Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CHD5	26038	hgsc.bcm.edu	hg19	1	6211179	6211179	+	Missense_Mutation	SNP	T	T	A	rs140594423	alternate_allele	TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CHD5	NM_015557	exon7	c.A907T	p.S303C	TGGCGCTGTCGAA	.	26.0	8.0	44.0	0.0	.	267	.	T|1.000;G|0.000	Atlas-SNP
ZBTB48	3104	hgsc.bcm.edu	hg19	1	6641168	6641168	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ZBTB48	NM_005341	exon2	c.A499T	p.R167X	GAGCCCAGAGGCA	.	77.0	33.0	95.0	0.0	.	33	.	.	Atlas-SNP
MTOR	2475	hgsc.bcm.edu	hg19	1	11301649	11301649	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	MTOR	NM_004958	exon10	c.T1502A	p.I501N	TCCTTGATATCCT	.	80.0	25.0	65.0	0.0	.	327	.	.	Atlas-SNP
MST1L	11223	hgsc.bcm.edu	hg19	1	17085815	17085815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	.	NM_001271733	exon8	c.G1006A	p.V336M	AGCCCACGCGCGT	.	98.0	22.0	143.0	0.0	.	.	.	.	Atlas-SNP
CROCC	9696	hgsc.bcm.edu	hg19	1	17280852	17280852	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CROCC	NM_014675	exon22	c.G3321T	p.R1107R	GGACCGGGTAGGG	.	102.0	47.0	148.0	0.0	.	185	.	.	Atlas-SNP
ARHGEF10L	55160	hgsc.bcm.edu	hg19	1	17975106	17975106	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ARHGEF10L	NM_018125	exon22	c.C2330G	p.P777R	AAGCCCCATTCTG	.	142.0	12.0	137.0	0.0	.	219	.	.	Atlas-SNP
IFNLR1	163702	hgsc.bcm.edu	hg19	1	24486039	24486039	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	.	NM_170743	exon5	c.A595T	p.R199X	TGGTTCTGGCACT	.	137.0	50.0	198.0	0.0	.	.	.	.	Atlas-SNP
COL16A1	1307	hgsc.bcm.edu	hg19	1	32149574	32149574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	COL16A1	NM_001856	exon33	c.C2314T	p.P772S	CTGGGGGCCCTTG	.	285.0	106.0	357.0	0.0	.	137	.	.	Atlas-SNP
ZMYM4	9202	hgsc.bcm.edu	hg19	1	35884117	35884117	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ZMYM4	NM_005095	exon29	c.T4383C	p.N1461N	AGAGAATACTGAC	.	120.0	62.0	134.0	0.0	.	143	.	.	Atlas-SNP
RIMS3	9783	hgsc.bcm.edu	hg19	1	41094561	41094561	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	RIMS3	NM_014747	exon7	c.A635T	p.K212M	GTCATCTTTGTCT	.	62.0	26.0	77.0	0.0	.	44	.	.	Atlas-SNP
EIF2B3	8891	hgsc.bcm.edu	hg19	1	45340421	45340421	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	EIF2B3	NM_020365	exon10	c.A1131T	p.S377S	ACAGGATGAGCCA	.	89.0	45.0	111.0	0.0	.	43	.	.	Atlas-SNP
KANK4	163782	hgsc.bcm.edu	hg19	1	62740090	62740090	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	KANK4	NM_181712	exon3	c.A686T	p.Q229L	CCCTCCTGGACCA	.	159.0	63.0	201.0	0.0	.	135	.	.	Atlas-SNP
LRRC7	57554	hgsc.bcm.edu	hg19	1	70503923	70503923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	LRRC7	NM_020794	exon19	c.T2302C	p.W768R	GACAACTGGACTG	.	144.0	55.0	160.0	0.0	.	400	.	.	Atlas-SNP
RWDD3	25950	hgsc.bcm.edu	hg19	1	95712212	95712212	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	RWDD3	NM_015485	exon3	c.A688T	p.R230W	CACAAAAGGTATA	.	228.0	96.0	275.0	0.0	.	24	.	.	Atlas-SNP
MYBPHL	343263	hgsc.bcm.edu	hg19	1	109839480	109839480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	MYBPHL	NM_001010985	exon5	c.G655A	p.V219I	CAAAGACACGGAA	.	116.0	55.0	105.0	0.0	.	28	.	.	Atlas-SNP
EPS8L3	79574	hgsc.bcm.edu	hg19	1	110294361	110294361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	EPS8L3,colon,carcinoma,0,1	EPS8L3	NM_139053	exon16	c.C1481A	p.A494E	CGTCCCGCCTCAT	.	52.0	18.0	61.0	0.0	.	73	.	.	Atlas-SNP
SYT6	148281	hgsc.bcm.edu	hg19	1	114646329	114646329	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	SYT6	NM_205848	exon4	c.G831A	p.L277L	CTCTCCCAAGTCC	.	66.0	27.0	62.0	0.0	.	66	.	.	Atlas-SNP
SPAG17	200162	hgsc.bcm.edu	hg19	1	118558796	118558796	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	SPAG17	NM_206996	exon29	c.A4079C	p.H1360P	CTTTTGTGACTTT	.	108.0	49.0	131.0	0.0	.	263	.	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	144930752	144930752	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	PDE4DIP	NM_001002811	exon1	c.A957T	p.L319L	TCCAGGTAGGCTG	.	262.0	41.0	222.0	0.0	.	817	.	.	Atlas-SNP
CTSS	1520	hgsc.bcm.edu	hg19	1	150722488	150722488	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CTSS	NM_004079	exon6	c.A787T	p.R263X	CACTTCTGTAGAG	.	84.0	34.0	81.0	0.0	.	31	.	.	Atlas-SNP
PGLYRP3	114771	hgsc.bcm.edu	hg19	1	153276487	153276487	+	Splice_Site	SNP	T	T	G	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	PGLYRP3	NM_052891	exon5	c.377-2A>C	.	GCTGCCTTAAAGA	.	92.0	35.0	45.0	0.0	.	55	.	.	Atlas-SNP
IL6R	3570	hgsc.bcm.edu	hg19	1	154407475	154407475	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	IL6R	NM_000565	exon5	c.A650T	p.D217V	AGCCTGATCCGCC	.	99.0	34.0	79.0	0.0	.	47	.	.	Atlas-SNP
NES	10763	hgsc.bcm.edu	hg19	1	156640210	156640210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	NES	NM_006617	exon4	c.G3770T	p.G1257V	ACTTTCCCCAGGG	.	56.0	21.0	44.0	0.0	.	196	.	.	Atlas-SNP
NTRK1	4914	hgsc.bcm.edu	hg19	1	156838010	156838010	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	NTRK1	NM_001012331	exon5	c.G543A	p.G181G	GCAAGGGCCCCTG	.	60.0	11.0	40.0	0.0	.	287	.	.	Atlas-SNP
PBX1	5087	hgsc.bcm.edu	hg19	1	164768945	164768945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	PBX1_ENST00000420696,NS,carcinoma,0,1	PBX1	NM_001204963	exon4	c.G520A	p.E174K	TGCAACGAGTTCA	.	174.0	44.0	169.0	0.0	.	60	.	.	Atlas-SNP
PRRC2C	23215	hgsc.bcm.edu	hg19	1	171556150	171556150	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	.	NM_015172	exon31	c.A7752G	p.V2584V	TACAGTACCTTTA	.	98.0	4.0	92.0	0.0	.	.	.	.	Atlas-SNP
METTL13	51603	hgsc.bcm.edu	hg19	1	171761248	171761248	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	METTL13	NM_015935	exon6	c.T1566A	p.A522A	TGATGCTGTGGAG	.	118.0	24.0	102.0	0.0	.	67	.	.	Atlas-SNP
KIAA1614	57710	hgsc.bcm.edu	hg19	1	180885579	180885579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	KIAA1614	NM_020950	exon2	c.A340G	p.K114E	TCCCCCAAGAAAC	.	168.0	51.0	103.0	0.0	.	75	.	.	Atlas-SNP
ZNF648	127665	hgsc.bcm.edu	hg19	1	182025741	182025741	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ZNF648	NM_001009992	exon2	c.A1405T	p.I469F	TGTGGATGCGCTG	.	125.0	35.0	89.0	0.0	.	111	.	.	Atlas-SNP
LAMC2	3918	hgsc.bcm.edu	hg19	1	183209229	183209229	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	LAMC2	NM_005562	exon21	c.A3124T	p.M1042L	TTGGCCATGGAAA	.	157.0	45.0	116.0	0.0	.	113	.	.	Atlas-SNP
CFHR5	81494	hgsc.bcm.edu	hg19	1	196965322	196965322	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CFHR5	NM_030787	exon6	c.A961T	p.M321L	CTTCCTATGTGTG	.	104.0	35.0	86.0	0.0	.	150	.	.	Atlas-SNP
PLEKHA6	22874	hgsc.bcm.edu	hg19	1	204226522	204226522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	PLEKHA6	NM_014935	exon9	c.C1483T	p.P495S	CAGCAGGGTCAGC	.	118.0	42.0	141.0	0.0	.	115	.	.	Atlas-SNP
AVPR1B	553	hgsc.bcm.edu	hg19	1	206225342	206225342	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	AVPR1B	NM_000707	exon1	c.A902T	p.Q301L	GTGTCCAGATGTG	.	91.0	19.0	66.0	0.0	.	47	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228482634	228482634	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	OBSCN	NM_001271223	exon48	c.A12836T	p.Q4279L	TGAGGCAGGATGG	.	304.0	93.0	262.0	0.0	.	2142	.	.	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	hg19	1	245851010	245851010	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	KIF26B	NM_018012	exon12	c.T4725A	p.A1575A	CAAGGCTACCCTG	.	218.0	62.0	182.0	0.0	.	343	.	.	Atlas-SNP
OR13G1	441933	hgsc.bcm.edu	hg19	1	247835424	247835424	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	OR13G1	NM_001005487	exon1	c.A920T	p.H307L	TACTAGTGTTTCA	.	110.0	24.0	65.0	0.0	.	78	.	.	Atlas-SNP
OR2T11	127077	hgsc.bcm.edu	hg19	1	248789949	248789949	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	OR2T11	NM_001001964	exon1	c.A481T	p.M161L	CATTCATGGTGAT	.	150.0	59.0	63.0	0.0	.	64	.	.	Atlas-SNP
ASAP2	8853	hgsc.bcm.edu	hg19	2	9520899	9520899	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ASAP2	NM_001135191	exon20	c.A1978T	p.I660F	CTGGACATTGCCA	.	42.0	24.0	40.0	0.0	.	91	.	.	Atlas-SNP
C2orf16	84226	hgsc.bcm.edu	hg19	2	27804758	27804758	+	Missense_Mutation	SNP	A	A	C	rs200680705		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	C2orf16_ENST00000408964,NS,carcinoma,0,2	C2orf16	NM_032266	exon1	c.A5319C	p.R1773S	GAGAAGACATCGC	.	72.0	15.0	103.0	1.0	.	357	.	.	Atlas-SNP
C2orf16	84226	hgsc.bcm.edu	hg19	2	27804762	27804762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	C2orf16_ENST00000408964,NS,carcinoma,0,4	C2orf16	NM_032266	exon1	c.C5323T	p.R1775C	AGACATCGCAGTC	.	77.0	19.0	102.0	0.0	.	357	.	.	Atlas-SNP
TTC27	55622	hgsc.bcm.edu	hg19	2	33007745	33007745	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	TTC27	NM_017735	exon15	c.A1832T	p.K611I	AACAAAAGTAAGT	.	289.0	119.0	398.0	0.0	.	71	.	.	Atlas-SNP
HEATR5B	54497	hgsc.bcm.edu	hg19	2	37255261	37255261	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	HEATR5B	NM_019024	exon24	c.G3658C	p.D1220H	TCTCATCTTTCTT	.	245.0	94.0	291.0	0.0	.	185	.	.	Atlas-SNP
SULT6B1	391365	hgsc.bcm.edu	hg19	2	37415605	37415605	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	SULT6B1	NM_001032377	exon1	c.T65A	p.L22Q	GATGCTAGCACGA	.	92.0	41.0	141.0	0.0	.	46	.	.	Atlas-SNP
CD207	50489	hgsc.bcm.edu	hg19	2	71058314	71058314	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CD207	NM_015717	exon6	c.A854T	p.E285V	TTGGGCTCACCTG	.	92.0	27.0	99.0	0.0	.	47	.	.	Atlas-SNP
GGCX	2677	hgsc.bcm.edu	hg19	2	85780558	85780558	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	GGCX	NM_000821	exon8	c.A952T	p.K318X	CCAGCTTCCGAGG	.	219.0	86.0	288.0	0.0	.	44	.	.	Atlas-SNP
DPP10	57628	hgsc.bcm.edu	hg19	2	116257157	116257157	+	Silent	SNP	T	T	C	rs139947044		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	DPP10	NM_001178034	exon4	c.T355C	p.L119L	ACCACATTATTAT	.	261.0	112.0	297.0	0.0	.	415	.	T|1.000;C|0.000	Atlas-SNP
KYNU	8942	hgsc.bcm.edu	hg19	2	143718311	143718311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	KYNU	NM_001199241	exon9	c.C701T	p.P234L	ATATTCCTGCCAT	.	98.0	44.0	91.0	0.0	.	110	.	.	Atlas-SNP
PLA2R1	22925	hgsc.bcm.edu	hg19	2	160884730	160884730	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	PLA2R1	NM_001195641	exon6	c.T1098A	p.V366V	CTTACCAACTATT	.	303.0	135.0	377.0	0.0	.	153	.	.	Atlas-SNP
SLC38A11	151258	hgsc.bcm.edu	hg19	2	165793884	165793884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	SLC38A11	NM_001199148	exon6	c.G425A	p.R142K	ATTGCCCTTGCCA	.	91.0	13.0	106.0	0.0	.	41	.	.	Atlas-SNP
TTC21B	79809	hgsc.bcm.edu	hg19	2	166781090	166781090	+	Silent	SNP	G	G	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	TTC21B	NM_024753	exon12	c.C1485G	p.V495V	TAGGAAGACTGTT	.	321.0	14.0	447.0	0.0	.	130	.	.	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170062841	170062841	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	LRP2	NM_004525	exon39	c.A7389T	p.S2463S	CTTACCTGAAGCA	.	68.0	33.0	80.0	0.0	.	751	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179428033	179428033	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	TTN	NM_001267550	exon326	c.T82826A	p.V27609D	TCTTTGACCTCTA	.	108.0	35.0	129.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179436145	179436145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	TTN	NM_001267550	exon326	c.C74714T	p.P24905L	TTGAATGGATATT	.	96.0	31.0	115.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179605680	179605680	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	TTN	NM_001267550	exon48	c.T12280A	p.Y4094N	GCTCATAAGATAG	.	76.0	28.0	90.0	0.0	.	18412	.	.	Atlas-SNP
PARD3B	117583	hgsc.bcm.edu	hg19	2	205912302	205912302	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	PARD3B	NM_057177	exon4	c.395-2A>T	.	TCTTCCAGGCACT	.	48.0	24.0	72.0	0.0	.	314	.	.	Atlas-SNP
GLB1L	79411	hgsc.bcm.edu	hg19	2	220104515	220104515	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	GLB1L	NM_024506	exon8	c.T762A	p.Y254X	GGGTTCATACTTC	.	186.0	87.0	214.0	0.0	.	52	.	.	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	hg19	2	220344852	220344852	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	SPEG	NM_005876	exon25	c.A5332T	p.T1778S	GGAGTCACTGACA	.	37.0	16.0	60.0	0.0	.	272	.	.	Atlas-SNP
SLC4A3	6508	hgsc.bcm.edu	hg19	2	220501121	220501121	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	SLC4A3	NM_201574	exon15	c.T2370A	p.L790L	GCTGCTTGTGGTT	.	36.0	14.0	47.0	0.0	.	144	.	.	Atlas-SNP
DGKD	8527	hgsc.bcm.edu	hg19	2	234296973	234296973	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	DGKD	NM_152879	exon2	c.A227T	p.K76M	ACTTTAAGCTTCG	.	212.0	91.0	333.0	0.0	.	106	.	.	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	hg19	3	4558209	4558209	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ITPR1	NM_001099952	exon3	c.G34T	p.G12X	CATATTGGAGACA	.	109.0	5.0	127.0	0.0	.	659	.	.	Atlas-SNP
LHFPL4	375323	hgsc.bcm.edu	hg19	3	9547751	9547751	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	LHFPL4	NM_198560	exon3	c.C543G	p.I181M	GCCGATGATGGCC	.	129.0	10.0	174.0	0.0	.	34	.	.	Atlas-SNP
HRH1	3269	hgsc.bcm.edu	hg19	3	11300933	11300933	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	HRH1	NM_000861	exon3	c.G210A	p.S70S	CCTCTCGGTGGCG	.	97.0	37.0	110.0	0.0	.	58	.	.	Atlas-SNP
RFTN1	23180	hgsc.bcm.edu	hg19	3	16450985	16450985	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	RFTN1	NM_015150	exon4	c.A338T	p.Q113L	GTTTTCTGAGATC	.	73.0	34.0	81.0	0.0	.	79	.	.	Atlas-SNP
MYD88	4615	hgsc.bcm.edu	hg19	3	38180513	38180513	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	MYD88	NM_002468	exon1	c.A361T	p.S121C	GGACCCAGCATTG	.	41.0	16.0	49.0	0.0	.	900	.	.	Atlas-SNP
CSPG5	10675	hgsc.bcm.edu	hg19	3	47614356	47614356	+	Missense_Mutation	SNP	G	G	A	rs371926119		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CSPG5	NM_006574	exon3	c.C1202T	p.T401M	TCCTGCGTGTTGC	.	113.0	48.0	180.0	0.0	.	46	.	.	Atlas-SNP
DHX30	22907	hgsc.bcm.edu	hg19	3	47889323	47889323	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	DHX30	NM_138615	exon14	c.A2163G	p.P721P	GCCTCCAGTTGGG	.	110.0	43.0	184.0	0.0	.	101	.	.	Atlas-SNP
IL17RD	54756	hgsc.bcm.edu	hg19	3	57135384	57135384	+	Silent	SNP	T	T	A	rs143634778	by1000genomes;alternate_allele	TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	IL17RD	NM_017563	exon11	c.A987T	p.I329I	TGAATATATATTT	.	57.0	21.0	62.0	0.0	.	93	.	T|1.000;C|0.000	Atlas-SNP
DZIP3	9666	hgsc.bcm.edu	hg19	3	108407715	108407715	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	DZIP3	NM_014648	exon31	c.A3460T	p.N1154Y	CATGAGAATCTGT	.	272.0	126.0	347.0	0.0	.	111	.	.	Atlas-SNP
MYLK	4638	hgsc.bcm.edu	hg19	3	123419013	123419013	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	MYLK	NM_053025	exon18	c.A3302T	p.K1101M	TTCTGCTTGAAGG	.	38.0	20.0	71.0	0.0	.	224	.	.	Atlas-SNP
RPN1	6184	hgsc.bcm.edu	hg19	3	128356921	128356921	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	RPN1	NM_002950	exon3	c.A354T	p.P118P	AGCAACTGGGAGC	.	84.0	43.0	112.0	0.0	.	39	.	.	Atlas-SNP
ATR	545	hgsc.bcm.edu	hg19	3	142268433	142268433	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ATR	NM_001184	exon15	c.A3059T	p.Q1020L	TTTAATTGTTTTC	.	389.0	176.0	478.0	0.0	.	285	.	.	Atlas-SNP
CPB1	1360	hgsc.bcm.edu	hg19	3	148558490	148558490	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CPB1	NM_001871	exon4	c.T290A	p.L97Q	GCAACCTGAGAAA	.	153.0	65.0	168.0	0.0	.	74	.	.	Atlas-SNP
LAMP3	27074	hgsc.bcm.edu	hg19	3	182871558	182871558	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	LAMP3	NM_014398	exon2	c.A671T	p.K224M	CCAGTCTTGACTG	.	125.0	52.0	122.0	0.0	.	48	.	.	Atlas-SNP
EVC2	132884	hgsc.bcm.edu	hg19	4	5570231	5570231	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	EVC2	NM_147127	exon20	c.A3497T	p.H1166L	TCCACATGTCTCT	.	81.0	40.0	81.0	0.0	.	202	.	.	Atlas-SNP
CRMP1	1400	hgsc.bcm.edu	hg19	4	5868428	5868428	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CRMP1	NM_001014809	exon2	c.A437T	p.Y146F	TCAGCATAAAGGG	.	115.0	48.0	118.0	0.0	.	118	.	.	Atlas-SNP
CHRNA9	55584	hgsc.bcm.edu	hg19	4	40351387	40351387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CHRNA9	NM_017581	exon4	c.T854C	p.M285T	AGCTAATGGTGGC	.	157.0	54.0	202.0	0.0	.	53	.	.	Atlas-SNP
PDGFRA	5156	hgsc.bcm.edu	hg19	4	55127497	55127497	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	PDGFRA	NM_006206	exon3	c.A285T	p.T95T	CCACACAGGGTTG	.	116.0	51.0	114.0	0.0	.	1583	.	.	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	hg19	4	85678264	85678264	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	WDFY3	NM_014991	exon33	c.A5239T	p.N1747Y	CTCGGTTAATCTC	.	165.0	76.0	218.0	0.0	.	314	.	.	Atlas-SNP
PRSS12	8492	hgsc.bcm.edu	hg19	4	119256640	119256640	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	PRSS12	NM_003619	exon3	c.A808T	p.S270C	AAAAGCTACACGT	.	93.0	44.0	107.0	0.0	.	71	.	.	Atlas-SNP
GUCY1A3	2982	hgsc.bcm.edu	hg19	4	156634263	156634263	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	GUCY1A3	NM_001130687	exon7	c.A1100T	p.K367I	ACCTCAAAGGCCA	.	57.0	47.0	84.0	0.0	.	133	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13737537	13737537	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	DNAH5	NM_001369	exon66	c.T11279A	p.L3760Q	TCTTCTAGTTCCT	.	79.0	31.0	89.0	0.0	.	868	.	.	Atlas-SNP
MYO10	4651	hgsc.bcm.edu	hg19	5	16779678	16779678	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	MYO10	NM_012334	exon9	c.C906G	p.D302E	TTCCTGGTCACTG	.	197.0	84.0	302.0	1.0	.	198	.	.	Atlas-SNP
MYO10	4651	hgsc.bcm.edu	hg19	5	16779718	16779718	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	MYO10	NM_012334	exon9	c.T866A	p.L289X	TGATTCAAGTAGT	.	216.0	100.0	292.0	0.0	.	198	.	.	Atlas-SNP
RAB3C	115827	hgsc.bcm.edu	hg19	5	58120945	58120945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	RAB3C	NM_138453	exon4	c.G452T	p.R151L	ACGAGCGGGTCAT	.	349.0	142.0	455.0	0.0	.	47	.	.	Atlas-SNP
SLC25A48	153328	hgsc.bcm.edu	hg19	5	135188296	135188296	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	SLC25A48	NM_145282	exon4	c.T207A	p.I69I	CAGCATTGCCGTC	.	81.0	30.0	72.0	0.0	.	37	.	.	Atlas-SNP
PCDHGB1	56104	hgsc.bcm.edu	hg19	5	140730033	140730033	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	PCDHGB1	NM_018922	exon1	c.A206T	p.E69V	GTGCAGAGGATTA	.	125.0	58.0	156.0	0.0	.	198	.	.	Atlas-SNP
ARAP3	64411	hgsc.bcm.edu	hg19	5	141038013	141038013	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ARAP3	NM_022481	exon25	c.A3445T	p.N1149Y	CCTGGTTAGTCAG	.	104.0	44.0	124.0	0.0	.	139	.	.	Atlas-SNP
HMMR	3161	hgsc.bcm.edu	hg19	5	162917465	162917465	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	HMMR	NM_001142556	exon17	c.A2032T	p.N678Y	GAATTGAATAAAG	.	379.0	155.0	446.0	0.0	.	64	.	.	Atlas-SNP
ADAMTS2	9509	hgsc.bcm.edu	hg19	5	178553054	178553054	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ADAMTS2	NM_014244	exon18	c.T2695A	p.S899T	GCTTCGAGAGGGC	.	32.0	11.0	60.0	0.0	.	190	.	.	Atlas-SNP
CDYL	9425	hgsc.bcm.edu	hg19	6	4937882	4937882	+	Silent	SNP	C	C	G	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CDYL	NM_004824	exon4	c.C1032G	p.V344V	CAGCGTCTTCTGT	.	214.0	128.0	153.0	0.0	.	74	.	.	Atlas-SNP
RPP40	10799	hgsc.bcm.edu	hg19	6	4996253	4996253	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	RPP40	NM_006638	exon7	c.A825T	p.K275N	ATAAGCTTTTGCC	.	214.0	52.0	154.0	0.0	.	36	.	.	Atlas-SNP
PHACTR1	221692	hgsc.bcm.edu	hg19	6	13053698	13053698	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	PHACTR1	NM_030948	exon5	c.A352T	p.R118W	CTGGGAAGGATTT	.	236.0	67.0	180.0	0.0	.	94	.	.	Atlas-SNP
NUP153	9972	hgsc.bcm.edu	hg19	6	17616802	17616802	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	NUP153	NM_005124	exon21	c.G4299T	p.S1433S	GCCCCCCGAGCCT	.	94.0	34.0	111.0	0.0	.	116	.	.	Atlas-SNP
PPP1R11	6992	hgsc.bcm.edu	hg19	6	30035217	30035217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	PPP1R11	NM_021959	exon1	c.G30T	p.E10D	GAGCGAGACCGTC	.	182.0	85.0	235.0	0.0	.	10	.	.	Atlas-SNP
SFTA2	389376	hgsc.bcm.edu	hg19	6	30899302	30899302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	SFTA2	NM_205854	exon3	c.A200G	p.H67R	CTTGCATGGTGGA	.	92.0	31.0	119.0	0.0	.	6	.	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38697676	38697676	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	DNAH8	NM_001206927	exon4	c.526-2A>T	.	TTTAACAGCTGGA	.	93.0	43.0	130.0	0.0	.	1239	.	.	Atlas-SNP
LCA5	167691	hgsc.bcm.edu	hg19	6	80196733	80196733	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	LCA5	NM_001122769	exon8	c.A2082T	p.V694V	CAGTGCTACTTCT	.	68.0	28.0	52.0	0.0	.	71	.	.	Atlas-SNP
BEND3	57673	hgsc.bcm.edu	hg19	6	107390113	107390113	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	BEND3	NM_001080450	exon5	c.A2282T	p.Y761F	TGGTTGTACTGCA	.	103.0	43.0	168.0	0.0	.	70	.	.	Atlas-SNP
TAAR1	134864	hgsc.bcm.edu	hg19	6	132966654	132966654	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	TAAR1	NM_138327	exon1	c.A489T	p.L163L	GAAGTTTAGCTCC	.	110.0	49.0	111.0	0.0	.	41	.	.	Atlas-SNP
MAD1L1	8379	hgsc.bcm.edu	hg19	7	2020106	2020106	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	MAD1L1	NM_003550	exon15	c.A1487T	p.E496V	GCCTCCTCCCTGG	.	66.0	25.0	62.0	0.0	.	81	.	.	Atlas-SNP
AQP1	358	hgsc.bcm.edu	hg19	7	30961780	30961780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	AQP1	NM_198098	exon2	c.C484T	p.R162C	AGGCGCCGTGACC	.	59.0	30.0	41.0	0.0	.	38	.	.	Atlas-SNP
CACNA2D1	781	hgsc.bcm.edu	hg19	7	81589122	81589122	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CACNA2D1	NM_000722	exon37	c.T2990A	p.M997K	GTGTTCATAAGCT	.	54.0	22.0	59.0	0.0	.	191	.	.	Atlas-SNP
SAMD9	54809	hgsc.bcm.edu	hg19	7	92734072	92734072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	SAMD9	NM_001193307	exon2	c.A1339G	p.N447D	TGATGTTAGACTC	.	72.0	31.0	87.0	0.0	.	239	.	.	Atlas-SNP
STAG3	10734	hgsc.bcm.edu	hg19	7	99798553	99798553	+	Silent	SNP	G	G	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	STAG3	NM_012447	exon19	c.G2022C	p.L674L	TTTGCTGACTGAC	.	138.0	24.0	146.0	0.0	.	121	.	.	Atlas-SNP
MET	4233	hgsc.bcm.edu	hg19	7	116423438	116423438	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	MET	NM_001127500	exon19	c.A3767T	p.H1256L	GTGTACACAACAA	.	139.0	58.0	128.0	0.0	.	412	.	.	Atlas-SNP
LEP	3952	hgsc.bcm.edu	hg19	7	127894673	127894673	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	LEP	NM_000230	exon3	c.T361A	p.W121R	TTGCCCTGGGCCA	.	50.0	27.0	77.0	0.0	.	17	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	hg19	7	149488699	149488699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	.	NM_198455	exon34	c.G5150T	p.R1717L	AGGGCCGGAGCCG	.	52.0	27.0	64.0	0.0	.	.	.	.	Atlas-SNP
ADRB3	155	hgsc.bcm.edu	hg19	8	37821737	37821737	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ADRB3	NM_000025	exon2	c.A1226T	p.X409L	CAGGCCTAAGAAA	.	58.0	45.0	128.0	0.0	.	27	.	.	Atlas-SNP
CHRNB3	1142	hgsc.bcm.edu	hg19	8	42587110	42587110	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CHRNB3	NM_000749	exon5	c.T660C	p.Y220Y	CTCCTATCCCTTT	.	84.0	38.0	102.0	0.0	.	74	.	.	Atlas-SNP
XKR4	114786	hgsc.bcm.edu	hg19	8	56436483	56436483	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	XKR4	NM_052898	exon3	c.C1650A	p.S550S	CATCTCCAACAAC	.	77.0	35.0	99.0	0.0	.	104	.	.	Atlas-SNP
ADHFE1	137872	hgsc.bcm.edu	hg19	8	67356642	67356642	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ADHFE1	NM_144650	exon4	c.A185T	p.K62M	TTACAAAGGAAGT	.	213.0	50.0	175.0	0.0	.	83	.	.	Atlas-SNP
EYA1	2138	hgsc.bcm.edu	hg19	8	72129021	72129021	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	EYA1	NM_000503	exon14	c.T1266A	p.T422T	TACACCAGTTGCC	.	210.0	62.0	164.0	0.0	.	108	.	.	Atlas-SNP
FER1L6	654463	hgsc.bcm.edu	hg19	8	125107154	125107154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	FER1L6	NM_001039112	exon35	c.T4570C	p.Y1524H	GAGTCTTATGAAC	.	101.0	39.0	147.0	0.0	.	268	.	.	Atlas-SNP
FAM135B	51059	hgsc.bcm.edu	hg19	8	139323154	139323154	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	FAM135B	NM_015912	exon3	c.G87C	p.Q29H	TCGGATCTGGTAA	.	58.0	21.0	56.0	0.0	.	423	.	.	Atlas-SNP
C8orf31	286122	hgsc.bcm.edu	hg19	8	144126142	144126142	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	C8orf31	NM_173687	exon4	c.A263T	p.Q88L	CCATCCAGGAAGG	.	55.0	22.0	76.0	0.0	.	18	.	.	Atlas-SNP
TSTA3	7264	hgsc.bcm.edu	hg19	8	144696547	144696547	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	TSTA3	NM_003313	exon6	c.A541T	p.N181Y	CGATGTTGAAGTT	.	65.0	25.0	97.0	0.0	.	23	.	.	Atlas-SNP
DOCK8	81704	hgsc.bcm.edu	hg19	9	439312	439312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	DOCK8	NM_203447	exon40	c.G5147T	p.G1716V	AGGATGGGGTGTG	.	90.0	40.0	115.0	0.0	.	401	.	.	Atlas-SNP
CEP78	84131	hgsc.bcm.edu	hg19	9	80851282	80851282	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CEP78	NM_001098802	exon1	c.A16T	p.K6X	TCCGTGAAGCTGC	.	33.0	17.0	55.0	0.0	.	79	.	.	Atlas-SNP
CCDC180	0	hgsc.bcm.edu	hg19	9	100124601	100124601	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	.	NM_020893	exon28	c.A3912T	p.S1304S	GTGCTCACCTCCT	.	95.0	57.0	101.0	0.0	.	.	.	.	Atlas-SNP
NDUFA8	4702	hgsc.bcm.edu	hg19	9	124906563	124906563	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	NDUFA8	NM_014222	exon4	c.A476T	p.Q159L	GCAGGCTGCAGAT	.	105.0	48.0	129.0	0.0	.	20	.	.	Atlas-SNP
OR1J1	347168	hgsc.bcm.edu	hg19	9	125240003	125240003	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	OR1J1	NM_001004451	exon1	c.T203A	p.L68H	TCAGTGAGGGCCA	.	120.0	42.0	147.0	0.0	.	46	.	.	Atlas-SNP
EGFL7	51162	hgsc.bcm.edu	hg19	9	139566450	139566450	+	Missense_Mutation	SNP	G	G	C	rs370929489	alternate_allele	TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	EGFL7	NM_016215	exon10	c.G709C	p.G237R	GACCCCGGCAGCC	.	60.0	29.0	74.0	0.0	.	11	.	.	Atlas-SNP
AKR1C1	1645	hgsc.bcm.edu	hg19	10	5005646	5005646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	AKR1C1	NM_001353	exon1	c.A10G	p.K4E	GATTCGAAATATC	.	89.0	42.0	138.0	0.0	.	39	.	.	Atlas-SNP
RASSF4	83937	hgsc.bcm.edu	hg19	10	45480272	45480272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	RASSF4	NM_032023	exon6	c.G385A	p.E129K	CTGGAGGAGGCAG	.	65.0	15.0	137.0	0.0	.	33	.	.	Atlas-SNP
SLK	9748	hgsc.bcm.edu	hg19	10	105762701	105762701	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	SLK	NM_014720	exon9	c.A1765T	p.M589L	AAGCCCATGGTGG	.	49.0	34.0	110.0	0.0	.	107	.	.	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	hg19	11	1013919	1013919	+	Silent	SNP	G	G	T	rs372205312	alternate_allele	TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	MUC6	NM_005961	exon32	c.C7122A	p.G2374G	GCAGGCGCCCTCA	.	45.0	16.0	37.0	0.0	.	408	.	.	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	hg19	11	6651648	6651648	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	DCHS1	NM_003737	exon10	c.C4377T	p.R1459R	CGACGCGCGGAAA	.	9.0	7.0	1.0	0.0	.	277	.	.	Atlas-SNP
CSNK2A3	283106	hgsc.bcm.edu	hg19	11	11374171	11374171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	.	NM_001256686	exon1	c.C496T	p.H166Y	GCTCATGATCAAT	.	110.0	33.0	84.0	0.0	.	.	.	.	Atlas-SNP
DGKZ	8525	hgsc.bcm.edu	hg19	11	46394022	46394022	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	DGKZ	NM_001105540	exon12	c.A1536T	p.R512R	TCCCCGACAAGTC	.	93.0	26.0	115.0	0.0	.	199	.	.	Atlas-SNP
SLC22A10	387775	hgsc.bcm.edu	hg19	11	63057748	63057748	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	SLC22A10	NM_001039752	exon1	c.A111G	p.L37L	ACTGCTAGAGAAC	.	121.0	63.0	139.0	0.0	.	79	.	.	Atlas-SNP
NARS2	79731	hgsc.bcm.edu	hg19	11	78147774	78147774	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	NARS2	NM_024678	exon14	c.T1376C	p.V459A	TTGTCAACACCCA	.	316.0	129.0	388.0	1.0	.	62	.	.	Atlas-SNP
KIAA1731	85459	hgsc.bcm.edu	hg19	11	93461977	93461977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	KIAA1731	NM_033395	exon25	c.G7292A	p.C2431Y	CAAAATGCTTCTT	.	45.0	20.0	49.0	0.0	.	173	.	.	Atlas-SNP
ARHGAP42	143872	hgsc.bcm.edu	hg19	11	100849716	100849716	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ARHGAP42	NM_152432	exon22	c.2394-2A>T	.	TTTTTCAGAGTGG	.	72.0	26.0	66.0	0.0	.	32	.	.	Atlas-SNP
SLC35F2	54733	hgsc.bcm.edu	hg19	11	107682490	107682490	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	SLC35F2	NM_017515	exon3	c.G317C	p.R106T	CATTTTCTTTTCA	.	64.0	18.0	116.0	0.0	.	29	.	.	Atlas-SNP
UBE4A	9354	hgsc.bcm.edu	hg19	11	118245934	118245934	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	UBE4A	NM_004788	exon9	c.A1461T	p.V487V	AAATGTACACATG	.	64.0	31.0	70.0	0.0	.	97	.	.	Atlas-SNP
KIRREL3	84623	hgsc.bcm.edu	hg19	11	126326329	126326329	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	KIRREL3	NM_032531	exon7	c.T763A	p.S255T	CCACCGAGAGGTT	.	70.0	25.0	72.0	0.0	.	183	.	.	Atlas-SNP
ACAD8	27034	hgsc.bcm.edu	hg19	11	134127071	134127071	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ACAD8	NM_014384	exon3	c.G300T	p.L100L	TGGGCTGTCACGT	.	73.0	33.0	100.0	0.0	.	33	.	.	Atlas-SNP
B3GAT1	27087	hgsc.bcm.edu	hg19	11	134253922	134253922	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	B3GAT1	NM_054025	exon3	c.C273A	p.P91P	GTAGGTGGGCGTC	.	119.0	56.0	123.0	0.0	.	49	.	.	Atlas-SNP
VWF	7450	hgsc.bcm.edu	hg19	12	6091140	6091140	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	VWF	NM_000552	exon42	c.T7099G	p.C2367G	TTTTGCACTCCTC	.	66.0	25.0	68.0	0.0	.	338	.	.	Atlas-SNP
NCAPD2	9918	hgsc.bcm.edu	hg19	12	6618958	6618958	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	NCAPD2	NM_014865	exon3	c.A203T	p.H68L	TTTTGCAGTAAGT	.	58.0	16.0	84.0	0.0	.	99	.	.	Atlas-SNP
CLEC12B	387837	hgsc.bcm.edu	hg19	12	10167985	10167985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CLEC12B	NM_001129998	exon4	c.A544G	p.I182V	GTGAAGATAGACA	.	111.0	48.0	120.0	0.0	.	25	.	.	Atlas-SNP
RAPGEF3	10411	hgsc.bcm.edu	hg19	12	48143536	48143536	+	Silent	SNP	C	C	G	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	RAPGEF3	NM_001098531	exon9	c.G882C	p.V294V	ATGGGTCACCACG	.	55.0	6.0	91.0	0.0	.	98	.	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49440559	49440559	+	Missense_Mutation	SNP	C	C	A	rs200353763	by1000genomes;alternate_allele	TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	MLL2	NM_003482	exon15	c.G4251T	p.M1417I	GAGCAGCATCACC	.	74.0	28.0	117.0	0.0	.	1173	.	C|1.000;T|0.000	Atlas-SNP
KRT71	112802	hgsc.bcm.edu	hg19	12	52946681	52946681	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	KRT71	NM_033448	exon1	c.A181T	p.S61C	TGCCACTGGCCAC	.	67.0	34.0	89.0	0.0	.	70	.	.	Atlas-SNP
PPM1H	57460	hgsc.bcm.edu	hg19	12	63328291	63328291	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	PPM1H	NM_020700	exon1	c.T226A	p.W76R	TGGCCCAGGGCAG	.	90.0	40.0	119.0	0.0	.	42	.	.	Atlas-SNP
EEA1	8411	hgsc.bcm.edu	hg19	12	93170694	93170694	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	EEA1	NM_003566	exon28	c.A4039T	p.R1347X	ACTTTCTATTCAA	.	85.0	42.0	84.0	0.0	.	104	.	.	Atlas-SNP
UTP20	27340	hgsc.bcm.edu	hg19	12	101745844	101745844	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	UTP20	NM_014503	exon39	c.A4896T	p.I1632I	AAATATAACCACT	.	101.0	35.0	116.0	0.0	.	222	.	.	Atlas-SNP
CAMKK2	10645	hgsc.bcm.edu	hg19	12	121691155	121691155	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CAMKK2	NM_153500	exon10	c.T1028A	p.L343H	GAGAGGAGCGCGT	.	93.0	40.0	130.0	0.0	.	87	.	.	Atlas-SNP
PUS1	80324	hgsc.bcm.edu	hg19	12	132428101	132428101	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	PUS1	NM_025215	exon6	c.A1254T	p.E418D	CCTGGAAGGCAGT	.	47.0	23.0	60.0	0.0	.	47	.	.	Atlas-SNP
NUDT15	55270	hgsc.bcm.edu	hg19	13	48611949	48611949	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	NUDT15	NM_018283	exon1	c.T67G	p.C23G	ACCAGCTGCAAGC	.	103.0	91.0	217.0	0.0	.	12	.	.	Atlas-SNP
CHAMP1	283489	hgsc.bcm.edu	hg19	13	115090611	115090611	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	.	NM_001164144	exon3	c.A1294T	p.S432C	ATCCGTAGTCCAG	.	110.0	32.0	119.0	0.0	.	.	.	.	Atlas-SNP
IRF9	10379	hgsc.bcm.edu	hg19	14	24634149	24634149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	IRF9	NM_006084	exon7	c.G976T	p.A326S	AGAACCGCCTACT	.	39.0	16.0	44.0	0.0	.	33	.	.	Atlas-SNP
IRF9	10379	hgsc.bcm.edu	hg19	14	24634150	24634150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	IRF9	NM_006084	exon7	c.C977T	p.A326V	GAACCGCCTACTT	.	38.0	16.0	42.0	0.0	.	33	.	.	Atlas-SNP
ITPK1	3705	hgsc.bcm.edu	hg19	14	93424588	93424588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ITPK1	NM_001142593	exon8	c.G628T	p.V210F	TCTGGACCACGGT	.	101.0	58.0	110.0	0.0	.	53	.	.	Atlas-SNP
HHIPL1	84439	hgsc.bcm.edu	hg19	14	100138668	100138668	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	HHIPL1	NM_001127258	exon8	c.G1745C	p.G582A	CACCTGGCAAATG	.	117.0	8.0	123.0	0.0	.	86	.	.	Atlas-SNP
JAG2	3714	hgsc.bcm.edu	hg19	14	105609964	105609964	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	JAG2	NM_002226	exon25	c.T3096A	p.P1032P	CCTGGCAGGGCTG	.	51.0	22.0	53.0	0.0	.	69	.	.	Atlas-SNP
PACS2	23241	hgsc.bcm.edu	hg19	14	105849223	105849223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	PACS2	NM_001100913	exon15	c.G1598T	p.S533I	CCTTCAGCACCAT	.	29.0	13.0	35.0	0.0	.	75	.	.	Atlas-SNP
MTA1	9112	hgsc.bcm.edu	hg19	14	105931455	105931455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	MTA1	NM_004689	exon16	c.C1559T	p.S520F	AAGCCTCCCAGAG	.	100.0	37.0	119.0	0.0	.	61	.	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28474355	28474355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	HERC2	NM_004667	exon34	c.A5258G	p.K1753R	TTAAATTTGGCAC	.	245.0	100.0	339.0	0.0	.	501	.	.	Atlas-SNP
GREM1	26585	hgsc.bcm.edu	hg19	15	33022899	33022899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	GREM1	NM_001191322	exon2	c.G8A	p.R3H	TGAGCCGCACAGC	.	133.0	49.0	170.0	0.0	.	18	.	.	Atlas-SNP
PLA2G4E	123745	hgsc.bcm.edu	hg19	15	42342841	42342841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	PLA2G4E	NM_001206670	exon1	c.A61G	p.S21G	GTGGGCTCTGTGG	.	62.0	25.0	87.0	0.0	.	60	.	.	Atlas-SNP
TP53BP1	7158	hgsc.bcm.edu	hg19	15	43724680	43724680	+	Silent	SNP	C	C	G	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	TP53BP1	NM_001141980	exon17	c.G3387C	p.V1129V	TTCTAGCACATCT	.	76.0	27.0	108.0	0.0	.	157	.	.	Atlas-SNP
ANXA2	302	hgsc.bcm.edu	hg19	15	60678246	60678246	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ANXA2	NM_001002858	exon2	c.A83T	p.K28M	CTGAGCTTGCACA	.	403.0	187.0	525.0	0.0	.	28	.	.	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	hg19	15	62212341	62212341	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	VPS13C	NM_020821	exon57	c.A7402T	p.S2468C	CCATGCTGGCATA	.	126.0	45.0	128.0	0.0	.	506	.	.	Atlas-SNP
LACTB	114294	hgsc.bcm.edu	hg19	15	63419550	63419550	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	LACTB	NM_171846	exon4	c.616-2A>T	.	ACAATTAGGTTTC	.	198.0	81.0	214.0	0.0	.	29	.	.	Atlas-SNP
KIAA1024	23251	hgsc.bcm.edu	hg19	15	79749293	79749293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	KIAA1024	NM_015206	exon2	c.G804A	p.M268I	TTTGATGGCAGTG	.	132.0	54.0	141.0	0.0	.	146	.	.	Atlas-SNP
FLYWCH1	84256	hgsc.bcm.edu	hg19	16	2983205	2983205	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	FLYWCH1	NM_020912	exon5	c.A868C	p.K290Q	CTCTACAAGCGGG	.	42.0	10.0	46.0	0.0	.	27	.	.	Atlas-SNP
SLX4	84464	hgsc.bcm.edu	hg19	16	3634809	3634809	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	SLX4	NM_032444	exon13	c.C4700G	p.S1567C	ATAATGGAATACT	.	95.0	47.0	125.0	0.0	.	173	.	.	Atlas-SNP
CREBBP	1387	hgsc.bcm.edu	hg19	16	3807812	3807812	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CREBBP	NM_004380	exon18	c.A3607T	p.K1203X	GTACCTTGCGTCC	.	48.0	19.0	33.0	0.0	.	546	.	.	Atlas-SNP
ADCY9	115	hgsc.bcm.edu	hg19	16	4057436	4057436	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ADCY9	NM_001116	exon3	c.A1817T	p.Q606L	GTCCCCTGTCCCC	.	29.0	12.0	44.0	0.0	.	151	.	.	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	hg19	16	21086768	21086768	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	DNAH3	NM_017539	exon21	c.T3084A	p.T1028T	ACTCACAGTGTCC	.	220.0	105.0	260.0	0.0	.	1142	.	.	Atlas-SNP
TAOK2	9344	hgsc.bcm.edu	hg19	16	29990374	29990374	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	TAOK2	NM_004783	exon6	c.C432T	p.S144S	GCACTCCCACAAC	.	81.0	38.0	101.0	0.0	.	142	.	.	Atlas-SNP
LONP2	83752	hgsc.bcm.edu	hg19	16	48368263	48368263	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	LONP2	NM_031490	exon12	c.A1932C	p.E644D	GTATGAAATGGAG	.	62.0	46.0	130.0	0.0	.	63	.	.	Atlas-SNP
CDH8	1006	hgsc.bcm.edu	hg19	16	61689606	61689606	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CDH8	NM_001796	exon11	c.G1674A	p.L558L	CTTTGCCAAAATA	.	78.0	57.0	177.0	0.0	.	273	.	.	Atlas-SNP
AGRP	181	hgsc.bcm.edu	hg19	16	67517219	67517219	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	AGRP	NM_001138	exon2	c.T83A	p.M28K	CCCTCCATGGGGG	.	51.0	39.0	137.0	0.0	.	8	.	.	Atlas-SNP
IL34	146433	hgsc.bcm.edu	hg19	16	70690996	70690996	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	IL34	NM_152456	exon5	c.T374A	p.L125Q	AGACGCTGCTGCT	.	22.0	18.0	43.0	0.0	.	26	.	.	Atlas-SNP
DNAAF1	123872	hgsc.bcm.edu	hg19	16	84203529	84203529	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	DNAAF1	NM_178452	exon8	c.T1095A	p.P365P	GGAGCCTCCCGGG	.	58.0	44.0	130.0	0.0	.	81	.	.	Atlas-SNP
NXN	64359	hgsc.bcm.edu	hg19	17	722716	722716	+	Silent	SNP	G	G	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	NXN	NM_022463	exon5	c.C783G	p.A261A	CCGCCGGGCCTCA	.	52.0	42.0	106.0	0.0	.	32	.	.	Atlas-SNP
SDF2	6388	hgsc.bcm.edu	hg19	17	26982447	26982447	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	SDF2	NM_006923	exon2	c.A206T	p.Y69F	CTCCAGTAACTGT	.	123.0	58.0	132.0	0.0	.	17	.	.	Atlas-SNP
NSRP1	84081	hgsc.bcm.edu	hg19	17	28507943	28507943	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	NSRP1	NM_032141	exon6	c.A526T	p.K176X	GTAACCAAGCAGA	.	81.0	32.0	100.0	0.0	.	49	.	.	Atlas-SNP
COPRS	55352	hgsc.bcm.edu	hg19	17	30179202	30179202	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	.	NM_018405	exon4	c.A511T	p.K171X	CCATCTTGGAATA	.	140.0	54.0	157.0	0.0	.	.	.	.	Atlas-SNP
FNDC8	54752	hgsc.bcm.edu	hg19	17	33456507	33456507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	FNDC8	NM_017559	exon3	c.G652A	p.A218T	GAGGTGGCCAAGA	.	99.0	4.0	101.0	0.0	.	28	.	.	Atlas-SNP
GAST	2520	hgsc.bcm.edu	hg19	17	39871711	39871711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	GAST	NM_000805	exon2	c.T23C	p.V8A	TGTATGTGCTGAT	.	36.0	19.0	45.0	0.0	.	13	.	.	Atlas-SNP
ATXN7L3	56970	hgsc.bcm.edu	hg19	17	42271987	42271987	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ATXN7L3	NM_020218	exon11	c.A814T	p.S272C	CCTGGCTGTCAGT	.	42.0	14.0	59.0	0.0	.	31	.	.	Atlas-SNP
COL1A1	1277	hgsc.bcm.edu	hg19	17	48263006	48263006	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	COL1A1	NM_000088	exon51	c.C4252G	p.H1418D	CGGTGTGACTCTG	.	66.0	12.0	89.0	0.0	.	158	.	.	Atlas-SNP
CACNA1G	8913	hgsc.bcm.edu	hg19	17	48653340	48653340	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CACNA1G	NM_001256360	exon8	c.C1577G	p.A526G	GGGATGCCAATGG	.	88.0	7.0	97.0	0.0	.	659	.	.	Atlas-SNP
MFSD11	79157	hgsc.bcm.edu	hg19	17	74737121	74737121	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	MFSD11	NM_001242536	exon4	c.A235C	p.M79L	CTCTCTATGTTTG	.	59.0	29.0	87.0	0.0	.	47	.	.	Atlas-SNP
AZI1	22994	hgsc.bcm.edu	hg19	17	79167868	79167868	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	AZI1	NM_014984	exon18	c.A2179T	p.K727X	GGCTCTTGAGCCT	.	133.0	6.0	157.0	0.0	.	145	.	.	Atlas-SNP
SMCHD1	23347	hgsc.bcm.edu	hg19	18	2762178	2762178	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	SMCHD1	NM_015295	exon36	c.A4510T	p.N1504Y	GTTTCAAATGTTC	.	181.0	51.0	177.0	0.0	.	88	.	.	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	hg19	18	31319940	31319940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ASXL3	NM_030632	exon11	c.A2572G	p.T858A	GCTTCTACTGAAA	.	101.0	45.0	115.0	0.0	.	405	.	.	Atlas-SNP
ZNF396	252884	hgsc.bcm.edu	hg19	18	32953553	32953553	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ZNF396	NM_145756	exon3	c.A429G	p.G143G	CCTTCGTCCAAAA	.	72.0	4.0	73.0	0.0	.	28	.	.	Atlas-SNP
EPG5	57724	hgsc.bcm.edu	hg19	18	43497668	43497668	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	EPG5,NS,carcinoma,0,1	EPG5	NM_020964	exon17	c.A3215T	p.Q1072L	TAATACTGGCAAG	.	174.0	72.0	196.0	0.0	.	199	.	.	Atlas-SNP
KEAP1	9817	hgsc.bcm.edu	hg19	19	10610421	10610421	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	KEAP1	NM_012289	exon2	c.A289T	p.K97X	CCACCTTGTGGGC	.	48.0	36.0	90.0	0.0	.	182	.	.	Atlas-SNP
YIPF2	78992	hgsc.bcm.edu	hg19	19	11034009	11034009	+	Missense_Mutation	SNP	G	G	C	rs151256467	byfrequency;alternate_allele	TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	YIPF2,bladder,carcinoma,0,1	YIPF2	NM_024029	exon9	c.C909G	p.I303M	CAGCGCGATGTTT	.	65.0	34.0	108.0	0.0	.	13	.	G|1.000;A|0.000	Atlas-SNP
RFX1	5989	hgsc.bcm.edu	hg19	19	14104453	14104453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	RFX1	NM_002918	exon2	c.C203T	p.P68L	CCACCCGGTGGCT	.	105.0	7.0	123.0	0.0	.	63	.	.	Atlas-SNP
SYDE1	85360	hgsc.bcm.edu	hg19	19	15221086	15221086	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	SYDE1	NM_033025	exon3	c.T1002A	p.L334L	GGTGCTTGCGTGG	.	51.0	16.0	46.0	0.0	.	44	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	38973749	38973749	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	RYR1	NM_001042723	exon32	c.A4703T	p.Q1568L	GGAAGCAGAAGGT	.	78.0	35.0	85.0	0.0	.	708	.	.	Atlas-SNP
DEDD2	162989	hgsc.bcm.edu	hg19	19	42713986	42713986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	DEDD2	NM_133328	exon4	c.C455T	p.P152L	GTTGGGGGGGAGC	.	96.0	37.0	111.0	0.0	.	16	.	.	Atlas-SNP
ZNF226	7769	hgsc.bcm.edu	hg19	19	44674186	44674186	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	.	.	.	.	.	TTTCCTAGTTCAG	.	60.0	30.0	73.0	0.0	.	.	.	.	Atlas-SNP
ZNF285	26974	hgsc.bcm.edu	hg19	19	44891202	44891202	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	ZNF285,NS,carcinoma,0,2	ZNF285	NM_152354	exon4	c.G1205C	p.C402S	TCACTGCATTTGT	.	47.0	3.0	53.0	1.0	.	86	.	.	Atlas-SNP
ZNF285	26974	hgsc.bcm.edu	hg19	19	44891217	44891217	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	ZNF285,NS,carcinoma,0,2	ZNF285	NM_152354	exon4	c.A1190G	p.E397G	GGCTTCTCTCCAG	.	45.0	3.0	52.0	0.0	.	86	.	.	Atlas-SNP
EXOC3L2	90332	hgsc.bcm.edu	hg19	19	45731442	45731442	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	EXOC3L2	NM_138568	exon3	c.T173A	p.L58Q	TGGGCCAGGCTGC	.	85.0	34.0	125.0	0.0	.	30	.	.	Atlas-SNP
IGFL1	374918	hgsc.bcm.edu	hg19	19	46733033	46733033	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	IGFL1	NM_198541	exon1	c.T2A	p.M1K	GAGCCATGGCTCC	.	70.0	31.0	83.0	0.0	.	10	.	.	Atlas-SNP
DKKL1	27120	hgsc.bcm.edu	hg19	19	49868854	49868854	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	DKKL1	NM_014419	exon3	c.A272T	p.Q91L	AGAACCAGGAGCA	.	78.0	38.0	88.0	0.0	.	23	.	.	Atlas-SNP
CCDC155	147872	hgsc.bcm.edu	hg19	19	49901341	49901341	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CCDC155	NM_144688	exon7	c.T570A	p.A190A	GACAGCTGAGGAG	.	116.0	51.0	151.0	0.0	.	46	.	.	Atlas-SNP
SIGLEC11	114132	hgsc.bcm.edu	hg19	19	50463581	50463581	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	SIGLEC11	NM_052884	exon3	c.T558A	p.C186X	GGCTGGACATTTC	.	267.0	59.0	263.0	0.0	.	70	.	.	Atlas-SNP
DEFB129	140881	hgsc.bcm.edu	hg19	20	210384	210384	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	DEFB129	NM_080831	exon2	c.T524A	p.L175Q	CATCACTGGAGCT	.	36.0	12.0	52.0	0.0	.	24	.	.	Atlas-SNP
PAK7	57144	hgsc.bcm.edu	hg19	20	9560941	9560941	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	PAK7	NM_177990	exon4	c.A841T	p.T281S	GCATGGTGGGCTG	.	156.0	69.0	153.0	0.0	.	194	.	.	Atlas-SNP
C20orf26	26074	hgsc.bcm.edu	hg19	20	20071622	20071622	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	C20orf26	NM_015585	exon7	c.699+2T>A	.	GTGAGGTCAGTGA	.	95.0	40.0	118.0	0.0	.	188	.	.	Atlas-SNP
CEP250	11190	hgsc.bcm.edu	hg19	20	34091356	34091356	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CEP250	NM_007186	exon30	c.A5159T	p.Q1720L	AAGCACAGCGCGG	.	113.0	41.0	141.0	0.0	.	141	.	.	Atlas-SNP
SPINT3	10816	hgsc.bcm.edu	hg19	20	44141486	44141486	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	SPINT3	NM_006652	exon3	c.77-2A>T	.	AGTGTCTGAAGAG	.	44.0	21.0	58.0	0.0	.	12	.	.	Atlas-SNP
ARFGAP1	55738	hgsc.bcm.edu	hg19	20	61916216	61916216	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ARFGAP1	NM_018209	exon10	c.718-2A>T	.	TCCTACAGGCGTC	.	66.0	22.0	47.0	0.0	.	38	.	.	Atlas-SNP
COL20A1	57642	hgsc.bcm.edu	hg19	20	61943819	61943819	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	COL20A1	NM_020882	exon15	c.T1851A	p.S617S	TCTCTCTTCCTCC	.	56.0	19.0	48.0	0.0	.	137	.	.	Atlas-SNP
TCEA2	6919	hgsc.bcm.edu	hg19	20	62701907	62701907	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	TCEA2	NM_003195	exon8	c.C738T	p.H246H	AGAGCACCAGATG	.	230.0	70.0	233.0	0.0	.	22	.	.	Atlas-SNP
SLC7A4	6545	hgsc.bcm.edu	hg19	22	21384217	21384217	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	SLC7A4	NM_004173	exon3	c.T1406A	p.L469X	CCATCCAAGAAGC	.	81.0	29.0	93.0	0.0	.	50	.	.	Atlas-SNP
CSF2RB	1439	hgsc.bcm.edu	hg19	22	37333867	37333867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CSF2RB	NM_000395	exon14	c.G2017T	p.G673C	GGGGGAGGCCCTG	.	53.0	26.0	63.0	0.0	.	104	.	.	Atlas-SNP
LMF2	91289	hgsc.bcm.edu	hg19	22	50943406	50943406	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	LMF2	NM_033200	exon10	c.A1262T	p.Y421F	TAGGAGTACGGCA	.	105.0	36.0	147.0	0.0	.	40	.	.	Atlas-SNP
MXRA5	25878	hgsc.bcm.edu	hg19	X	3241470	3241470	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	MXRA5	NM_015419	exon5	c.A2256T	p.K752N	TGGTTCTTTTTCC	.	62.0	51.0	65.0	0.0	.	815	.	.	Atlas-SNP
GPM6B	2824	hgsc.bcm.edu	hg19	X	13803759	13803759	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	GPM6B	NM_001001995	exon3	c.A350T	p.H117L	AAGGCATGGTCAC	.	216.0	191.0	250.0	0.0	.	46	.	.	Atlas-SNP
GRPR	2925	hgsc.bcm.edu	hg19	X	16170727	16170727	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	GRPR	NM_005314	exon3	c.A1114T	p.S372C	ACCTTTAGCCTCA	.	68.0	53.0	83.0	0.0	.	51	.	.	Atlas-SNP
CYLC1	1538	hgsc.bcm.edu	hg19	X	83128059	83128059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CYLC1	NM_021118	exon4	c.T343C	p.Y115H	GCAGAATATAAAA	.	256.0	221.0	326.0	1.0	.	272	.	.	Atlas-SNP
L1CAM	3897	hgsc.bcm.edu	hg19	X	153128941	153128941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	L1CAM	NM_000425	exon26	c.G3521T	p.G1174V	TACTCGCCGAAGG	.	122.0	105.0	143.0	0.0	.	189	.	.	Atlas-SNP
ZNF248	57209	hgsc.bcm.edu	hg19	10	38121875	38121875	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ZNF248	NM_021045	exon6	c.409delT	p.Y137fs	.	.	153.0	63.0	199.0	0.0	.	61	.	.	Atlas-INDEL
ADORA2A	135	hgsc.bcm.edu	hg19	22	24836866	24836878	+	Frame_Shift_Del	DEL	GCCGGGGGAGCGG	GCCGGGGGAGCGG	-	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	GCCGGGGGAGCGG	GCCGGGGGAGCGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	ADORA2A	NM_000675	exon3	c.647_659del	p.216_220del	.	.	43.0	15.0	74.0	0.0	.	44	.	.	Atlas-INDEL
TP53	7157	hgsc.bcm.edu	hg19	17	7577595	7577598	+	Frame_Shift_Del	DEL	CAGT	CAGT	-	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	CAGT	CAGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	TP53_ENST00000545858,bile_duct,carcinoma,-1,1	TP53	NM_001126112	exon7	c.684_687del	p.228_229del	.	.	32.0	21.0	92.0	0.0	.	33396	.	.	Atlas-INDEL
KIAA0586	9786	hgsc.bcm.edu	hg19	14	58965625	58965627	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	TGG	TGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	KIAA0586	NM_001244189	exon29	c.4273_4275del	p.1425_1425del	.	.	103.0	31.0	104.0	0.0	.	180	.	.	Atlas-INDEL
CELSR2	1952	hgsc.bcm.edu	hg19	1	109812061	109812061	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	CELSR2	NM_001408	exon21	c.6827delC	p.P2276fs	.	.	43.0	21.0	62.0	0.0	.	228	.	.	Atlas-INDEL
NTRK1	4914	hgsc.bcm.edu	hg19	1	156838011	156838011	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	NTRK1	NM_002529	exon5	c.543delG	p.G181fs	.	.	59.0	11.0	38.0	0.0	.	287	.	.	Atlas-INDEL
LOC100131825	0	hgsc.bcm.edu	hg19	1	159166681	159166681	+	RNA	DEL	C	C	-	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	.	.	.	.	.	.	.	180.0	56.0	130.0	0.0	.	.	.	.	Atlas-INDEL
MASP2	10747	hgsc.bcm.edu	hg19	1	11087660	11087686	+	In_Frame_Del	DEL	CCTCCATATATACGCCCTCCTGTTGTG	CCTCCATATATACGCCCTCCTGTTGTG	-	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	CCTCCATATATACGCCCTCCTGTTGTG	CCTCCATATATACGCCCTCCTGTTGTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	MASP2	NM_006610	exon11	c.1318_1344del	p.440_448del	.	.	85.0	19.0	146.0	0.0	.	71	.	.	Atlas-INDEL
COL20A1	57642	hgsc.bcm.edu	hg19	20	61948029	61948038	+	Frame_Shift_Del	DEL	GACAAGACGG	GACAAGACGG	-	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	GACAAGACGG	GACAAGACGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	COL20A1	NM_020882	exon21	c.2648_2657del	p.883_886del	.	.	49.0	13.0	29.0	0.0	.	137	.	.	Atlas-INDEL
SPAG17	200162	hgsc.bcm.edu	hg19	1	118539254	118539254	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	SPAG17	NM_206996	exon33	c.4890delT	p.N1630fs	.	.	191.0	91.0	186.0	0.0	.	263	.	.	Atlas-INDEL
KIAA0586	9786	hgsc.bcm.edu	hg19	14	58965630	58965631	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-DD-AACQ-01A-11D-A40R-10	TCGA-DD-AACQ-10A-01D-A40U-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e5ad554e-26df-4b28-bf84-a689d77c2602	90e3ca3e-5517-4d7e-a1da-204704c66280	.	KIAA0586	NM_001244189	exon29	c.4278_4279del	p.1426_1427del	.	.	101.0	31.0	102.0	0.0	.	180	.	.	Atlas-INDEL
