Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
SCMH1	22955	hgsc.bcm.edu	hg19	1	41608748	41608748	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	SCMH1	NM_001172219	exon6	c.A214T	p.M72L	ATTTCATACTGAT	.	56.0	20.0	65.0	0.0	.	120	.	.	Atlas-SNP
JAK1	3716	hgsc.bcm.edu	hg19	1	65311203	65311203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	JAK1,colon,carcinoma,-1,6	JAK1	NM_002227	exon15	c.G2108T	p.S703I	AAGTAGCTCAGGG	.	62.0	29.0	84.0	0.0	.	209	.	.	Atlas-SNP
JAK1	3716	hgsc.bcm.edu	hg19	1	65311219	65311219	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	JAK1	NM_002227	exon15	c.C2092T	p.L698L	TGGCCAGCTGTTT	.	67.0	31.0	92.0	0.0	.	209	.	.	Atlas-SNP
WDR63	126820	hgsc.bcm.edu	hg19	1	85537689	85537689	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	WDR63	NM_145172	exon2	c.64+1G>A	.	TAGCTGGTAGGAA	.	210.0	80.0	285.0	1.0	.	91	.	.	Atlas-SNP
RWDD3	25950	hgsc.bcm.edu	hg19	1	95710153	95710153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	RWDD3	NM_001128142	exon2	c.A472G	p.I158V	GTCAAAATTGTGG	.	137.0	57.0	149.0	0.0	.	24	.	.	Atlas-SNP
PALMD	54873	hgsc.bcm.edu	hg19	1	100152744	100152744	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	PALMD,NS,carcinoma,0,1	PALMD	NM_017734	exon6	c.A513G	p.K171K	TAGGAAAGGTATA	.	307.0	107.0	359.0	0.0	.	64	.	.	Atlas-SNP
CELSR2	1952	hgsc.bcm.edu	hg19	1	109814231	109814231	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	CELSR2	NM_001408	exon28	c.A7813T	p.I2605F	CCCTTCATCTTCC	.	91.0	43.0	104.0	0.0	.	228	.	.	Atlas-SNP
ETV3	2117	hgsc.bcm.edu	hg19	1	157103988	157103988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	ETV3	NM_005240	exon4	c.A316C	p.T106P	CTTTTGTTTTATG	.	111.0	45.0	85.0	0.0	.	50	.	.	Atlas-SNP
ETV3	2117	hgsc.bcm.edu	hg19	1	157104005	157104005	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	ETV3	NM_005240	exon4	c.A299G	p.K100R	ATCCTCTTGTTGT	.	101.0	38.0	78.0	0.0	.	50	.	.	Atlas-SNP
C1orf112	55732	hgsc.bcm.edu	hg19	1	169819420	169819420	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	C1orf112	NM_018186	exon22	c.A2178C	p.E726D	TCATGAAGAGATA	.	101.0	42.0	64.0	0.0	.	74	.	.	Atlas-SNP
TOR3A	64222	hgsc.bcm.edu	hg19	1	179063230	179063230	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	TOR3A	NM_022371	exon5	c.A821T	p.N274I	TCAGTAATCTCAG	.	133.0	48.0	104.0	0.0	.	28	.	.	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	hg19	1	225525877	225525877	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	DNAH14	NM_001373	exon66	c.A10147T	p.N3383Y	AATTCAAATTTTA	.	401.0	194.0	249.0	0.0	.	300	.	.	Atlas-SNP
OSR1	130497	hgsc.bcm.edu	hg19	2	19553489	19553489	+	Silent	SNP	T	T	G	rs368651434	alternate_allele	TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	OSR1	NM_145260	exon2	c.A78C	p.A26A	GTTCACTGCCTGA	.	98.0	42.0	104.0	0.0	.	29	.	.	Atlas-SNP
DHX57	90957	hgsc.bcm.edu	hg19	2	39033812	39033812	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	DHX57	NM_198963	exon22	c.T3705G	p.F1235L	CTTCTGAAATTTT	.	100.0	38.0	102.0	0.0	.	127	.	.	Atlas-SNP
HAAO	23498	hgsc.bcm.edu	hg19	2	43019665	43019665	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	HAAO	NM_012205	exon1	c.C12T	p.R4R	TCCCAGGCGGCGC	.	69.0	27.0	91.0	0.0	.	26	.	.	Atlas-SNP
EPAS1	2034	hgsc.bcm.edu	hg19	2	46609728	46609728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	EPAS1	NM_001430	exon15	c.A2452G	p.K818E	GCCCACAAGGTGT	.	90.0	33.0	79.0	0.0	.	83	.	.	Atlas-SNP
FOXN2	3344	hgsc.bcm.edu	hg19	2	48602189	48602189	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	FOXN2	NM_002158	exon7	c.T903G	p.D301E	AGAAGATCACAAT	.	104.0	36.0	146.0	0.0	.	39	.	.	Atlas-SNP
NOTO	344022	hgsc.bcm.edu	hg19	2	73438052	73438052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	NOTO	NM_001134462	exon3	c.G751A	p.G251S	GTGGACGGCTGAA	.	63.0	6.0	94.0	0.0	.	20	.	.	Atlas-SNP
KIF5C	3800	hgsc.bcm.edu	hg19	2	149868088	149868088	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	KIF5C	NM_004522	exon25	c.G2772A	p.K924K	AGCCAAGCCCATC	.	68.0	23.0	66.0	0.0	.	166	.	.	Atlas-SNP
ITGA6	3655	hgsc.bcm.edu	hg19	2	173338923	173338923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	ITGA6	NM_000210	exon6	c.A916G	p.I306V	GAGCACATATTCG	.	121.0	45.0	129.0	0.0	.	171	.	.	Atlas-SNP
PDK1	5163	hgsc.bcm.edu	hg19	2	173429803	173429803	+	Splice_Site	SNP	T	T	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	PDK1	NM_002610	exon5	c.691+2T>G	.	TAAAGGTAAATAC	.	80.0	27.0	74.0	0.0	.	39	.	.	Atlas-SNP
HECW2	57520	hgsc.bcm.edu	hg19	2	197092916	197092916	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	HECW2	NM_020760	exon22	c.C3827G	p.P1276R	TAATATGGGTTAA	.	250.0	110.0	282.0	0.0	.	239	.	.	Atlas-SNP
SMARCAL1	50485	hgsc.bcm.edu	hg19	2	217341834	217341834	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	SMARCAL1	NM_014140	exon16	c.G2430T	p.V810V	ACAGGTGCTGATC	.	37.0	15.0	46.0	0.0	.	93	.	.	Atlas-SNP
SRGAP3	9901	hgsc.bcm.edu	hg19	3	9102039	9102039	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	SRGAP3	NM_014850	exon6	c.A677C	p.Q226P	TTGGCCTGCCTCT	.	75.0	29.0	86.0	0.0	.	146	.	.	Atlas-SNP
PPARG	5468	hgsc.bcm.edu	hg19	3	12458591	12458591	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	PPARG	NM_015869	exon6	c.A1208T	p.N403I	AGTTCAATGCACT	.	70.0	20.0	110.0	0.0	.	49	.	.	Atlas-SNP
PXK	54899	hgsc.bcm.edu	hg19	3	58410540	58410540	+	Silent	SNP	T	T	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	PXK	NM_017771	exon18	c.T1590G	p.P530P	GCCTCCTGCGAGC	.	137.0	47.0	143.0	0.0	.	89	.	.	Atlas-SNP
SEMA5B	54437	hgsc.bcm.edu	hg19	3	122631890	122631890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	SEMA5B	NM_001256347	exon18	c.T2687C	p.L896P	CTGCGCAGGAGGA	.	31.0	16.0	48.0	0.0	.	303	.	.	Atlas-SNP
EPHB1	2047	hgsc.bcm.edu	hg19	3	134873108	134873108	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	EPHB1_ENST00000398015,colon,carcinoma,0,2	EPHB1	NM_004441	exon6	c.A1412G	p.Y471C	TCCGGTACTATGA	.	70.0	27.0	89.0	0.0	.	519	.	.	Atlas-SNP
DHX36	170506	hgsc.bcm.edu	hg19	3	154032979	154032979	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	DHX36	NM_020865	exon3	c.A459T	p.K153N	AAACATTTTTTTT	.	154.0	7.0	175.0	0.0	.	98	.	.	Atlas-SNP
SI	6476	hgsc.bcm.edu	hg19	3	164776811	164776811	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	SI	NM_001041	exon12	c.G1338A	p.R446R	GTTTCCCCTCTCA	.	124.0	8.0	123.0	0.0	.	500	.	.	Atlas-SNP
RPL35A	6165	hgsc.bcm.edu	hg19	3	197678059	197678059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	RPL35A	NM_000996	exon3	c.A41G	p.Y14C	CTGGCTATAAGCG	.	59.0	23.0	59.0	0.0	.	9	.	.	Atlas-SNP
GRSF1	2926	hgsc.bcm.edu	hg19	4	71705447	71705447	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	GRSF1	NM_002092	exon1	c.A98C	p.Y33S	GCGGAGTAGAAGG	.	6.0	6.0	2.0	0.0	.	35	.	.	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123179993	123179993	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	KIAA1109	NM_015312	exon40	c.A6757G	p.I2253V	TTAAAAATAAAGG	.	70.0	28.0	80.0	0.0	.	424	.	.	Atlas-SNP
RASA1	5921	hgsc.bcm.edu	hg19	5	86633866	86633866	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	RASA1	NM_002890	exon5	c.A975G	p.T325T	AAGAACAGATGAA	.	314.0	108.0	394.0	0.0	.	213	.	.	Atlas-SNP
RASA1	5921	hgsc.bcm.edu	hg19	5	86633867	86633867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	RASA1_ENST00000456692,NS,carcinoma,0,2	RASA1	NM_002890	exon5	c.G976A	p.D326N	AGAACAGATGAAC	.	316.0	107.0	391.0	0.0	.	213	.	.	Atlas-SNP
CHD1	1105	hgsc.bcm.edu	hg19	5	98262046	98262046	+	Silent	SNP	T	T	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	CHD1	NM_001270	exon1	c.A45C	p.G15G	TGATTCTCCACTA	.	61.0	21.0	75.0	0.0	.	137	.	.	Atlas-SNP
CDC25C	995	hgsc.bcm.edu	hg19	5	137665271	137665271	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	CDC25C	NM_001790	exon3	c.T260A	p.L87H	GTGGTAAGCTGAG	.	89.0	23.0	70.0	0.0	.	37	.	.	Atlas-SNP
NMUR2	56923	hgsc.bcm.edu	hg19	5	151784554	151784554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	NMUR2,NS,haematopoietic_neoplasm,0,1	NMUR2	NM_020167	exon1	c.C121T	p.R41C	GGCTGCGCCGAGG	.	161.0	71.0	157.0	0.0	.	111	.	.	Atlas-SNP
ATXN1	6310	hgsc.bcm.edu	hg19	6	16327864	16327864	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.,1	ATXN1	NM_001128164	exon7	c.C678G	p.H226Q	GCTGAGGTGCTGC	.	48.0	4.0	63.0	0.0	.	117	.	.	Atlas-SNP
PPP1R18	170954	hgsc.bcm.edu	hg19	6	30652197	30652197	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	.	NM_001134870	exon2	c.A1599T	p.R533S	GTGGTGTCTTTCG	.	93.0	52.0	115.0	0.0	.	.	.	.	Atlas-SNP
VEGFA	7422	hgsc.bcm.edu	hg19	6	43746274	43746274	+	Splice_Site	SNP	G	G	C	rs113966402	alternate_allele	TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	VEGFA	NM_001171625	exon4	c.392+1G>C	.	ATGCAGGTGAGGA	.	77.0	5.0	99.0	0.0	.	21	.	.	Atlas-SNP
MAP3K7	6885	hgsc.bcm.edu	hg19	6	91229026	91229026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	MAP3K7	NM_145331	exon15	c.C1475T	p.S492L	TTATCTGATCCAT	.	90.0	44.0	103.0	0.0	.	100	.	.	Atlas-SNP
TRRAP	8295	hgsc.bcm.edu	hg19	7	98586442	98586442	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	TRRAP	NM_001244580	exon62	c.G9456T	p.L3152L	TGTGCTGGTGAAA	.	50.0	16.0	55.0	0.0	.	863	.	.	Atlas-SNP
ACHE	43	hgsc.bcm.edu	hg19	7	100491024	100491024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	ACHE	NM_000665	exon2	c.G830T	p.R277L	GCCCTGCGACGGG	.	41.0	17.0	45.0	0.0	.	80	.	.	Atlas-SNP
LHFPL3	375612	hgsc.bcm.edu	hg19	7	103969251	103969251	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	LHFPL3,NS,carcinoma,0,1	LHFPL3	NM_199000	exon1	c.C24T	p.A8A	CGCTGCCGCCGCC	.	46.0	3.0	43.0	0.0	.	24	.	.	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	hg19	7	151874011	151874011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	MLL3	NM_170606	exon38	c.G8527A	p.D2843N	TCTCATCATTTTT	.	74.0	36.0	75.0	0.0	.	1564	.	.	Atlas-SNP
PABPC1	26986	hgsc.bcm.edu	hg19	8	101721828	101721828	+	Silent	SNP	A	A	C	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	PABPC1	NM_002568	exon8	c.T1104G	p.A368A	GCGCTGAGCTAAA	.	222.0	158.0	87.0	0.0	.	76	.	.	Atlas-SNP
KLF10	7071	hgsc.bcm.edu	hg19	8	103663642	103663642	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	KLF10	NM_005655	exon3	c.G918T	p.V306V	CATGAACACAACA	.	284.0	86.0	123.0	0.0	.	44	.	.	Atlas-SNP
BNC2	54796	hgsc.bcm.edu	hg19	9	16436154	16436154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	BNC2	NM_017637	exon6	c.G2038A	p.E680K	TCTCCTCTTGGGA	.	51.0	21.0	103.0	0.0	.	166	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79252403	79252403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	PRUNE2	NM_015225	exon14	c.G8894A	p.G2965D	GTTGCACCATTCA	.	70.0	20.0	69.0	0.0	.	331	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79322011	79322011	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	PRUNE2	NM_015225	exon8	c.T5179C	p.L1727L	TGACCAAGAACTT	.	111.0	7.0	75.0	0.0	.	331	.	.	Atlas-SNP
VIM	7431	hgsc.bcm.edu	hg19	10	17271486	17271486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	VIM	NM_003380	exon2	c.G65T	p.S22I	CCGCGAGCCGGCC	.	85.0	35.0	105.0	0.0	.	71	.	.	Atlas-SNP
THNSL1	79896	hgsc.bcm.edu	hg19	10	25312254	25312254	+	Silent	SNP	A	A	C	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	THNSL1	NM_024838	exon3	c.A102C	p.S34S	TCTTTCAAGAACC	.	143.0	63.0	153.0	0.0	.	70	.	.	Atlas-SNP
TBC1D12	23232	hgsc.bcm.edu	hg19	10	96269915	96269915	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	TBC1D12	NM_015188	exon8	c.A1668T	p.P556P	ATTTCCATCTCTC	.	98.0	47.0	105.0	0.0	.	51	.	.	Atlas-SNP
BTRC	8945	hgsc.bcm.edu	hg19	10	103285923	103285923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	BTRC,colon,carcinoma,0,2	BTRC	NM_033637	exon6	c.C710A	p.S237Y	CAGATTCTCTGTG	.	122.0	7.0	124.0	0.0	.	64	.	.	Atlas-SNP
PLEKHS1	79949	hgsc.bcm.edu	hg19	10	115536900	115536900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	PLEKHS1	NM_182601	exon11	c.G1049A	p.G350D	GGGAAGGCCCCCC	.	59.0	10.0	74.0	0.0	.	19	.	.	Atlas-SNP
CACUL1	143384	hgsc.bcm.edu	hg19	10	120450798	120450798	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	.	NM_153810	exon7	c.T1004G	p.L335R	TGTATAAGTTCTC	.	75.0	21.0	72.0	0.0	.	.	.	.	Atlas-SNP
PLEKHA1	59338	hgsc.bcm.edu	hg19	10	124172538	124172538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	PLEKHA1	NM_021622	exon6	c.G445A	p.V149I	GGTGGCGTACCCA	.	111.0	5.0	140.0	0.0	.	33	.	.	Atlas-SNP
DHX32	55760	hgsc.bcm.edu	hg19	10	127529548	127529548	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	DHX32	NM_018180	exon8	c.C1561A	p.H521N	GCACATGTGAAAA	.	73.0	27.0	86.0	0.0	.	67	.	.	Atlas-SNP
DHX32	55760	hgsc.bcm.edu	hg19	10	127529549	127529549	+	Silent	SNP	T	T	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	DHX32	NM_018180	exon8	c.A1560C	p.S520S	CACATGTGAAAAG	.	73.0	28.0	87.0	0.0	.	67	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1094728	1094728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	MUC2	NM_002457	exon32	c.C5804T	p.T1935M	TGCAGACGACCAC	.	78.0	30.0	91.0	0.0	.	614	.	.	Atlas-SNP
OR52N5	390075	hgsc.bcm.edu	hg19	11	5799571	5799571	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	OR52N5	NM_001001922	exon1	c.C294T	p.L98L	TTCTTTGAGACTG	.	183.0	14.0	189.0	0.0	.	58	.	.	Atlas-SNP
PPP1R32	220004	hgsc.bcm.edu	hg19	11	61252246	61252246	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	.	NM_001170753	exon5	c.G468C	p.Q156H	CCACCAGCAGCAG	.	97.0	35.0	117.0	0.0	.	.	.	.	Atlas-SNP
CCND1	595	hgsc.bcm.edu	hg19	11	69466001	69466001	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	CCND1	NM_053056	exon5	c.A839T	p.E280V	AGGAGGAGGTGGA	.	144.0	6.0	186.0	0.0	.	107	.	.	Atlas-SNP
C2CD3	26005	hgsc.bcm.edu	hg19	11	73817446	73817446	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	C2CD3	NM_015531	exon13	c.A2055C	p.E685D	ACCATTTTCTTGT	.	169.0	68.0	189.0	0.0	.	288	.	.	Atlas-SNP
GUCY2C	2984	hgsc.bcm.edu	hg19	12	14778727	14778727	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	GUCY2C	NM_004963	exon21	c.A2372C	p.D791A	GCCCTGTCCCTCT	.	85.0	4.0	119.0	0.0	.	126	.	.	Atlas-SNP
ITGA7	3679	hgsc.bcm.edu	hg19	12	56081819	56081819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	ITGA7	NM_001144996	exon24	c.T3131C	p.V1044A	AGGATGACCCACC	.	134.0	39.0	146.0	0.0	.	194	.	.	Atlas-SNP
ITGA7	3679	hgsc.bcm.edu	hg19	12	56081826	56081826	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	ITGA7	NM_001144996	exon24	c.T3124C	p.W1042R	CCCACCAGGGCAC	.	142.0	43.0	143.0	0.0	.	194	.	.	Atlas-SNP
CCT2	10576	hgsc.bcm.edu	hg19	12	69992133	69992133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	CCT2	NM_006431	exon14	c.A1367G	p.Y456C	CAGGCTATGACAG	.	371.0	111.0	322.0	0.0	.	49	.	.	Atlas-SNP
LRRIQ1	84125	hgsc.bcm.edu	hg19	12	85441230	85441230	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	LRRIQ1	NM_001079910	exon6	c.A660C	p.K220N	GAAGAAATTAGAG	.	633.0	159.0	486.0	1.0	.	512	.	.	Atlas-SNP
SPATA13	221178	hgsc.bcm.edu	hg19	13	24864943	24864943	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	SPATA13	NM_001166271	exon9	c.C3001G	p.L1001V	GGGTTCCTGCTCA	.	140.0	60.0	192.0	0.0	.	92	.	.	Atlas-SNP
DHRS4L1	728635	hgsc.bcm.edu	hg19	14	24517969	24517969	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	.	NM_001082488	exon8	c.T624A	p.I208I	GAACATTAGGGTG	.	523.0	187.0	622.0	0.0	.	.	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105407215	105407215	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	AHNAK2	NM_138420	exon7	c.G14573T	p.G4858V	ACCTGACCAAGAG	.	96.0	28.0	132.0	0.0	.	719	.	.	Atlas-SNP
NOP10	55505	hgsc.bcm.edu	hg19	15	34634207	34634207	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	NOP10,colon,carcinoma,0,1	NOP10	NM_018648	exon2	c.A157G	p.K53E	GCACCTTGAAGCG	.	91.0	40.0	113.0	0.0	.	8	.	.	Atlas-SNP
SH3GL3	6457	hgsc.bcm.edu	hg19	15	84237305	84237305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	SH3GL3	NM_003027	exon4	c.T212C	p.L71P	GAATGCTGAACAC	.	68.0	29.0	81.0	0.0	.	91	.	.	Atlas-SNP
AKAP13	11214	hgsc.bcm.edu	hg19	15	86198736	86198736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	AKAP13	NM_007200	exon11	c.G4463T	p.G1488V	CTCATGGCAGTGA	.	93.0	4.0	84.0	0.0	.	394	.	.	Atlas-SNP
NTRK3	4916	hgsc.bcm.edu	hg19	15	88670420	88670420	+	Silent	SNP	G	G	C	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	NTRK3_ENST00000360948,NS,haematopoietic_neoplasm,0,3	NTRK3	NM_001012338	exon12	c.C1266G	p.T422T	TTTGTGGGTCACA	.	171.0	79.0	225.0	0.0	.	587	.	.	Atlas-SNP
CLDN9	9080	hgsc.bcm.edu	hg19	16	3063428	3063428	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	CLDN9,NS,carcinoma,0,1	CLDN9	NM_020982	exon1	c.T65C	p.L22P	GGACCCTGGTGTC	.	55.0	3.0	78.0	0.0	.	33	.	.	Atlas-SNP
LOC81691	0	hgsc.bcm.edu	hg19	16	20857589	20857589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	LOC81691	NM_030941	exon19	c.G2171T	p.R724L	GGAGCCGGAAGAT	.	100.0	4.0	125.0	0.0	.	41	.	.	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	hg19	16	89337284	89337284	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	ANKRD11	NM_001256183	exon12	c.A7747T	p.N2583Y	GGGCGTTGAAACG	.	68.0	33.0	85.0	0.0	.	195	.	.	Atlas-SNP
NCOR1	9611	hgsc.bcm.edu	hg19	17	15965046	15965046	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	NCOR1	NM_006311	exon37	c.A5550T	p.E1850D	ATTTTCTTCTAAC	.	112.0	40.0	107.0	0.0	.	240	.	.	Atlas-SNP
SUPT6H	6830	hgsc.bcm.edu	hg19	17	27027983	27027983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	SUPT6H	NM_003170	exon36	c.C4831T	p.P1611S	CAGCAGCCAGTGG	.	135.0	43.0	106.0	0.0	.	165	.	.	Atlas-SNP
COL1A1	1277	hgsc.bcm.edu	hg19	17	48266329	48266329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	COL1A1	NM_000088	exon41	c.C2980A	p.R994S	GACCACGTTCACC	.	112.0	38.0	155.0	0.0	.	158	.	.	Atlas-SNP
CARD14	79092	hgsc.bcm.edu	hg19	17	78164640	78164640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	CARD14	NM_024110	exon7	c.G1031A	p.R344K	TCTACAGGGAGAA	.	66.0	17.0	87.0	0.0	.	98	.	.	Atlas-SNP
OSBPL1A	114876	hgsc.bcm.edu	hg19	18	21758132	21758132	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	OSBPL1A	NM_080597	exon21	c.C1938A	p.S646S	CTGTTCGGAGATG	.	94.0	36.0	107.0	0.0	.	94	.	.	Atlas-SNP
CCDC102B	79839	hgsc.bcm.edu	hg19	18	66678323	66678323	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	CCDC102B	NM_001093729	exon9	c.C1416T	p.L472L	GGGACTCAATCAA	.	329.0	22.0	263.0	0.0	.	92	.	.	Atlas-SNP
MYO1F	4542	hgsc.bcm.edu	hg19	19	8587279	8587279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	MYO1F	NM_012335	exon27	c.A3202G	p.I1068V	TCTCAATGACCTC	.	43.0	23.0	45.0	0.0	.	128	.	.	Atlas-SNP
HSPB6	126393	hgsc.bcm.edu	hg19	19	36247733	36247733	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	HSPB6	NM_144617	exon1	c.C177T	p.S59S	CGCCACGCTGGGT	.	79.0	5.0	73.0	0.0	.	1	.	.	Atlas-SNP
PSMD8	5714	hgsc.bcm.edu	hg19	19	38867017	38867017	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	PSMD8	NM_002812	exon3	c.A459T	p.Q153H	GGCCCAATGGAGC	.	93.0	43.0	125.0	0.0	.	31	.	.	Atlas-SNP
PRKD2	25865	hgsc.bcm.edu	hg19	19	47200429	47200429	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	PRKD2	NM_016457	exon9	c.C1302T	p.T434T	TCTGTTGGTCGTG	.	60.0	29.0	83.0	0.0	.	94	.	.	Atlas-SNP
ZNF808	388558	hgsc.bcm.edu	hg19	19	53056997	53056997	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	ZNF808	NM_001039886	exon5	c.C828G	p.C276W	TGCATGCCATCGT	.	121.0	40.0	149.0	0.0	.	81	.	.	Atlas-SNP
ZNF83	55769	hgsc.bcm.edu	hg19	19	53117612	53117612	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	ZNF83	NM_018300	exon3	c.A206C	p.H69P	TATGTATGAGAAA	.	137.0	54.0	137.0	0.0	.	73	.	.	Atlas-SNP
CENPB	1059	hgsc.bcm.edu	hg19	20	3765921	3765921	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	CENPB	NM_001810	exon1	c.G1210C	p.E404Q	CTCCCTCACTCTT	.	34.0	12.0	47.0	0.0	.	24	.	.	Atlas-SNP
MKKS	8195	hgsc.bcm.edu	hg19	20	10393869	10393869	+	Silent	SNP	A	A	C	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	MKKS	NM_170784	exon3	c.T294G	p.L98L	GCAGCAAAGAATA	.	84.0	30.0	113.0	0.0	.	35	.	.	Atlas-SNP
NCOA6	23054	hgsc.bcm.edu	hg19	20	33345769	33345769	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	NCOA6	NM_014071	exon7	c.A782T	p.Q261L	TGCTGCTGCAGCT	.	78.0	4.0	71.0	0.0	.	219	.	.	Atlas-SNP
TBC1D10A	83874	hgsc.bcm.edu	hg19	22	30690978	30690978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	TBC1D10A	NM_001204240	exon5	c.G612T	p.Q204H	CTGGGCCTGGCAG	.	103.0	24.0	102.0	0.0	.	49	.	.	Atlas-SNP
HMOX1	3162	hgsc.bcm.edu	hg19	22	35782898	35782898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	HMOX1	NM_002133	exon3	c.G365T	p.G122V	AGGTGGGGCGCAC	.	77.0	7.0	95.0	0.0	.	32	.	.	Atlas-SNP
TOB2	10766	hgsc.bcm.edu	hg19	22	41833266	41833266	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	TOB2	NM_016272	exon2	c.T84C	p.F28F	CTCCCCAAACAGG	.	51.0	20.0	110.0	0.0	.	30	.	.	Atlas-SNP
MXRA5	25878	hgsc.bcm.edu	hg19	X	3240425	3240425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	MXRA5	NM_015419	exon5	c.G3301A	p.G1101S	TTATACCCAGTGT	.	60.0	4.0	82.0	0.0	.	815	.	.	Atlas-SNP
THOC2	57187	hgsc.bcm.edu	hg19	X	122772802	122772802	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	THOC2	NM_001081550	exon17	c.A1823C	p.N608T	TCATAATTCAGTG	.	147.0	113.0	192.0	0.0	.	310	.	.	Atlas-SNP
SAR1B	51128	hgsc.bcm.edu	hg19	5	133942642	133942642	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	SAR1B	NM_001033503	exon8	c.596delA	p.X199Y	.	.	96.0	45.0	114.0	0.0	.	19	.	.	Atlas-INDEL
EGFR	1956	hgsc.bcm.edu	hg19	7	55248998	55248999	+	In_Frame_Ins	INS	-	-	TGGCCAGCG	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	EGFR,caecum,carcinoma,0,1	EGFR	NM_005228	exon20	c.2296_2297insTGGCCAGCG	p.M766delinsMASV	.	.	81.0	14.0	105.0	0.0	.	20426	.	.	Atlas-INDEL
FOXN2	3344	hgsc.bcm.edu	hg19	2	48602157	48602167	+	Frame_Shift_Del	DEL	TCTTTAGCCAC	TCTTTAGCCAC	-	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	TCTTTAGCCAC	TCTTTAGCCAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	FOXN2	NM_002158	exon7	c.870_880del	p.290_294del	.	.	116.0	39.0	154.0	0.0	.	39	.	.	Atlas-INDEL
CABIN1	23523	hgsc.bcm.edu	hg19	22	24515513	24515539	+	In_Frame_Del	DEL	CCCCAGGGGCTGCCGGCTGGTGCTGAG	CCCCAGGGGCTGCCGGCTGGTGCTGAG	-	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	CCCCAGGGGCTGCCGGCTGGTGCTGAG	CCCCAGGGGCTGCCGGCTGGTGCTGAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	CABIN1	NM_001199281	exon28	c.4479_4505del	p.1493_1502del	.	.	62.0	12.0	91.0	0.0	.	153	.	.	Atlas-INDEL
SOCS3	9021	hgsc.bcm.edu	hg19	17	76354878	76354878	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	SOCS3	NM_003955	exon2	c.300delC	p.G100fs	.	.	109.0	37.0	118.0	0.0	.	16	.	.	Atlas-INDEL
MACF1	23499	hgsc.bcm.edu	hg19	1	39824861	39824862	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	MACF1	NM_012090	exon43	c.5983_5984insA	p.Q1995fs	.	.	399.0	51.0	484.0	0.0	.	909	.	.	Atlas-INDEL
RFTN1	23180	hgsc.bcm.edu	hg19	3	16368341	16368341	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AACY-01A-11D-A40R-10	TCGA-DD-AACY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b7cb238c-7b7f-41e9-acc4-2173a66c4f20	96563036-f486-49db-9442-d334ebc044a9	.	RFTN1	NM_015150	exon8	c.1190delT	p.L397fs	.	.	28.0	17.0	47.0	0.0	.	79	.	.	Atlas-INDEL
