Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TAS1R1	80835	hgsc.bcm.edu	hg19	1	6631122	6631122	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	TAS1R1	NM_177540	exon2	c.G345A	p.T115T	TGCCACGCTGAGA	.	56.0	41.0	111.0	0.0	.	76	.	.	Atlas-SNP
NFYC	4802	hgsc.bcm.edu	hg19	1	41215315	41215315	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	NFYC	NM_001142587	exon4	c.G248C	p.R83P	CTCTTCGAGCCTG	.	77.0	52.0	85.0	0.0	.	39	.	.	Atlas-SNP
ZNF648	127665	hgsc.bcm.edu	hg19	1	182025619	182025619	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	ZNF648	NM_001009992	exon2	c.C1527T	p.C509C	CCTGCCGCACTCG	.	214.0	127.0	118.0	0.0	.	111	.	.	Atlas-SNP
UCHL5	51377	hgsc.bcm.edu	hg19	1	192992059	192992059	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	UCHL5	NM_015984	exon9	c.C843A	p.Y281X	TACCTTGTATCTT	.	141.0	8.0	84.0	0.0	.	41	.	.	Atlas-SNP
OR2L5	81466	hgsc.bcm.edu	hg19	1	248185504	248185504	+	Silent	SNP	G	G	C	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	.	NM_001258284	exon1	c.G255C	p.L85L	TTTTCTGTATGGA	.	170.0	106.0	63.0	0.0	.	.	.	.	Atlas-SNP
PTCD3	55037	hgsc.bcm.edu	hg19	2	86362000	86362000	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	PTCD3	NM_017952	exon21	c.A1668C	p.K556N	TATCAAATCTGCG	.	267.0	108.0	212.0	0.0	.	51	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179647562	179647562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	TTN	NM_001267550	exon18	c.T3071C	p.V1024A	GTGCTGACGGTTC	.	150.0	58.0	105.0	0.0	.	18412	.	.	Atlas-SNP
TRIP12	9320	hgsc.bcm.edu	hg19	2	230655847	230655847	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	TRIP12	NM_004238	exon29	c.A4311G	p.L1437L	GTGCCATAACTCA	.	132.0	57.0	97.0	0.0	.	207	.	.	Atlas-SNP
OSBPL10	114884	hgsc.bcm.edu	hg19	3	32022658	32022658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	OSBPL10	NM_017784	exon1	c.T14C	p.V5A	CCCTGGACTGCCC	.	44.0	13.0	30.0	0.0	.	160	.	.	Atlas-SNP
COL7A1	1294	hgsc.bcm.edu	hg19	3	48630101	48630101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	COL7A1	NM_000094	exon7	c.G878T	p.R293L	CGCAGCCGCACAC	.	42.0	24.0	45.0	0.0	.	320	.	.	Atlas-SNP
COL6A6	131873	hgsc.bcm.edu	hg19	3	130284086	130284086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	COL6A6	NM_001102608	exon3	c.G910T	p.G304W	CGAACTGGGAAGG	.	187.0	69.0	152.0	0.0	.	497	.	.	Atlas-SNP
FNDC3B	64778	hgsc.bcm.edu	hg19	3	172052790	172052790	+	Silent	SNP	G	G	T	rs139505585	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	FNDC3B	NM_001135095	exon15	c.G1698T	p.T566T	TTGTACGACGAGT	.	238.0	66.0	136.0	0.0	.	118	.	G|0.998;A|0.002	Atlas-SNP
ZNF639	51193	hgsc.bcm.edu	hg19	3	179047483	179047483	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	ZNF639	NM_016331	exon5	c.A136T	p.R46X	TCTATGAGACAGC	.	537.0	148.0	305.0	0.0	.	45	.	.	Atlas-SNP
ADIPOQ	9370	hgsc.bcm.edu	hg19	3	186570987	186570987	+	Missense_Mutation	SNP	C	C	T	rs372597136		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	ADIPOQ	NM_001177800	exon3	c.C140T	p.P47L	GGCATCCGGGCCA	.	598.0	176.0	320.0	0.0	.	35	.	.	Atlas-SNP
FRYL	285527	hgsc.bcm.edu	hg19	4	48581248	48581248	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	FRYL	NM_015030	exon23	c.T2270A	p.L757H	CAATAGAGCAAAG	.	101.0	48.0	99.0	0.0	.	242	.	.	Atlas-SNP
PIK3R1	5295	hgsc.bcm.edu	hg19	5	67590433	67590433	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	PIK3R1	NM_181523	exon12	c.C1495T	p.Q499X	CAGTGCCAGACCC	.	143.0	57.0	126.0	0.0	.	869	.	.	Atlas-SNP
RAPGEF6	51735	hgsc.bcm.edu	hg19	5	130778197	130778197	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	RAPGEF6	NM_001164387	exon25	c.A3494C	p.K1165T	GATGATTTGGCTG	.	117.0	47.0	97.0	0.0	.	361	.	.	Atlas-SNP
PHACTR2	9749	hgsc.bcm.edu	hg19	6	144095324	144095324	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	PHACTR2	NM_001100164	exon8	c.C1561T	p.R521X	GAAATCCGACAAC	.	103.0	84.0	149.0	0.0	.	99	.	.	Atlas-SNP
LPA	4018	hgsc.bcm.edu	hg19	6	160966486	160966486	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	LPA,NS,carcinoma,0,2	LPA	NM_005577	exon34	c.A5384G	p.D1795G	GGGATATCACAGT	.	48.0	39.0	47.0	0.0	.	237	.	.	Atlas-SNP
HOXA11	3207	hgsc.bcm.edu	hg19	7	27224475	27224475	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	HOXA11	NM_005523	exon1	c.C289G	p.P97A	CGCTGGGCGCCTG	.	56.0	8.0	41.0	0.0	.	29	.	.	Atlas-SNP
LAMB4	22798	hgsc.bcm.edu	hg19	7	107706863	107706863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	LAMB4	NM_007356	exon20	c.G2629T	p.G877W	ATGACCCTGTCTC	.	200.0	88.0	136.0	0.0	.	253	.	.	Atlas-SNP
PDLIM2	64236	hgsc.bcm.edu	hg19	8	22451394	22451394	+	Missense_Mutation	SNP	G	G	T	rs200868327	bycluster;alternate_allele	TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	PDLIM2_ENST00000308354,NS,carcinoma,0,1	PDLIM2	NM_021630	exon10	c.G1780T	p.A594S	TACTCCGCACCTG	.	60.0	27.0	40.0	1.0	.	42	.	.	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	hg19	9	2101571	2101571	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	SMARCA2	NM_139045	exon22	c.A3080C	p.E1027A	TAAAGGAATCCTT	.	445.0	322.0	694.0	0.0	.	313	.	.	Atlas-SNP
GNAQ	2776	hgsc.bcm.edu	hg19	9	80537112	80537112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	GNAQ,NS,carcinoma,0,2	GNAQ	NM_002072	exon2	c.A286T	p.T96S	TGAGTGTGTCCAT	.	57.0	4.0	50.0	1.0	.	384	.	.	Atlas-SNP
ASPN	54829	hgsc.bcm.edu	hg19	9	95237030	95237030	+	Missense_Mutation	SNP	A	A	C	rs143279922	bycluster	TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	ASPN	NM_001193335	exon2	c.T150G	p.D50E	CTCATCATCATCA	.	112.0	7.0	65.0	0.0	.	52	.	.	Atlas-SNP
UBAC1	10422	hgsc.bcm.edu	hg19	9	138838155	138838155	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	UBAC1	NM_016172	exon5	c.G504T	p.A168A	GTTCAGCGCTAAC	.	129.0	53.0	83.0	0.0	.	40	.	.	Atlas-SNP
C10orf137	26098	hgsc.bcm.edu	hg19	10	127451995	127451995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	C10orf137	NM_001202438	exon25	c.G3671T	p.G1224V	TGCTGGGCCAGCT	.	46.0	21.0	26.0	0.0	.	153	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1092885	1092885	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	MUC2_ENST00000441003,NS,carcinoma,+1,2	MUC2	NM_002457	exon30	c.G4704A	p.T1568T	CACCACGGTGACC	.	49.0	6.0	33.0	0.0	.	614	.	.	Atlas-SNP
CRY2	1408	hgsc.bcm.edu	hg19	11	45882443	45882443	+	Missense_Mutation	SNP	G	G	T	rs369560580	alternate_allele	TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	CRY2	NM_021117	exon4	c.G575T	p.R192L	ACAAGCGCTTTCA	.	89.0	39.0	66.0	0.0	.	61	.	.	Atlas-SNP
C11orf80	79703	hgsc.bcm.edu	hg19	11	66563768	66563768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	C11orf80	NM_024650	exon6	c.G650A	p.R217K	AGCCCAGAACCTT	.	195.0	82.0	137.0	0.0	.	31	.	.	Atlas-SNP
ENDOD1	23052	hgsc.bcm.edu	hg19	11	94823356	94823356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	ENDOD1	NM_015036	exon1	c.G265T	p.G89C	GCGCCCGGCGGCG	.	93.0	36.0	55.0	0.0	.	26	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103382043	103382043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	.	NM_001146197	exon4	c.G21004A	p.D7002N	TGATATCGTCATG	.	249.0	117.0	199.0	0.0	.	.	.	.	Atlas-SNP
HECTD1	25831	hgsc.bcm.edu	hg19	14	31642418	31642418	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	HECTD1	NM_015382	exon6	c.T1100C	p.I367T	CAATCTATAAGCT	.	207.0	76.0	169.0	0.0	.	159	.	.	Atlas-SNP
ABHD12B	145447	hgsc.bcm.edu	hg19	14	51352570	51352570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	ABHD12B,NS,carcinoma,0,1	ABHD12B	NM_001206673	exon7	c.G619A	p.G207S	AGAAGTGGCATCA	.	162.0	66.0	124.0	0.0	.	53	.	.	Atlas-SNP
WDR25	79446	hgsc.bcm.edu	hg19	14	100995511	100995511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	WDR25	NM_001161476	exon6	c.G1379A	p.R460Q	CCTACCGGATGAG	.	89.0	36.0	90.0	0.0	.	37	.	.	Atlas-SNP
CYFIP1	23191	hgsc.bcm.edu	hg19	15	22960851	22960851	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	CYFIP1	NM_014608	exon18	c.T2044A	p.F682I	ACCAGGTTCAACA	.	87.0	32.0	67.0	0.0	.	159	.	.	Atlas-SNP
ABCC6	368	hgsc.bcm.edu	hg19	16	16244619	16244619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	ABCC6	NM_001171	exon30	c.A4219G	p.K1407E	GCTGTTTCTGGCC	.	134.0	109.0	169.0	0.0	.	110	.	.	Atlas-SNP
MED1	5469	hgsc.bcm.edu	hg19	17	37566444	37566444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	MED1,colon,carcinoma,0,2	MED1	NM_004774	exon17	c.G2030A	p.R677H	TCCATGCGGGGTG	.	132.0	62.0	75.0	0.0	.	123	.	.	Atlas-SNP
RNF213	57674	hgsc.bcm.edu	hg19	17	78327346	78327346	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	RNF213	NM_001256071	exon34	c.G10458A	p.E3486E	CCATGAGGAGGCG	.	165.0	67.0	159.0	0.0	.	766	.	.	Atlas-SNP
PAK4	10298	hgsc.bcm.edu	hg19	19	39668341	39668341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	PAK4	NM_001014832	exon8	c.G1512T	p.M504I	GATAATGGTGATT	.	215.0	72.0	156.0	0.0	.	40	.	.	Atlas-SNP
ZNF222	7673	hgsc.bcm.edu	hg19	19	44535978	44535978	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	ZNF222	NM_001129996	exon4	c.A271T	p.I91F	GGCAAGATCCAAA	.	360.0	104.0	220.0	0.0	.	90	.	.	Atlas-SNP
C20orf26	26074	hgsc.bcm.edu	hg19	20	20340921	20340921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	C20orf26	NM_015585	exon27	c.A3581G	p.E1194G	CGACTGAGAAGCC	.	195.0	77.0	146.0	0.0	.	188	.	.	Atlas-SNP
SOGA1	140710	hgsc.bcm.edu	hg19	20	35443555	35443555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	SOGA1	NM_080627	exon5	c.G2290A	p.A764T	CTTTTGCCAGAAG	.	146.0	68.0	94.0	0.0	.	136	.	.	Atlas-SNP
TIAM1	7074	hgsc.bcm.edu	hg19	21	32492952	32492952	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	TIAM1	NM_003253	exon29	c.A4510G	p.I1504V	TGAGGATGTCTGT	.	78.0	34.0	57.0	0.0	.	522	.	.	Atlas-SNP
MAPK1	5594	hgsc.bcm.edu	hg19	22	22160239	22160239	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	MAPK1	NM_002745	exon3	c.A392G	p.Y131C	ATCTGGTAGAGAA	.	174.0	69.0	124.0	0.0	.	38	.	.	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	hg19	22	29885876	29885876	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	NEFH	NM_021076	exon4	c.G2247A	p.K749K	AGAGAAGGCCAAG	.	141.0	18.0	6.0	0.0	.	178	.	.	Atlas-SNP
TTLL1	25809	hgsc.bcm.edu	hg19	22	43464505	43464505	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	TTLL1	NM_012263	exon5	c.G414A	p.K138K	ACAAGGCTTCATG	.	117.0	35.0	118.0	0.0	.	41	.	.	Atlas-SNP
MAGEB4	4115	hgsc.bcm.edu	hg19	X	30261048	30261048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	MAGEB4	NM_002367	exon1	c.C796A	p.P266T	GATCCCCCACGCT	.	158.0	135.0	117.0	0.0	.	75	.	.	Atlas-SNP
NLGN1	22871	hgsc.bcm.edu	hg19	3	173996654	173996654	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	NLGN1	NM_014932	exon6	c.862delC	p.L288fs	.	.	54.0	17.0	40.0	0.0	.	209	.	.	Atlas-INDEL
ATP10B	23120	hgsc.bcm.edu	hg19	5	160047635	160047644	+	Frame_Shift_Del	DEL	CTGGCCAGGT	CTGGCCAGGT	-	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	CTGGCCAGGT	CTGGCCAGGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	ATP10B	NM_025153	exon15	c.2127_2136del	p.709_712del	.	.	97.0	39.0	63.0	0.0	.	201	.	.	Atlas-INDEL
ZNF227	7770	hgsc.bcm.edu	hg19	19	44739013	44739014	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	ZNF227	NM_182490	exon6	c.430_431insT	p.I144fs	.	.	733.0	196.0	397.0	0.0	.	62	.	.	Atlas-INDEL
PTDSS1	9791	hgsc.bcm.edu	hg19	8	97332514	97332514	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AACW-01A-11D-A40R-10	TCGA-DD-AACW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	990f7ea9-6799-410e-b224-27e27a625fb7	5dcdade5-76ff-4909-8133-c9f73a19baf7	.	PTDSS1	NM_014754	exon10	c.1113delT	p.F371fs	.	.	163.0	67.0	144.0	0.0	.	70	.	.	Atlas-INDEL
