Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TAS1R1	80835	hgsc.bcm.edu	hg19	1	6630983	6630983	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	TAS1R1	NM_177540	exon2	c.A206T	p.N69I	GCTTCAATGAGCA	.	60.0	5.0	62.0	0.0	.	76	.	.	Atlas-SNP
GIPC2	54810	hgsc.bcm.edu	hg19	1	78601371	78601371	+	Nonsense_Mutation	SNP	G	G	T	rs138793126	alternate_allele	TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	GIPC2,NS,carcinoma,0,1	GIPC2	NM_017655	exon6	c.G892T	p.E298X	CCAGACGAATTTG	.	71.0	3.0	101.0	0.0	.	37	.	G|1.000;A|0.000	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	hg19	1	152084224	152084224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	TCHH	NM_007113	exon3	c.A1469G	p.K490R	TCGAGCTTCAGCC	.	64.0	5.0	28.0	0.0	.	275	.	.	Atlas-SNP
TDRD10	126668	hgsc.bcm.edu	hg19	1	154516919	154516919	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	TDRD10	NM_182499	exon10	c.G723A	p.E241E	CCTGGAGGGCTCC	.	339.0	44.0	252.0	0.0	.	48	.	.	Atlas-SNP
KCNT2	343450	hgsc.bcm.edu	hg19	1	196394993	196394993	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	KCNT2,colon,carcinoma,0,1	KCNT2	NM_198503	exon11	c.A1110G	p.L370L	TCTCAATAGGTCT	.	214.0	59.0	133.0	0.0	.	243	.	.	Atlas-SNP
CRB1	23418	hgsc.bcm.edu	hg19	1	197390426	197390426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	CRB1	NM_001257966	exon6	c.G1468T	p.G490C	TTTGAGGGCGATG	.	144.0	22.0	84.0	0.0	.	284	.	.	Atlas-SNP
LAMB3	3914	hgsc.bcm.edu	hg19	1	209807908	209807908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	LAMB3	NM_000228	exon6	c.G448A	p.A150T	CGGCAGCCAGGTA	.	196.0	123.0	104.0	0.0	.	136	.	.	Atlas-SNP
AMER3	205147	hgsc.bcm.edu	hg19	2	131520231	131520231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	.	NM_152698	exon2	c.C586T	p.R196W	GGGGGGCGGCGAA	.	58.0	13.0	61.0	0.0	.	.	.	.	Atlas-SNP
P2RY12	64805	hgsc.bcm.edu	hg19	3	151056067	151056067	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	P2RY12	NM_022788	exon3	c.A567G	p.I189M	ATTTACTATTTCA	.	95.0	18.0	103.0	0.0	.	36	.	.	Atlas-SNP
JAKMIP1	152789	hgsc.bcm.edu	hg19	4	6037770	6037770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	JAKMIP1	NM_001099433	exon19	c.G2240A	p.G747D	GCCTCACCGGCCC	.	116.0	30.0	143.0	0.0	.	250	.	.	Atlas-SNP
ATP8A1	10396	hgsc.bcm.edu	hg19	4	42524292	42524292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	ATP8A1	NM_006095	exon22	c.T1832C	p.V611A	TCAGCCACAGCAA	.	90.0	13.0	83.0	0.0	.	206	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	hg19	4	55569979	55569979	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	KIT	NM_000222	exon5	c.T846C	p.V282V	GAGAGTTAATGAT	.	139.0	87.0	222.0	0.0	.	7396	.	.	Atlas-SNP
ALB	213	hgsc.bcm.edu	hg19	4	74272458	74272458	+	Missense_Mutation	SNP	G	G	C	rs77050410	bycluster;alternate_allele	TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.,1	ALB	NM_000477	exon3	c.G250C	p.E84Q	TCAGCTGAAAATT	.	18.0	0.0	65.0	0.0	.	132	.	.	Atlas-SNP
UNC5C	8633	hgsc.bcm.edu	hg19	4	96141175	96141175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	UNC5C	NM_003728	exon8	c.G1261A	p.G421R	AGCCCCCATTGAG	.	190.0	95.0	318.0	0.0	.	141	.	.	Atlas-SNP
CCT5	22948	hgsc.bcm.edu	hg19	5	10250466	10250466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	CCT5	NM_012073	exon1	c.G14T	p.G5V	CCATGGGGACCCT	.	142.0	49.0	172.0	0.0	.	49	.	.	Atlas-SNP
FAM134B	54463	hgsc.bcm.edu	hg19	5	16477816	16477816	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	FAM134B	NM_001034850	exon8	c.T955A	p.F319I	GGTTGAAGGTCCC	.	146.0	31.0	171.0	0.0	.	72	.	.	Atlas-SNP
ITGA2	3673	hgsc.bcm.edu	hg19	5	52367816	52367816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	ITGA2	NM_002203	exon18	c.C2284A	p.L762M	ATCAGTCTGGAAA	.	103.0	23.0	115.0	0.0	.	211	.	.	Atlas-SNP
REEP5	7905	hgsc.bcm.edu	hg19	5	112238198	112238198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	REEP5	NM_005669	exon3	c.G230A	p.S77N	TTGGGACTCTCTA	.	133.0	22.0	114.0	0.0	.	12	.	.	Atlas-SNP
PRSS16	10279	hgsc.bcm.edu	hg19	6	27223091	27223091	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	PRSS16	NM_005865	exon12	c.C1542A	p.V514V	TGAAGTCTGAATC	.	178.0	52.0	119.0	0.0	.	66	.	.	Atlas-SNP
TMEM30A	55754	hgsc.bcm.edu	hg19	6	75974997	75974997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	TMEM30A	NM_018247	exon3	c.G403A	p.V135M	ATTTCACGTAACG	.	84.0	57.0	67.0	0.0	.	40	.	.	Atlas-SNP
ADAM18	8749	hgsc.bcm.edu	hg19	8	39467002	39467002	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	ADAM18	NM_001190956	exon5	c.268-2A>T	.	TTTTTCAGATGCA	.	70.0	42.0	48.0	0.0	.	169	.	.	Atlas-SNP
PRKDC	5591	hgsc.bcm.edu	hg19	8	48846651	48846651	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	PRKDC,bladder,carcinoma,0,2	PRKDC	NM_001081640	exon16	c.1498-1G>A	.	AGGGCCCTGGCCA	.	86.0	62.0	48.0	0.0	.	394	.	.	Atlas-SNP
EFR3A	23167	hgsc.bcm.edu	hg19	8	133008691	133008691	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	EFR3A	NM_015137	exon19	c.A2104G	p.T702A	GTGGACACCGTAT	.	78.0	47.0	70.0	0.0	.	96	.	.	Atlas-SNP
RPL8	6132	hgsc.bcm.edu	hg19	8	146016689	146016689	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	RPL8	NM_033301	exon4	c.A472T	p.I158F	AGGAGATAACCTT	.	116.0	21.0	73.0	0.0	.	29	.	.	Atlas-SNP
PTPRD	5789	hgsc.bcm.edu	hg19	9	8341939	8341939	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	PTPRD	NM_002839	exon40	c.T4701C	p.D1567D	CATGGCATCTATG	.	85.0	36.0	79.0	0.0	.	1348	.	.	Atlas-SNP
KCNT1	57582	hgsc.bcm.edu	hg19	9	138662763	138662763	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	KCNT1	NM_020822	exon18	c.G1830T	p.P610P	GAACCCGGGGCCC	.	203.0	41.0	209.0	0.0	.	139	.	.	Atlas-SNP
PROSER2	254427	hgsc.bcm.edu	hg19	10	11912001	11912001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	.	NM_153256	exon4	c.G904A	p.A302T	GGGGACGCCGGCG	.	27.0	15.0	19.0	0.0	.	.	.	.	Atlas-SNP
CYP2E1	1571	hgsc.bcm.edu	hg19	10	135340900	135340900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	CYP2E1	NM_000773	exon1	c.A1G	p.M1V	GGCACCATGTCTG	.	94.0	20.0	69.0	0.0	.	69	.	.	Atlas-SNP
ABTB2	25841	hgsc.bcm.edu	hg19	11	34180864	34180864	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	ABTB2	NM_145804	exon14	c.C2676A	p.D892E	CTTCATGTCGCTG	.	92.0	4.0	73.0	0.0	.	101	.	.	Atlas-SNP
PACSIN3	29763	hgsc.bcm.edu	hg19	11	47201777	47201777	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	PACSIN3	NM_016223	exon6	c.T563A	p.L188Q	TCCTGCAGTTTGC	.	33.0	16.0	35.0	0.0	.	28	.	.	Atlas-SNP
TYR	7299	hgsc.bcm.edu	hg19	11	89028410	89028410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	TYR,NS,carcinoma,0,1	TYR	NM_000372	exon5	c.C1466T	p.T489I	TCCTCACTGCCCT	.	194.0	32.0	192.0	0.0	.	130	.	.	Atlas-SNP
POU2F3	25833	hgsc.bcm.edu	hg19	11	120175898	120175898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	POU2F3	NM_001244682	exon7	c.C610T	p.R204C	CAGAGGCGCATTA	.	136.0	12.0	113.0	0.0	.	44	.	.	Atlas-SNP
WSB2	55884	hgsc.bcm.edu	hg19	12	118480654	118480654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	WSB2	NM_018639	exon4	c.A551G	p.N184S	TGTTTATTCAGGT	.	56.0	14.0	76.0	0.0	.	32	.	.	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	hg19	12	124887093	124887093	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	NCOR2_ENST00000405201,NS,carcinoma,0,11	NCOR2	NM_006312	exon16	c.G1497A	p.Q499Q	CTGCTGCTGTTGT	.	38.0	3.0	29.0	0.0	.	475	.	.	Atlas-SNP
BORA	79866	hgsc.bcm.edu	hg19	13	73327942	73327942	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	.	NM_024808	exon11	c.C1597G	p.Q533E	AAATCTCAAGCAT	.	204.0	118.0	326.0	0.0	.	.	.	.	Atlas-SNP
C16orf78	123970	hgsc.bcm.edu	hg19	16	49407994	49407994	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	C16orf78	NM_144602	exon1	c.T144A	p.A48A	ACAAGCTCCCGAG	.	60.0	37.0	82.0	0.0	.	57	.	.	Atlas-SNP
LCAT	3931	hgsc.bcm.edu	hg19	16	67974099	67974099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	LCAT	NM_000229	exon6	c.C1031T	p.P344L	GGCGTGGGCAGGC	.	69.0	22.0	109.0	0.0	.	31	.	.	Atlas-SNP
SNTB2	6645	hgsc.bcm.edu	hg19	16	69318053	69318053	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	SNTB2	NM_006750	exon5	c.C1251T	p.F417F	TCTCTTCAGGGTG	.	70.0	19.0	117.0	0.0	.	22	.	.	Atlas-SNP
KRT10	3858	hgsc.bcm.edu	hg19	17	38975319	38975319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	KRT10	NM_000421	exon7	c.G1468A	p.G490S	CGTGGCCGCCGCC	.	58.0	11.0	20.0	0.0	.	56	.	.	Atlas-SNP
ARMC7	79637	hgsc.bcm.edu	hg19	17	73106617	73106617	+	Missense_Mutation	SNP	G	G	A	rs141301558	alternate_allele	TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	ARMC7	NM_024585	exon2	c.G151A	p.E51K	AACTACGAGTATC	.	133.0	24.0	108.0	0.0	.	14	.	G|1.000;C|0.000	Atlas-SNP
MATK	4145	hgsc.bcm.edu	hg19	19	3783153	3783153	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	MATK	NM_002378	exon7	c.C650G	p.T217S	GACTTGGTCCCGT	.	79.0	11.0	73.0	0.0	.	108	.	.	Atlas-SNP
ZSWIM4	65249	hgsc.bcm.edu	hg19	19	13915863	13915863	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	ZSWIM4	NM_023072	exon3	c.C613T	p.Q205X	TTCGTGCAGTACC	.	31.0	5.0	47.0	0.0	.	69	.	.	Atlas-SNP
ALB	213	hgsc.bcm.edu	hg19	4	74272457	74272457	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	ALB	NM_000477	exon3	c.248delC	p.A83fs	.	.	41.0	21.0	68.0	0.0	.	132	.	.	Atlas-INDEL
BRD7	29117	hgsc.bcm.edu	hg19	16	50368752	50368752	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	BRD7	NM_013263	exon7	c.758delC	p.T253fs	.	.	56.0	30.0	117.0	0.0	.	61	.	.	Atlas-INDEL
KRT40	125115	hgsc.bcm.edu	hg19	17	39134528	39134528	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AACN-01A-11D-A40R-10	TCGA-DD-AACN-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4fcf6ef-eba4-47be-8457-574686f0add0	1d70749b-f7ee-4419-9978-ef6792e52e18	.	KRT40	NM_182497	exon9	c.1218delG	p.S406fs	.	.	111.0	15.0	102.0	0.0	.	27	.	.	Atlas-INDEL
