Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
EMC1	23065	hgsc.bcm.edu	hg19	1	19571434	19571434	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	.	NM_001271427	exon2	c.G186T	p.V62V	TGCAATCACATTC	.	255.0	109.0	255.0	0.0	.	.	.	.	Atlas-SNP
NBPF3	84224	hgsc.bcm.edu	hg19	1	21799392	21799392	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	NBPF3	NM_001256416	exon6	c.A718C	p.K240Q	GTACAGGAATTAT	.	93.0	10.0	110.0	0.0	.	55	.	.	Atlas-SNP
RBBP4	5928	hgsc.bcm.edu	hg19	1	33145241	33145241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	RBBP4	NM_005610	exon12	c.G1213A	p.A405T	GGGCAGGCAGAGA	.	67.0	29.0	54.0	0.0	.	38	.	.	Atlas-SNP
RBBP4	5928	hgsc.bcm.edu	hg19	1	33145248	33145248	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	RBBP4	NM_005610	exon12	c.A1220T	p.N407I	CAGAGAACATTTA	.	71.0	29.0	53.0	0.0	.	38	.	.	Atlas-SNP
LRRC7	57554	hgsc.bcm.edu	hg19	1	70504162	70504162	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	LRRC7	NM_020794	exon19	c.A2541G	p.R847R	GACCAGAACCCCT	.	215.0	97.0	228.0	0.0	.	400	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158648305	158648305	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	SPTA1	NM_003126	exon6	c.C698G	p.P233R	ATTAAGGGTAGGT	.	123.0	61.0	68.0	0.0	.	720	.	.	Atlas-SNP
PFKFB2	5208	hgsc.bcm.edu	hg19	1	207228111	207228111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	PFKFB2	NM_001018053	exon2	c.A49G	p.K17E	GAAACCAAAACCC	.	165.0	40.0	71.0	0.0	.	70	.	.	Atlas-SNP
RD3	343035	hgsc.bcm.edu	hg19	1	211654728	211654728	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	RD3,colon,carcinoma,0,3	RD3	NM_183059	exon2	c.C30T	p.N10N	GGCCTCGTTCCAC	.	158.0	43.0	85.0	0.0	.	26	.	.	Atlas-SNP
OR2M2	391194	hgsc.bcm.edu	hg19	1	248343509	248343509	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	OR2M2	NM_001004688	exon1	c.C222G	p.I74M	GCTCATCTGCACC	.	360.0	85.0	158.0	0.0	.	149	.	.	Atlas-SNP
VWA3B	200403	hgsc.bcm.edu	hg19	2	98852884	98852884	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	VWA3B	NM_144992	exon18	c.G2460T	p.L820L	GTGGCTGGATGAC	.	162.0	63.0	163.0	0.0	.	138	.	.	Atlas-SNP
SCRN3	79634	hgsc.bcm.edu	hg19	2	175292534	175292534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	SCRN3	NM_024583	exon8	c.G1186T	p.V396L	CTTGATGTGGAGA	.	398.0	208.0	342.0	0.0	.	76	.	.	Atlas-SNP
GNAT1	2779	hgsc.bcm.edu	hg19	3	50232232	50232232	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	GNAT1	NM_144499	exon8	c.C897A	p.I299I	CTACATCAAGGTG	.	91.0	45.0	90.0	0.0	.	39	.	.	Atlas-SNP
SEMA3G	56920	hgsc.bcm.edu	hg19	3	52472194	52472194	+	Silent	SNP	G	G	T	rs371791154	alternate_allele	TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	SEMA3G,NS,carcinoma,0,1	SEMA3G	NM_020163	exon14	c.C1531A	p.R511R	CCAGCCGAGAGCC	.	138.0	55.0	138.0	0.0	.	58	.	.	Atlas-SNP
GOLGB1	2804	hgsc.bcm.edu	hg19	3	121416741	121416741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	GOLGB1	NM_001256486	exon13	c.G2629A	p.E877K	CAAGTTCCTTCTG	.	107.0	62.0	83.0	0.0	.	319	.	.	Atlas-SNP
EPHB3	2049	hgsc.bcm.edu	hg19	3	184298884	184298884	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	EPHB3	NM_004443	exon14	c.T2663A	p.I888N	CCCAGATTGTCAA	.	102.0	59.0	73.0	0.0	.	114	.	.	Atlas-SNP
CRMP1	1400	hgsc.bcm.edu	hg19	4	5853138	5853138	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	CRMP1	NM_001014809	exon5	c.C879T	p.S293S	TACCTGGCTGTCG	.	104.0	45.0	95.0	0.0	.	118	.	.	Atlas-SNP
DCAF4L1	285429	hgsc.bcm.edu	hg19	4	41984060	41984060	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	DCAF4L1	NM_001029955	exon1	c.A251T	p.D84V	ACAGCGACCAGCT	.	172.0	80.0	138.0	0.0	.	70	.	.	Atlas-SNP
PRDM5	11107	hgsc.bcm.edu	hg19	4	121706177	121706177	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	PRDM5	NM_018699	exon11	c.C1258G	p.Q420E	GTCTCTGTAAAGA	.	36.0	21.0	45.0	0.0	.	76	.	.	Atlas-SNP
TRIML1	339976	hgsc.bcm.edu	hg19	4	189061721	189061721	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	TRIML1	NM_178556	exon2	c.A448G	p.R150G	GTAAGGAGAAAGG	.	67.0	63.0	113.0	0.0	.	126	.	.	Atlas-SNP
TMED9	54732	hgsc.bcm.edu	hg19	5	177021211	177021211	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	TMED9	NM_017510	exon4	c.G483A	p.L161L	CAAGTTGAGTGAG	.	214.0	95.0	199.0	0.0	.	18	.	.	Atlas-SNP
OR2W1	26692	hgsc.bcm.edu	hg19	6	29012190	29012190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	OR2W1	NM_030903	exon1	c.A763G	p.I255V	AGATAATAGTTCC	.	200.0	98.0	168.0	0.0	.	36	.	.	Atlas-SNP
MTRF1L	54516	hgsc.bcm.edu	hg19	6	153316444	153316444	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	MTRF1L	NM_019041	exon3	c.T350G	p.L117R	ACCAAAAGTAAGA	.	174.0	71.0	134.0	0.0	.	21	.	.	Atlas-SNP
ZNF716	441234	hgsc.bcm.edu	hg19	7	57529237	57529237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	ZNF716	NM_001159279	exon4	c.G1070T	p.C357F	AAGAATGTGGGAA	.	172.0	76.0	134.0	0.0	.	207	.	.	Atlas-SNP
TECPR1	25851	hgsc.bcm.edu	hg19	7	97863048	97863048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	TECPR1	NM_015395	exon11	c.A1357G	p.T453A	CTGCGGTCCTGCC	.	162.0	54.0	113.0	0.0	.	77	.	.	Atlas-SNP
NEIL2	252969	hgsc.bcm.edu	hg19	8	11637363	11637363	+	Missense_Mutation	SNP	G	G	A	rs147360797		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	NEIL2	NM_001135746	exon3	c.G395A	p.R132H	GGCTGCGTGTCAG	.	49.0	39.0	81.0	0.0	.	14	.	G|1.000;A|0.000	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	hg19	8	110477316	110477316	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	PKHD1L1	NM_177531	exon49	c.T8255A	p.V2752E	ACTGTGTAGCTTT	.	265.0	77.0	158.0	0.0	.	522	.	.	Atlas-SNP
KLF9	687	hgsc.bcm.edu	hg19	9	73028153	73028153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	KLF9	NM_001206	exon1	c.G127A	p.V43M	TGGTCACCTCGCG	.	60.0	25.0	68.0	0.0	.	16	.	.	Atlas-SNP
ARID5B	84159	hgsc.bcm.edu	hg19	10	63852733	63852733	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	ARID5B	NM_032199	exon10	c.C3511G	p.Q1171E	AATCCTCAAGCTG	.	66.0	34.0	45.0	0.0	.	125	.	.	Atlas-SNP
DNA2	1763	hgsc.bcm.edu	hg19	10	70192255	70192255	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	DNA2	NM_001080449	exon11	c.C1659T	p.V553V	TGGAAGGACCGAC	.	346.0	135.0	328.0	0.0	.	76	.	.	Atlas-SNP
DUSP13	51207	hgsc.bcm.edu	hg19	10	76867822	76867822	+	Missense_Mutation	SNP	G	G	T	rs201419297	alternate_allele	TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	DUSP13	NM_001007271	exon2	c.C295A	p.P99T	AATCAGGGAGGTC	.	142.0	58.0	119.0	0.0	.	82	.	G|0.998;A|0.002	Atlas-SNP
CD81	975	hgsc.bcm.edu	hg19	11	2416745	2416745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	CD81	NM_004356	exon5	c.G454A	p.E152K	TTCCACGAGACGG	.	116.0	58.0	108.0	0.0	.	11	.	.	Atlas-SNP
IPO7	10527	hgsc.bcm.edu	hg19	11	9452513	9452513	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	IPO7	NM_006391	exon16	c.T1844G	p.I615S	ATACAATTGATAC	.	78.0	31.0	95.0	0.0	.	72	.	.	Atlas-SNP
LRRC4C	57689	hgsc.bcm.edu	hg19	11	40137427	40137427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	LRRC4C	NM_001258419	exon7	c.T416C	p.I139T	TTCGGGATGGTAG	.	123.0	45.0	107.0	0.0	.	190	.	.	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	hg19	11	78387281	78387281	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	.	NM_001098816	exon30	c.C5412T	p.I1804I	GTTGTCGATGGGC	.	71.0	29.0	67.0	0.0	.	.	.	.	Atlas-SNP
SPSB2	84727	hgsc.bcm.edu	hg19	12	6981831	6981831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	SPSB2	NM_032641	exon2	c.C235T	p.R79W	TACCCCGGGCCCC	.	71.0	29.0	72.0	0.0	.	11	.	.	Atlas-SNP
CUX2	23316	hgsc.bcm.edu	hg19	12	111744831	111744831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	CUX2	NM_015267	exon11	c.G965A	p.S322N	TCCAGAGCTCACT	.	65.0	24.0	57.0	0.0	.	145	.	.	Atlas-SNP
RPH3A	22895	hgsc.bcm.edu	hg19	12	113303258	113303258	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	RPH3A	NM_001143854	exon6	c.G270A	p.V90V	GAACGTGGCTGGA	.	97.0	40.0	113.0	0.0	.	98	.	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	hg19	12	124343733	124343733	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	DNAH10	NM_207437	exon37	c.A6313T	p.T2105S	ATGTTAACCCGCC	.	127.0	12.0	63.0	0.0	.	888	.	.	Atlas-SNP
FOXG1	2290	hgsc.bcm.edu	hg19	14	29237712	29237712	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	FOXG1,caecum,carcinoma,0,1	FOXG1	NM_005249	exon1	c.G1227A	p.L409L	CAACCTGCTCGCG	.	88.0	32.0	95.0	0.0	.	92	.	.	Atlas-SNP
PSMC6	5706	hgsc.bcm.edu	hg19	14	53194276	53194276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	PSMC6	NM_002806	exon14	c.G1153T	p.V385F	AAAGCAGTCAGAA	.	100.0	68.0	136.0	0.0	.	71	.	.	Atlas-SNP
KCNH5	27133	hgsc.bcm.edu	hg19	14	63483654	63483654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	KCNH5	NM_172375	exon2	c.G92A	p.G31E	GCATTTCCCAGTA	.	46.0	37.0	91.0	0.0	.	320	.	.	Atlas-SNP
TECPR2	9895	hgsc.bcm.edu	hg19	14	102918935	102918935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	TECPR2	NM_001172631	exon16	c.A3611G	p.H1204R	GCATGCACTGGAC	.	55.0	37.0	113.0	0.0	.	114	.	.	Atlas-SNP
SPTBN5	51332	hgsc.bcm.edu	hg19	15	42145951	42145951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	SPTBN5,colon,carcinoma,0,1	SPTBN5	NM_016642	exon58	c.G9704A	p.R3235Q	TGTAGCCGTGCCA	.	32.0	16.0	30.0	0.0	.	171	.	.	Atlas-SNP
ABCA3	21	hgsc.bcm.edu	hg19	16	2336731	2336731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	ABCA3	NM_001089	exon22	c.G3242A	p.R1081Q	GCGCTCCGGGGCT	.	138.0	28.0	68.0	0.0	.	176	.	.	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	hg19	16	2819139	2819139	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	SRRM2	NM_016333	exon12	c.C7875T	p.S2625S	CTCCTCCTCTTCT	.	108.0	7.0	54.0	0.0	.	263	.	.	Atlas-SNP
RBL2	5934	hgsc.bcm.edu	hg19	16	53488620	53488620	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	RBL2	NM_005611	exon8	c.G1045C	p.D349H	AATTTAGATGAGC	.	69.0	62.0	98.0	0.0	.	115	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578554	7578554	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	TP53_ENST00000545858,NS,carcinoma,0,1	TP53	NM_000546	exon5	c.T376A	p.Y126N	GGGAGTACTGTAG	.	51.0	47.0	54.0	0.0	.	33396	.	.	Atlas-SNP
MPRIP	23164	hgsc.bcm.edu	hg19	17	17061859	17061859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	MPRIP	NM_015134	exon14	c.G1589A	p.R530H	GGAGCCGCGCACG	.	114.0	66.0	100.0	0.0	.	87	.	.	Atlas-SNP
KRTAP4-3	85290	hgsc.bcm.edu	hg19	17	39324355	39324355	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	KRTAP4-3	NM_033187	exon1	c.T70A	p.C24S	GGCAGCAGCTCTC	.	160.0	17.0	117.0	0.0	.	40	.	.	Atlas-SNP
EFCAB13	124989	hgsc.bcm.edu	hg19	17	45507195	45507195	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	.	NM_152347	exon24	c.C2506G	p.L836V	CAGATACTCTTAG	.	108.0	9.0	87.0	0.0	.	.	.	.	Atlas-SNP
BSG	682	hgsc.bcm.edu	hg19	19	580781	580781	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	BSG	NM_001728	exon5	c.A791G	p.K264R	AGGACAAGGTGAG	.	94.0	6.0	64.0	0.0	.	48	.	.	Atlas-SNP
C19orf26	255057	hgsc.bcm.edu	hg19	19	1235018	1235018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	C19orf26	NM_152769	exon5	c.C437T	p.T146M	TCCTGCGTCTTGC	.	84.0	35.0	73.0	0.0	.	31	.	.	Atlas-SNP
SIGLEC10	89790	hgsc.bcm.edu	hg19	19	51920435	51920435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	SIGLEC10	NM_001171161	exon2	c.G322A	p.A108T	TCTGCGCGTCTCT	.	148.0	57.0	126.0	0.0	.	112	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	12496	12496	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	.	ENST00000361567	exon1	c.T160C	p.F54L	ACAATATTCATGT	.	14.0	4.0	10.0	0.0	.	.	.	.	Atlas-SNP
GORAB	92344	hgsc.bcm.edu	hg19	1	170511631	170511636	+	Frame_Shift_Del	DEL	GGCAAG	GGCAAG	-	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	GGCAAG	GGCAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	GORAB	NM_152281	exon3	c.495_498del	p.165_166del	.	.	524.0	68.0	244.0	0.0	.	41	.	.	Atlas-INDEL
GEMIN2	8487	hgsc.bcm.edu	hg19	14	39601242	39601244	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-DD-AACS-01A-11D-A40R-10	TCGA-DD-AACS-10A-01D-A40U-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8d9f3207-beef-4207-90c3-219a58374551	957b73a6-e2d4-4b9b-b4c1-b4a9baa467c7	.	.	NM_003616	exon8	c.713_715del	p.238_239del	.	.	48.0	17.0	46.0	0.0	.	.	.	.	Atlas-INDEL
