Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
RPA2	6118	hgsc.bcm.edu	hg19	1	28224153	28224153	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	RPA2	NM_002946	exon5	c.A399T	p.R133S	AAAAGATCTCAGG	.	140.0	54.0	168.0	0.0	.	34	.	.	Atlas-SNP
PHC2	1912	hgsc.bcm.edu	hg19	1	33832762	33832762	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	PHC2	NM_198040	exon6	c.A931C	p.S311R	TCCGGCTGAGCCC	.	92.0	31.0	99.0	0.0	.	78	.	.	Atlas-SNP
NCDN	23154	hgsc.bcm.edu	hg19	1	36026670	36026670	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	NCDN	NM_014284	exon3	c.C918G	p.F306L	CAAGTTCCTGGCC	.	76.0	24.0	71.0	0.0	.	79	.	.	Atlas-SNP
C8A	731	hgsc.bcm.edu	hg19	1	57340763	57340763	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	C8A	NM_000562	exon3	c.A313G	p.T105A	AAGGAGACAGGTG	.	73.0	36.0	68.0	0.0	.	103	.	.	Atlas-SNP
ZZZ3	26009	hgsc.bcm.edu	hg19	1	78098130	78098130	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	ZZZ3	NM_015534	exon5	c.T910C	p.F304L	CAGAAAAGGGCCC	.	64.0	26.0	86.0	0.0	.	80	.	.	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	hg19	1	94466454	94466454	+	Silent	SNP	C	C	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	ABCA4	NM_000350	exon47	c.G6417C	p.R2139R	GGCCAGCCGGGTA	.	101.0	35.0	89.0	0.0	.	275	.	.	Atlas-SNP
TRIM46	80128	hgsc.bcm.edu	hg19	1	155147913	155147913	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	TRIM46	NM_025058	exon2	c.A115C	p.M39L	CAAGAGATGTACA	.	214.0	61.0	116.0	0.0	.	79	.	.	Atlas-SNP
CD1B	910	hgsc.bcm.edu	hg19	1	158301196	158301196	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	CD1B	NM_001764	exon1	c.T18A	p.F6L	CAGTTGAAATGGC	.	280.0	80.0	195.0	0.0	.	78	.	.	Atlas-SNP
APOBEC4	403314	hgsc.bcm.edu	hg19	1	183617328	183617328	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	APOBEC4,NS,carcinoma,0,1	APOBEC4	NM_203454	exon2	c.G589C	p.V197L	GGAGAACAGAATG	.	149.0	49.0	94.0	0.0	.	45	.	.	Atlas-SNP
LGR6	59352	hgsc.bcm.edu	hg19	1	202163206	202163206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	LGR6	NM_001017403	exon1	c.C89A	p.P30Q	CCGGCCCGGGGCC	.	28.0	18.0	12.0	0.0	.	102	.	.	Atlas-SNP
NUP133	55746	hgsc.bcm.edu	hg19	1	229633911	229633911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	NUP133	NM_018230	exon6	c.G791T	p.G264V	AAAATTCCAAAAA	.	163.0	46.0	113.0	0.0	.	111	.	.	Atlas-SNP
NUP133	55746	hgsc.bcm.edu	hg19	1	229633912	229633912	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	NUP133,colon,carcinoma,0,1	NUP133	NM_018230	exon6	c.G790T	p.G264X	AAATTCCAAAAAG	.	164.0	47.0	113.0	0.0	.	111	.	.	Atlas-SNP
CEP170	9859	hgsc.bcm.edu	hg19	1	243328222	243328222	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	CEP170	NM_014812	exon13	c.A3040T	p.R1014X	TTATTCTCCCACT	.	484.0	255.0	361.0	0.0	.	153	.	.	Atlas-SNP
OR2W5	441932	hgsc.bcm.edu	hg19	1	247655265	247655265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	OR2W5	NM_001004698	exon1	c.A836G	p.H279R	TTCTACACCATCG	.	241.0	70.0	168.0	0.0	.	97	.	.	Atlas-SNP
EIF2AK2	5610	hgsc.bcm.edu	hg19	2	37349710	37349710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	EIF2AK2	NM_001135651	exon12	c.A1006G	p.T336A	CACTGGTCTCAGG	.	111.0	49.0	74.0	0.0	.	54	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613036	73613036	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	ALMS1	NM_015120	exon1	c.G40C	p.E14Q	CTGGAGGAGGAGG	.	205.0	13.0	159.0	0.0	.	384	.	.	Atlas-SNP
RETSAT	54884	hgsc.bcm.edu	hg19	2	85571364	85571364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	RETSAT	NM_017750	exon8	c.C1364T	p.P455L	CCACCTGGGAATC	.	136.0	64.0	118.0	0.0	.	56	.	.	Atlas-SNP
KCNJ3	3760	hgsc.bcm.edu	hg19	2	155711241	155711241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	KCNJ3	NM_002239	exon3	c.A922G	p.M308V	GTAGGGATGACTT	.	59.0	25.0	83.0	0.0	.	126	.	.	Atlas-SNP
SP100	6672	hgsc.bcm.edu	hg19	2	231368974	231368974	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	SP100	NM_001080391	exon21	c.G1839A	p.K613K	GGTGAAGGGCACT	.	113.0	35.0	123.0	0.0	.	167	.	.	Atlas-SNP
CLASP2	23122	hgsc.bcm.edu	hg19	3	33759454	33759454	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	CLASP2	NM_015097	exon1	c.A41T	p.Q14L	TTCTGCTGCACCT	.	90.0	37.0	98.0	0.0	.	138	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266107	41266107	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	CTNNB1,NS,carcinoma,0,1	CTNNB1	NM_001098209	exon3	c.T104G	p.I35S	CTGGAATCCATTC	.	141.0	48.0	138.0	0.0	.	4904	.	.	Atlas-SNP
MST1R	4486	hgsc.bcm.edu	hg19	3	49936356	49936356	+	Missense_Mutation	SNP	C	C	T	rs148258933		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	MST1R	NM_001244937	exon3	c.G1492A	p.V498M	GCTGCACGGGCTG	.	191.0	87.0	209.0	0.0	.	205	.	C|1.000;T|0.000	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	hg19	3	52356615	52356615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	DNAH1	NM_015512	exon2	c.C157A	p.P53T	AATCCTCCAGCCC	.	79.0	33.0	85.0	0.0	.	534	.	.	Atlas-SNP
TKT	7086	hgsc.bcm.edu	hg19	3	53267208	53267208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	TKT	NM_001258028	exon7	c.A736G	p.I246V	CAATGATGGCTGT	.	91.0	37.0	70.0	0.0	.	38	.	.	Atlas-SNP
MRPS22	56945	hgsc.bcm.edu	hg19	3	139074588	139074588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	MRPS22	NM_020191	exon7	c.C943A	p.Q315K	TCGGCTCAAGGGG	.	178.0	83.0	196.0	0.0	.	40	.	.	Atlas-SNP
CCNL1	57018	hgsc.bcm.edu	hg19	3	156867722	156867722	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	CCNL1	NM_020307	exon8	c.A924G	p.V308V	TAAGGCTACTTTT	.	140.0	50.0	149.0	0.0	.	53	.	.	Atlas-SNP
SERPINI1	5274	hgsc.bcm.edu	hg19	3	167542319	167542319	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	SERPINI1	NM_005025	exon8	c.A1125G	p.P375P	CCATCCATTTTTC	.	82.0	35.0	75.0	0.0	.	52	.	.	Atlas-SNP
FETUB	26998	hgsc.bcm.edu	hg19	3	186364073	186364073	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	FETUB	NM_014375	exon5	c.A631T	p.I211F	TACTTAATTAAAG	.	134.0	59.0	115.0	0.0	.	53	.	.	Atlas-SNP
PCDH7	5099	hgsc.bcm.edu	hg19	4	30732375	30732375	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	PCDH7	NM_002589	exon2	c.A3175T	p.M1059L	TTTCAGATGCGTC	.	63.0	19.0	69.0	0.0	.	215	.	.	Atlas-SNP
ARAP2	116984	hgsc.bcm.edu	hg19	4	36230968	36230968	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	ARAP2	NM_015230	exon2	c.G141A	p.Q47Q	AATTTTCTGCAGC	.	168.0	67.0	168.0	0.0	.	210	.	.	Atlas-SNP
FRYL	285527	hgsc.bcm.edu	hg19	4	48636346	48636346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	FRYL	NM_015030	exon4	c.G82T	p.A28S	TTTCAGCTTGAAC	.	229.0	91.0	240.0	0.0	.	242	.	.	Atlas-SNP
FRYL	285527	hgsc.bcm.edu	hg19	4	48636368	48636368	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	FRYL	NM_015030	exon4	c.C60A	p.L20L	TGCAAAGAGGCTC	.	229.0	97.0	237.0	0.0	.	242	.	.	Atlas-SNP
AFM	173	hgsc.bcm.edu	hg19	4	74364862	74364862	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	AFM	NM_001133	exon11	c.C1321T	p.Q441X	GCTCCCCAACTCT	.	75.0	23.0	97.0	0.0	.	101	.	.	Atlas-SNP
SLC7A11	23657	hgsc.bcm.edu	hg19	4	139153531	139153531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	SLC7A11	NM_014331	exon3	c.C410T	p.A137V	GTAGCTGCAGGGC	.	224.0	110.0	206.0	0.0	.	40	.	.	Atlas-SNP
CCRN4L	25819	hgsc.bcm.edu	hg19	4	139966514	139966514	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	CCRN4L	NM_012118	exon3	c.G1182T	p.L394L	CGATCTGCTCACT	.	92.0	4.0	112.0	0.0	.	22	.	.	Atlas-SNP
ADAMTS12	81792	hgsc.bcm.edu	hg19	5	33616019	33616019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	ADAMTS12	NM_030955	exon15	c.G2302A	p.A768T	TCCCTGCCAGCTT	.	99.0	36.0	75.0	0.0	.	464	.	.	Atlas-SNP
SPEF2	79925	hgsc.bcm.edu	hg19	5	35807283	35807283	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	SPEF2	NM_024867	exon36	c.T5307C	p.I1769I	GCCAATTGAAGTC	.	85.0	34.0	91.0	0.0	.	324	.	.	Atlas-SNP
CARD6	84674	hgsc.bcm.edu	hg19	5	40843445	40843445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	CARD6	NM_032587	exon2	c.G475A	p.A159T	GAAACAGCTTTGT	.	168.0	59.0	157.0	0.0	.	141	.	.	Atlas-SNP
SLCO6A1	133482	hgsc.bcm.edu	hg19	5	101748694	101748694	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	SLCO6A1	NM_173488	exon9	c.G1626C	p.K542N	AATTACCTTTTTT	.	290.0	129.0	301.0	1.0	.	153	.	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	hg19	5	127744443	127744443	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	FBN2	NM_001999	exon8	c.T1002C	p.C334C	GTTGGAACATTCA	.	258.0	109.0	266.0	0.0	.	858	.	.	Atlas-SNP
PDLIM4	8572	hgsc.bcm.edu	hg19	5	131607555	131607555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	PDLIM4	NM_003687	exon6	c.G742A	p.G248S	CTGAGCGGCCTGC	.	74.0	37.0	65.0	0.0	.	22	.	.	Atlas-SNP
PROB1	389333	hgsc.bcm.edu	hg19	5	138728471	138728471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	.	NM_001161546	exon1	c.G2300A	p.R767H	ACCAGGCGCTGGG	.	87.0	38.0	72.0	0.0	.	.	.	.	Atlas-SNP
PCDHB16	57717	hgsc.bcm.edu	hg19	5	140562423	140562423	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	PCDHB16	NM_020957	exon1	c.G289C	p.G97R	CTATGCGGTCCCA	.	127.0	62.0	132.0	0.0	.	159	.	.	Atlas-SNP
TCOF1	6949	hgsc.bcm.edu	hg19	5	149753925	149753925	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	TCOF1	NM_001135243	exon8	c.G1059A	p.T353T	GGAGACGCCAGCT	.	238.0	96.0	216.0	0.0	.	154	.	.	Atlas-SNP
GALNT10	55568	hgsc.bcm.edu	hg19	5	153795396	153795396	+	Silent	SNP	C	C	T	rs145718506	bycluster;by1000genomes;alternate_allele	TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	GALNT10	NM_198321	exon11	c.C1557T	p.T519T	GCACACCAAGAAG	.	292.0	112.0	267.0	1.0	.	70	.	C|0.999;G|0.001	Atlas-SNP
ATP10B	23120	hgsc.bcm.edu	hg19	5	160059155	160059155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	ATP10B	NM_025153	exon13	c.T1601C	p.V534A	AAGGCCACAGGAG	.	60.0	28.0	55.0	0.0	.	201	.	.	Atlas-SNP
FLT4	2324	hgsc.bcm.edu	hg19	5	180043367	180043367	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	FLT4	NM_182925	exon23	c.T3219A	p.S1073R	ACTCACACTGCCC	.	57.0	19.0	78.0	0.0	.	356	.	.	Atlas-SNP
CD83	9308	hgsc.bcm.edu	hg19	6	14118190	14118190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	CD83	NM_004233	exon2	c.T47C	p.L16P	ACAGCCTGGCTCC	.	54.0	27.0	41.0	0.0	.	23	.	.	Atlas-SNP
SLC35B2	347734	hgsc.bcm.edu	hg19	6	44224447	44224447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	SLC35B2	NM_178148	exon2	c.C180A	p.F60L	CCGCCTGAAGTAC	.	214.0	91.0	188.0	0.0	.	40	.	.	Atlas-SNP
CEP57L1	285753	hgsc.bcm.edu	hg19	6	109481821	109481821	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	CEP57L1	NM_001271853	exon10	c.T1063G	p.S355A	AGTCATTCAGTCT	.	362.0	173.0	398.0	0.0	.	24	.	.	Atlas-SNP
SLC22A16	85413	hgsc.bcm.edu	hg19	6	110763848	110763848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	SLC22A16	NM_033125	exon4	c.G782T	p.G261V	AAGTATCCTGTCA	.	112.0	46.0	106.0	0.0	.	81	.	.	Atlas-SNP
NCOA7	135112	hgsc.bcm.edu	hg19	6	126199417	126199417	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	NCOA7	NM_001199619	exon6	c.C360G	p.N120K	TGGAAACCAGGAC	.	104.0	46.0	115.0	0.0	.	92	.	.	Atlas-SNP
IL20RA	53832	hgsc.bcm.edu	hg19	6	137330583	137330583	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	IL20RA	NM_014432	exon4	c.C450A	p.S150S	AGAAATGGACTTC	.	96.0	33.0	89.0	0.0	.	54	.	.	Atlas-SNP
FNDC1	84624	hgsc.bcm.edu	hg19	6	159672391	159672391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	FNDC1	NM_032532	exon17	c.C4892A	p.A1631E	CTGATGCACTGGA	.	107.0	36.0	74.0	0.0	.	250	.	.	Atlas-SNP
IKZF1	10320	hgsc.bcm.edu	hg19	7	50450271	50450271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	IKZF1	NM_006060	exon5	c.C455T	p.A152V	GCGGGGCCTCATT	.	64.0	24.0	53.0	0.0	.	613	.	.	Atlas-SNP
RUNDC3B	154661	hgsc.bcm.edu	hg19	7	87369128	87369128	+	Silent	SNP	A	A	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	RUNDC3B	NM_138290	exon6	c.A531C	p.A177A	TGGAGCAATTGTC	.	57.0	20.0	66.0	0.0	.	63	.	.	Atlas-SNP
PTPRZ1	5803	hgsc.bcm.edu	hg19	7	121652900	121652900	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	PTPRZ1	NM_002851	exon12	c.A3800T	p.E1267V	CAAGTGAGAAATA	.	91.0	36.0	94.0	0.0	.	605	.	.	Atlas-SNP
ZMAT4	79698	hgsc.bcm.edu	hg19	8	40532253	40532253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	ZMAT4	NM_024645	exon5	c.G547T	p.G183W	TTGTCCCCAGTTG	.	100.0	42.0	105.0	0.0	.	47	.	.	Atlas-SNP
KIAA1429	25962	hgsc.bcm.edu	hg19	8	95508121	95508121	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	KIAA1429	NM_015496	exon20	c.4384-2A>G	.	TGTTCCTAGATAC	.	61.0	23.0	59.0	0.0	.	176	.	.	Atlas-SNP
COL14A1	7373	hgsc.bcm.edu	hg19	8	121282378	121282378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	COL14A1	NM_021110	exon26	c.G3178A	p.G1060R	ACTGTTGGAGCCC	.	83.0	35.0	85.0	0.0	.	292	.	.	Atlas-SNP
KLHL38	340359	hgsc.bcm.edu	hg19	8	124664197	124664197	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	KLHL38	NM_001081675	exon1	c.A970G	p.K324E	AGGCCTTGTACAG	.	109.0	50.0	80.0	0.0	.	81	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79318782	79318782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	PRUNE2	NM_015225	exon9	c.G7747A	p.E2583K	CTGTTTCTTTGGA	.	84.0	36.0	101.0	0.0	.	331	.	.	Atlas-SNP
GNAQ	2776	hgsc.bcm.edu	hg19	9	80537145	80537145	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	GNAQ	NM_002072	exon2	c.A253C	p.T85P	TGGCCGTGAAGAT	.	57.0	20.0	67.0	0.0	.	384	.	.	Atlas-SNP
FBP2	8789	hgsc.bcm.edu	hg19	9	97325637	97325637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	FBP2	NM_003837	exon6	c.G812T	p.S271I	TTAGGGCTCTTCT	.	64.0	27.0	91.0	0.0	.	26	.	.	Atlas-SNP
OR13C3	138803	hgsc.bcm.edu	hg19	9	107298521	107298521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	OR13C3	NM_001001961	exon1	c.C574T	p.L192F	TGGCAAGTAATGT	.	169.0	81.0	124.0	0.0	.	45	.	.	Atlas-SNP
OR1L3	26735	hgsc.bcm.edu	hg19	9	125437750	125437750	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	OR1L3	NM_001005234	exon1	c.C342A	p.L114L	TTATCTCCTGGCG	.	76.0	25.0	62.0	0.0	.	51	.	.	Atlas-SNP
NR5A1	2516	hgsc.bcm.edu	hg19	9	127253385	127253385	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	NR5A1	NM_004959	exon6	c.C1113T	p.L371L	GAACTTGAGGCAG	.	131.0	53.0	131.0	0.0	.	32	.	.	Atlas-SNP
RALGDS	5900	hgsc.bcm.edu	hg19	9	135983386	135983386	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	RALGDS	NM_006266	exon6	c.C1186T	p.L396L	CCATCAGTGTAAA	.	67.0	26.0	74.0	0.0	.	75	.	.	Atlas-SNP
TAF3	83860	hgsc.bcm.edu	hg19	10	8051233	8051233	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	TAF3	NM_031923	exon5	c.C2508T	p.S836S	CGCCTCCGGGGCC	.	51.0	29.0	49.0	0.0	.	93	.	.	Atlas-SNP
KIAA1217	56243	hgsc.bcm.edu	hg19	10	24832401	24832401	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	KIAA1217	NM_019590	exon19	c.A4202G	p.H1401R	AGGTGCATGATAT	.	113.0	55.0	138.0	0.0	.	235	.	.	Atlas-SNP
SVIL	6840	hgsc.bcm.edu	hg19	10	29818721	29818721	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	SVIL	NM_021738	exon12	c.A2159C	p.N720T	GCTGTGTTTCTTG	.	64.0	28.0	68.0	0.0	.	226	.	.	Atlas-SNP
GJD4	219770	hgsc.bcm.edu	hg19	10	35897329	35897329	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	GJD4	NM_153368	exon2	c.T888A	p.S296R	TGAGAGTGAGGTG	.	65.0	26.0	68.0	0.0	.	38	.	.	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	hg19	10	55780163	55780163	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	PCDH15_ENST00000417177,colon,carcinoma,-1,4	PCDH15	NM_001142763	exon21	c.A2555T	p.D852V	CCAAGGTCGACAT	.	74.0	22.0	65.0	0.0	.	1715	.	.	Atlas-SNP
LRRTM3	347731	hgsc.bcm.edu	hg19	10	68686716	68686716	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	LRRTM3	NM_178011	exon2	c.A42G	p.V14V	AGCTGTAGCACTG	.	85.0	36.0	98.0	0.0	.	241	.	.	Atlas-SNP
TYSND1	219743	hgsc.bcm.edu	hg19	10	71905831	71905831	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	TYSND1,NS,carcinoma,0,1	TYSND1	NM_173555	exon1	c.C512G	p.S171W	TCCTCCGACACTT	.	132.0	55.0	101.0	1.0	.	20	.	.	Atlas-SNP
AKIP1	56672	hgsc.bcm.edu	hg19	11	8940933	8940933	+	Missense_Mutation	SNP	A	A	C	rs148121612	alternate_allele	TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	AKIP1	NM_020642	exon6	c.A539C	p.Y180S	GGACCTATTCTGT	.	100.0	41.0	81.0	0.0	.	9	.	A|1.000;G|0.000	Atlas-SNP
KIAA1549L	25758	hgsc.bcm.edu	hg19	11	33628297	33628297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	.	NM_012194	exon13	c.C4099T	p.P1367S	ATAAAACCCACAG	.	111.0	43.0	135.0	0.0	.	.	.	.	Atlas-SNP
FNBP4	23360	hgsc.bcm.edu	hg19	11	47765677	47765677	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	FNBP4	NM_015308	exon8	c.G1284A	p.V428V	CCCTGACACACTA	.	89.0	50.0	81.0	0.0	.	99	.	.	Atlas-SNP
OR5D14	219436	hgsc.bcm.edu	hg19	11	55563337	55563337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	OR5D14	NM_001004735	exon1	c.G306T	p.Q102H	GATGCAGTACTTC	.	81.0	32.0	82.0	0.0	.	116	.	.	Atlas-SNP
SLC29A2	3177	hgsc.bcm.edu	hg19	11	66136932	66136932	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	SLC29A2,NS,carcinoma,0,1	SLC29A2	NM_001532	exon3	c.C183T	p.P61P	ATCCTCGGGACCC	.	124.0	63.0	107.0	0.0	.	24	.	.	Atlas-SNP
APOA1	335	hgsc.bcm.edu	hg19	11	116707867	116707867	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	APOA1	NM_000039	exon3	c.A50T	p.Q17L	CGAGCCTGGCTCC	.	42.0	19.0	42.0	0.0	.	19	.	.	Atlas-SNP
ROBO3	64221	hgsc.bcm.edu	hg19	11	124740076	124740076	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	ROBO3	NM_022370	exon5	c.T782A	p.L261Q	CATTCCTGCGCAG	.	117.0	54.0	107.0	0.0	.	199	.	.	Atlas-SNP
SLC37A2	219855	hgsc.bcm.edu	hg19	11	124949588	124949588	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	SLC37A2	NM_001145290	exon6	c.T459C	p.N153N	CTGTAATGGACTC	.	112.0	43.0	111.0	0.0	.	105	.	.	Atlas-SNP
CCND2	894	hgsc.bcm.edu	hg19	12	4387935	4387935	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	CCND2	NM_001759	exon3	c.C421G	p.L141V	TGGGAACTGGTGG	.	62.0	23.0	63.0	0.0	.	50	.	.	Atlas-SNP
KCNH3	23416	hgsc.bcm.edu	hg19	12	49943969	49943969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	KCNH3	NM_012284	exon10	c.G1775A	p.R592Q	GCCTGCGGGCACT	.	79.0	42.0	80.0	0.0	.	88	.	.	Atlas-SNP
STAB2	55576	hgsc.bcm.edu	hg19	12	104100584	104100584	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	STAB2	NM_017564	exon38	c.T4011C	p.C1337C	ATGCTGTGCCGGC	.	97.0	34.0	107.0	0.0	.	370	.	.	Atlas-SNP
GOLGA3	2802	hgsc.bcm.edu	hg19	12	133353241	133353241	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	GOLGA3,right_upper_lobe,carcinoma,0,2	GOLGA3	NM_005895	exon21	c.A3957G	p.E1319E	TAGCCCTTCCAGT	.	34.0	3.0	24.0	0.0	.	234	.	.	Atlas-SNP
ZDHHC20	253832	hgsc.bcm.edu	hg19	13	22033279	22033279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	ZDHHC20	NM_153251	exon1	c.A32G	p.Q11R	ACGCGCTGGCAGC	.	185.0	61.0	133.0	0.0	.	36	.	.	Atlas-SNP
NAA16	79612	hgsc.bcm.edu	hg19	13	41910840	41910840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	NAA16	NM_001110798	exon9	c.G962T	p.G321V	GTAAAGGCTGCCC	.	106.0	39.0	135.0	0.0	.	74	.	.	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77751932	77751932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	MYCBP2	NM_015057	exon35	c.A5291G	p.Y1764C	CCTCCATAGACAG	.	113.0	40.0	108.0	0.0	.	1029	.	.	Atlas-SNP
FRMD6	122786	hgsc.bcm.edu	hg19	14	52188702	52188702	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	FRMD6	NM_001267046	exon12	c.G1396T	p.E466X	GATCTGGAGCAGA	.	93.0	40.0	81.0	0.0	.	100	.	.	Atlas-SNP
EDC3	80153	hgsc.bcm.edu	hg19	15	74967425	74967425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	EDC3	NM_001142444	exon3	c.G41A	p.C14Y	TCTCCACAATTGA	.	70.0	28.0	50.0	0.0	.	32	.	.	Atlas-SNP
GRIN2A	2903	hgsc.bcm.edu	hg19	16	9943750	9943750	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	GRIN2A	NM_000833	exon6	c.C1191T	p.S397S	ACAGTCGGAGAAG	.	90.0	38.0	88.0	0.0	.	366	.	.	Atlas-SNP
CPPED1	55313	hgsc.bcm.edu	hg19	16	12897629	12897629	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	CPPED1	NM_001099455	exon1	c.C5A	p.S2X	GCAGCCGACATGG	.	94.0	30.0	96.0	0.0	.	41	.	.	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	hg19	16	21053420	21053420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	DNAH3	NM_017539	exon32	c.C4567T	p.P1523S	AGGTTGGGTTCAG	.	98.0	49.0	84.0	0.0	.	1142	.	.	Atlas-SNP
SEZ6L2	26470	hgsc.bcm.edu	hg19	16	29908302	29908302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	SEZ6L2	NM_001243332	exon3	c.A352G	p.T118A	GCGCAGTGGGGCC	.	44.0	17.0	39.0	0.0	.	137	.	.	Atlas-SNP
PRSS8	5652	hgsc.bcm.edu	hg19	16	31144008	31144008	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	PRSS8	NM_002773	exon4	c.C533G	p.P178R	CCTGAGGGGGCCA	.	77.0	33.0	53.0	0.0	.	24	.	.	Atlas-SNP
RBL2	5934	hgsc.bcm.edu	hg19	16	53498217	53498217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	RBL2,rectum,NS,0,1	RBL2	NM_005611	exon12	c.C1640T	p.P547L	AGCCTCCTGGGAA	.	100.0	46.0	126.0	0.0	.	115	.	.	Atlas-SNP
EDC4	23644	hgsc.bcm.edu	hg19	16	67907167	67907167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	EDC4	NM_014329	exon1	c.G3A	p.M1I	GCCCATGGCCTCC	.	87.0	33.0	80.0	0.0	.	101	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88496738	88496738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	ZNF469	NM_001127464	exon1	c.T2860C	p.F954L	AAGCTGTTCCGGA	.	624.0	256.0	622.0	0.0	.	121	.	.	Atlas-SNP
MYO15A	51168	hgsc.bcm.edu	hg19	17	18023832	18023832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	MYO15A	NM_016239	exon2	c.C1718T	p.A573V	CGCTTGCGCGGTT	.	250.0	179.0	330.0	0.0	.	268	.	.	Atlas-SNP
SLC47A1	55244	hgsc.bcm.edu	hg19	17	19454772	19454772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	SLC47A1	NM_018242	exon6	c.G534T	p.L178F	ATATTTGCTCAAC	.	35.0	27.0	73.0	0.0	.	55	.	.	Atlas-SNP
TAOK1	57551	hgsc.bcm.edu	hg19	17	27835056	27835056	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	TAOK1	NM_025142	exon14	c.T1481G	p.L494R	ATCGCCTCAGATT	.	277.0	55.0	194.0	0.0	.	151	.	.	Atlas-SNP
KRT28	162605	hgsc.bcm.edu	hg19	17	38955938	38955938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	KRT28	NM_181535	exon1	c.G208A	p.A70T	TACAAGCAGCATT	.	164.0	52.0	98.0	0.0	.	65	.	.	Atlas-SNP
TMEM101	84336	hgsc.bcm.edu	hg19	17	42089361	42089361	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	TMEM101	NM_032376	exon4	c.A709G	p.M237V	GCTTCATCTGGTT	.	106.0	26.0	56.0	0.0	.	18	.	.	Atlas-SNP
STRADA	92335	hgsc.bcm.edu	hg19	17	61781755	61781755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	STRADA	NM_001003787	exon11	c.C1046T	p.S349F	TGGGGGGAGAAGG	.	49.0	29.0	50.0	0.0	.	27	.	.	Atlas-SNP
CDK3	1018	hgsc.bcm.edu	hg19	17	73999349	73999349	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	CDK3	NM_001258	exon7	c.C662G	p.T221R	TGGGGACACCCAG	.	119.0	30.0	112.0	0.0	.	31	.	.	Atlas-SNP
OR7A5	26659	hgsc.bcm.edu	hg19	19	14938490	14938490	+	Silent	SNP	A	A	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	OR7A5	NM_017506	exon1	c.T564G	p.A188A	AGAACAAGCAAGT	.	239.0	95.0	212.0	0.0	.	43	.	.	Atlas-SNP
OR7A5	26659	hgsc.bcm.edu	hg19	19	14938512	14938512	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	OR7A5	NM_017506	exon1	c.T542G	p.L181R	TGATTAAGTTCAC	.	237.0	95.0	230.0	0.0	.	43	.	.	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	hg19	19	22942100	22942100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	ZNF99	NM_001080409	exon4	c.A611G	p.E204G	CGTTCTTCACATT	.	38.0	23.0	30.0	0.0	.	273	.	.	Atlas-SNP
PVR	5817	hgsc.bcm.edu	hg19	19	45153129	45153129	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	PVR	NM_001135769	exon3	c.A476G	p.E159G	CTGGAGAGCCAGT	.	59.0	29.0	79.0	0.0	.	23	.	.	Atlas-SNP
PVR	5817	hgsc.bcm.edu	hg19	19	45153140	45153140	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	PVR	NM_001135769	exon3	c.A487C	p.M163L	GTGCCCATGGCCC	.	62.0	28.0	76.0	0.0	.	23	.	.	Atlas-SNP
SIGLEC6	946	hgsc.bcm.edu	hg19	19	52031035	52031035	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	SIGLEC6	NM_001245	exon7	c.A1154C	p.D385A	ACATCATCCGTGT	.	77.0	34.0	90.0	0.0	.	142	.	.	Atlas-SNP
FPR2	2358	hgsc.bcm.edu	hg19	19	52272248	52272248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	FPR2	NM_001005738	exon2	c.G337A	p.V113I	GGAAGTGTCTTCT	.	92.0	38.0	91.0	0.0	.	66	.	.	Atlas-SNP
ZNF665	79788	hgsc.bcm.edu	hg19	19	53667735	53667735	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	ZNF665	NM_024733	exon4	c.G2008C	p.A670P	GTTTTGCAAGGTT	.	44.0	13.0	42.0	0.0	.	136	.	.	Atlas-SNP
SSC5D	284297	hgsc.bcm.edu	hg19	19	56000833	56000833	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	SSC5D	NM_001195267	exon3	c.C165T	p.A55A	TGCCGCCGTGGCC	.	46.0	15.0	34.0	0.0	.	65	.	.	Atlas-SNP
ZNF132	7691	hgsc.bcm.edu	hg19	19	58945805	58945805	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	ZNF132	NM_003433	exon3	c.C1006G	p.H336D	GATGATGAACAAA	.	94.0	4.0	91.0	0.0	.	56	.	.	Atlas-SNP
TMC2	117532	hgsc.bcm.edu	hg19	20	2591139	2591139	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	TMC2	NM_080751	exon12	c.C1488T	p.Y496Y	GAATTACCACCCA	.	83.0	65.0	110.0	0.0	.	121	.	.	Atlas-SNP
CRLS1	54675	hgsc.bcm.edu	hg19	20	6012689	6012689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	CRLS1	NM_019095	exon5	c.A692G	p.Y231C	CTTGCTATGCCAC	.	220.0	174.0	496.0	0.0	.	14	.	.	Atlas-SNP
LRRN4	164312	hgsc.bcm.edu	hg19	20	6022515	6022515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	LRRN4	NM_152611	exon5	c.G1376T	p.G459V	TGTTCTCCTCGGT	.	60.0	45.0	74.0	0.0	.	54	.	.	Atlas-SNP
SDC4	6385	hgsc.bcm.edu	hg19	20	43956037	43956037	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	SDC4	NM_002999	exon5	c.T464C	p.I155T	CCCACGATGCCAC	.	54.0	16.0	58.0	0.0	.	16	.	.	Atlas-SNP
PMEPA1	56937	hgsc.bcm.edu	hg19	20	56227494	56227494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	PMEPA1,NS,carcinoma,0,1	PMEPA1	NM_020182	exon4	c.C479A	p.P160H	TGGTAGGGTGGGG	.	89.0	31.0	61.0	0.0	.	29	.	.	Atlas-SNP
OPRL1	4987	hgsc.bcm.edu	hg19	20	62729870	62729870	+	Silent	SNP	G	G	A	rs144338110	alternate_allele	TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	OPRL1	NM_000913	exon4	c.G831A	p.T277T	CTGGACGCCTGTC	.	101.0	55.0	85.0	0.0	.	47	.	G|1.000;T|0.000	Atlas-SNP
POTEH	23784	hgsc.bcm.edu	hg19	22	16267071	16267071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	POTEH,NS,carcinoma,0,1	POTEH	NM_001136213	exon9	c.G1378A	p.G460R	TACTTCCGTGCTT	.	971.0	133.0	918.0	0.0	.	114	.	.	Atlas-SNP
CABIN1	23523	hgsc.bcm.edu	hg19	22	24494016	24494016	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	CABIN1	NM_001199281	exon26	c.A3978G	p.S1326S	CTCTTCAGCTGGG	.	153.0	61.0	134.0	0.0	.	153	.	.	Atlas-SNP
PLA2G6	8398	hgsc.bcm.edu	hg19	22	38524361	38524361	+	Silent	SNP	G	G	A	rs375896475		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	PLA2G6	NM_003560	exon9	c.C1263T	p.V421V	CGCGGGGACCCCG	.	94.0	44.0	79.0	0.0	.	54	.	.	Atlas-SNP
ADSL	158	hgsc.bcm.edu	hg19	22	40742624	40742624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	ADSL	NM_001123378	exon1	c.A62G	p.Y21C	CCCGCTATGCCAG	.	41.0	17.0	46.0	0.0	.	98	.	.	Atlas-SNP
EP300	2033	hgsc.bcm.edu	hg19	22	41574913	41574913	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	EP300	NM_001429	exon31	c.T7198A	p.S2400T	GATAACTCAGACT	.	84.0	29.0	65.0	0.0	.	367	.	.	Atlas-SNP
ZC3H7B	23264	hgsc.bcm.edu	hg19	22	41723227	41723227	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	ZC3H7B	NM_017590	exon5	c.G303T	p.A101A	GAAGGCGCTGGAG	.	52.0	19.0	63.0	0.0	.	82	.	.	Atlas-SNP
TBC1D25	4943	hgsc.bcm.edu	hg19	X	48418426	48418426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	TBC1D25	NM_002536	exon6	c.T1130C	p.F377S	CCAAGTTTGCACA	.	50.0	41.0	47.0	0.0	.	70	.	.	Atlas-SNP
ZNF337	26152	hgsc.bcm.edu	hg19	20	25655715	25655718	+	Frame_Shift_Del	DEL	GTAA	GTAA	-	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	GTAA	GTAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	ZNF337	NM_015655	exon5	c.2207_2210del	p.736_737del	.	.	83.0	38.0	81.0	0.0	.	65	.	.	Atlas-INDEL
KIF4B	285643	hgsc.bcm.edu	hg19	5	154396709	154396714	+	In_Frame_Del	DEL	AGCAGT	AGCAGT	-	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	AGCAGT	AGCAGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	KIF4B	NM_001099293	exon1	c.3289_3294del	p.1097_1098del	.	.	228.0	88.0	233.0	0.0	.	307	.	.	Atlas-INDEL
DAAM1	23002	hgsc.bcm.edu	hg19	14	59834319	59834320	+	Splice_Site	INS	-	-	GA	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	DAAM1	NM_001270520	exon24	c.2997+2->GA	.	.	.	36.0	23.0	75.0	0.0	.	95	.	.	Atlas-INDEL
CFP	5199	hgsc.bcm.edu	hg19	X	47485892	47485892	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	CFP	NM_001145252	exon7	c.968delA	p.E323fs	.	.	57.0	47.0	67.0	0.0	.	43	.	.	Atlas-INDEL
PUM2	23369	hgsc.bcm.edu	hg19	2	20507799	20507800	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	PUM2	NM_015317	exon6	c.823_824insAA	p.Q275fs	.	.	55.0	23.0	57.0	0.0	.	91	.	.	Atlas-INDEL
FLCN	201163	hgsc.bcm.edu	hg19	17	17127383	17127385	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	FLCN	NM_144997	exon6	c.470_472del	p.157_158del	.	.	71.0	44.0	108.0	0.0	.	87	.	.	Atlas-INDEL
LAMA1	284217	hgsc.bcm.edu	hg19	18	6965285	6965307	+	Frame_Shift_Del	DEL	TACCTTGCTTCCGGTTTCGCTGG	TACCTTGCTTCCGGTTTCGCTGG	-	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	TACCTTGCTTCCGGTTTCGCTGG	TACCTTGCTTCCGGTTTCGCTGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	LAMA1	NM_005559	exon50	c.7177_7195del	p.2393_2399del	.	.	74.0	18.0	93.0	0.0	.	458	.	.	Atlas-INDEL
DLX6	1750	hgsc.bcm.edu	hg19	7	96635364	96635369	+	In_Frame_Del	DEL	GCAGCA	GCAGCA	-	rs5885995	alternate_allele	TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	GCAGCA	GCAGCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	DLX6	NM_005222	exon1	c.74_79del	p.25_27del	.	.	26.0	12.0	34.0	0.0	.	37	.	.	Atlas-INDEL
BRD2	6046	hgsc.bcm.edu	hg19	6	32947653	32947653	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	BRD2	NM_001199455	exon11	c.1994delG	p.G665fs	.	.	108.0	50.0	122.0	0.0	.	70	.	.	Atlas-INDEL
CCDC138	165055	hgsc.bcm.edu	hg19	2	109411169	109411170	+	Frame_Shift_Ins	INS	-	-	AATTG	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	CCDC138	NM_144978	exon5	c.568_569insAATTG	p.K190fs	.	.	71.0	26.0	81.0	0.0	.	49	.	.	Atlas-INDEL
CEACAM1	634	hgsc.bcm.edu	hg19	19	43023248	43023249	+	In_Frame_Ins	INS	-	-	AGACTC	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	CEACAM1	NM_001205344	exon5	c.1098_1099insGAGTCT	p.L366delinsLSL	.	.	146.0	49.0	185.0	0.0	.	43	.	.	Atlas-INDEL
DNAH6	1768	hgsc.bcm.edu	hg19	2	84960668	84960668	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AACX-01A-11D-A40R-10	TCGA-DD-AACX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a122c38-1433-433c-855c-db0cc9656a78	7645f6cb-664b-4790-b507-7f04d533a3d2	.	DNAH6	NM_001370	exon62	c.10306delC	p.Q3436fs	.	.	138.0	48.0	121.0	0.0	.	194	.	.	Atlas-INDEL
