Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
KIAA1751	85452	hgsc.bcm.edu	hg19	1	1887238	1887238	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	KIAA1751	NM_001080484	exon18	c.A2068T	p.S690C	AGAAGCTGGTGGC	.	71.0	17.0	49.0	0.0	.	92	.	.	Atlas-SNP
THAP3	90326	hgsc.bcm.edu	hg19	1	6685353	6685353	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	THAP3	NM_001195753	exon2	c.74+1G>T	.	CCACCGGTAAGAG	.	56.0	23.0	75.0	0.0	.	43	.	.	Atlas-SNP
AIM1L	55057	hgsc.bcm.edu	hg19	1	26670848	26670848	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	AIM1L	NM_001039775	exon2	c.C2301T	p.F767F	ATCCAGGAATATC	.	25.0	11.0	21.0	0.0	.	98	.	.	Atlas-SNP
COL16A1	1307	hgsc.bcm.edu	hg19	1	32163575	32163575	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	COL16A1	NM_001856	exon6	c.C589T	p.R197X	GTCGTCGGGGCCC	.	166.0	14.0	170.0	0.0	.	137	.	.	Atlas-SNP
MFSD2A	84879	hgsc.bcm.edu	hg19	1	40431684	40431684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	MFSD2A	NM_001136493	exon6	c.A751G	p.T251A	AGGGAAACGGTGA	.	143.0	38.0	141.0	0.0	.	53	.	.	Atlas-SNP
FOXD3	27022	hgsc.bcm.edu	hg19	1	63789072	63789072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	FOXD3	NM_012183	exon1	c.G343A	p.A115T	GGCGGCGCGAGCG	.	50.0	4.0	49.0	0.0	.	15	.	.	Atlas-SNP
PTPN22	26191	hgsc.bcm.edu	hg19	1	114372603	114372603	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PTPN22	NM_015967	exon17	c.C2102G	p.T701S	TCTAGAGTTCTTT	.	228.0	49.0	211.0	0.0	.	90	.	.	Atlas-SNP
IGSF3	3321	hgsc.bcm.edu	hg19	1	117122106	117122106	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	IGSF3	NM_001542	exon11	c.A3302T	p.H1101L	TCCACATGGCAGG	.	92.0	24.0	103.0	0.0	.	294	.	.	Atlas-SNP
SSR2	6746	hgsc.bcm.edu	hg19	1	155989929	155989929	+	Silent	SNP	A	A	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	SSR2	NM_003145	exon2	c.T30G	p.A10A	AAATAGAGCCAAC	.	178.0	27.0	100.0	0.0	.	20	.	.	Atlas-SNP
C1orf61	10485	hgsc.bcm.edu	hg19	1	156384479	156384479	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	C1orf61	NM_006365	exon4	c.A138T	p.R46S	TGTGGCTCTATCG	.	123.0	14.0	79.0	0.0	.	15	.	.	Atlas-SNP
FCRLB	127943	hgsc.bcm.edu	hg19	1	161697120	161697120	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	FCRLB	NM_001002901	exon6	c.A949T	p.R317X	TCCTTCAGAAAGC	.	251.0	163.0	127.0	0.0	.	35	.	.	Atlas-SNP
KIFAP3	22920	hgsc.bcm.edu	hg19	1	170001030	170001030	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	KIFAP3	NM_014970	exon8	c.C838T	p.R280X	TACCTCGTAATAG	.	180.0	113.0	93.0	0.0	.	102	.	.	Atlas-SNP
FMO1	2326	hgsc.bcm.edu	hg19	1	171236812	171236812	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	FMO1	NM_002021	exon3	c.T263A	p.L88Q	AATTCCTGGAATA	.	152.0	90.0	90.0	0.0	.	79	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181767884	181767884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	CACNA1E,NS,carcinoma,0,1	CACNA1E	NM_001205293	exon48	c.C6856T	p.R2286W	CGGCGGCGGAGGC	.	104.0	24.0	69.0	0.0	.	778	.	.	Atlas-SNP
PRG4	10216	hgsc.bcm.edu	hg19	1	186266079	186266079	+	Silent	SNP	T	T	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PRG4	NM_001127708	exon2	c.T72G	p.S24S	TTCATCTCAAGGT	.	133.0	69.0	91.0	0.0	.	259	.	.	Atlas-SNP
PLXNA2	5362	hgsc.bcm.edu	hg19	1	208212331	208212331	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PLXNA2	NM_025179	exon26	c.4501-2A>T	.	AGGATCTACAAGT	.	201.0	34.0	92.0	0.0	.	178	.	.	Atlas-SNP
PTPN14	5784	hgsc.bcm.edu	hg19	1	214538000	214538000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PTPN14	NM_005401	exon18	c.A3290G	p.Q1097R	ACCGACTGGATCT	.	189.0	83.0	92.0	0.0	.	168	.	.	Atlas-SNP
NUP133	55746	hgsc.bcm.edu	hg19	1	229584906	229584906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	NUP133	NM_018230	exon24	c.T3212C	p.L1071P	ATTTCCAGTTTTA	.	96.0	45.0	55.0	0.0	.	111	.	.	Atlas-SNP
OR2T12	127064	hgsc.bcm.edu	hg19	1	248458135	248458135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	OR2T12	NM_001004692	exon1	c.T746C	p.F249S	CCATAAAAGAGTC	.	305.0	30.0	169.0	0.0	.	113	.	.	Atlas-SNP
MYT1L	23040	hgsc.bcm.edu	hg19	2	1920989	1920989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	MYT1L	NM_015025	exon11	c.G1600A	p.V534I	GAGGGACCCTATC	.	101.0	24.0	90.0	0.0	.	241	.	.	Atlas-SNP
PLEKHH2	130271	hgsc.bcm.edu	hg19	2	43939487	43939487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PLEKHH2	NM_172069	exon15	c.G2425A	p.E809K	CAGCCTGAGGGCA	.	102.0	21.0	86.0	0.0	.	156	.	.	Atlas-SNP
PREPL	9581	hgsc.bcm.edu	hg19	2	44559599	44559599	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PREPL	NM_001171603	exon9	c.A1352C	p.K451T	CCTACCTTGCTTT	.	94.0	32.0	94.0	0.0	.	69	.	.	Atlas-SNP
LHCGR	3973	hgsc.bcm.edu	hg19	2	48915582	48915582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	LHCGR	NM_000233	exon11	c.C1354A	p.L452I	CAGAAAGTTCACT	.	103.0	28.0	97.0	0.0	.	154	.	.	Atlas-SNP
EIF2AK3	9451	hgsc.bcm.edu	hg19	2	88887518	88887518	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	EIF2AK3	NM_004836	exon8	c.A1411G	p.I471V	GCAAGATTGAAAG	.	797.0	188.0	785.0	0.0	.	160	.	.	Atlas-SNP
RGPD4	285190	hgsc.bcm.edu	hg19	2	108453058	108453058	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	RGPD4	NM_182588	exon2	c.A73C	p.K25Q	TTTTAGAAGTCAA	.	300.0	85.0	288.0	0.0	.	112	.	.	Atlas-SNP
CCDC74B	91409	hgsc.bcm.edu	hg19	2	130897154	130897154	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	CCDC74B	NM_207310	exon8	c.C1117A	p.R373R	GGCGCCGTTTCTG	.	167.0	44.0	186.0	0.0	.	27	.	.	Atlas-SNP
GALNT3	2591	hgsc.bcm.edu	hg19	2	166615986	166615986	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	GALNT3	NM_004482	exon5	c.G933A	p.L311L	CGTGTTCAGATCT	.	135.0	31.0	128.0	0.0	.	65	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179610419	179610419	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	TTN	NM_133379	exon46	c.A16708T	p.N5570Y	ACAGGTTATGGAA	.	108.0	31.0	123.0	0.0	.	18412	.	.	Atlas-SNP
ZNF804A	91752	hgsc.bcm.edu	hg19	2	185801445	185801445	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ZNF804A	NM_194250	exon4	c.C1322G	p.S441X	GGCCATCAGAAAT	.	308.0	85.0	323.0	0.0	.	322	.	.	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210683819	210683819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	UNC80	NM_182587	exon12	c.T1796C	p.L599P	GGAAACTCTGCAA	.	162.0	34.0	146.0	0.0	.	280	.	.	Atlas-SNP
OBSL1	23363	hgsc.bcm.edu	hg19	2	220424039	220424039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	OBSL1	NM_001173431	exon9	c.G3134A	p.R1045H	ACCAGGCGGCAGC	.	127.0	18.0	114.0	0.0	.	120	.	.	Atlas-SNP
FAM124B	79843	hgsc.bcm.edu	hg19	2	225244553	225244553	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	FAM124B	NM_001122779	exon2	c.A1105T	p.I369F	TTATGATGGTCAA	.	129.0	44.0	127.0	0.0	.	71	.	.	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	hg19	2	228855727	228855727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	SPHKAP	NM_001142644	exon11	c.A4948G	p.R1650G	CAATTCTGTTTTC	.	57.0	17.0	64.0	0.0	.	750	.	.	Atlas-SNP
ILKAP	80895	hgsc.bcm.edu	hg19	2	239079292	239079292	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ILKAP	NM_030768	exon12	c.G1064C	p.G355A	GACTTCCCTTCCC	.	235.0	65.0	218.0	0.0	.	42	.	.	Atlas-SNP
CMTM6	54918	hgsc.bcm.edu	hg19	3	32544113	32544113	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	CMTM6	NM_017801	exon1	c.A125T	p.K42M	AAGCCCTTGAGAA	.	162.0	57.0	103.0	0.0	.	5	.	.	Atlas-SNP
DLEC1	9940	hgsc.bcm.edu	hg19	3	38157966	38157966	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	DLEC1	NM_007337	exon28	c.C3879T	p.T1293T	GGAGACCTATGTT	.	67.0	19.0	59.0	0.0	.	278	.	.	Atlas-SNP
ULK4	54986	hgsc.bcm.edu	hg19	3	41977412	41977412	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ULK4	NM_017886	exon4	c.A259C	p.I87L	GAGCAATAACTGT	.	90.0	27.0	70.0	0.0	.	150	.	.	Atlas-SNP
TGM4	7047	hgsc.bcm.edu	hg19	3	44938212	44938212	+	Missense_Mutation	SNP	T	T	A	rs142027211		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	TGM4	NM_003241	exon6	c.T561A	p.N187K	GAAAAATGTCCTG	.	92.0	21.0	86.0	0.0	.	82	.	T|1.000;A|0.000	Atlas-SNP
RBM5	10181	hgsc.bcm.edu	hg19	3	50137458	50137458	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	RBM5	NM_005778	exon5	c.A383C	p.D128A	CTGCGGATGTGAG	.	102.0	31.0	116.0	0.0	.	76	.	.	Atlas-SNP
RBM5	10181	hgsc.bcm.edu	hg19	3	50143082	50143082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	RBM5	NM_005778	exon10	c.A795G	p.I265M	CCTCATAAAAGAC	.	128.0	34.0	115.0	0.0	.	76	.	.	Atlas-SNP
SLMAP	7871	hgsc.bcm.edu	hg19	3	57882301	57882301	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	SLMAP	NM_007159	exon13	c.G1322C	p.S441T	AAAAAAGCAGTGA	.	417.0	127.0	360.0	0.0	.	46	.	.	Atlas-SNP
EPHA6	285220	hgsc.bcm.edu	hg19	3	96945199	96945199	+	Silent	SNP	T	T	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	EPHA6	NM_001080448	exon4	c.T1206G	p.S402S	AACTTCTGTCTGT	.	111.0	27.0	126.0	0.0	.	439	.	.	Atlas-SNP
OR5AC2	81050	hgsc.bcm.edu	hg19	3	97806627	97806627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	OR5AC2	NM_054106	exon1	c.T611C	p.F204S	TTATTTTTGGTGC	.	94.0	25.0	67.0	0.0	.	64	.	.	Atlas-SNP
UPK1B	7348	hgsc.bcm.edu	hg19	3	118906777	118906777	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	UPK1B	NM_006952	exon3	c.A225G	p.L75L	TGTTCTAGGCATT	.	115.0	35.0	120.0	0.0	.	27	.	.	Atlas-SNP
KALRN	8997	hgsc.bcm.edu	hg19	3	124207122	124207122	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	KALRN	NM_003947	exon29	c.A4350G	p.P1450P	TGTCCCAAAGAAA	.	105.0	23.0	128.0	0.0	.	556	.	.	Atlas-SNP
CCDC37	348807	hgsc.bcm.edu	hg19	3	126137512	126137512	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	CCDC37	NM_182628	exon7	c.A545T	p.E182V	CCAAAGAGGAGGC	.	77.0	22.0	86.0	0.0	.	69	.	.	Atlas-SNP
GATA2	2624	hgsc.bcm.edu	hg19	3	128205213	128205213	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	GATA2	NM_001145661	exon5	c.230-2A>T	.	GCGGGCTGCGGGC	.	42.0	17.0	51.0	0.0	.	122	.	.	Atlas-SNP
PRR23A	729627	hgsc.bcm.edu	hg19	3	138724450	138724450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PRR23A	NM_001134659	exon1	c.C661T	p.R221C	GAAGGCGGAATTC	.	228.0	55.0	206.0	0.0	.	35	.	.	Atlas-SNP
PIK3CA	5290	hgsc.bcm.edu	hg19	3	178916869	178916869	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PIK3CA	NM_006218	exon2	c.A256T	p.T86S	GATGAAACAAGAC	.	285.0	77.0	271.0	0.0	.	8460	.	.	Atlas-SNP
JAKMIP1	152789	hgsc.bcm.edu	hg19	4	6027974	6027974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	JAKMIP1	NM_001099433	exon21	c.C2477T	p.A826V	ATGAATGCTAGTG	.	550.0	152.0	560.0	1.0	.	250	.	.	Atlas-SNP
PDGFRA	5156	hgsc.bcm.edu	hg19	4	55143655	55143655	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PDGFRA	NM_006206	exon13	c.A1887G	p.L629L	GATGCTAAAACGT	.	137.0	35.0	146.0	0.0	.	1583	.	.	Atlas-SNP
AGPAT9	84803	hgsc.bcm.edu	hg19	4	84516038	84516038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	AGPAT9	NM_001256421	exon8	c.G779T	p.R260I	TTCAGAGAGCTAT	.	78.0	22.0	74.0	0.0	.	41	.	.	Atlas-SNP
EMCN	51705	hgsc.bcm.edu	hg19	4	101386642	101386642	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	EMCN	NM_001159694	exon4	c.T314C	p.V105A	ACTGTTACGTTTG	.	108.0	34.0	99.0	0.0	.	37	.	.	Atlas-SNP
MAML3	55534	hgsc.bcm.edu	hg19	4	140640793	140640793	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	MAML3	NM_018717	exon6	c.T3089A	p.L1030H	CCCGGGAGCGATG	.	48.0	10.0	43.0	0.0	.	192	.	.	Atlas-SNP
SCOC	60592	hgsc.bcm.edu	hg19	4	141294779	141294779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	SCOC	NM_001153484	exon1	c.G89A	p.R30Q	GTGGGCGGAGTGG	.	61.0	14.0	67.0	0.0	.	11	.	.	Atlas-SNP
FBXO8	26269	hgsc.bcm.edu	hg19	4	175162348	175162348	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	FBXO8	NM_012180	exon4	c.A478T	p.K160X	TACCCTTGGACAT	.	97.0	29.0	107.0	0.0	.	34	.	.	Atlas-SNP
IRX4	50805	hgsc.bcm.edu	hg19	5	1879844	1879844	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	IRX4	NM_016358	exon4	c.C510T	p.P170P	CTTGGTGGGGTAG	.	104.0	7.0	107.0	0.0	.	45	.	.	Atlas-SNP
ZNF622	90441	hgsc.bcm.edu	hg19	5	16463667	16463667	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ZNF622	NM_033414	exon2	c.C810T	p.H270H	GGTCATGTGAGCC	.	166.0	48.0	146.0	0.0	.	49	.	.	Atlas-SNP
NNT	23530	hgsc.bcm.edu	hg19	5	43702725	43702725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	NNT	NM_182977	exon21	c.A2998G	p.T1000A	ATAGATACTGATT	.	55.0	8.0	44.0	0.0	.	92	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	89943496	89943496	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	GPR98	NM_032119	exon17	c.A3204G	p.R1068R	AAGTAGACAGCAG	.	125.0	38.0	140.0	0.0	.	605	.	.	Atlas-SNP
GIN1	54826	hgsc.bcm.edu	hg19	5	102432254	102432254	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	GIN1	NM_017676	exon7	c.A1285T	p.S429C	GTTCACTGGATTC	.	121.0	34.0	119.0	0.0	.	53	.	.	Atlas-SNP
AQPEP	0	hgsc.bcm.edu	hg19	5	115336354	115336354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	.	NM_173800	exon9	c.T1646C	p.M549T	TTCAAATGGTAAT	.	99.0	27.0	97.0	0.0	.	.	.	.	Atlas-SNP
PCDHB12	56124	hgsc.bcm.edu	hg19	5	140589674	140589674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PCDHB12	NM_018932	exon1	c.A1195G	p.N399D	GTAAATAATTACT	.	190.0	46.0	156.0	0.0	.	179	.	.	Atlas-SNP
LARS	51520	hgsc.bcm.edu	hg19	5	145512586	145512586	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	LARS	NM_020117	exon23	c.A2271T	p.E757D	CATGGCTTCCACA	.	121.0	38.0	142.0	0.0	.	100	.	.	Atlas-SNP
WWC1	23286	hgsc.bcm.edu	hg19	5	167833201	167833201	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	WWC1	NM_015238	exon6	c.591-2A>T	.	TCTCCTAGAATCG	.	122.0	45.0	104.0	0.0	.	98	.	.	Atlas-SNP
PANK3	79646	hgsc.bcm.edu	hg19	5	167986088	167986088	+	Silent	SNP	T	T	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PANK3	NM_024594	exon6	c.A1011C	p.A337A	ATCCAGTGCATAT	.	108.0	28.0	115.0	0.0	.	39	.	.	Atlas-SNP
ADAMTS2	9509	hgsc.bcm.edu	hg19	5	178541174	178541174	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ADAMTS2	NM_014244	exon22	c.T3330A	p.P1110P	CTTCCCAGGCGGT	.	294.0	54.0	135.0	0.0	.	190	.	.	Atlas-SNP
STK19	8859	hgsc.bcm.edu	hg19	6	31940408	31940408	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	STK19	NM_032454	exon3	c.C441T	p.R147R	GGCGCGCGCGGCT	.	108.0	21.0	93.0	0.0	.	33	.	.	Atlas-SNP
HLA-DOB	3112	hgsc.bcm.edu	hg19	6	32782304	32782304	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	HLA-DOB	NM_002120	exon3	c.A436T	p.T146S	AGCCTGTCACAGA	.	165.0	27.0	139.0	0.0	.	17	.	.	Atlas-SNP
FTSJD2	23070	hgsc.bcm.edu	hg19	6	37411922	37411922	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	FTSJD2	NM_015050	exon3	c.T281A	p.L94H	AGAAGCTTATGGT	.	77.0	23.0	55.0	0.0	.	64	.	.	Atlas-SNP
TTBK1	84630	hgsc.bcm.edu	hg19	6	43250465	43250465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	TTBK1,NS,carcinoma,0,1	TTBK1	NM_032538	exon14	c.G1987A	p.V663M	TTGCAGGTGTTCT	.	89.0	26.0	56.0	0.0	.	124	.	.	Atlas-SNP
RUNX2	860	hgsc.bcm.edu	hg19	6	45390466	45390466	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	RUNX2	NM_001024630	exon3	c.A195G	p.Q65Q	GCAGCAACAGCAG	.	69.0	4.0	67.0	0.0	.	128	.	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	hg19	6	51613247	51613247	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PKHD1	NM_170724	exon58	c.A9167T	p.Q3056L	TAGGCCTGACCCT	.	64.0	20.0	57.0	0.0	.	927	.	.	Atlas-SNP
GOPC	57120	hgsc.bcm.edu	hg19	6	117884420	117884420	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	GOPC	NM_020399	exon9	c.T1386C	p.Y462Y	AATTTAATAAGAT	.	43.0	18.0	38.0	0.0	.	29	.	.	Atlas-SNP
ADGB	79747	hgsc.bcm.edu	hg19	6	147122997	147122997	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ADGB	NM_024694	exon35	c.T4668C	p.D1556D	AACAGATGAATTG	.	251.0	106.0	217.0	0.0	.	93	.	.	Atlas-SNP
KATNA1	11104	hgsc.bcm.edu	hg19	6	149959640	149959640	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	KATNA1	NM_007044	exon2	c.A44T	p.E15V	GCATATTCACGAG	.	140.0	57.0	104.0	0.0	.	34	.	.	Atlas-SNP
POLM	27434	hgsc.bcm.edu	hg19	7	44119332	44119332	+	Silent	SNP	C	C	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	POLM	NM_013284	exon4	c.G480C	p.L160L	TATCTCCAGAGCC	.	42.0	23.0	36.0	0.0	.	50	.	.	Atlas-SNP
PTPN12	5782	hgsc.bcm.edu	hg19	7	77236577	77236577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PTPN12	NM_002835	exon9	c.A721G	p.I241V	GGTGCCATTTGTG	.	195.0	41.0	163.0	0.0	.	83	.	.	Atlas-SNP
SGCE	8910	hgsc.bcm.edu	hg19	7	94252667	94252667	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	SGCE	NM_001099401	exon4	c.A433T	p.N145Y	TCAAATTATGCCT	.	314.0	77.0	239.0	0.0	.	68	.	.	Atlas-SNP
ACHE	43	hgsc.bcm.edu	hg19	7	100490380	100490380	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ACHE	NM_000665	exon3	c.C1128T	p.G376G	GCTGAAGCCTGGG	.	67.0	24.0	70.0	0.0	.	80	.	.	Atlas-SNP
KCNH2	3757	hgsc.bcm.edu	hg19	7	150671846	150671846	+	Missense_Mutation	SNP	A	A	G	rs199473495		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	KCNH2	NM_000238	exon2	c.T260C	p.L87P	GCGCCCAGCAGTG	.	213.0	88.0	168.0	0.0	.	157	.	.	Atlas-SNP
VIPR2	7434	hgsc.bcm.edu	hg19	7	158823365	158823365	+	Missense_Mutation	SNP	T	T	A	rs184356169	by1000genomes;alternate_allele	TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	VIPR2	NM_003382	exon13	c.A1259T	p.Q420L	TGGAACTGCAGGG	.	206.0	82.0	181.0	0.0	.	53	.	T|0.999;G|0.001	Atlas-SNP
CHRNA2	1135	hgsc.bcm.edu	hg19	8	27320996	27320996	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	CHRNA2	NM_000742	exon6	c.T964A	p.S322T	CCAGCGAGGTGGA	.	175.0	34.0	148.0	0.0	.	48	.	.	Atlas-SNP
FGFR1	2260	hgsc.bcm.edu	hg19	8	38271457	38271457	+	Silent	SNP	G	G	A	rs369782405		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	Q7Z2S2_HUMAN,NS,carcinoma,0,4	FGFR1	NM_001174067	exon18	c.C2364T	p.I788I	GGCCACGATGCGG	.	120.0	45.0	91.0	0.0	.	284	.	.	Atlas-SNP
OXR1	55074	hgsc.bcm.edu	hg19	8	107751706	107751706	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	OXR1	NM_001198532	exon12	c.A2061T	p.I687I	AGACATAAATTCA	.	151.0	26.0	95.0	0.0	.	190	.	.	Atlas-SNP
ATAD2	29028	hgsc.bcm.edu	hg19	8	124383232	124383232	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ATAD2	NM_014109	exon7	c.640-2A>T	.	TTGCTCTAAAAAT	.	121.0	62.0	57.0	0.0	.	160	.	.	Atlas-SNP
MAFA	389692	hgsc.bcm.edu	hg19	8	144512455	144512455	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	MAFA	NM_201589	exon1	c.T122A	p.F41Y	TGGCAGAAGCGCT	.	62.0	12.0	41.0	0.0	.	9	.	.	Atlas-SNP
CPSF1	29894	hgsc.bcm.edu	hg19	8	145623168	145623168	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	CPSF1	NM_013291	exon21	c.2073+1G>A	.	GGCCTACATGGTG	.	82.0	14.0	53.0	0.0	.	92	.	.	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	hg19	9	2115820	2115820	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	SMARCA2	NM_003070	exon25	c.3457-2A>T	.	CCAAACAGGATCT	.	321.0	106.0	318.0	0.0	.	313	.	.	Atlas-SNP
PTPRD	5789	hgsc.bcm.edu	hg19	9	8527349	8527349	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PTPRD	NM_130392	exon5	c.T546C	p.S182S	ACCAATAGATTCT	.	807.0	38.0	791.0	0.0	.	1348	.	.	Atlas-SNP
CCDC171	203238	hgsc.bcm.edu	hg19	9	15744565	15744565	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	.	NM_173550	exon17	c.A2344T	p.K782X	GAGGAAAAGAAGC	.	198.0	60.0	188.0	0.0	.	.	.	.	Atlas-SNP
RASEF	158158	hgsc.bcm.edu	hg19	9	85615446	85615446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	RASEF	NM_152573	exon11	c.G1477T	p.D493Y	CCACATCTTCTAA	.	92.0	26.0	115.0	0.0	.	69	.	.	Atlas-SNP
KCNT1	57582	hgsc.bcm.edu	hg19	9	138646978	138646978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	KCNT1	NM_020822	exon6	c.T503C	p.L168P	CTATTCTGTGGGT	.	42.0	12.0	63.0	0.0	.	139	.	.	Atlas-SNP
MCM10	55388	hgsc.bcm.edu	hg19	10	13243528	13243528	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	MCM10_ENST00000361282,lower_third,carcinoma,0,1	MCM10	NM_182751	exon17	c.C2349A	p.C783X	GACATGCAAGACG	.	67.0	15.0	70.0	0.0	.	76	.	.	Atlas-SNP
COMMD3-BMI1	0	hgsc.bcm.edu	hg19	10	22605412	22605412	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	.	NM_001204062	exon1	c.C66T	p.S22S	CGACTCCAACGCC	.	116.0	30.0	100.0	0.0	.	.	.	.	Atlas-SNP
ZEB1	6935	hgsc.bcm.edu	hg19	10	31816120	31816120	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ZEB1	NM_001174096	exon9	c.A3306T	p.Q1102H	AAGTCAAGCAAGC	.	66.0	17.0	53.0	0.0	.	173	.	.	Atlas-SNP
ZNF365	22891	hgsc.bcm.edu	hg19	10	64148324	64148324	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ZNF365	NM_014951	exon3	c.A913T	p.S305C	GATCTCAGCGGGC	.	59.0	12.0	42.0	0.0	.	174	.	.	Atlas-SNP
TET1	80312	hgsc.bcm.edu	hg19	10	70446431	70446431	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	TET1	NM_030625	exon11	c.A5371T	p.N1791Y	ACAACAAACAACA	.	143.0	49.0	124.0	0.0	.	255	.	.	Atlas-SNP
PRF1	5551	hgsc.bcm.edu	hg19	10	72358753	72358753	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PRF1	NM_001083116	exon3	c.T724A	p.C242S	GCTCGCAGGTGCG	.	83.0	22.0	110.0	0.0	.	64	.	.	Atlas-SNP
IFIT3	3437	hgsc.bcm.edu	hg19	10	91099326	91099326	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	IFIT3	NM_001549	exon2	c.A914T	p.E305V	ATAAAGAGATGAT	.	111.0	31.0	116.0	0.0	.	36	.	.	Atlas-SNP
OPALIN	93377	hgsc.bcm.edu	hg19	10	98111161	98111161	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	OPALIN	NM_033207	exon3	c.T46A	p.S16T	CAGGAGAGGACGT	.	677.0	210.0	606.0	0.0	.	31	.	.	Atlas-SNP
C10orf12	26148	hgsc.bcm.edu	hg19	10	98741566	98741566	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	C10orf12	NM_015652	exon1	c.A419T	p.K140M	CCATCAAGACAGC	.	148.0	37.0	124.0	0.0	.	94	.	.	Atlas-SNP
ZDHHC16	84287	hgsc.bcm.edu	hg19	10	99213301	99213301	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ZDHHC16	NM_198046	exon7	c.T571A	p.C191S	AACAATTGTGTGG	.	73.0	30.0	69.0	0.0	.	25	.	.	Atlas-SNP
SEC31B	25956	hgsc.bcm.edu	hg19	10	102250575	102250575	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	SEC31B	NM_015490	exon20	c.A2538T	p.A846A	GGAAGGTGCCAAG	.	72.0	28.0	81.0	0.0	.	84	.	.	Atlas-SNP
GBF1	8729	hgsc.bcm.edu	hg19	10	104018779	104018779	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	GBF1	NM_001199378	exon2	c.C84A	p.T28T	GAGCACCCATACA	.	138.0	36.0	158.0	0.0	.	142	.	.	Atlas-SNP
OR56A5	390084	hgsc.bcm.edu	hg19	11	5989217	5989217	+	Silent	SNP	T	T	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	.	NM_001146033	exon1	c.A508C	p.R170R	AGTATCTGAGTCG	.	73.0	21.0	79.0	0.0	.	.	.	.	Atlas-SNP
TRIM66	9866	hgsc.bcm.edu	hg19	11	8662353	8662353	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	TRIM66	NM_014818	exon9	c.T1134C	p.H378H	TGGTGGATGAGGG	.	73.0	16.0	65.0	0.0	.	45	.	.	Atlas-SNP
CD44	960	hgsc.bcm.edu	hg19	11	35219675	35219675	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	CD44	NM_000610	exon7	c.T804A	p.S268S	TACGTCTTCAAAT	.	120.0	34.0	115.0	0.0	.	48	.	.	Atlas-SNP
NUP160	23279	hgsc.bcm.edu	hg19	11	47823484	47823484	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	NUP160	NM_015231	exon24	c.2776-2A>G	.	AGAGCCTGGAGAA	.	107.0	36.0	101.0	0.0	.	116	.	.	Atlas-SNP
AHNAK	79026	hgsc.bcm.edu	hg19	11	62290643	62290643	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	AHNAK	NM_001620	exon5	c.A11246T	p.D3749V	TCAATGTCAGGCA	.	76.0	18.0	104.0	0.0	.	532	.	.	Atlas-SNP
MAP4K2	5871	hgsc.bcm.edu	hg19	11	64563810	64563810	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	MAP4K2	NM_004579	exon24	c.G1686T	p.R562R	TAGCCTCCGCTGC	.	101.0	25.0	105.0	0.0	.	83	.	.	Atlas-SNP
EHBP1L1	254102	hgsc.bcm.edu	hg19	11	65349553	65349553	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	EHBP1L1	NM_001099409	exon9	c.C1410T	p.T470T	CAGGACCAGGGAT	.	155.0	37.0	133.0	0.0	.	64	.	.	Atlas-SNP
SPTBN2	6712	hgsc.bcm.edu	hg19	11	66466555	66466555	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	SPTBN2	NM_006946	exon19	c.3777-2A>T	.	TGTGCCTGGAACG	.	96.0	28.0	107.0	0.0	.	188	.	.	Atlas-SNP
FGF19	9965	hgsc.bcm.edu	hg19	11	69518447	69518447	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	FGF19	NM_005117	exon1	c.C198A	p.G66G	CACGACGCCGTCG	.	29.0	14.0	45.0	0.0	.	11	.	.	Atlas-SNP
PAK1	5058	hgsc.bcm.edu	hg19	11	77070041	77070041	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PAK1	NM_001128620	exon6	c.A499T	p.T167S	CAGGAGTCTCAGA	.	49.0	10.0	58.0	0.0	.	89	.	.	Atlas-SNP
PAK1	5058	hgsc.bcm.edu	hg19	11	77070043	77070043	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PAK1	NM_001128620	exon6	c.A497T	p.E166V	GGAGTCTCAGACA	.	46.0	10.0	58.0	0.0	.	89	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92600067	92600067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	FAT3	NM_001008781	exon21	c.G11819A	p.R3940Q	TGGAGCGGCGCCG	.	62.0	22.0	72.0	0.0	.	1822	.	.	Atlas-SNP
MMP20	9313	hgsc.bcm.edu	hg19	11	102495988	102495988	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	MMP20	NM_004771	exon1	c.T63C	p.T21T	GGCTGCAGTGGAA	.	75.0	24.0	104.0	0.0	.	52	.	.	Atlas-SNP
LAYN	143903	hgsc.bcm.edu	hg19	11	111430883	111430883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	LAYN	NM_001258390	exon8	c.G849T	p.Q283H	TCACCAGGGAAAC	.	146.0	42.0	163.0	0.0	.	35	.	.	Atlas-SNP
ERC1	23085	hgsc.bcm.edu	hg19	12	1137264	1137264	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ERC1	NM_178039	exon2	c.C195T	p.A65A	TGCTGCCTATGCC	.	82.0	26.0	70.0	0.0	.	95	.	.	Atlas-SNP
DBX2	440097	hgsc.bcm.edu	hg19	12	45417596	45417596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	DBX2	NM_001004329	exon3	c.C581T	p.S194F	TCCTCAGAAAAGA	.	70.0	18.0	80.0	0.0	.	45	.	.	Atlas-SNP
TENC1	23371	hgsc.bcm.edu	hg19	12	53454679	53454679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	TENC1	NM_015319	exon20	c.G3019T	p.D1007Y	CACTCAGATGGCG	.	105.0	29.0	89.0	0.0	.	148	.	.	Atlas-SNP
SPRYD3	84926	hgsc.bcm.edu	hg19	12	53460128	53460128	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	SPRYD3	NM_032840	exon10	c.A1164T	p.I388I	CGGCTCTATCTCT	.	94.0	28.0	82.0	0.0	.	29	.	.	Atlas-SNP
RARG	5916	hgsc.bcm.edu	hg19	12	53608001	53608001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	RARG,colon,carcinoma,0,1	RARG	NM_000966	exon7	c.C655T	p.R219C	GCACGCGGTGGTC	.	83.0	17.0	93.0	0.0	.	53	.	.	Atlas-SNP
CALCOCO1	57658	hgsc.bcm.edu	hg19	12	54105826	54105826	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	CALCOCO1	NM_020898	exon15	c.A1978T	p.K660X	GCTCCTTACAGAT	.	160.0	45.0	170.0	0.0	.	50	.	.	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	hg19	12	57589063	57589063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	LRP1	NM_002332	exon52	c.C8318T	p.T2773M	GCAAGACGTGCGG	.	51.0	15.0	53.0	0.0	.	428	.	.	Atlas-SNP
NOS1	4842	hgsc.bcm.edu	hg19	12	117657990	117657990	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	NOS1	NM_001204218	exon28	c.T4162A	p.C1388S	CCCCACAGACGTA	.	42.0	16.0	50.0	0.0	.	240	.	.	Atlas-SNP
SACS	26278	hgsc.bcm.edu	hg19	13	23929324	23929324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	SACS	NM_014363	exon8	c.G1427A	p.S476N	TTTATGCTCCTGC	.	53.0	17.0	64.0	0.0	.	871	.	.	Atlas-SNP
PDS5B	23047	hgsc.bcm.edu	hg19	13	33333788	33333788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PDS5B	NM_015032	exon29	c.A3332G	p.Y1111C	AAAATTATCTGCC	.	103.0	28.0	102.0	0.0	.	141	.	.	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77672195	77672195	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	MYCBP2	NM_015057	exon56	c.A9094T	p.R3032X	CAGCTCTGGCACA	.	115.0	30.0	64.0	0.0	.	1029	.	.	Atlas-SNP
DAOA	267012	hgsc.bcm.edu	hg19	13	106119492	106119492	+	Splice_Site	SNP	T	T	C	rs148297571	bycluster;by1000genomes;alternate_allele	TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	DAOA	NM_172370	exon2	c.133+2T>C	.	TATTGGTATGTTA	.	78.0	10.0	62.0	0.0	.	26	.	T|0.994;A|0.006	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	hg19	14	45645056	45645056	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	FANCM	NM_020937	exon14	c.A3099G	p.K1033K	TGATAAATGCACC	.	151.0	48.0	156.0	0.0	.	225	.	.	Atlas-SNP
COQ6	51004	hgsc.bcm.edu	hg19	14	74417192	74417192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	COQ6	NM_182476	exon1	c.G157A	p.A53T	GCCTGTGCCTTGG	.	95.0	26.0	79.0	0.0	.	27	.	.	Atlas-SNP
PROX2	283571	hgsc.bcm.edu	hg19	14	75329266	75329266	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PROX2	NM_001243007	exon1	c.T1272A	p.A424A	CATGACAGCATGC	.	61.0	20.0	49.0	0.0	.	44	.	.	Atlas-SNP
RPS6KA5	9252	hgsc.bcm.edu	hg19	14	91340125	91340125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	RPS6KA5	NM_004755	exon16	c.G2011T	p.D671Y	TTGGATCTACTGT	.	59.0	15.0	38.0	0.0	.	135	.	.	Atlas-SNP
DICER1	23405	hgsc.bcm.edu	hg19	14	95590842	95590842	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	DICER1	NM_030621	exon9	c.A1067T	p.H356L	AGTGCATGTATTT	.	145.0	42.0	146.0	0.0	.	181	.	.	Atlas-SNP
TECPR2	9895	hgsc.bcm.edu	hg19	14	102898383	102898383	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	TECPR2	NM_001172631	exon8	c.C1335T	p.N445N	ATTCAACGCCATC	.	80.0	21.0	93.0	0.0	.	114	.	.	Atlas-SNP
NPAP1	23742	hgsc.bcm.edu	hg19	15	24921184	24921184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	C15orf2,caecum,carcinoma,0,2	.	NM_018958	exon1	c.G170A	p.R57H	CCCGTCGCAGGCC	.	134.0	39.0	136.0	0.0	.	.	.	.	Atlas-SNP
C15orf55	256646	hgsc.bcm.edu	hg19	15	34646775	34646775	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	C15orf55	NM_175741	exon5	c.A1120T	p.I374F	GTTGACATCATGG	.	179.0	58.0	146.0	0.0	.	110	.	.	Atlas-SNP
LTK	4058	hgsc.bcm.edu	hg19	15	41804112	41804112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	LTK	NM_001135685	exon5	c.A560T	p.E187V	TGCTCTTCAACGG	.	81.0	24.0	76.0	0.0	.	117	.	.	Atlas-SNP
DUOX1	53905	hgsc.bcm.edu	hg19	15	45426494	45426494	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	DUOX1	NM_017434	exon5	c.G294A	p.L98L	AGTGTTGGGGGTC	.	136.0	48.0	139.0	0.0	.	125	.	.	Atlas-SNP
SHF	90525	hgsc.bcm.edu	hg19	15	45464477	45464477	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	SHF	NM_138356	exon6	c.G833C	p.G278A	TCCCGGCCAGGTG	.	53.0	17.0	60.0	0.0	.	27	.	.	Atlas-SNP
TLN2	83660	hgsc.bcm.edu	hg19	15	63089561	63089561	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	TLN2	NM_015059	exon45	c.T6194A	p.L2065Q	TCAAGCTGGGGGC	.	124.0	39.0	108.0	0.0	.	253	.	.	Atlas-SNP
PIF1	80119	hgsc.bcm.edu	hg19	15	65113605	65113605	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PIF1	NM_025049	exon5	c.T932A	p.V311E	GCCTCCACCATTG	.	171.0	40.0	195.0	0.0	.	43	.	.	Atlas-SNP
CSPG4	1464	hgsc.bcm.edu	hg19	15	75968374	75968374	+	Silent	SNP	A	A	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	CSPG4	NM_001897	exon10	c.T6486G	p.T2162T	AGGCTCAGTGGCA	.	27.0	9.0	18.0	0.0	.	175	.	.	Atlas-SNP
ABHD2	11057	hgsc.bcm.edu	hg19	15	89659582	89659582	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ABHD2	NM_007011	exon7	c.C24T	p.P8P	GACTCCCGAACTC	.	109.0	25.0	93.0	0.0	.	55	.	.	Atlas-SNP
CASKIN1	57524	hgsc.bcm.edu	hg19	16	2235014	2235014	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	CASKIN1	NM_020764	exon13	c.A1262T	p.Q421L	GACTTCTGGGAAA	.	113.0	52.0	94.0	0.0	.	130	.	.	Atlas-SNP
NOMO3	408050	hgsc.bcm.edu	hg19	16	16356983	16356983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	NOMO3	NM_001004067	exon13	c.C1448T	p.T483I	CCCAGACATTTCC	.	159.0	65.0	137.0	0.0	.	23	.	.	Atlas-SNP
PRKCB	5579	hgsc.bcm.edu	hg19	16	24105573	24105573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PRKCB	NM_212535	exon7	c.T776C	p.L259S	GATCTTTGTCCTT	.	201.0	92.0	159.0	0.0	.	383	.	.	Atlas-SNP
ITGAM	3684	hgsc.bcm.edu	hg19	16	31336309	31336309	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ITGAM	NM_001145808	exon19	c.A2323T	p.N775Y	AATGACAACATCT	.	70.0	28.0	46.0	0.0	.	137	.	.	Atlas-SNP
NOD2	64127	hgsc.bcm.edu	hg19	16	50746089	50746089	+	Missense_Mutation	SNP	G	G	T	rs375713299	alternate_allele	TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	NOD2,caecum,carcinoma,0,1	NOD2	NM_022162	exon4	c.G2267T	p.R756L	TGGCTCGGAAGGC	.	98.0	20.0	57.0	0.0	.	118	.	.	Atlas-SNP
SALL1	6299	hgsc.bcm.edu	hg19	16	51175130	51175130	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	SALL1	NM_002968	exon2	c.A1003T	p.S335C	AGCCGCTGTTGGA	.	82.0	27.0	59.0	0.0	.	301	.	.	Atlas-SNP
BBS2	583	hgsc.bcm.edu	hg19	16	56545111	56545111	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	BBS2	NM_031885	exon3	c.T431A	p.L144Q	CCTTGCAGAGCAC	.	77.0	37.0	51.0	0.0	.	67	.	.	Atlas-SNP
KATNB1	10300	hgsc.bcm.edu	hg19	16	57785926	57785926	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	KATNB1	NM_005886	exon8	c.T591G	p.F197L	CGAGTTTCACCCC	.	105.0	46.0	69.0	0.0	.	35	.	.	Atlas-SNP
ZC3H18	124245	hgsc.bcm.edu	hg19	16	88643896	88643896	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ZC3H18	NM_144604	exon2	c.A365T	p.E122V	CCAGGGAGCTGGA	.	82.0	21.0	58.0	0.0	.	90	.	.	Atlas-SNP
SMYD4	114826	hgsc.bcm.edu	hg19	17	1703349	1703349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	SMYD4	NM_052928	exon5	c.G1339T	p.V447F	CAGAAACACAGAG	.	80.0	25.0	95.0	0.0	.	50	.	.	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7681450	7681450	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	DNAH2	NM_020877	exon33	c.A5303T	p.E1768V	ATTATGAGTACTT	.	80.0	18.0	72.0	0.0	.	498	.	.	Atlas-SNP
MYH8	4626	hgsc.bcm.edu	hg19	17	10314242	10314242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	MYH8	NM_002472	exon15	c.G1439T	p.C480F	TTGATGCACAGCT	.	112.0	31.0	96.0	0.0	.	346	.	.	Atlas-SNP
GPR179	440435	hgsc.bcm.edu	hg19	17	36485868	36485868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	GPR179	NM_001004334	exon11	c.C3584T	p.A1195V	TTACCTGCTCTCT	.	95.0	29.0	93.0	0.0	.	170	.	.	Atlas-SNP
MED24	9862	hgsc.bcm.edu	hg19	17	38183205	38183205	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	MED24	NM_014815	exon17	c.A1613T	p.K538M	AGGATCTTGCCCT	.	138.0	43.0	124.0	0.0	.	89	.	.	Atlas-SNP
TOP2A	7153	hgsc.bcm.edu	hg19	17	38557137	38557137	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	TOP2A	NM_001067	exon21	c.A2629T	p.R877W	AACGCCTGATGTT	.	96.0	16.0	109.0	0.0	.	124	.	.	Atlas-SNP
STAT3	6774	hgsc.bcm.edu	hg19	17	40474482	40474482	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	STAT3,NS,lymphoid_neoplasm,0,46	STAT3	NM_003150	exon21	c.A1919T	p.Y640F	TTTGTGTATGGTT	.	134.0	37.0	136.0	0.0	.	268	.	.	Atlas-SNP
COL1A1	1277	hgsc.bcm.edu	hg19	17	48276663	48276663	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	COL1A1	NM_000088	exon5	c.A395T	p.D132V	ATGCCATCTCGGC	.	178.0	34.0	174.0	0.0	.	158	.	.	Atlas-SNP
TEX2	55852	hgsc.bcm.edu	hg19	17	62290645	62290645	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	TEX2	NM_018469	exon2	c.A933T	p.E311D	ACTTTCTTCCCCT	.	75.0	14.0	73.0	0.0	.	89	.	.	Atlas-SNP
ABCA9	10350	hgsc.bcm.edu	hg19	17	66988376	66988376	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ABCA9	NM_080283	exon28	c.T3656G	p.I1219S	CGCAGAATGAAAA	.	217.0	53.0	190.0	0.0	.	192	.	.	Atlas-SNP
COG1	9382	hgsc.bcm.edu	hg19	17	71197661	71197661	+	Silent	SNP	C	C	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	COG1	NM_018714	exon7	c.C1695G	p.T565T	GGGGACCGTGCAG	.	81.0	25.0	80.0	0.0	.	46	.	.	Atlas-SNP
C17orf99	100141515	hgsc.bcm.edu	hg19	17	76160372	76160372	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	.	NM_001163075	exon4	c.A567G	p.T189T	CCAGACATCGGAC	.	166.0	48.0	176.0	0.0	.	.	.	.	Atlas-SNP
MYOM1	8736	hgsc.bcm.edu	hg19	18	3215130	3215130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	MYOM1,NS,carcinoma,0,1	MYOM1	NM_003803	exon2	c.G92A	p.R31Q	TTCTCCCGCTGGT	.	74.0	25.0	80.0	0.0	.	192	.	.	Atlas-SNP
PTPRM	5797	hgsc.bcm.edu	hg19	18	7926575	7926575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PTPRM	NM_001105244	exon5	c.C557T	p.P186L	GGACTCCTCACTT	.	64.0	16.0	74.0	0.0	.	185	.	.	Atlas-SNP
ANKRD30B	374860	hgsc.bcm.edu	hg19	18	14842894	14842894	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ANKRD30B	NM_001145029	exon32	c.2723-2A>G	.	CTTTTTAGAGTCT	.	482.0	85.0	454.0	0.0	.	237	.	.	Atlas-SNP
GATA6	2627	hgsc.bcm.edu	hg19	18	19751506	19751506	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	GATA6	NM_005257	exon2	c.C401G	p.A134G	GCGGCGCCAAGCT	.	1043.0	281.0	1248.0	0.0	.	35	.	.	Atlas-SNP
PIAS2	9063	hgsc.bcm.edu	hg19	18	44400939	44400939	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PIAS2	NM_173206	exon12	c.A1605G	p.P535P	GTGGAATGGTACT	.	115.0	31.0	146.0	0.0	.	85	.	.	Atlas-SNP
S1PR4	8698	hgsc.bcm.edu	hg19	19	3179175	3179175	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	S1PR4	NM_003775	exon1	c.C385T	p.L129L	ACCGCCCTGGCCG	.	157.0	29.0	125.0	0.0	.	31	.	.	Atlas-SNP
PTPRS	5802	hgsc.bcm.edu	hg19	19	5244417	5244417	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PTPRS	NM_002850	exon11	c.C1065T	p.G355G	TGGGTTGCCCGAG	.	131.0	54.0	113.0	0.0	.	169	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9068492	9068492	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	MUC16	NM_024690	exon3	c.T18954A	p.T6318T	TGAGACAGTAAAA	.	134.0	53.0	88.0	0.0	.	4315	.	.	Atlas-SNP
OR1M1	125963	hgsc.bcm.edu	hg19	19	9204033	9204033	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	OR1M1	NM_001004456	exon1	c.T113A	p.M38K	TGGTCATGGTCGT	.	94.0	15.0	73.0	0.0	.	52	.	.	Atlas-SNP
PODNL1	79883	hgsc.bcm.edu	hg19	19	14047181	14047181	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	PODNL1	NM_024825	exon3	c.A339G	p.E113E	CTCACCTTCGGAG	.	71.0	23.0	66.0	0.0	.	27	.	.	Atlas-SNP
JAK3	3718	hgsc.bcm.edu	hg19	19	17954263	17954263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	JAK3	NM_000215	exon4	c.C346A	p.H116N	AGCGGTGGCACTT	.	227.0	49.0	170.0	0.0	.	341	.	.	Atlas-SNP
KIRREL2	84063	hgsc.bcm.edu	hg19	19	36351548	36351548	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	KIRREL2	NM_199180	exon7	c.A907C	p.S303R	AACCGCAGTACTG	.	71.0	31.0	61.0	0.0	.	170	.	.	Atlas-SNP
SPTBN4	57731	hgsc.bcm.edu	hg19	19	41025770	41025770	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	SPTBN4	NM_020971	exon16	c.A3366T	p.L1122L	CAGCCTAGAAGAG	.	38.0	9.0	28.0	0.0	.	213	.	.	Atlas-SNP
HNRNPUL1	11100	hgsc.bcm.edu	hg19	19	41808816	41808816	+	Missense_Mutation	SNP	G	G	A	rs147281768		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	HNRNPUL1	NM_007040	exon12	c.G1934A	p.R645Q	AGAACCGAGGGGG	.	247.0	44.0	185.0	0.0	.	73	.	G|1.000;A|0.000	Atlas-SNP
IRGQ	126298	hgsc.bcm.edu	hg19	19	44096203	44096203	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	IRGQ	NM_001007561	exon3	c.T1847A	p.L616Q	GGTGCCAGCACAG	.	166.0	34.0	116.0	0.0	.	40	.	.	Atlas-SNP
TPRX1	284355	hgsc.bcm.edu	hg19	19	48305829	48305829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	TPRX1	NM_198479	exon2	c.G439A	p.G147S	ATGGGCCTGGGAT	.	198.0	36.0	146.0	0.0	.	46	.	.	Atlas-SNP
ZNF615	284370	hgsc.bcm.edu	hg19	19	52496688	52496688	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ZNF615	NM_001199324	exon7	c.A1674G	p.K558K	GAAGCCTTTTCCA	.	97.0	4.0	80.0	0.0	.	111	.	.	Atlas-SNP
ZNF808	388558	hgsc.bcm.edu	hg19	19	53050791	53050791	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ZNF808	NM_001039886	exon4	c.T90C	p.A30A	TGTGGCTATAGAA	.	118.0	22.0	83.0	0.0	.	81	.	.	Atlas-SNP
VN1R2	317701	hgsc.bcm.edu	hg19	19	53762581	53762581	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	VN1R2	NM_173856	exon1	c.T953A	p.L318H	GCATCCTTGCATT	.	133.0	51.0	161.0	0.0	.	71	.	.	Atlas-SNP
SIRPB1	10326	hgsc.bcm.edu	hg19	20	1551730	1551730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	SIRPB1	NM_006065	exon4	c.A805G	p.N269D	TGACGTTTGCCTG	.	195.0	80.0	146.0	0.0	.	83	.	.	Atlas-SNP
CEP250	11190	hgsc.bcm.edu	hg19	20	34092199	34092199	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	CEP250	NM_007186	exon30	c.T6002A	p.L2001Q	CAACCCTGCAAGC	.	89.0	39.0	77.0	0.0	.	141	.	.	Atlas-SNP
TTI1	9675	hgsc.bcm.edu	hg19	20	36642114	36642114	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	TTI1	NM_014657	exon3	c.A105T	p.T35T	TAGTCGTGTCTGC	.	117.0	57.0	85.0	0.0	.	104	.	.	Atlas-SNP
SYS1	90196	hgsc.bcm.edu	hg19	20	43995718	43995718	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	SYS1	NM_001197129	exon5	c.A434T	p.E145V	TCAAGGAGATACC	.	136.0	52.0	117.0	0.0	.	15	.	.	Atlas-SNP
SLC12A5	57468	hgsc.bcm.edu	hg19	20	44665420	44665420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	SLC12A5	NM_001134771	exon5	c.A536G	p.N179S	CAACGAATGGTGT	.	143.0	22.0	96.0	0.0	.	181	.	.	Atlas-SNP
SYCP2	10388	hgsc.bcm.edu	hg19	20	58441392	58441392	+	Nonsense_Mutation	SNP	C	C	A	rs377589640	alternate_allele	TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	SYCP2,NS,carcinoma,0,1	SYCP2	NM_014258	exon40	c.G4276T	p.E1426X	CTTTTTCAAAATT	.	464.0	96.0	310.0	1.0	.	204	.	.	Atlas-SNP
ZNF512B	57473	hgsc.bcm.edu	hg19	20	62595237	62595237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ZNF512B	NM_020713	exon9	c.A1510G	p.I504V	CATGGATGGCCCT	.	54.0	13.0	40.0	0.0	.	72	.	.	Atlas-SNP
TPTE	7179	hgsc.bcm.edu	hg19	21	10921957	10921957	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	TPTE	NM_199261	exon18	c.T1066C	p.S356P	TTTCAGAGGCAAT	.	577.0	63.0	570.0	0.0	.	513	.	.	Atlas-SNP
KRTAP13-4	284827	hgsc.bcm.edu	hg19	21	31802679	31802679	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	KRTAP13-4	NM_181600	exon1	c.T86A	p.L29Q	GCAGCCTGGTCTA	.	118.0	40.0	114.0	0.0	.	46	.	.	Atlas-SNP
TMPRSS2	7113	hgsc.bcm.edu	hg19	21	42845270	42845270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	TMPRSS2	NM_001135099	exon9	c.C992T	p.A331V	TGGGCGGCTGTCA	.	115.0	36.0	108.0	0.0	.	148	.	.	Atlas-SNP
COL6A2	1292	hgsc.bcm.edu	hg19	21	47535813	47535813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	COL6A2	NM_058175	exon6	c.G829A	p.G277R	GAGCCGGGAGAGC	.	79.0	20.0	68.0	0.0	.	351	.	.	Atlas-SNP
SPECC1L	23384	hgsc.bcm.edu	hg19	22	24807640	24807640	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	SPECC1L	NM_001145468	exon14	c.A3172T	p.I1058F	GCCCACATTCCAT	.	60.0	19.0	66.0	0.0	.	85	.	.	Atlas-SNP
ADRBK2	157	hgsc.bcm.edu	hg19	22	26083502	26083502	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ADRBK2	NM_005160	exon11	c.827-2A>C	.	GATTCCAGGGGGC	.	75.0	22.0	68.0	0.0	.	78	.	.	Atlas-SNP
RPGR	6103	hgsc.bcm.edu	hg19	X	38182690	38182690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	RPGR	NM_001034853	exon2	c.A116G	p.H39R	GAAAGATGTACAG	.	551.0	245.0	769.0	0.0	.	175	.	.	Atlas-SNP
KCND1	3750	hgsc.bcm.edu	hg19	X	48826085	48826085	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	KCND1	NM_004979	exon1	c.G594A	p.V198V	GACCGACACGGCG	.	107.0	41.0	127.0	0.0	.	63	.	.	Atlas-SNP
ARHGEF9	23229	hgsc.bcm.edu	hg19	X	62926291	62926291	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ARHGEF9	NM_015185	exon3	c.C228T	p.P76P	ATCGCTGGGCCCC	.	39.0	14.0	65.0	0.0	.	117	.	.	Atlas-SNP
AWAT2	158835	hgsc.bcm.edu	hg19	X	69269752	69269752	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	AWAT2	NM_001002254	exon1	c.A31T	p.T11S	GGGCAGTCTTGAG	.	358.0	130.0	405.0	0.0	.	36	.	.	Atlas-SNP
ZMAT1	84460	hgsc.bcm.edu	hg19	X	101139286	101139286	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ZMAT1	NM_001011657	exon7	c.A1113T	p.S371S	CACTGGTGAAATA	.	145.0	52.0	176.0	0.0	.	143	.	.	Atlas-SNP
COL4A5	1287	hgsc.bcm.edu	hg19	X	107867495	107867495	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	COL4A5	NM_000495	exon34	c.T2947A	p.Y983N	AAAGGTTATCAGG	.	110.0	34.0	156.0	0.0	.	262	.	.	Atlas-SNP
AIFM1	9131	hgsc.bcm.edu	hg19	X	129289157	129289157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	AIFM1	NM_145812	exon2	c.A211G	p.T71A	TGACTGTTGCTCC	.	268.0	13.0	317.0	0.0	.	75	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13177	13177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	.	ENST00000361567	exon1	c.G841A	p.G281S	TGCTTAGGCGCTA	.	50.0	47.0	10.0	0.0	.	.	.	.	Atlas-SNP
SYTL3	94120	hgsc.bcm.edu	hg19	6	159139125	159139125	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	SYTL3	NM_001242384	exon11	c.601delT	p.S201fs	.	.	89.0	19.0	62.0	0.0	.	49	.	.	Atlas-INDEL
BTAF1	9044	hgsc.bcm.edu	hg19	10	93699802	93699802	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	BTAF1	NM_003972	exon3	c.231delT	p.N77fs	.	.	202.0	57.0	162.0	0.0	.	148	.	.	Atlas-INDEL
FFAR4	338557	hgsc.bcm.edu	hg19	10	95338925	95338931	+	Frame_Shift_Del	DEL	CACCTCC	CACCTCC	-	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	CACCTCC	CACCTCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	.	NM_181745	exon3	c.705_711del	p.235_237del	.	.	79.0	16.0	76.0	0.0	.	.	.	.	Atlas-INDEL
KIAA2018	205717	hgsc.bcm.edu	hg19	3	113379342	113379342	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	KIAA2018	NM_001009899	exon7	c.1188delT	p.N396fs	.	.	61.0	19.0	55.0	0.0	.	180	.	.	Atlas-INDEL
CC2D2A	57545	hgsc.bcm.edu	hg19	4	15529075	15529075	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	CC2D2A	NM_001080522	exon13	c.1154delT	p.V385fs	.	.	58.0	11.0	50.0	0.0	.	158	.	.	Atlas-INDEL
ROBO1	6091	hgsc.bcm.edu	hg19	3	78649366	78649366	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	ROBO1	NM_002941	exon30	c.4839delA	p.G1613fs	.	.	228.0	56.0	188.0	0.0	.	833	.	.	Atlas-INDEL
KRTAP4-5	85289	hgsc.bcm.edu	hg19	17	39305778	39305779	+	In_Frame_Ins	INS	-	-	AGCAGCTGGGGCGGC	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	KRTAP4-5	NM_033188	exon1	c.242_243insGCCGCCCCAGCTGCT	p.C81delinsCRPSCC	.	.	61.0	37.0	45.0	0.0	.	34	.	.	Atlas-INDEL
CENPF	1063	hgsc.bcm.edu	hg19	1	214815369	214815370	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	CENPF	NM_016343	exon12	c.3687_3688del	p.1229_1230del	.	.	797.0	369.0	372.0	0.0	.	321	.	.	Atlas-INDEL
NME6	10201	hgsc.bcm.edu	hg19	3	48336594	48336595	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	NME6	NM_005793	exon5	c.389_390del	p.130_130del	.	.	107.0	35.0	114.0	0.0	.	14	.	.	Atlas-INDEL
FMO3	2328	hgsc.bcm.edu	hg19	1	171061808	171061809	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AACT-01A-11D-A40R-10	TCGA-DD-AACT-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf	52619546-0765-495f-b30e-c05fc98e8c92	.	FMO3	NM_001002294	exon2	c.9_10insA	p.K3fs	.	.	231.0	17.0	124.0	0.0	.	73	.	.	Atlas-INDEL
