Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
HSPG2	3339	hgsc.bcm.edu	hg19	1	22163367	22163367	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	HSPG2	NM_005529	exon75	c.G10283A	p.G3428D	TGGGTACCCCGGT	.	1480.0	559.0	1385.0	0.0	.	311	.	.	Atlas-SNP
SERBP1	26135	hgsc.bcm.edu	hg19	1	67885696	67885696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	SERBP1	NM_001018067	exon6	c.A992G	p.E331G	ACCTCTTCACTCT	.	220.0	131.0	377.0	0.0	.	31	.	.	Atlas-SNP
SERBP1	26135	hgsc.bcm.edu	hg19	1	67885701	67885701	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	SERBP1	NM_001018067	exon6	c.G987C	p.K329N	TTCACTCTTTGAT	.	226.0	137.0	383.0	0.0	.	31	.	.	Atlas-SNP
KPRP	448834	hgsc.bcm.edu	hg19	1	152733603	152733603	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	KPRP	NM_001025231	exon2	c.A1539T	p.L513L	AGACCTAGGCTGT	.	128.0	39.0	106.0	0.0	.	152	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181705462	181705462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	CACNA1E	NM_001205293	exon22	c.G3314T	p.R1105I	AGATCAGAGAGGA	.	165.0	58.0	178.0	0.0	.	778	.	.	Atlas-SNP
PM20D1	148811	hgsc.bcm.edu	hg19	1	205811830	205811830	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	PM20D1	NM_152491	exon7	c.A877T	p.T293S	ATACAGTCACCAC	.	44.0	13.0	40.0	0.0	.	56	.	.	Atlas-SNP
OR2T11	127077	hgsc.bcm.edu	hg19	1	248790047	248790047	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	OR2T11	NM_001001964	exon1	c.G383C	p.R128T	GGGTATCTCAGAG	.	182.0	69.0	169.0	0.0	.	64	.	.	Atlas-SNP
NTSR2	23620	hgsc.bcm.edu	hg19	2	11798694	11798694	+	Missense_Mutation	SNP	G	G	A	rs77419493	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	NTSR2	NM_012344	exon4	c.C1144T	p.P382S	TCATGGGGTGGTG	.	92.0	20.0	96.0	0.0	.	36	.	G|0.997;T|0.003	Atlas-SNP
NTSR2	23620	hgsc.bcm.edu	hg19	2	11798695	11798695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	NTSR2	NM_012344	exon4	c.C1143A	p.H381Q	CATGGGGTGGTGC	.	92.0	21.0	95.0	0.0	.	36	.	.	Atlas-SNP
FAM84A	151354	hgsc.bcm.edu	hg19	2	14774464	14774464	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	FAM84A	NM_145175	exon2	c.G361T	p.E121X	CTCTGCGAACCCG	.	96.0	4.0	83.0	0.0	.	23	.	.	Atlas-SNP
NRXN1	9378	hgsc.bcm.edu	hg19	2	50463932	50463932	+	Missense_Mutation	SNP	G	G	T	rs377333818		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	NRXN1_ENST00000536085,colon,carcinoma,+2,8	NRXN1	NM_001135659	exon19	c.C3661A	p.H1221N	CTATATGCAGTTC	.	151.0	75.0	147.0	0.0	.	1118	.	.	Atlas-SNP
UGP2	7360	hgsc.bcm.edu	hg19	2	64112930	64112930	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	UGP2	NM_006759	exon6	c.G783A	p.L261L	GGATCTGTATATT	.	121.0	20.0	152.0	0.0	.	38	.	.	Atlas-SNP
CTNNA2	1496	hgsc.bcm.edu	hg19	2	80816462	80816462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	CTNNA2	NM_001164883	exon15	c.G2041A	p.A681T	GAGAAGGCAAAAA	.	274.0	66.0	327.0	0.0	.	462	.	.	Atlas-SNP
FAHD2A	51011	hgsc.bcm.edu	hg19	2	96072725	96072725	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	FAHD2A	NM_016044	exon3	c.G282A	p.S94S	ACGGTCGGAGGTA	.	343.0	146.0	415.0	0.0	.	25	.	.	Atlas-SNP
ST6GAL2	84620	hgsc.bcm.edu	hg19	2	107459494	107459494	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	ST6GAL2	NM_032528	exon2	c.A940T	p.I314L	TACCTATTTCCTC	.	182.0	45.0	173.0	0.0	.	159	.	.	Atlas-SNP
ZC3H6	376940	hgsc.bcm.edu	hg19	2	113082111	113082111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	ZC3H6	NM_198581	exon10	c.T1723C	p.Y575H	TCATCATACCAGC	.	211.0	64.0	219.0	0.0	.	93	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196636524	196636524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	DNAH7,colon,carcinoma,0,1	DNAH7	NM_018897	exon61	c.G11293A	p.D3765N	CGATGTCGAAGTT	.	136.0	39.0	141.0	0.0	.	512	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196912120	196912120	+	Missense_Mutation	SNP	A	A	T	rs372676468	alternate_allele	TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	DNAH7	NM_018897	exon5	c.T354A	p.H118Q	TTCTTTATGTGGA	.	104.0	33.0	132.0	0.0	.	512	.	.	Atlas-SNP
GMPPA	29926	hgsc.bcm.edu	hg19	2	220370997	220370997	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	GMPPA	NM_205847	exon12	c.A1015T	p.S339C	CTGCATAGCATCG	.	46.0	11.0	66.0	0.0	.	50	.	.	Atlas-SNP
SLC4A3	6508	hgsc.bcm.edu	hg19	2	220500393	220500393	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	SLC4A3	NM_005070	exon14	c.1973-2A>T	.	TCCCCCAGAACTG	.	63.0	20.0	90.0	0.0	.	144	.	.	Atlas-SNP
ECEL1	9427	hgsc.bcm.edu	hg19	2	233346334	233346334	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	ECEL1	NM_004826	exon14	c.A1871T	p.Q624L	TCATACTGGCCCC	.	50.0	15.0	60.0	0.0	.	73	.	.	Atlas-SNP
FANCD2OS	115795	hgsc.bcm.edu	hg19	3	10145989	10145989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	C3orf24,NS,carcinoma,0,1	.	NM_001164839	exon2	c.G470T	p.R157L	ATAGAGCGCAGCA	.	80.0	4.0	73.0	0.0	.	.	.	.	Atlas-SNP
CAND2	23066	hgsc.bcm.edu	hg19	3	12857490	12857490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	CAND2	NM_001162499	exon9	c.T1424C	p.M475T	AGCATATGCCTGT	.	164.0	11.0	154.0	0.0	.	138	.	.	Atlas-SNP
ZCWPW2	152098	hgsc.bcm.edu	hg19	3	28476731	28476731	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	ZCWPW2	NM_001040432	exon3	c.T463A	p.F155I	GCAACATTCGTTG	.	429.0	162.0	378.0	0.0	.	49	.	.	Atlas-SNP
EPM2AIP1	9852	hgsc.bcm.edu	hg19	3	37033938	37033938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	EPM2AIP1	NM_014805	exon1	c.A631G	p.I211V	TGATTATGGTCAG	.	146.0	59.0	96.0	0.0	.	47	.	.	Atlas-SNP
ACAD9	28976	hgsc.bcm.edu	hg19	3	128621398	128621398	+	Silent	SNP	G	G	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	ACAD9	NM_014049	exon9	c.G885C	p.V295V	GCAGGTGGCCATG	.	122.0	34.0	104.0	0.0	.	51	.	.	Atlas-SNP
CHRD	8646	hgsc.bcm.edu	hg19	3	184101425	184101425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	CHRD	NM_003741	exon12	c.C1435T	p.H479Y	GGAGGACACACGG	.	95.0	38.0	112.0	0.0	.	149	.	.	Atlas-SNP
HTT	3064	hgsc.bcm.edu	hg19	4	3131687	3131687	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	HTT	NM_002111	exon13	c.C1780T	p.Q594X	GGCCTGCAGATTG	.	80.0	41.0	103.0	0.0	.	221	.	.	Atlas-SNP
NKX3-2	579	hgsc.bcm.edu	hg19	4	13544068	13544068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	NKX3-2	NM_001189	exon2	c.G551T	p.G184V	CCGCCCCCGCCGC	.	498.0	313.0	812.0	2.0	.	15	.	.	Atlas-SNP
FAM172A	83989	hgsc.bcm.edu	hg19	5	93294536	93294536	+	Silent	SNP	T	T	A	rs375944243	alternate_allele	TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	FAM172A	NM_032042	exon6	c.A513T	p.I171I	TTCATTTATAATA	.	251.0	92.0	202.0	0.0	.	38	.	.	Atlas-SNP
PPIP5K2	23262	hgsc.bcm.edu	hg19	5	102515808	102515808	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	PPIP5K2	NM_015216	exon23	c.G2841C	p.L947F	GATATTGTTTAAA	.	193.0	8.0	164.0	0.0	.	98	.	.	Atlas-SNP
PCDHB13	56123	hgsc.bcm.edu	hg19	5	140594106	140594106	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	PCDHB13	NM_018933	exon1	c.A411G	p.K137K	GGACAAACAAATG	.	698.0	209.0	649.0	0.0	.	142	.	.	Atlas-SNP
PCDHGA1	56114	hgsc.bcm.edu	hg19	5	140712001	140712001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	PCDHGA1	NM_018912	exon1	c.C1750A	p.P584T	GCAGAGCCCGGCT	.	108.0	35.0	89.0	0.0	.	397	.	.	Atlas-SNP
PCDH12	51294	hgsc.bcm.edu	hg19	5	141335502	141335502	+	Missense_Mutation	SNP	G	G	A	rs370147049		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	PCDH12	NM_016580	exon1	c.C1915T	p.R639C	CACTGCGGATGCT	.	67.0	25.0	72.0	0.0	.	133	.	.	Atlas-SNP
PPARGC1B	133522	hgsc.bcm.edu	hg19	5	149216515	149216515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	PPARGC1B	NM_133263	exon8	c.G2497A	p.D833N	TGCTCTGACCACT	.	89.0	14.0	73.0	0.0	.	74	.	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	hg19	5	169230174	169230174	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	DOCK2	NM_004946	exon26	c.C2667T	p.L889L	ATTGCTCAACAGC	.	204.0	73.0	148.0	0.0	.	389	.	.	Atlas-SNP
HK3	3101	hgsc.bcm.edu	hg19	5	176314451	176314451	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	HK3	NM_002115	exon12	c.1600+1G>A	.	TCCTTACCGCTGC	.	75.0	30.0	75.0	0.0	.	210	.	.	Atlas-SNP
IRF4	3662	hgsc.bcm.edu	hg19	6	405053	405053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	IRF4	NM_002460	exon8	c.C1135A	p.P379T	TCCCTGCCAAGAT	.	60.0	15.0	48.0	0.0	.	65	.	.	Atlas-SNP
TDP2	51567	hgsc.bcm.edu	hg19	6	24666984	24666984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	TDP2	NM_016614	exon1	c.C107T	p.A36V	CAGCTTGCGACCG	.	104.0	45.0	119.0	0.0	.	29	.	.	Atlas-SNP
TINAG	27283	hgsc.bcm.edu	hg19	6	54214615	54214615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	TINAG	NM_014464	exon7	c.C1001T	p.A334V	GGCATGCCACGAA	.	173.0	73.0	160.0	0.0	.	102	.	.	Atlas-SNP
COL19A1	1310	hgsc.bcm.edu	hg19	6	70733546	70733546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	COL19A1	NM_001858	exon12	c.G1054T	p.A352S	GATCCAGCTCTGG	.	104.0	28.0	122.0	0.0	.	232	.	.	Atlas-SNP
KLHL32	114792	hgsc.bcm.edu	hg19	6	97533088	97533088	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	KLHL32	NM_052904	exon6	c.C498G	p.F166L	CGATTTCTTAGTG	.	79.0	7.0	103.0	0.0	.	85	.	.	Atlas-SNP
GPRC6A	222545	hgsc.bcm.edu	hg19	6	117150058	117150058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	GPRC6A	NM_148963	exon1	c.G119A	p.G40D	AACAAACCTCCAA	.	138.0	32.0	180.0	0.0	.	152	.	.	Atlas-SNP
RP9	6100	hgsc.bcm.edu	hg19	7	33134956	33134956	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	RP9	NM_203288	exon6	c.A556T	p.K186X	TTTTCTTGTGTTT	.	430.0	147.0	378.0	0.0	.	19	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48315128	48315128	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	ABCA13	NM_152701	exon17	c.C5865T	p.I1955I	GCAAATCATAGAA	.	223.0	32.0	154.0	0.0	.	1192	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82582848	82582848	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	PCLO	NM_014510	exon5	c.C7421A	p.P2474H	GTAACAGGTAATC	.	123.0	45.0	97.0	0.0	.	1506	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82764321	82764321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	Q9Y6V0-3,colon,carcinoma,0,3	PCLO	NM_014510	exon3	c.G2545A	p.V849I	TTTGTACGGGGTC	.	192.0	72.0	184.0	0.0	.	1506	.	.	Atlas-SNP
FZD3	7976	hgsc.bcm.edu	hg19	8	28385158	28385158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.,1	FZD3	NM_017412	exon5	c.A881G	p.Y294C	TACTCTATTTTTT	.	78.0	51.0	104.0	0.0	.	65	.	.	Atlas-SNP
ASH2L	9070	hgsc.bcm.edu	hg19	8	37978484	37978484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	ASH2L	NM_004674	exon10	c.C982T	p.H328Y	CCCCCTCATGGCT	.	183.0	38.0	103.0	0.0	.	62	.	.	Atlas-SNP
ADAM9	8754	hgsc.bcm.edu	hg19	8	38913107	38913107	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	ADAM9	NM_003816	exon14	c.A1407T	p.G469G	TCCAGGAGGTACT	.	183.0	98.0	113.0	0.0	.	66	.	.	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77766536	77766536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	ZFHX4	NM_024721	exon10	c.G7379T	p.G2460V	TTATCGGAAGACC	.	110.0	7.0	105.0	0.0	.	878	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113812467	113812467	+	Missense_Mutation	SNP	G	G	T	rs201411480	bycluster;by1000genomes;alternate_allele	TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	CSMD3	NM_198123	exon13	c.C1896A	p.S632R	ACTCATGCTCACT	.	121.0	48.0	89.0	0.0	.	2325	.	G|1.000;A|0.000	Atlas-SNP
PTPN3	5774	hgsc.bcm.edu	hg19	9	112190926	112190926	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	PTPN3	NM_001145368	exon11	c.T803G	p.F268C	ATGAAGAACTTTT	.	44.0	32.0	79.0	0.0	.	106	.	.	Atlas-SNP
OR1J2	26740	hgsc.bcm.edu	hg19	9	125273731	125273731	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	OR1J2	NM_054107	exon1	c.A651T	p.S217S	GGTATCATATGGC	.	99.0	69.0	138.0	0.0	.	64	.	.	Atlas-SNP
ANK3	288	hgsc.bcm.edu	hg19	10	61833947	61833947	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	ANK3,NS,carcinoma,-1,1	ANK3	NM_020987	exon37	c.A6692T	p.N2231I	ACCCGATTGTGGT	.	96.0	19.0	107.0	0.0	.	703	.	.	Atlas-SNP
JMJD1C	221037	hgsc.bcm.edu	hg19	10	64968996	64968996	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	JMJD1C	NM_032776	exon10	c.2695-1G>T	.	AGAATTCTATTAA	.	102.0	49.0	108.0	0.0	.	347	.	.	Atlas-SNP
LIPF	8513	hgsc.bcm.edu	hg19	10	90431671	90431671	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	LIPF	NM_001198829	exon7	c.T648C	p.Y216Y	GAAGTATACAAAA	.	122.0	65.0	136.0	0.0	.	62	.	.	Atlas-SNP
ENTPD7	57089	hgsc.bcm.edu	hg19	10	101455831	101455831	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	ENTPD7	NM_020354	exon9	c.G962C	p.R321P	TTGCCCGGCAGCG	.	124.0	61.0	166.0	0.0	.	44	.	.	Atlas-SNP
CYP17A1	1586	hgsc.bcm.edu	hg19	10	104597106	104597106	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	CYP17A1	NM_000102	exon1	c.G13C	p.V5L	GAGCCACGAGCTC	.	49.0	14.0	56.0	0.0	.	48	.	.	Atlas-SNP
CHST15	51363	hgsc.bcm.edu	hg19	10	125798100	125798100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	CHST15	NM_014863	exon5	c.C1121T	p.T374M	TCCTGCGTCAGAA	.	109.0	33.0	187.0	0.0	.	134	.	.	Atlas-SNP
KNDC1	85442	hgsc.bcm.edu	hg19	10	135012081	135012081	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	KNDC1	NM_152643	exon14	c.2070-1G>A	.	CCCGTAGGGACCA	.	187.0	107.0	231.0	0.0	.	155	.	.	Atlas-SNP
KNDC1	85442	hgsc.bcm.edu	hg19	10	135012082	135012082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	KNDC1	NM_152643	exon14	c.G2070T	p.R690S	CCGTAGGGACCAG	.	186.0	102.0	231.0	0.0	.	155	.	.	Atlas-SNP
RBMXL2	27288	hgsc.bcm.edu	hg19	11	7110726	7110726	+	Silent	SNP	C	C	T	rs369241566		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	RBMXL2	NM_014469	exon1	c.C375T	p.G125G	CCGGGGCGGGCCC	.	22.0	14.0	4.0	0.0	.	47	.	.	Atlas-SNP
PPFIBP2	8495	hgsc.bcm.edu	hg19	11	7618805	7618805	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	PPFIBP2	NM_003621	exon5	c.A387G	p.T129T	CCTCACAGACCAA	.	87.0	37.0	92.0	0.0	.	87	.	.	Atlas-SNP
DCDC5	100506627	hgsc.bcm.edu	hg19	11	30938526	30938526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	DCDC5	NM_020869	exon7	c.C664T	p.P222S	ACCTGGGAAGTGT	.	147.0	14.0	131.0	0.0	.	137	.	.	Atlas-SNP
PATL1	219988	hgsc.bcm.edu	hg19	11	59423093	59423093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	PATL1	NM_152716	exon8	c.G934A	p.A312T	CTGGTGCTGGGGG	.	81.0	30.0	88.0	0.0	.	92	.	.	Atlas-SNP
SLC22A10	387775	hgsc.bcm.edu	hg19	11	63071682	63071682	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	SLC22A10	NM_001039752	exon8	c.T1388C	p.V463A	CCACTGTTCTCAG	.	64.0	18.0	45.0	0.0	.	79	.	.	Atlas-SNP
CATSPER1	117144	hgsc.bcm.edu	hg19	11	65784577	65784577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	CATSPER1	NM_053054	exon11	c.G2270A	p.R757H	TGGGAGCGGAACT	.	56.0	20.0	44.0	0.0	.	101	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92616054	92616054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	FAT3	NM_001008781	exon23	c.G12432T	p.Q4144H	TATCCAGGCTGGC	.	95.0	25.0	110.0	0.0	.	1822	.	.	Atlas-SNP
HEPHL1	341208	hgsc.bcm.edu	hg19	11	93796813	93796813	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	HEPHL1,right_upper_lobe,carcinoma,0,1	HEPHL1	NM_001098672	exon3	c.G555A	p.V185V	CTGGGTGTACCAT	.	170.0	10.0	154.0	0.0	.	144	.	.	Atlas-SNP
MMP20	9313	hgsc.bcm.edu	hg19	11	102487623	102487623	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	MMP20	NM_004771	exon2	c.T294A	p.P98P	ACAGCGAGGCTTC	.	198.0	78.0	170.0	0.0	.	52	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103091404	103091404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	DYNC2H1	NM_001377	exon57	c.T8999C	p.L3000P	AATCACTTTCAGA	.	143.0	6.0	118.0	0.0	.	246	.	.	Atlas-SNP
MSANTD4	84437	hgsc.bcm.edu	hg19	11	105881275	105881275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	.	NM_032424	exon2	c.G370A	p.D124N	GCCAGTCAAAATT	.	147.0	10.0	104.0	0.0	.	.	.	.	Atlas-SNP
TMEM45B	120224	hgsc.bcm.edu	hg19	11	129722516	129722516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	TMEM45B	NM_138788	exon2	c.A139G	p.I47V	CTCGAGATCGTCG	.	157.0	63.0	170.0	0.0	.	25	.	.	Atlas-SNP
C1RL	51279	hgsc.bcm.edu	hg19	12	7261740	7261740	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	C1RL	NM_016546	exon1	c.A37T	p.R13X	GGCTTCTCCAGAG	.	73.0	25.0	88.0	0.0	.	39	.	.	Atlas-SNP
ACSM4	341392	hgsc.bcm.edu	hg19	12	7479610	7479610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	ACSM4	NM_001080454	exon12	c.G1575T	p.K525N	CTTTAAGTCCTAC	.	87.0	24.0	90.0	0.0	.	98	.	.	Atlas-SNP
WIF1	11197	hgsc.bcm.edu	hg19	12	65471574	65471574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	WIF1	NM_007191	exon3	c.C349A	p.P117T	CGGTTGGATCTGC	.	130.0	47.0	115.0	0.0	.	96	.	.	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	70986218	70986218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	PTPRB	NM_001109754	exon7	c.C1624A	p.L542M	GAGACAGGGTGAT	.	140.0	49.0	165.0	0.0	.	676	.	.	Atlas-SNP
SLC41A2	84102	hgsc.bcm.edu	hg19	12	105289099	105289099	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	SLC41A2	NM_032148	exon3	c.C688G	p.P230A	CAATGGGTGAATC	.	85.0	5.0	89.0	0.0	.	66	.	.	Atlas-SNP
PIWIL1	9271	hgsc.bcm.edu	hg19	12	130847644	130847644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	PIWIL1	NM_004764	exon18	c.T2150C	p.V717A	ACGAAGTGCCACA	.	151.0	7.0	142.0	0.0	.	157	.	.	Atlas-SNP
SACS	26278	hgsc.bcm.edu	hg19	13	23909599	23909599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	SACS	NM_014363	exon10	c.A8416G	p.M2806V	TATCCATAGTATA	.	44.0	24.0	44.0	0.0	.	871	.	.	Atlas-SNP
OR4K1	79544	hgsc.bcm.edu	hg19	14	20404228	20404228	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	OR4K1	NM_001004063	exon1	c.A403T	p.I135F	AGTACAATTATGA	.	102.0	42.0	131.0	0.0	.	108	.	.	Atlas-SNP
MAPK1IP1L	93487	hgsc.bcm.edu	hg19	14	55529487	55529487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	MAPK1IP1L	NM_144578	exon3	c.C170A	p.A57E	CAAGTGCAACACC	.	108.0	5.0	136.0	0.0	.	14	.	.	Atlas-SNP
DACT1	51339	hgsc.bcm.edu	hg19	14	59112146	59112146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	DACT1	NM_016651	exon4	c.T805C	p.Y269H	TATCGCTATCCCA	.	104.0	17.0	130.0	0.0	.	119	.	.	Atlas-SNP
BTBD7	55727	hgsc.bcm.edu	hg19	14	93712481	93712481	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	BTBD7	NM_001002860	exon10	c.T2273G	p.L758W	GGGGGCAAGGGTG	.	135.0	10.0	134.0	0.0	.	112	.	.	Atlas-SNP
ATP10A	57194	hgsc.bcm.edu	hg19	15	25959142	25959142	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	ATP10A	NM_024490	exon10	c.G2023C	p.D675H	AGTTGTCCGCCTG	.	50.0	16.0	51.0	0.0	.	270	.	.	Atlas-SNP
CTDSPL2	51496	hgsc.bcm.edu	hg19	15	44783063	44783063	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	CTDSPL2	NM_016396	exon5	c.A557T	p.E186V	TGGATGAGATCAC	.	429.0	158.0	387.0	1.0	.	31	.	.	Atlas-SNP
CYP11A1	1583	hgsc.bcm.edu	hg19	15	74637456	74637456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	CYP11A1,bladder,carcinoma,-1,2	CYP11A1	NM_000781	exon3	c.G554A	p.R185H	TTGATGCGCCTGT	.	126.0	27.0	116.0	0.0	.	54	.	.	Atlas-SNP
IQGAP1	8826	hgsc.bcm.edu	hg19	15	90977012	90977012	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	IQGAP1,NS,carcinoma,0,1	IQGAP1	NM_003870	exon5	c.G452C	p.C151S	TCTACTGTATCCA	.	150.0	48.0	114.0	0.0	.	140	.	.	Atlas-SNP
MCTP2	55784	hgsc.bcm.edu	hg19	15	95001427	95001427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	MCTP2	NM_018349	exon19	c.T2312C	p.V771A	CAACTGTTCAAAA	.	170.0	41.0	144.0	0.0	.	122	.	.	Atlas-SNP
PPL	5493	hgsc.bcm.edu	hg19	16	4937194	4937194	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	PPL	NM_002705	exon21	c.A2549T	p.Y850F	ATGGCATAAACTT	.	59.0	32.0	79.0	0.0	.	168	.	.	Atlas-SNP
ACSM2A	123876	hgsc.bcm.edu	hg19	16	20497911	20497911	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	ACSM2A	NM_001010845	exon15	c.A1645C	p.N549H	GTCTTGAACCTGC	.	110.0	71.0	183.0	0.0	.	120	.	.	Atlas-SNP
ZNF423	23090	hgsc.bcm.edu	hg19	16	49660081	49660081	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	ZNF423	NM_015069	exon5	c.G3577T	p.E1193X	TCTTACCAATCAT	.	62.0	43.0	124.0	0.0	.	463	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577545	7577545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	TP53_ENST00000545858,rectum,carcinoma,0,6	TP53	NM_000546	exon7	c.A736G	p.M246V	GGTTCATGCCGCC	.	68.0	39.0	123.0	0.0	.	33396	.	.	Atlas-SNP
GJD3	125111	hgsc.bcm.edu	hg19	17	38519621	38519621	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	GJD3	NM_152219	exon1	c.C447T	p.T149T	CAGGAAGGTCAGC	.	32.0	12.0	20.0	0.0	.	2	.	.	Atlas-SNP
SMCHD1	23347	hgsc.bcm.edu	hg19	18	2762109	2762109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	SMCHD1	NM_015295	exon36	c.G4441A	p.V1481I	GTTATAGTTGAAG	.	139.0	59.0	157.0	0.0	.	88	.	.	Atlas-SNP
RFX2	5990	hgsc.bcm.edu	hg19	19	6013025	6013025	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	RFX2	NM_000635	exon8	c.C871A	p.R291R	GCTGCCGCATGGC	.	28.0	21.0	39.0	0.0	.	60	.	.	Atlas-SNP
CLEC4G	339390	hgsc.bcm.edu	hg19	19	7795018	7795018	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	CLEC4G	NM_198492	exon7	c.T514A	p.F172I	CCTCGAAGGACAG	.	89.0	5.0	134.0	0.0	.	18	.	.	Atlas-SNP
ZNF844	284391	hgsc.bcm.edu	hg19	19	12186502	12186502	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	ZNF844	NM_001136501	exon4	c.A567T	p.I189I	CATGATAATGCAC	.	104.0	11.0	182.0	0.0	.	69	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	38979817	38979817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	RYR1	NM_001042723	exon35	c.G5548T	p.V1850L	CTGTAGGTGATGG	.	38.0	23.0	60.0	0.0	.	708	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	38995537	38995537	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	RYR1	NM_001042723	exon51	c.T8217A	p.P2739P	CCGGCCTGTGGAG	.	81.0	57.0	104.0	0.0	.	708	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	39009927	39009927	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	RYR1	NM_001042723	exon67	c.G10092A	p.R3364R	CGGGCGGCTGCGC	.	103.0	75.0	144.0	0.0	.	708	.	.	Atlas-SNP
MKKS	8195	hgsc.bcm.edu	hg19	20	10393861	10393861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	MKKS	NM_170784	exon3	c.A302G	p.N101S	ATCAGGTTGCAGC	.	125.0	50.0	114.0	0.0	.	35	.	.	Atlas-SNP
MYH7B	57644	hgsc.bcm.edu	hg19	20	33578100	33578100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	MYH7B	NM_020884	exon22	c.C2090T	p.S697F	CGGTGTCCCAGCT	.	136.0	26.0	136.0	0.0	.	145	.	.	Atlas-SNP
SALL4	57167	hgsc.bcm.edu	hg19	20	50406736	50406736	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	SALL4	NM_020436	exon2	c.C2286G	p.D762E	GGATGAGTCGTTG	.	140.0	38.0	111.0	0.0	.	168	.	.	Atlas-SNP
SLC5A1	6523	hgsc.bcm.edu	hg19	22	32464553	32464553	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	SLC5A1	NM_000343	exon5	c.T443A	p.L148Q	CCCTTCTGTCCCT	.	87.0	32.0	89.0	0.0	.	80	.	.	Atlas-SNP
CXorf36	79742	hgsc.bcm.edu	hg19	X	45051186	45051186	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	CXorf36	NM_176819	exon2	c.A308T	p.D103V	GAATCATCTGAGT	.	62.0	51.0	47.0	0.0	.	53	.	.	Atlas-SNP
KIAA2022	340533	hgsc.bcm.edu	hg19	X	73962219	73962219	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	KIAA2022	NM_001008537	exon3	c.G2173T	p.E725X	TAGCTTCACTTTT	.	65.0	6.0	51.0	0.0	.	262	.	.	Atlas-SNP
MAGEE2	139599	hgsc.bcm.edu	hg19	X	75004522	75004522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	MAGEE2	NM_138703	exon1	c.C365T	p.S122L	TGATCTGAGTACT	.	100.0	10.0	60.0	0.0	.	94	.	.	Atlas-SNP
KIAA1210	57481	hgsc.bcm.edu	hg19	X	118222963	118222963	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	KIAA1210	NM_020721	exon11	c.A2230T	p.S744C	AAACACTTGCTGT	.	93.0	12.0	96.0	0.0	.	171	.	.	Atlas-SNP
SLITRK2	84631	hgsc.bcm.edu	hg19	X	144904522	144904522	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	SLITRK2	NM_001144005	exon5	c.A579G	p.L193L	TAGGCTAAAAGTA	.	100.0	24.0	104.0	0.0	.	221	.	.	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	hg19	14	45650891	45650891	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	FANCM	NM_020937	exon16	c.4368delC	p.R1456fs	.	.	151.0	31.0	152.0	0.0	.	225	.	.	Atlas-INDEL
AHNAK	79026	hgsc.bcm.edu	hg19	11	62288775	62288782	+	Frame_Shift_Del	DEL	TTGGACCC	TTGGACCC	-	novel		TCGA-DD-AACU-01A-11D-A40R-10	TCGA-DD-AACU-10A-01D-A40U-10	TTGGACCC	TTGGACCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d326320-5639-47af-8d15-1638282ab9d8	7534c02c-55eb-4c65-97dd-31520dc6d63a	.	AHNAK	NM_001620	exon5	c.13108_13115del	p.4370_4372del	.	.	150.0	13.0	131.0	0.0	.	532	.	.	Atlas-INDEL
