM_000610	exon9	c.A1109T	p.H370L	TTCACCATGAGCA	.	131.0	31.0	91.0	0.0	.	48	.	.	Atlas-SNP
RAG1	5896	hgsc.bcm.edu	hg19	11	36595110	36595110	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	RAG1	NM_000448	exon2	c.A256T	p.K86X	CACCCTAAGTTTT	.	149.0	40.0	151.0	0.0	.	151	.	.	Atlas-SNP
RAG2	5897	hgsc.bcm.edu	hg19	11	36615073	36615073	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	RAG2	NM_001243785	exon3	c.A646T	p.I216F	TATAGATGGTGTC	.	86.0	12.0	54.0	0.0	.	92	.	.	Atlas-SNP
CKAP5	9793	hgsc.bcm.edu	hg19	11	46819392	46819392	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CKAP5	NM_001008938	exon11	c.A1301T	p.K434M	AAGCTCTTTGGCA	.	280.0	53.0	213.0	0.0	.	134	.	.	Atlas-SNP
FNBP4	23360	hgsc.bcm.edu	hg19	11	47744591	47744591	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	FNBP4,NS,carcinoma,0,1	FNBP4	NM_015308	exon15	c.T2742A	p.P914P	TGGTGGAGGAGGA	.	34.0	4.0	46.0	0.0	.	99	.	.	Atlas-SNP
OR5D13	390142	hgsc.bcm.edu	hg19	11	55541071	55541071	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	OR5D13	NM_001001967	exon1	c.T158A	p.L53H	TCAGACTCAATTC	.	121.0	35.0	138.0	0.0	.	96	.	.	Atlas-SNP
OR5T2	219464	hgsc.bcm.edu	hg19	11	56000215	56000215	+	Silent	SNP	T	T	A	rs369632317	alternate_allele	TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	OR5T2	NM_001004746	exon1	c.A447T	p.T149T	GCATTCTGTGGTT	.	102.0	27.0	93.0	0.0	.	107	.	.	Atlas-SNP
TNKS1BP1	85456	hgsc.bcm.edu	hg19	11	57076311	57076311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	TNKS1BP1	NM_033396	exon6	c.C3874T	p.P1292S	CCCCTGGGGCCAT	.	40.0	6.0	45.0	0.0	.	148	.	.	Atlas-SNP
DTX4	23220	hgsc.bcm.edu	hg19	11	58940270	58940270	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	DTX4	NM_015177	exon1	c.C202G	p.Q68E	TTCCGCCAAGACA	.	127.0	33.0	106.0	0.0	.	84	.	.	Atlas-SNP
MS4A3	932	hgsc.bcm.edu	hg19	11	59828780	59828780	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	MS4A3	NM_001031809	exon2	c.A147C	p.Q49H	ATTACAAGTTCTT	.	89.0	16.0	70.0	0.0	.	47	.	.	Atlas-SNP
MS4A14	84689	hgsc.bcm.edu	hg19	11	60170383	60170383	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	MS4A14	NM_001261828	exon4	c.319-2A>T	.	TCTTTCAGGGTCA	.	87.0	15.0	54.0	0.0	.	120	.	.	Atlas-SNP
HRASLS5	117245	hgsc.bcm.edu	hg19	11	63235905	63235905	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	HRASLS5	NM_001146728	exon4	c.T408A	p.I136I	AATCTCAATCAGG	.	80.0	9.0	46.0	0.0	.	28	.	.	Atlas-SNP
ARHGEF17	9828	hgsc.bcm.edu	hg19	11	73066957	73066957	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ARHGEF17	NM_014786	exon5	c.A3622T	p.K1208X	ATGATCAAGCCTG	.	76.0	15.0	59.0	0.0	.	117	.	.	Atlas-SNP
NAALAD2	10003	hgsc.bcm.edu	hg19	11	89911262	89911262	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	NAALAD2	NM_005467	exon16	c.T1835A	p.L612X	AACAATTGACAGA	.	127.0	26.0	123.0	0.0	.	113	.	.	Atlas-SNP
MMP20	9313	hgsc.bcm.edu	hg19	11	102479781	102479781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	MMP20	NM_004771	exon5	c.G698T	p.G233V	GCCAGGCCCAGGG	.	109.0	29.0	92.0	0.0	.	52	.	.	Atlas-SNP
GRIA4	2893	hgsc.bcm.edu	hg19	11	105768993	105768993	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	GRIA4	NM_001077243	exon7	c.727-2A>T	.	TTTTATAGGGATT	.	165.0	35.0	130.0	0.0	.	380	.	.	Atlas-SNP
ANKK1	255239	hgsc.bcm.edu	hg19	11	113270966	113270966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ANKK1	NM_178510	exon8	c.C2275A	p.P759T	TCTAAGCCAGGAG	.	98.0	26.0	99.0	0.0	.	83	.	.	Atlas-SNP
DRD2	1813	hgsc.bcm.edu	hg19	11	113295219	113295219	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	DRD2	NM_016574	exon2	c.A155T	p.N52I	AGCACGTTGCCGA	.	85.0	17.0	98.0	0.0	.	98	.	.	Atlas-SNP
DSCAML1	57453	hgsc.bcm.edu	hg19	11	117299320	117299320	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	DSCAML1	NM_020693	exon33	c.T6066A	p.A2022A	GGCGGCAGCGGGG	.	128.0	24.0	79.0	0.0	.	286	.	.	Atlas-SNP
DSCAML1	57453	hgsc.bcm.edu	hg19	11	117375751	117375751	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	DSCAML1	NM_020693	exon10	c.T2250A	p.P750P	AAATCGAGGGGGC	.	70.0	10.0	66.0	0.0	.	286	.	.	Atlas-SNP
FOXR1	283150	hgsc.bcm.edu	hg19	11	118851924	118851924	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	FOXR1	NM_181721	exon6	c.T857A	p.M286K	ATGTGATGCCCTT	.	119.0	21.0	129.0	0.0	.	30	.	.	Atlas-SNP
CACNA1C	775	hgsc.bcm.edu	hg19	12	2800241	2800241	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CACNA1C	NM_199460	exon50	c.T6542A	p.V2181E	CCTTTGTGAACTG	.	143.0	30.0	117.0	0.0	.	1023	.	.	Atlas-SNP
MFAP5	8076	hgsc.bcm.edu	hg19	12	8813492	8813492	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	MFAP5	NM_003480	exon3	c.T61A	p.W21R	GTATCCAGTCTAT	.	149.0	31.0	135.0	0.0	.	34	.	.	Atlas-SNP
CNTN1	1272	hgsc.bcm.edu	hg19	12	41374784	41374784	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CNTN1	NM_001843	exon16	c.T1878A	p.R626R	GAGCCGTGGTTCA	.	77.0	17.0	71.0	0.0	.	207	.	.	Atlas-SNP
KRT81	3887	hgsc.bcm.edu	hg19	12	52680125	52680125	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	KRT81	NM_002281	exon9	c.T1432A	p.C478S	CTCCGCAGGTGGT	.	128.0	26.0	136.0	0.0	.	46	.	.	Atlas-SNP
KRT6A	3853	hgsc.bcm.edu	hg19	12	52883809	52883809	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	KRT6A	NM_005554	exon6	c.T1121A	p.L374Q	TTGCGCAGGTCGT	.	106.0	21.0	106.0	0.0	.	89	.	.	Atlas-SNP
AGAP2	116986	hgsc.bcm.edu	hg19	12	58127876	58127876	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	AGAP2	NM_001122772	exon5	c.T1482A	p.H494Q	CTGCCCATGGAGA	.	62.0	14.0	69.0	0.0	.	167	.	.	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	70965670	70965670	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PTPRB	NM_001109754	exon12	c.T3040A	p.Y1014N	CACTGTACAACCG	.	112.0	20.0	92.0	0.0	.	676	.	.	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	70989857	70989857	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PTPRB	NM_001109754	exon5	c.T1230A	p.S410S	TGAAAAAGAACGT	.	105.0	20.0	96.0	0.0	.	676	.	.	Atlas-SNP
PTPRQ	374462	hgsc.bcm.edu	hg19	12	80943507	80943507	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PTPRQ	NM_001145026	exon22	c.G3763C	p.E1255Q	CTACCTGAAACAG	.	163.0	42.0	129.0	0.0	.	119	.	.	Atlas-SNP
LRRIQ1	84125	hgsc.bcm.edu	hg19	12	85466707	85466707	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	LRRIQ1	NM_001079910	exon11	c.A2718G	p.E906E	GGAAGAAAAACTT	.	121.0	26.0	74.0	0.0	.	512	.	.	Atlas-SNP
KERA	11081	hgsc.bcm.edu	hg19	12	91449375	91449375	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	KERA	NM_007035	exon2	c.A684T	p.I228I	TTCTGGTATTCCT	.	109.0	33.0	103.0	0.0	.	62	.	.	Atlas-SNP
UHRF1BP1L	23074	hgsc.bcm.edu	hg19	12	100453136	100453136	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	UHRF1BP1L	NM_015054	exon14	c.A1919T	p.Y640F	CTGGTATATGTTT	.	129.0	26.0	85.0	0.0	.	144	.	.	Atlas-SNP
SLC17A8	246213	hgsc.bcm.edu	hg19	12	100813686	100813686	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SLC17A8	NM_139319	exon12	c.C1519G	p.Q507E	GAGAAACAGGAGT	.	52.0	9.0	38.0	0.0	.	89	.	.	Atlas-SNP
UTP20	27340	hgsc.bcm.edu	hg19	12	101711258	101711258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	UTP20	NM_014503	exon22	c.A2555G	p.N852S	GTAGCAATGAGTA	.	94.0	25.0	77.0	0.0	.	222	.	.	Atlas-SNP
KIAA1033	23325	hgsc.bcm.edu	hg19	12	105540256	105540256	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	KIAA1033	NM_015275	exon23	c.A2361T	p.R787S	TATGAGAAACATT	.	282.0	55.0	241.0	0.0	.	83	.	.	Atlas-SNP
SSH1	54434	hgsc.bcm.edu	hg19	12	109186287	109186287	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SSH1	NM_001161331	exon13	c.G1701A	p.Q567Q	CTGGGGCTGTCTG	.	73.0	13.0	60.0	0.0	.	144	.	.	Atlas-SNP
UBE3B	89910	hgsc.bcm.edu	hg19	12	109968392	109968392	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	UBE3B	NM_130466	exon26	c.A2851T	p.R951X	AGTCACAGAGTCA	.	58.0	18.0	50.0	0.0	.	116	.	.	Atlas-SNP
CCDC60	160777	hgsc.bcm.edu	hg19	12	119978503	119978503	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CCDC60	NM_178499	exon14	c.T1636A	p.Y546N	GGGCCCTACAGCG	.	45.0	8.0	58.0	0.0	.	84	.	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	hg19	12	124284917	124284917	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	DNAH10	NM_207437	exon14	c.A2090T	p.Q697L	CTCTCCAGGAAGA	.	167.0	31.0	140.0	0.0	.	888	.	.	Atlas-SNP
CCDC92	80212	hgsc.bcm.edu	hg19	12	124427948	124427948	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CCDC92	NM_025140	exon3	c.A127T	p.S43C	GCGTGCTGGCATG	.	28.0	7.0	37.0	0.0	.	18	.	.	Atlas-SNP
TMEM132B	114795	hgsc.bcm.edu	hg19	12	126138935	126138935	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	TMEM132B	NM_052907	exon9	c.A2916T	p.I972I	CATGATAGACAGG	.	119.0	40.0	62.0	0.0	.	207	.	.	Atlas-SNP
RNF17	56163	hgsc.bcm.edu	hg19	13	25374648	25374648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	RNF17	NM_001184993	exon13	c.G1734T	p.L578F	CTCATTGAAAGAC	.	37.0	11.0	35.0	0.0	.	259	.	.	Atlas-SNP
CPB2	1361	hgsc.bcm.edu	hg19	13	46627758	46627758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CPB2	NM_001872	exon11	c.G1263T	p.R421S	AACATTCCTAATG	.	138.0	39.0	163.0	0.0	.	60	.	.	Atlas-SNP
SLITRK1	114798	hgsc.bcm.edu	hg19	13	84453857	84453857	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SLITRK1	NM_052910	exon1	c.A1786T	p.S596C	CAGTGCTGTTTTT	.	94.0	24.0	100.0	0.0	.	196	.	.	Atlas-SNP
FGF14	2259	hgsc.bcm.edu	hg19	13	103053956	103053956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	FGF14	NM_175929	exon1	c.T73C	p.F25L	TGAGAAAGAAGAG	.	106.0	8.0	91.0	0.0	.	86	.	.	Atlas-SNP
OR11H4	390442	hgsc.bcm.edu	hg19	14	20711318	20711318	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	OR11H4	NM_001004479	exon1	c.T368A	p.L123H	AATGTCTCTTTCT	.	76.0	23.0	92.0	0.0	.	63	.	.	Atlas-SNP
EDDM3A	10876	hgsc.bcm.edu	hg19	14	21215986	21215986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	EDDM3A	NM_006683	exon2	c.G247A	p.E83K	ATCAATGAGAAGG	.	94.0	24.0	91.0	0.0	.	15	.	.	Atlas-SNP
EFS	10278	hgsc.bcm.edu	hg19	14	23828142	23828142	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	EFS	NM_005864	exon5	c.G1194A	p.P398P	CTGATCCGGGGGC	.	69.0	11.0	59.0	0.0	.	37	.	.	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	hg19	14	45645010	45645010	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	FANCM	NM_020937	exon14	c.A3053T	p.E1018V	CACTTGAGAATTT	.	94.0	24.0	105.0	0.0	.	225	.	.	Atlas-SNP
PLEK2	26499	hgsc.bcm.edu	hg19	14	67864480	67864480	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PLEK2	NM_016445	exon2	c.T106A	p.Y36N	GCTTGTAGTACAC	.	91.0	19.0	103.0	0.0	.	23	.	.	Atlas-SNP
EML5	161436	hgsc.bcm.edu	hg19	14	89105158	89105158	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	EML5	NM_183387	exon31	c.A4331T	p.Q1444L	CCTACTTGGCCAG	.	86.0	16.0	59.0	0.0	.	141	.	.	Atlas-SNP
FBLN5	10516	hgsc.bcm.edu	hg19	14	92403334	92403334	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	FBLN5	NM_006329	exon4	c.A336T	p.I112I	GCGGCATATAAGA	.	137.0	28.0	98.0	0.0	.	60	.	.	Atlas-SNP
APOPT1	84334	hgsc.bcm.edu	hg19	14	104029339	104029339	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	.	NM_032374	exon1	c.A40T	p.M14L	GGGGCCATGGTGG	.	42.0	8.0	22.0	0.0	.	.	.	.	Atlas-SNP
WDR76	79968	hgsc.bcm.edu	hg19	15	44120478	44120478	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	WDR76	NM_024908	exon2	c.A376T	p.K126X	CAACCCAAGAGAA	.	89.0	31.0	108.0	0.0	.	34	.	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54919024	54919024	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	UNC13C	NM_001080534	exon31	c.6360-2A>T	.	CCACACAGCATTC	.	55.0	17.0	44.0	0.0	.	674	.	.	Atlas-SNP
TSC2	7249	hgsc.bcm.edu	hg19	16	2104375	2104375	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	TSC2	NM_001114382	exon5	c.A415T	p.R139W	CACGAAAGGCTGG	.	79.0	25.0	84.0	0.0	.	364	.	.	Atlas-SNP
COG7	91949	hgsc.bcm.edu	hg19	16	23436070	23436070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	COG7	NM_153603	exon7	c.C1009T	p.H337Y	GTTTACGTAGGTG	.	92.0	27.0	112.0	0.0	.	62	.	.	Atlas-SNP
MYLK3	91807	hgsc.bcm.edu	hg19	16	46781875	46781875	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	MYLK3	NM_182493	exon1	c.G231A	p.G77G	ATCAGCCCCGCCC	.	59.0	16.0	57.0	0.0	.	82	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88494260	88494260	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ZNF469	NM_001127464	exon1	c.A382T	p.R128W	AGCTCGAGGACCA	.	65.0	23.0	78.0	0.0	.	121	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577569	7577569	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	TP53_ENST00000545858,colon,carcinoma,0,2	TP53	NM_000546	exon7	c.T712C	p.C238R	TGTTACACATGTA	.	63.0	27.0	85.0	0.0	.	33396	.	.	Atlas-SNP
FOXN1	8456	hgsc.bcm.edu	hg19	17	26861766	26861766	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	FOXN1	NM_003593	exon7	c.G1177C	p.G393R	AAGCTGGGCTCCC	.	126.0	25.0	112.0	0.0	.	51	.	.	Atlas-SNP
PIGS	94005	hgsc.bcm.edu	hg19	17	26888503	26888503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	PIGS,NS,carcinoma,0,1	PIGS	NM_033198	exon6	c.G613A	p.A205T	GGTCAGCCAGAGC	.	64.0	18.0	60.0	0.0	.	42	.	.	Atlas-SNP
SLC6A4	6532	hgsc.bcm.edu	hg19	17	28548654	28548654	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SLC6A4	NM_001045	exon3	c.T323A	p.I108K	TAACATATGTAGG	.	61.0	17.0	70.0	0.0	.	60	.	.	Atlas-SNP
SPACA3	124912	hgsc.bcm.edu	hg19	17	31322727	31322727	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SPACA3	NM_173847	exon2	c.T335A	p.L112Q	ACAGCCTGGCTGA	.	119.0	26.0	80.0	0.0	.	35	.	.	Atlas-SNP
FNDC8	54752	hgsc.bcm.edu	hg19	17	33454263	33454263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	FNDC8	NM_017559	exon2	c.G412T	p.G138C	GCGCTCGGCCCCT	.	115.0	17.0	64.0	0.0	.	28	.	.	Atlas-SNP
KRTAP9-9	81870	hgsc.bcm.edu	hg19	17	39411680	39411680	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	KRTAP9-9	NM_030975	exon1	c.A43T	p.R15W	TGCTGCAGGACCA	.	58.0	16.0	62.0	0.0	.	24	.	.	Atlas-SNP
KRT33B	3884	hgsc.bcm.edu	hg19	17	39525975	39525975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	KRT33B	NM_002279	exon1	c.C28A	p.L10M	AGCTCAGGCTGGG	.	150.0	33.0	145.0	0.0	.	46	.	.	Atlas-SNP
DHX8	1659	hgsc.bcm.edu	hg19	17	41582192	41582192	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	DHX8	NM_004941	exon12	c.A1727T	p.Q576L	TGGTCCAGGTGAG	.	160.0	29.0	103.0	0.0	.	98	.	.	Atlas-SNP
ASB16	92591	hgsc.bcm.edu	hg19	17	42249420	42249420	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ASB16	NM_080863	exon2	c.G308C	p.W103S	GGTTCTGGGTGCT	.	50.0	12.0	35.0	0.0	.	34	.	.	Atlas-SNP
SLC4A1	6521	hgsc.bcm.edu	hg19	17	42327879	42327879	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SLC4A1	NM_000342	exon20	c.T2683A	p.F895I	CATCAAAGGTTGC	.	53.0	12.0	62.0	0.0	.	104	.	.	Atlas-SNP
SLC4A1	6521	hgsc.bcm.edu	hg19	17	42335828	42335828	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	SLC4A1,NS,neuroblastoma,0,1	SLC4A1	NM_000342	exon10	c.A1040T	p.Y347F	GACTGATAGCGCC	.	129.0	31.0	96.0	0.0	.	104	.	.	Atlas-SNP
KCNH6	81033	hgsc.bcm.edu	hg19	17	61623092	61623092	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	KCNH6	NM_030779	exon14	c.T2814A	p.P938P	ACAGCCTGAGGGG	.	66.0	13.0	89.0	0.0	.	122	.	.	Atlas-SNP
HELZ	9931	hgsc.bcm.edu	hg19	17	65186459	65186459	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	HELZ	NM_014877	exon10	c.A570T	p.Q190H	GATTCCTTGTTCT	.	142.0	27.0	82.0	0.0	.	160	.	.	Atlas-SNP
KCNJ2	3759	hgsc.bcm.edu	hg19	17	68171897	68171897	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	KCNJ2	NM_000891	exon2	c.A717T	p.E239D	TTCTGAAGGGGAG	.	91.0	18.0	55.0	0.0	.	74	.	.	Atlas-SNP
LLGL2	3993	hgsc.bcm.edu	hg19	17	73566301	73566301	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	LLGL2	NM_004524	exon15	c.C1839T	p.L613L	TGGCCTCTTTGAC	.	63.0	21.0	64.0	0.0	.	155	.	.	Atlas-SNP
EXOC7	23265	hgsc.bcm.edu	hg19	17	74087274	74087274	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	EXOC7	NM_001013839	exon7	c.A851T	p.Q284L	CCATGCTGGGAAT	.	87.0	27.0	106.0	0.0	.	47	.	.	Atlas-SNP
SMCHD1	23347	hgsc.bcm.edu	hg19	18	2784472	2784472	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SMCHD1	NM_015295	exon45	c.A5572T	p.T1858S	TGTCCTACACTGC	.	170.0	36.0	144.0	0.0	.	88	.	.	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	hg19	18	21422660	21422660	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	LAMA3	NM_001127717	exon29	c.A3549T	p.S1183S	CATCTCAGAGCCT	.	129.0	33.0	142.0	0.0	.	397	.	.	Atlas-SNP
KLHL14	57565	hgsc.bcm.edu	hg19	18	30350114	30350114	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	KLHL14	NM_020805	exon2	c.G441A	p.V147V	CAGGGTCACGTTG	.	217.0	45.0	157.0	0.0	.	92	.	.	Atlas-SNP
ZBTB7C	201501	hgsc.bcm.edu	hg19	18	45566767	45566767	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ZBTB7C	NM_001039360	exon2	c.A712T	p.K238X	TGGCCTTGGGGTA	.	87.0	17.0	70.0	0.0	.	73	.	.	Atlas-SNP
ZNF532	55205	hgsc.bcm.edu	hg19	18	56651265	56651265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ZNF532	NM_018181	exon11	c.C3473T	p.A1158V	GAGGAGCAATCAC	.	285.0	50.0	269.0	0.0	.	108	.	.	Atlas-SNP
CDH20	28316	hgsc.bcm.edu	hg19	18	59217403	59217403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CDH20	NM_031891	exon10	c.C1841T	p.P614L	TGCTCCCAGTCAG	.	67.0	9.0	73.0	0.0	.	117	.	.	Atlas-SNP
CDH19	28513	hgsc.bcm.edu	hg19	18	64172081	64172081	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CDH19	NM_021153	exon12	c.A2287T	p.M763L	CAAACATGCATGC	.	96.0	16.0	94.0	0.0	.	141	.	.	Atlas-SNP
CDH19	28513	hgsc.bcm.edu	hg19	18	64172083	64172083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CDH19	NM_021153	exon12	c.G2285T	p.C762F	AACATGCATGCTA	.	96.0	16.0	94.0	0.0	.	141	.	.	Atlas-SNP
ZNF407	55628	hgsc.bcm.edu	hg19	18	72345386	72345386	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ZNF407	NM_001146190	exon1	c.A2411T	p.Q804L	GTGTGCAATTACA	.	83.0	16.0	73.0	0.0	.	231	.	.	Atlas-SNP
NFIC	4782	hgsc.bcm.edu	hg19	19	3382056	3382056	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	NFIC	NM_001245004	exon2	c.A377T	p.K126M	CGGACAAGGTGTG	.	88.0	35.0	93.0	0.0	.	36	.	.	Atlas-SNP
C19orf59	199675	hgsc.bcm.edu	hg19	19	7743420	7743420	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	C19orf59	NM_174918	exon5	c.C417A	p.G139G	GAGAGGCTGGGAT	.	104.0	31.0	94.0	0.0	.	15	.	.	Atlas-SNP
OR7E24	26648	hgsc.bcm.edu	hg19	19	9361792	9361792	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	OR7E24	NM_001079935	exon1	c.A73T	p.T25S	AATCTCACAGGTG	.	43.0	9.0	36.0	0.0	.	48	.	.	Atlas-SNP
CD97	976	hgsc.bcm.edu	hg19	19	14507927	14507927	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CD97	NM_078481	exon6	c.A517T	p.S173C	TGCCACAGCTCCA	.	72.0	21.0	97.0	0.0	.	86	.	.	Atlas-SNP
CYP4F12	66002	hgsc.bcm.edu	hg19	19	15794357	15794357	+	Silent	SNP	A	A	G	rs376069087	alternate_allele	TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CYP4F12	NM_023944	exon7	c.A702G	p.K234K	AGAGAAAAGAAGC	.	107.0	23.0	53.0	0.0	.	89	.	.	Atlas-SNP
COLGALT1	79709	hgsc.bcm.edu	hg19	19	17678227	17678227	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	.	NM_024656	exon4	c.G502C	p.D168H	GATGCGGACAACC	.	91.0	16.0	45.0	0.0	.	.	.	.	Atlas-SNP
ATP13A1	57130	hgsc.bcm.edu	hg19	19	19766889	19766889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ATP13A1	NM_020410	exon8	c.C1187T	p.P396L	TTCTGTGGGGGGA	.	39.0	7.0	32.0	0.0	.	82	.	.	Atlas-SNP
ZFP14	57677	hgsc.bcm.edu	hg19	19	36832052	36832052	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ZFP14	NM_020917	exon5	c.A676T	p.K226X	AGGGTTTCTCACC	.	72.0	21.0	57.0	0.0	.	68	.	.	Atlas-SNP
GGN	199720	hgsc.bcm.edu	hg19	19	38877316	38877316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	GGN	NM_152657	exon3	c.G586A	p.A196T	GTGAGGCGGGTGT	.	78.0	20.0	76.0	0.0	.	50	.	.	Atlas-SNP
DLL3	10683	hgsc.bcm.edu	hg19	19	39998581	39998581	+	Silent	SNP	A	A	T	rs199745659	alternate_allele	TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	DLL3	NM_016941	exon8	c.A1785T	p.L595L	CCCGCTACACACT	.	94.0	15.0	77.0	0.0	.	47	.	A|0.999;G|0.001	Atlas-SNP
CEACAM4	1089	hgsc.bcm.edu	hg19	19	42132079	42132079	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CEACAM4	NM_001817	exon2	c.T320A	p.L107Q	AACAGCAGGGATC	.	162.0	39.0	120.0	0.0	.	42	.	.	Atlas-SNP
ZNF226	7769	hgsc.bcm.edu	hg19	19	44676286	44676286	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	.	NM_015919	exon4	c.G61T	p.E21X	GAGGAGGAATTGG	.	74.0	12.0	74.0	0.0	.	.	.	.	Atlas-SNP
CBLC	23624	hgsc.bcm.edu	hg19	19	45303670	45303670	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CBLC	NM_012116	exon10	c.G1395T	p.A465A	AGCTGCGCTGGGA	.	165.0	30.0	161.0	0.0	.	41	.	.	Atlas-SNP
MYBPC2	4606	hgsc.bcm.edu	hg19	19	50962198	50962198	+	Missense_Mutation	SNP	C	C	A	rs202035202	bycluster;alternate_allele	TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	MYBPC2	NM_004533	exon22	c.C2530A	p.R844S	CTTCCCCGCCATC	.	106.0	31.0	104.0	0.0	.	103	.	.	Atlas-SNP
SYT3	84258	hgsc.bcm.edu	hg19	19	51129240	51129240	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SYT3	NM_032298	exon5	c.T1316A	p.L439H	TAGCAGAGTGAGA	.	121.0	23.0	102.0	0.0	.	85	.	.	Atlas-SNP
KLK6	5653	hgsc.bcm.edu	hg19	19	51470458	51470458	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	KLK6	NM_001012964	exon3	c.T164A	p.L55Q	ACCCACAGTGGAT	.	135.0	27.0	92.0	0.0	.	35	.	.	Atlas-SNP
VSIG10L	147645	hgsc.bcm.edu	hg19	19	51841247	51841247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	VSIG10L	NM_001163922	exon6	c.G1945A	p.G649R	AATTTCCCAGGTC	.	83.0	16.0	62.0	0.0	.	40	.	.	Atlas-SNP
HAS1	3036	hgsc.bcm.edu	hg19	19	52222631	52222631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	HAS1	NM_001523	exon2	c.C530T	p.A177V	CCCACCGCGCCCG	.	107.0	25.0	106.0	0.0	.	61	.	.	Atlas-SNP
ZNF880	400713	hgsc.bcm.edu	hg19	19	52888535	52888535	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ZNF880	NM_001145434	exon4	c.A1702T	p.R568X	CATCACAGAATCC	.	177.0	39.0	163.0	0.0	.	45	.	.	Atlas-SNP
LENG8	114823	hgsc.bcm.edu	hg19	19	54965762	54965762	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	LENG8	NM_052925	exon6	c.A580T	p.S194C	CAGCACAGCCAGG	.	144.0	22.0	119.0	0.0	.	73	.	.	Atlas-SNP
NLRP13	126204	hgsc.bcm.edu	hg19	19	56413554	56413554	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	NLRP13	NM_176810	exon9	c.T2636A	p.L879Q	GCTGCCAGCTGGC	.	39.0	7.0	43.0	0.0	.	220	.	.	Atlas-SNP
NLRP5	126206	hgsc.bcm.edu	hg19	19	56520164	56520164	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	NLRP5	NM_153447	exon3	c.A453T	p.P151P	TTCACCAGAAGAT	.	105.0	21.0	78.0	0.0	.	217	.	.	Atlas-SNP
ZNF835	90485	hgsc.bcm.edu	hg19	19	57176467	57176467	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ZNF835	NM_001005850	exon2	c.T100A	p.C34S	CTGGACAGCTTTC	.	80.0	10.0	81.0	0.0	.	106	.	.	Atlas-SNP
ZNF135	7694	hgsc.bcm.edu	hg19	19	58571397	58571397	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ZNF135	NM_003436	exon2	c.A27T	p.T9T	CTCCACAGACCCG	.	65.0	16.0	53.0	0.0	.	159	.	.	Atlas-SNP
ADAM33	80332	hgsc.bcm.edu	hg19	20	3652923	3652923	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ADAM33	NM_025220	exon14	c.T1455A	p.P485P	AAACTCAGGGAGG	.	119.0	29.0	94.0	0.0	.	76	.	.	Atlas-SNP
FERMT1	55612	hgsc.bcm.edu	hg19	20	6064810	6064810	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	FERMT1	NM_017671	exon13	c.T1595A	p.L532Q	GCGGCCAGCTGAA	.	41.0	11.0	33.0	0.0	.	106	.	.	Atlas-SNP
SEC23B	10483	hgsc.bcm.edu	hg19	20	18534971	18534971	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SEC23B	NM_032985	exon18	c.A2085T	p.Q695H	TGCTCAAGAAATT	.	85.0	19.0	80.0	0.0	.	70	.	.	Atlas-SNP
RALGAPA2	57186	hgsc.bcm.edu	hg19	20	20601245	20601245	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	RALGAPA2	NM_020343	exon11	c.T1263A	p.A421A	TGTTACAGCTATC	.	101.0	25.0	102.0	0.0	.	274	.	.	Atlas-SNP
ID1	3397	hgsc.bcm.edu	hg19	20	30193298	30193298	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ID1	NM_002165	exon1	c.T108C	p.S36S	TCTGTCTGAGCAG	.	76.0	20.0	76.0	0.0	.	12	.	.	Atlas-SNP
R3HDML	140902	hgsc.bcm.edu	hg19	20	42966048	42966048	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	R3HDML	NM_178491	exon1	c.T251A	p.M84K	CCAACATGGAATA	.	130.0	34.0	108.0	0.0	.	33	.	.	Atlas-SNP
WISP2	8839	hgsc.bcm.edu	hg19	20	43355869	43355869	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	WISP2	NM_003881	exon4	c.T674A	p.L225Q	GCCGACTGGAGAC	.	31.0	7.0	48.0	0.0	.	28	.	.	Atlas-SNP
SEMG1	6406	hgsc.bcm.edu	hg19	20	43836884	43836884	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SEMG1	NM_003007	exon2	c.A946T	p.S316C	ATTTATAGCCAAA	.	427.0	98.0	305.0	0.0	.	71	.	.	Atlas-SNP
PARD6B	84612	hgsc.bcm.edu	hg19	20	49366413	49366413	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PARD6B	NM_032521	exon3	c.A507T	p.L169L	ACCCCTAGGATTC	.	195.0	52.0	158.0	0.0	.	31	.	.	Atlas-SNP
TMPRSS15	5651	hgsc.bcm.edu	hg19	21	19666925	19666925	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	TMPRSS15	NM_002772	exon20	c.A2306T	p.H769L	CATTTATGGTTAC	.	348.0	80.0	271.0	0.0	.	189	.	.	Atlas-SNP
LTN1	26046	hgsc.bcm.edu	hg19	21	30341864	30341864	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	LTN1	NM_015565	exon9	c.T1373G	p.F458C	TCAAAAAAAGCAG	.	81.0	18.0	71.0	0.0	.	141	.	.	Atlas-SNP
SEZ6L	23544	hgsc.bcm.edu	hg19	22	26707784	26707784	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SEZ6L	NM_021115	exon8	c.A1732T	p.T578S	AACTTCACTACAT	.	120.0	33.0	130.0	0.0	.	174	.	.	Atlas-SNP
SLC5A1	6523	hgsc.bcm.edu	hg19	22	32480985	32480985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SLC5A1	NM_000343	exon9	c.G984A	p.M328I	CATCATGGTGATG	.	94.0	20.0	79.0	0.0	.	80	.	.	Atlas-SNP
FAM227A	646851	hgsc.bcm.edu	hg19	22	39016298	39016298	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	.	NM_001013647	exon12	c.959-2A>T	.	TCTCCCTATAGAA	.	69.0	13.0	53.0	0.0	.	.	.	.	Atlas-SNP
TOMM22	56993	hgsc.bcm.edu	hg19	22	39078326	39078326	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	TOMM22	NM_020243	exon2	c.118-2A>T	.	CACCACAGCTAGA	.	57.0	13.0	74.0	0.0	.	10	.	.	Atlas-SNP
TNRC6B	23112	hgsc.bcm.edu	hg19	22	40708618	40708618	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	TNRC6B	NM_001162501	exon18	c.A4545T	p.V1515V	CATTGTAGATACT	.	82.0	18.0	68.0	0.0	.	195	.	.	Atlas-SNP
CLCN4	1183	hgsc.bcm.edu	hg19	X	10166045	10166045	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CLCN4	NM_001830	exon6	c.G499C	p.A167P	TTTTTGGCTGTCT	.	141.0	34.0	99.0	0.0	.	84	.	.	Atlas-SNP
FRMPD4	9758	hgsc.bcm.edu	hg19	X	12735864	12735864	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	FRMPD4	NM_014728	exon16	c.T2919A	p.A973A	GGCTGCTAGGCCA	.	234.0	65.0	204.0	0.0	.	214	.	.	Atlas-SNP
CDKL5	6792	hgsc.bcm.edu	hg19	X	18606148	18606148	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CDKL5	NM_003159	exon9	c.T629C	p.L210S	AGCCTTTATTTCC	.	225.0	53.0	187.0	0.0	.	124	.	.	Atlas-SNP
MAGEB3	4114	hgsc.bcm.edu	hg19	X	30254845	30254845	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	MAGEB3	NM_002365	exon5	c.T804A	p.P268P	TAATCCTGCACGC	.	346.0	84.0	252.0	0.0	.	54	.	.	Atlas-SNP
CXorf30	645090	hgsc.bcm.edu	hg19	X	36379611	36379611	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CXorf30	NM_001098843	exon16	c.A1356T	p.P452P	GAAACCATTAAGG	.	624.0	132.0	531.0	0.0	.	76	.	.	Atlas-SNP
PRRG1	5638	hgsc.bcm.edu	hg19	X	37285109	37285109	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PRRG1	NM_001173490	exon3	c.A27G	p.E9E	GGGAGAAAAAGCC	.	677.0	151.0	549.0	0.0	.	42	.	.	Atlas-SNP
RPGR	6103	hgsc.bcm.edu	hg19	X	38145017	38145017	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	RPGR	NM_001034853	exon15	c.A3235T	p.R1079W	CCTGCCTTTCATT	.	115.0	20.0	86.0	0.0	.	175	.	.	Atlas-SNP
MAOB	4129	hgsc.bcm.edu	hg19	X	43656381	43656381	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	MAOB	NM_000898	exon6	c.T609A	p.N203K	TCCTCCATTTGTT	.	88.0	22.0	68.0	0.0	.	52	.	.	Atlas-SNP
SSX1	6756	hgsc.bcm.edu	hg19	X	48123234	48123234	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	SSX1	NM_005635	exon6	c.A348T	p.P116P	GAAGCCAGCAGAG	.	518.0	110.0	444.0	0.0	.	27	.	.	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53619443	53619443	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	HUWE1	NM_031407	exon33	c.A3887T	p.E1296V	GACCCCTCCTTCT	.	62.0	12.0	66.0	0.0	.	724	.	.	Atlas-SNP
TRO	7216	hgsc.bcm.edu	hg19	X	54956640	54956640	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	TRO	NM_001039705	exon12	c.T3483C	p.S1161S	TGGCAGTGCATCT	.	93.0	28.0	101.0	0.0	.	246	.	.	Atlas-SNP
TEX11	56159	hgsc.bcm.edu	hg19	X	69749740	69749740	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	TEX11	NM_001003811	exon30	c.T2675G	p.L892R	AAGGCCAGGCCAC	.	89.0	18.0	76.0	0.0	.	132	.	.	Atlas-SNP
TEX11	56159	hgsc.bcm.edu	hg19	X	69964041	69964041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	TEX11	NM_001003811	exon11	c.A766G	p.K256E	ATTTCTTATCCAT	.	627.0	121.0	454.0	0.0	.	132	.	.	Atlas-SNP
IL2RG	3561	hgsc.bcm.edu	hg19	X	70330769	70330769	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	IL2RG	NM_000206	exon2	c.A247T	p.T83S	GGTTGGTAGGCTG	.	171.0	42.0	149.0	0.0	.	96	.	.	Atlas-SNP
CXCR3	2833	hgsc.bcm.edu	hg19	X	70836820	70836820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	CXCR3	NM_001142797	exon2	c.G643A	p.V215M	GGGTCACGCGGGC	.	254.0	61.0	248.0	0.0	.	57	.	.	Atlas-SNP
PCDH11X	27328	hgsc.bcm.edu	hg19	X	91132904	91132904	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PCDH11X	NM_001168363	exon2	c.A1665T	p.T555T	TGTCACAGTCTTT	.	324.0	86.0	268.0	0.0	.	714	.	.	Atlas-SNP
DCX	1641	hgsc.bcm.edu	hg19	X	110644314	110644314	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	DCX	NM_000555	exon3	c.A852T	p.T284T	GTGGGCTGTCTTC	.	137.0	28.0	114.0	0.0	.	158	.	.	Atlas-SNP
ZNF75D	7626	hgsc.bcm.edu	hg19	X	134425482	134425482	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	ZNF75D	NM_007131	exon4	c.T612C	p.H204H	TTGATCATGCACA	.	180.0	45.0	133.0	0.0	.	65	.	.	Atlas-SNP
PLXNB3	5365	hgsc.bcm.edu	hg19	X	153042749	153042749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	PLXNB3	NM_001163257	exon31	c.G5083T	p.V1695L	GCCAAGGTGCGGT	.	156.0	29.0	110.0	0.0	.	208	.	.	Atlas-SNP
ND6	0	hgsc.bcm.edu	hg19	MT	14459	14459	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	.	ENST00000361681	exon1	c.C215G	p.A72G	GCCATCGCTGTAG	.	67.0	7.0	26.0	0.0	.	.	.	.	Atlas-SNP
GRM3	2913	hgsc.bcm.edu	hg19	7	86394697	86394698	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	GRM3	NM_000840	exon2	c.236_237insC	p.I79fs	.	.	118.0	31.0	85.0	0.0	.	237	.	.	Atlas-INDEL
NEK11	79858	hgsc.bcm.edu	hg19	3	130871532	130871543	+	In_Frame_Del	DEL	TTACCTTGATGA	TTACCTTGATGA	-	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	TTACCTTGATGA	TTACCTTGATGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.	NEK11	NM_024800	exon9	c.854_865del	p.285_289del	.	.	207.0	28.0	173.0	0.0	.	76	.	.	Atlas-INDEL
COBL	23242	hgsc.bcm.edu	hg19	7	51287561	51287562	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-AACL-01A-11D-A40R-10	TCGA-DD-AACL-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2b9cdb07-82ec-42bb-9de0-6329a096b64a	799314ef-97a0-4db6-ac6c-f820a0294be9	.,1	COBL	NM_015198	exon2	c.122_123insC	p.H41fs	.	.	169.0	30.0	136.0	0.0	.	167	.	.	Atlas-INDEL
