Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PHTF1	10745	hgsc.bcm.edu	hg19	1	114254606	114254606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	PHTF1	NM_006608	exon8	c.G913T	p.V305F	TCTTAACTTCACA	.	108.0	62.0	106.0	0.0	.	69	.	.	Atlas-SNP
TDRD5	163589	hgsc.bcm.edu	hg19	1	179609571	179609571	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	TDRD5	NM_173533	exon11	c.A1791G	p.R597R	GGTGAGACCAGTA	.	72.0	20.0	64.0	0.0	.	149	.	.	Atlas-SNP
PTGS2	5743	hgsc.bcm.edu	hg19	1	186647479	186647479	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	PTGS2	NM_000963	exon4	c.G371C	p.S124T	TCCCAGCTTTTGT	.	161.0	12.0	140.0	0.0	.	144	.	.	Atlas-SNP
KIF21B	23046	hgsc.bcm.edu	hg19	1	200946498	200946498	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	KIF21B	NM_001252102	exon31	c.G4167T	p.S1389S	CTGGCCCGAGGAC	.	96.0	52.0	111.0	0.0	.	208	.	.	Atlas-SNP
CACNA1S	779	hgsc.bcm.edu	hg19	1	201017755	201017755	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	CACNA1S	NM_000069	exon36	c.A4396T	p.T1466S	AGAGTGTGGCATT	.	50.0	29.0	47.0	0.0	.	249	.	.	Atlas-SNP
EXO1	9156	hgsc.bcm.edu	hg19	1	242035468	242035468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	EXO1	NM_130398	exon12	c.A1402G	p.T468A	GGACCTACTAACA	.	381.0	130.0	329.0	0.0	.	103	.	.	Atlas-SNP
ZDBF2	57683	hgsc.bcm.edu	hg19	2	207172701	207172701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	ZDBF2	NM_020923	exon5	c.T3449C	p.V1150A	TGGAAGTTAAGAA	.	124.0	50.0	124.0	0.0	.	531	.	.	Atlas-SNP
DGKD	8527	hgsc.bcm.edu	hg19	2	234360641	234360641	+	Silent	SNP	C	C	T	rs375913920		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	DGKD	NM_152879	exon18	c.C2199T	p.P733P	CTTACCCGGTGGC	.	65.0	26.0	59.0	0.0	.	106	.	.	Atlas-SNP
ZFYVE20	64145	hgsc.bcm.edu	hg19	3	15115634	15115634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	ZFYVE20	NM_022340	exon14	c.G2010T	p.E670D	TTCCTCCTCCTCG	.	48.0	22.0	70.0	0.0	.	61	.	.	Atlas-SNP
ALDH1L1	10840	hgsc.bcm.edu	hg19	3	125856710	125856710	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	ALDH1L1	NM_001270364	exon10	c.G1200T	p.L400L	CACTAACAGCTGG	.	107.0	36.0	113.0	0.0	.	138	.	.	Atlas-SNP
SLC9A9	285195	hgsc.bcm.edu	hg19	3	142987725	142987725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	SLC9A9,NS,carcinoma,0,1	SLC9A9	NM_173653	exon15	c.G1702T	p.A568S	CATAGGCTTGAGG	.	87.0	41.0	113.0	0.0	.	117	.	.	Atlas-SNP
PLSCR1	5359	hgsc.bcm.edu	hg19	3	146234856	146234856	+	Silent	SNP	G	G	T	rs377240309	alternate_allele	TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	PLSCR1	NM_021105	exon8	c.C837A	p.I279I	GAACTGGATTCCA	.	169.0	32.0	167.0	0.0	.	35	.	.	Atlas-SNP
MFSD1	64747	hgsc.bcm.edu	hg19	3	158531837	158531837	+	Silent	SNP	C	C	T	rs147447476		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	MFSD1_ENST00000415822,right_lower_lobe,carcinoma,0,2	MFSD1	NM_022736	exon7	c.C780T	p.L260L	AACCCTCGGGATC	.	55.0	33.0	73.0	0.0	.	88	.	C|1.000;T|0.000	Atlas-SNP
ZCCHC4	29063	hgsc.bcm.edu	hg19	4	25314444	25314444	+	Silent	SNP	A	A	C	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	ZCCHC4	NM_024936	exon1	c.A13C	p.R5R	GCCTCCAGGAATG	.	44.0	19.0	55.0	0.0	.	34	.	.	Atlas-SNP
PDLIM4	8572	hgsc.bcm.edu	hg19	5	131606786	131606786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	PDLIM4	NM_003687	exon4	c.G506T	p.S169I	CCCCCAGGTAGCA	.	99.0	4.0	98.0	0.0	.	22	.	.	Atlas-SNP
UNC5A	90249	hgsc.bcm.edu	hg19	5	176306745	176306745	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	UNC5A	NM_133369	exon15	c.A2387T	p.K796M	CCTCCAAGCCCAG	.	73.0	13.0	85.0	0.0	.	76	.	.	Atlas-SNP
C5orf45	51149	hgsc.bcm.edu	hg19	5	179274998	179274998	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	C5orf45	NM_016175	exon3	c.A195C	p.Q65H	TGAAACTTGTCCC	.	81.0	32.0	105.0	0.0	.	23	.	.	Atlas-SNP
DAXX	1616	hgsc.bcm.edu	hg19	6	33289254	33289254	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	DAXX	NM_001141970	exon3	c.T334G	p.L112V	AGGCCAAAAACAG	.	83.0	33.0	79.0	0.0	.	111	.	.	Atlas-SNP
PRSS35	167681	hgsc.bcm.edu	hg19	6	84233828	84233828	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	PRSS35	NM_153362	exon2	c.T668G	p.L223R	AGCATCTGCGGGA	.	156.0	34.0	161.0	0.0	.	60	.	.	Atlas-SNP
FERD3L	222894	hgsc.bcm.edu	hg19	7	19184898	19184898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	FERD3L,scalp,carcinoma,0,1	FERD3L	NM_152898	exon1	c.C88T	p.L30F	CGCAGAGGAGAGG	.	32.0	11.0	41.0	0.0	.	63	.	.	Atlas-SNP
IGF2BP3	10643	hgsc.bcm.edu	hg19	7	23509595	23509595	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	IGF2BP3	NM_006547	exon1	c.G135A	p.P45P	CTCGTCCGGGCAG	.	51.0	13.0	48.0	0.0	.	71	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48313643	48313643	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	ABCA13	NM_152701	exon17	c.T4380G	p.N1460K	TGTCAATATTTAC	.	127.0	49.0	116.0	0.0	.	1192	.	.	Atlas-SNP
LETM2	137994	hgsc.bcm.edu	hg19	8	38257839	38257839	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	LETM2,rectum,carcinoma,0,1	LETM2	NM_001199659	exon5	c.T554A	p.F185Y	CAAAATTTCTTCA	.	40.0	12.0	66.0	0.0	.	57	.	.	Atlas-SNP
ADAM18	8749	hgsc.bcm.edu	hg19	8	39468133	39468133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	ADAM18	NM_001190956	exon6	c.A430G	p.K144E	CAAATGAAAAATA	.	308.0	142.0	444.0	1.0	.	169	.	.	Atlas-SNP
DENND3	22898	hgsc.bcm.edu	hg19	8	142151392	142151392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	DENND3	NM_014957	exon4	c.T352C	p.Y118H	TTTCCCTATTACA	.	73.0	8.0	51.0	0.0	.	127	.	.	Atlas-SNP
CCIN	881	hgsc.bcm.edu	hg19	9	36170372	36170372	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	CCIN	NM_005893	exon1	c.C873T	p.G291G	CCACGGCCAGTTC	.	35.0	19.0	56.0	0.0	.	56	.	.	Atlas-SNP
ANK3	288	hgsc.bcm.edu	hg19	10	61828727	61828727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.,2	ANK3	NM_020987	exon37	c.C11912T	p.T3971I	GTGGTAGTGGTGG	.	52.0	4.0	62.0	1.0	.	703	.	.	Atlas-SNP
PALD1	27143	hgsc.bcm.edu	hg19	10	72326463	72326463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	.	NM_014431	exon20	c.C2545T	p.P849S	CTCGAGCCCTCTG	.	13.0	7.0	26.0	0.0	.	.	.	.	Atlas-SNP
KRTAP5-8	57830	hgsc.bcm.edu	hg19	11	71249530	71249530	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	KRTAP5-8	NM_021046	exon1	c.T429C	p.C143C	CTGCTGTTCCCAG	.	99.0	15.0	79.0	0.0	.	28	.	.	Atlas-SNP
EFCAB4B	84766	hgsc.bcm.edu	hg19	12	3788188	3788188	+	Missense_Mutation	SNP	C	C	A	rs3803135	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	EFCAB4B	NM_001144958	exon6	c.G417T	p.K139N	ATACACCTTCTCT	.	49.0	18.0	88.0	0.0	.	100	.	C|0.862;T|0.138	Atlas-SNP
SOX5	6660	hgsc.bcm.edu	hg19	12	24048957	24048957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	SOX5	NM_006940	exon2	c.A40G	p.M14V	AAGACATCCTGGA	.	45.0	17.0	48.0	0.0	.	134	.	.	Atlas-SNP
IL31	386653	hgsc.bcm.edu	hg19	12	122657036	122657036	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	IL31	NM_001014336	exon3	c.A418G	p.I140V	GAGAAATAGTCAG	.	72.0	26.0	102.0	0.0	.	23	.	.	Atlas-SNP
DACH1	1602	hgsc.bcm.edu	hg19	13	72440337	72440337	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	DACH1	NM_080759	exon1	c.A571G	p.K191E	CCATTTTGCACTC	.	48.0	35.0	89.0	0.0	.	123	.	.	Atlas-SNP
PSMB11	122706	hgsc.bcm.edu	hg19	14	23512059	23512059	+	Missense_Mutation	SNP	G	G	A	rs368929459		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	PSMB11	NM_001099780	exon1	c.G625A	p.V209M	TGCGCCGTGGCCC	.	35.0	20.0	48.0	0.0	.	40	.	.	Atlas-SNP
STON2	85439	hgsc.bcm.edu	hg19	14	81744593	81744593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	STON2	NM_001256430	exon6	c.C1062A	p.S354R	TCTTTGGCTTTTG	.	96.0	5.0	121.0	0.0	.	94	.	.	Atlas-SNP
ATG2B	55102	hgsc.bcm.edu	hg19	14	96779699	96779699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	ATG2B	NM_018036	exon24	c.A3716G	p.H1239R	TGAACATGAAAAG	.	367.0	143.0	387.0	0.0	.	169	.	.	Atlas-SNP
EIF3J	8669	hgsc.bcm.edu	hg19	15	44849749	44849749	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	EIF3J	NM_003758	exon6	c.G472T	p.E158X	TTTACAGAGTTTG	.	77.0	27.0	66.0	0.0	.	29	.	.	Atlas-SNP
ADAD2	161931	hgsc.bcm.edu	hg19	16	84228736	84228736	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	ADAD2	NM_139174	exon5	c.G885T	p.L295L	CCTCCTGTTGGAC	.	56.0	37.0	125.0	0.0	.	46	.	.	Atlas-SNP
KRT10	3858	hgsc.bcm.edu	hg19	17	38975317	38975317	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	KRT10	NM_000421	exon7	c.C1470T	p.G490G	GCCGTGGCCGCCG	.	77.0	9.0	27.0	0.0	.	56	.	.	Atlas-SNP
KRT10	3858	hgsc.bcm.edu	hg19	17	38975319	38975319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	KRT10	NM_000421	exon7	c.G1468A	p.G490S	CGTGGCCGCCGCC	.	74.0	8.0	27.0	0.0	.	56	.	.	Atlas-SNP
UBTF	7343	hgsc.bcm.edu	hg19	17	42289011	42289011	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	UBTF	NM_014233	exon10	c.A1010C	p.Q337P	TCCTTCTGGGACA	.	23.0	8.0	26.0	0.0	.	65	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9076110	9076110	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	MUC16	NM_024690	exon3	c.C11336G	p.S3779C	CCTATAGAGAAGG	.	49.0	32.0	83.0	0.0	.	4315	.	.	Atlas-SNP
DPF1	8193	hgsc.bcm.edu	hg19	19	38703032	38703032	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	DPF1	NM_004647	exon11	c.961-1G>A	.	GGCACCCTGGGGG	.	109.0	38.0	81.0	0.0	.	54	.	.	Atlas-SNP
TNNC2	7125	hgsc.bcm.edu	hg19	20	44451995	44451995	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	TNNC2	NM_003279	exon6	c.G475C	p.V159L	ACTGCACGCCCTC	.	39.0	21.0	38.0	0.0	.	12	.	.	Atlas-SNP
SGSM1	129049	hgsc.bcm.edu	hg19	22	25308673	25308673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	SGSM1	NM_001039948	exon23	c.G3047A	p.G1016E	CCCACGGAGGCGC	.	85.0	11.0	95.0	0.0	.	150	.	.	Atlas-SNP
RBM10	8241	hgsc.bcm.edu	hg19	X	47030582	47030582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	RBM10	NM_001204468	exon4	c.G552T	p.E184D	GGAGGAGGATGAG	.	52.0	4.0	52.0	0.0	.	117	.	.	Atlas-SNP
IRAK1	3654	hgsc.bcm.edu	hg19	X	153277357	153277357	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	IRAK1	NM_001569	exon14	c.G2092T	p.E698X	CCTGTTCCAGGCC	.	24.0	16.0	19.0	0.0	.	107	.	.	Atlas-SNP
CCNO	10309	hgsc.bcm.edu	hg19	5	54529209	54529209	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	CCNO	NM_021147	exon1	c.144delG	p.P48fs	.	.	136.0	56.0	143.0	0.0	.	17	.	.	Atlas-INDEL
TULP2	7288	hgsc.bcm.edu	hg19	19	49399799	49399816	+	Frame_Shift_Del	DEL	TTCAAACAGCCGCCGCTG	TTCAAACAGCCGCCGCTG	-	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	TTCAAACAGCCGCCGCTG	TTCAAACAGCCGCCGCTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	TULP2	NM_003323	exon4	c.85_100del	p.29_34del	.	.	30.0	10.0	36.0	0.0	.	60	.	.	Atlas-INDEL
FRMD5	84978	hgsc.bcm.edu	hg19	15	44194417	44194418	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	FRMD5	NM_032892	exon7	c.595_596insA	p.A199fs	.	.	48.0	23.0	65.0	0.0	.	45	.	.	Atlas-INDEL
ALB	213	hgsc.bcm.edu	hg19	4	74272435	74272440	+	In_Frame_Del	DEL	CATGTG	CATGTG	-	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	CATGTG	CATGTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	ALB	NM_000477	exon3	c.226_231del	p.76_77del	.	.	44.0	13.0	42.0	0.0	.	132	.	.	Atlas-INDEL
AKAP9	10142	hgsc.bcm.edu	hg19	7	91652251	91652251	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	AKAP9	NM_147185	exon14	c.4075delC	p.Q1359fs	.	.	78.0	16.0	108.0	0.0	.	788	.	.	Atlas-INDEL
ODF1	4956	hgsc.bcm.edu	hg19	8	103573034	103573042	+	In_Frame_Del	DEL	CCCGTGCAG	CCCGTGCAG	-	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	CCCGTGCAG	CCCGTGCAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	ODF1,NS,carcinoma,0,1	ODF1	NM_024410	exon2	c.674_682del	p.225_228del	.	.	47.0	10.0	46.0	0.0	.	55	.	.	Atlas-INDEL
ALB	213	hgsc.bcm.edu	hg19	4	74286007	74286007	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	ALB	NM_000477	exon14	c.1821delA	p.L607fs	.	.	134.0	70.0	155.0	0.0	.	132	.	.	Atlas-INDEL
KEAP1	9817	hgsc.bcm.edu	hg19	19	10600016	10600019	+	Frame_Shift_Del	DEL	ATAG	ATAG	-	novel		TCGA-DD-AACO-01A-11D-A40R-10	TCGA-DD-AACO-10A-01D-A40U-10	ATAG	ATAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	42340dfc-2c44-47a6-b81d-99117a74110c	7b21aa0b-afe2-498f-890b-c71e1a5a372a	.	KEAP1	NM_012289	exon5	c.1558_1561del	p.520_521del	.	.	67.0	40.0	131.0	0.0	.	182	.	.	Atlas-INDEL
