Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
MST1L	11223	hgsc.bcm.edu	hg19	1	17085380	17085380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	.	NM_001271733	exon10	c.C1311A	p.D437E	ATCTGGGTCTGGC	.	315.0	26.0	235.0	0.0	.	.	.	.	Atlas-SNP
MFAP2	4237	hgsc.bcm.edu	hg19	1	17303683	17303683	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	MFAP2	NM_017459	exon3	c.G48T	p.L16L	CTGAGCCAGCAAG	.	129.0	55.0	100.0	0.0	.	8	.	.	Atlas-SNP
MINOS1	440574	hgsc.bcm.edu	hg19	1	19950009	19950009	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	.	NM_001032363	exon3	c.G154T	p.G52X	GGATTAGGAATGG	.	46.0	11.0	52.0	0.0	.	.	.	.	Atlas-SNP
ZBTB40	9923	hgsc.bcm.edu	hg19	1	22837792	22837792	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ZBTB40	NM_001083621	exon11	c.A1954T	p.K652X	GTCCACAAATCTT	.	116.0	23.0	107.0	0.0	.	87	.	.	Atlas-SNP
RUNX3	864	hgsc.bcm.edu	hg19	1	25229122	25229122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	RUNX3	NM_001031680	exon6	c.C781A	p.Q261K	CAAACTGGCGGGG	.	154.0	58.0	131.0	0.0	.	72	.	.	Atlas-SNP
RUNX3	864	hgsc.bcm.edu	hg19	1	25229123	25229123	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	RUNX3	NM_001031680	exon6	c.C780A	p.R260R	AAACTGGCGGGGG	.	153.0	58.0	131.0	0.0	.	72	.	.	Atlas-SNP
USP24	23358	hgsc.bcm.edu	hg19	1	55609866	55609866	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	USP24	NM_015306	exon21	c.A2373T	p.L791F	TTTAAATAAGTTA	.	326.0	117.0	262.0	0.0	.	323	.	.	Atlas-SNP
KANK4	163782	hgsc.bcm.edu	hg19	1	62734068	62734068	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	KANK4	NM_181712	exon5	c.A2122T	p.K708X	CATCTTTGACATG	.	50.0	18.0	45.0	0.0	.	135	.	.	Atlas-SNP
HFM1	164045	hgsc.bcm.edu	hg19	1	91784922	91784922	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	HFM1	NM_001017975	exon24	c.A2608G	p.I870V	TGGGAATGCATCC	.	228.0	56.0	178.0	0.0	.	188	.	.	Atlas-SNP
SYCP1	6847	hgsc.bcm.edu	hg19	1	115527442	115527442	+	Missense_Mutation	SNP	T	T	A	rs200809568	by1000genomes;alternate_allele	TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	SYCP1	NM_003176	exon30	c.T2656A	p.F886I	ATGGCCTTTGAAT	.	425.0	78.0	375.0	0.0	.	149	.	T|1.000;G|0.000	Atlas-SNP
NHLH2	4808	hgsc.bcm.edu	hg19	1	116380919	116380919	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	NHLH2	NM_001111061	exon2	c.C75T	p.G25G	CGTGCCGCCCAGG	.	121.0	39.0	78.0	0.0	.	8	.	.	Atlas-SNP
OR10K1	391109	hgsc.bcm.edu	hg19	1	158435707	158435707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	OR10K1	NM_001004473	exon1	c.G356T	p.G119V	CCATGGGCTATGA	.	149.0	27.0	112.0	0.0	.	80	.	.	Atlas-SNP
PTPN14	5784	hgsc.bcm.edu	hg19	1	214557127	214557127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	PTPN14,NS,carcinoma,0,1	PTPN14	NM_005401	exon13	c.C2071A	p.Q691K	GATACTGAGGGAG	.	80.0	18.0	51.0	1.0	.	168	.	.	Atlas-SNP
ESRRG	2104	hgsc.bcm.edu	hg19	1	216741353	216741353	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ESRRG	NM_001243518	exon5	c.T692A	p.L231Q	TGAACCAGCTGAG	.	105.0	8.0	48.0	0.0	.	111	.	.	Atlas-SNP
AHCTF1	25909	hgsc.bcm.edu	hg19	1	247016483	247016483	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	AHCTF1	NM_015446	exon32	c.A4500T	p.E1500D	TTCTACTTCATGA	.	624.0	71.0	438.0	0.0	.	187	.	.	Atlas-SNP
OR2T4	127074	hgsc.bcm.edu	hg19	1	248525837	248525837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	OR2T4	NM_001004696	exon1	c.C955A	p.P319T	GTGAACCCTTTAA	.	639.0	57.0	480.0	0.0	.	126	.	.	Atlas-SNP
ADCY3	109	hgsc.bcm.edu	hg19	2	25059804	25059804	+	Silent	SNP	G	G	C	rs372998415	alternate_allele	TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ADCY3	NM_004036	exon8	c.C1644G	p.P548P	CTCCTCGGGCTTC	.	99.0	7.0	53.0	0.0	.	114	.	.	Atlas-SNP
DNMT3A	1788	hgsc.bcm.edu	hg19	2	25505281	25505281	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	DNMT3A	NM_175630	exon4	c.T477C	p.S159S	CCCAGAAGAGGCT	.	79.0	8.0	105.0	0.0	.	1807	.	.	Atlas-SNP
PLEKHH2	130271	hgsc.bcm.edu	hg19	2	43924355	43924355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	PLEKHH2,colon,carcinoma,0,1	PLEKHH2	NM_172069	exon7	c.C548T	p.S183L	AGCTTTCGGAAGG	.	102.0	8.0	103.0	0.0	.	156	.	.	Atlas-SNP
ADD2	119	hgsc.bcm.edu	hg19	2	70910836	70910836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ADD2	NM_001185055	exon9	c.C1060T	p.R354W	GGGGCCGGTGCTT	.	249.0	63.0	227.0	0.0	.	261	.	.	Atlas-SNP
DYSF	8291	hgsc.bcm.edu	hg19	2	71795093	71795093	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	DYSF	NM_001130982	exon26	c.A2620T	p.K874X	ATGGAGAAGGTGC	.	167.0	35.0	125.0	0.0	.	536	.	.	Atlas-SNP
CYP26B1	56603	hgsc.bcm.edu	hg19	2	72371128	72371128	+	Missense_Mutation	SNP	T	T	C	rs200324765	by1000genomes;alternate_allele	TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	CYP26B1	NM_019885	exon2	c.A419G	p.N140S	CGCTTGTTGCGGT	.	98.0	4.0	74.0	0.0	.	73	.	T|1.000;A|0.000	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613036	73613036	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ALMS1	NM_015120	exon1	c.G40C	p.E14Q	CTGGAGGAGGAGG	.	289.0	27.0	150.0	0.0	.	384	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613037	73613037	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ALMS1	NM_015120	exon1	c.A41T	p.E14V	TGGAGGAGGAGGA	.	292.0	30.0	149.0	0.0	.	384	.	.	Atlas-SNP
SNRNP200	23020	hgsc.bcm.edu	hg19	2	96949333	96949333	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	SNRNP200	NM_014014	exon33	c.A4703C	p.Q1568P	CGGGTCTGCTTGC	.	84.0	27.0	71.0	0.0	.	195	.	.	Atlas-SNP
FER1L5	90342	hgsc.bcm.edu	hg19	2	97368053	97368053	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	FER1L5	NM_001113382	exon46	c.C5278T	p.R1760X	GAGCTGCGATGCA	.	335.0	84.0	199.0	0.0	.	113	.	.	Atlas-SNP
MARCO	8685	hgsc.bcm.edu	hg19	2	119739022	119739022	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	MARCO	NM_006770	exon9	c.G804T	p.G268G	TGCAGGGGTCATG	.	184.0	38.0	133.0	0.0	.	120	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179438250	179438250	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	TTN	NM_001267550	exon326	c.T72609A	p.Y24203X	CACTCCATATTTA	.	148.0	32.0	115.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179502130	179502130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	TTN	NM_001267550	exon224	c.G40893T	p.K13631N	CTCTTCCTTAGGT	.	78.0	11.0	59.0	0.0	.	18412	.	.	Atlas-SNP
NIF3L1	60491	hgsc.bcm.edu	hg19	2	201761875	201761875	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	NIF3L1_ENST00000409020,colon,carcinoma,0,2	NIF3L1	NM_001136039	exon5	c.G803C	p.R268P	TTGATCGAATAAA	.	165.0	46.0	113.0	0.0	.	51	.	.	Atlas-SNP
LANCL1	10314	hgsc.bcm.edu	hg19	2	211300146	211300146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	LANCL1	NM_001136574	exon9	c.G1088A	p.C363Y	GTTCTGCATCCAT	.	159.0	42.0	119.0	0.0	.	23	.	.	Atlas-SNP
TRANK1	9881	hgsc.bcm.edu	hg19	3	36898772	36898772	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	TRANK1	NM_014831	exon12	c.A2309T	p.Q770L	TCATCCTGATCAT	.	97.0	15.0	77.0	0.0	.	398	.	.	Atlas-SNP
SLC9C1	285335	hgsc.bcm.edu	hg19	3	111962868	111962868	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	.	NM_183061	exon11	c.T1253G	p.I418S	GGCAAAATAAATC	.	346.0	100.0	274.0	0.0	.	.	.	.	Atlas-SNP
PIK3R4	30849	hgsc.bcm.edu	hg19	3	130424491	130424491	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	PIK3R4	NM_014602	exon12	c.A2846T	p.Q949L	TTTTGCTGGATGA	.	171.0	67.0	140.0	0.0	.	145	.	.	Atlas-SNP
MBNL1	4154	hgsc.bcm.edu	hg19	3	152132806	152132806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	MBNL1_ENST00000282488,colon,carcinoma,0,2	MBNL1	NM_207292	exon3	c.G251A	p.R84H	ATGGACGCAATAA	.	195.0	70.0	142.0	0.0	.	100	.	.	Atlas-SNP
ATP13A5	344905	hgsc.bcm.edu	hg19	3	193081052	193081052	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ATP13A5	NM_198505	exon3	c.C357G	p.N119K	GGCTTGGTTTATG	.	146.0	43.0	117.0	0.0	.	171	.	.	Atlas-SNP
FAM157A	728262	hgsc.bcm.edu	hg19	3	197880167	197880167	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	FAM157A	NM_001145248	exon2	c.G246A	p.Q82Q	GCAGCAGCAGCAA	.	592.0	29.0	467.0	0.0	.	4	.	.	Atlas-SNP
PROM1	8842	hgsc.bcm.edu	hg19	4	16025980	16025980	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	PROM1	NM_006017	exon6	c.A632T	p.Q211L	TTGATTTGCTGAA	.	158.0	62.0	124.0	0.0	.	91	.	.	Atlas-SNP
SLC34A2	10568	hgsc.bcm.edu	hg19	4	25667799	25667799	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	SLC34A2	NM_006424	exon5	c.T429A	p.P143P	CAACCCTTTGTTG	.	73.0	14.0	51.0	0.0	.	93	.	.	Atlas-SNP
SEL1L3	23231	hgsc.bcm.edu	hg19	4	25819867	25819867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	SEL1L3	NM_015187	exon9	c.G1457A	p.R486H	TACCTGCGCTGGA	.	154.0	37.0	128.0	0.0	.	62	.	.	Atlas-SNP
CWH43	80157	hgsc.bcm.edu	hg19	4	48996766	48996766	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	CWH43	NM_025087	exon5	c.A642G	p.G214G	TTTTGGAGAAGTC	.	222.0	50.0	150.0	0.0	.	101	.	.	Atlas-SNP
RUFY3	22902	hgsc.bcm.edu	hg19	4	71655272	71655272	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	RUFY3	NM_001130709	exon12	c.A1480T	p.N494Y	AAGACTAATCAGA	.	253.0	51.0	216.0	0.0	.	61	.	.	Atlas-SNP
COL25A1	84570	hgsc.bcm.edu	hg19	4	109765684	109765684	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	COL25A1	NM_198721	exon29	c.T1620A	p.P540P	GGGGCCAGGTGGG	.	154.0	27.0	134.0	0.0	.	178	.	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	hg19	4	114158756	114158756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ANK2	NM_001148	exon7	c.T671C	p.M224T	TTCAGATGATGGT	.	98.0	22.0	99.0	0.0	.	576	.	.	Atlas-SNP
FSTL5	56884	hgsc.bcm.edu	hg19	4	162680644	162680644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	FSTL5	NM_020116	exon6	c.T646C	p.C216R	AAGTACAATCAAA	.	493.0	104.0	493.0	0.0	.	207	.	.	Atlas-SNP
CLCN3	1182	hgsc.bcm.edu	hg19	4	170613454	170613454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	CLCN3	NM_001243372	exon7	c.G919A	p.E307K	ACAAACGAAGCTA	.	188.0	46.0	236.0	0.0	.	85	.	.	Atlas-SNP
ADCY2	108	hgsc.bcm.edu	hg19	5	7520950	7520950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ADCY2	NM_020546	exon3	c.A508G	p.T170A	TCCCACACCATCG	.	113.0	11.0	75.0	0.0	.	337	.	.	Atlas-SNP
FAM134B	54463	hgsc.bcm.edu	hg19	5	16617067	16617067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	FAM134B	NM_001034850	exon1	c.C14A	p.A5E	GGAGGCGCCGGGC	.	295.0	77.0	176.0	0.0	.	72	.	.	Atlas-SNP
ITGA2	3673	hgsc.bcm.edu	hg19	5	52371063	52371063	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ITGA2	NM_002203	exon23	c.A2754G	p.E918E	CCAAGAAGAAAAC	.	204.0	43.0	150.0	0.0	.	211	.	.	Atlas-SNP
MAST4	375449	hgsc.bcm.edu	hg19	5	66391425	66391425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	MAST4	NM_001164664	exon7	c.G834T	p.R278S	CAATAGGACTGAT	.	124.0	37.0	93.0	0.0	.	218	.	.	Atlas-SNP
NAIP	4671	hgsc.bcm.edu	hg19	5	70308629	70308629	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	NAIP	NM_004536	exon4	c.A114T	p.L38L	TTCTTCTAGTTCC	.	173.0	29.0	148.0	0.0	.	38	.	.	Atlas-SNP
SPATA9	83890	hgsc.bcm.edu	hg19	5	94994511	94994511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	SPATA9	NM_031952	exon5	c.C581T	p.S194F	GGCTCAGAAAAGG	.	112.0	37.0	63.0	0.0	.	17	.	.	Atlas-SNP
ADAMTS19	171019	hgsc.bcm.edu	hg19	5	128887588	128887588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ADAMTS19	NM_133638	exon7	c.T1342C	p.C448R	GAACCATGTGATA	.	97.0	48.0	114.0	0.0	.	216	.	.	Atlas-SNP
CDC23	8697	hgsc.bcm.edu	hg19	5	137527198	137527198	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	CDC23	NM_004661	exon13	c.A1389G	p.G463G	CACATCTCCCACG	.	137.0	67.0	116.0	0.0	.	46	.	.	Atlas-SNP
PCDHB8	56128	hgsc.bcm.edu	hg19	5	140559603	140559603	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	PCDHB8	NM_019120	exon1	c.T1988A	p.L663Q	TGCTCCTGGTGGA	.	77.0	39.0	72.0	0.0	.	199	.	.	Atlas-SNP
PCDHGA12	26025	hgsc.bcm.edu	hg19	5	140810730	140810730	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	PCDHGA12	NM_032094	exon1	c.A404T	p.E135V	TTCGTGAAAGTGA	.	220.0	121.0	148.0	0.0	.	271	.	.	Atlas-SNP
SLC26A2	1836	hgsc.bcm.edu	hg19	5	149360924	149360924	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	SLC26A2	NM_000112	exon3	c.A1768T	p.I590L	TACTACATAAACA	.	91.0	48.0	64.0	0.0	.	48	.	.	Atlas-SNP
CNOT8	9337	hgsc.bcm.edu	hg19	5	154242880	154242880	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	CNOT8	NM_004779	exon2	c.A42C	p.E14D	CTGTGAAGTGTGG	.	189.0	10.0	137.0	0.0	.	20	.	.	Atlas-SNP
SGCD	6444	hgsc.bcm.edu	hg19	5	156184773	156184773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	SGCD	NM_172244	exon8	c.C757A	p.P253T	ACCCTTCCCATAA	.	442.0	44.0	366.0	0.0	.	52	.	.	Atlas-SNP
SOX30	11063	hgsc.bcm.edu	hg19	5	157065283	157065283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	SOX30	NM_178424	exon4	c.T1835C	p.F612S	TGATGAAAAGAGA	.	331.0	42.0	209.0	0.0	.	67	.	.	Atlas-SNP
ZNF391	346157	hgsc.bcm.edu	hg19	6	27368626	27368626	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ZNF391	NM_001076781	exon3	c.C477T	p.H159H	AACTCACACTGGA	.	206.0	82.0	164.0	0.0	.	90	.	.	Atlas-SNP
RPP21	79897	hgsc.bcm.edu	hg19	6	30314488	30314488	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	RPP21	NM_001199121	exon5	c.375-2A>T	.	TTACTCAGATTCC	.	131.0	51.0	106.0	0.0	.	11	.	.	Atlas-SNP
NOTCH4	4855	hgsc.bcm.edu	hg19	6	32180406	32180406	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	NOTCH4	NM_004557	exon18	c.2527-2A>T	.	AGAGTCTGAGGGG	.	128.0	20.0	112.0	0.0	.	201	.	.	Atlas-SNP
HLA-DQB1	3119	hgsc.bcm.edu	hg19	6	32632742	32632742	+	Missense_Mutation	SNP	C	C	T	rs281862072		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	HLA-DQB1	NM_002123	exon2	c.G212A	p.R71H	TCGAAGCGCGCGT	.	69.0	30.0	61.0	0.0	.	15	.	.	Atlas-SNP
C6orf141	135398	hgsc.bcm.edu	hg19	6	49518524	49518524	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	C6orf141	NM_001145652	exon1	c.A19T	p.R7W	TTTGCCAGGATGG	.	275.0	64.0	196.0	0.0	.	7	.	.	Atlas-SNP
GJB7	375519	hgsc.bcm.edu	hg19	6	87994409	87994409	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	GJB7	NM_198568	exon3	c.C222T	p.V74V	AAGTCTGACTTGG	.	204.0	56.0	144.0	0.0	.	28	.	.	Atlas-SNP
ROS1	6098	hgsc.bcm.edu	hg19	6	117609803	117609803	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ROS1	NM_002944	exon43	c.C6896G	p.S2299C	CCACAAGATTCAG	.	174.0	70.0	110.0	0.0	.	728	.	.	Atlas-SNP
ARID1B	57492	hgsc.bcm.edu	hg19	6	157505501	157505501	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ARID1B	NM_020732	exon13	c.A3482T	p.E1161V	GGGAGGAGCCCCC	.	252.0	48.0	187.0	0.0	.	320	.	.	Atlas-SNP
FRMD1	79981	hgsc.bcm.edu	hg19	6	168465694	168465694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	FRMD1	NM_024919	exon5	c.C505T	p.R169C	GCACGCGCTCCTT	.	54.0	7.0	30.0	0.0	.	52	.	.	Atlas-SNP
TBP	6908	hgsc.bcm.edu	hg19	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	TBP	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	93.0	7.0	66.0	0.0	.	58	.	.	Atlas-SNP
AMZ1	155185	hgsc.bcm.edu	hg19	7	2748314	2748314	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	AMZ1	NM_133463	exon4	c.T565A	p.W189R	GAGGCCTGGAGCT	.	43.0	16.0	37.0	0.0	.	41	.	.	Atlas-SNP
GNA12	2768	hgsc.bcm.edu	hg19	7	2834735	2834735	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	GNA12	NM_007353	exon2	c.C352G	p.P118A	GCCAAGGAATGCC	.	164.0	63.0	85.0	0.0	.	35	.	.	Atlas-SNP
CARD11	84433	hgsc.bcm.edu	hg19	7	2946324	2946324	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	CARD11	NM_032415	exon25	c.A3413T	p.K1138M	CCGATCTTGTCCT	.	188.0	63.0	98.0	0.0	.	339	.	.	Atlas-SNP
TWIST1	7291	hgsc.bcm.edu	hg19	7	19156809	19156809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	TWIST1	NM_000474	exon1	c.G136A	p.A46T	CGCCCGCGCTGCG	.	234.0	38.0	121.0	0.0	.	18	.	.	Atlas-SNP
BMPER	168667	hgsc.bcm.edu	hg19	7	34118743	34118743	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	BMPER,NS,carcinoma,0,1	BMPER	NM_133468	exon13	c.G1353A	p.A451A	CCGCGCGCCACAC	.	221.0	87.0	139.0	1.0	.	131	.	.	Atlas-SNP
POU6F2	11281	hgsc.bcm.edu	hg19	7	39379608	39379608	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	POU6F2	NM_007252	exon6	c.T879A	p.P293P	CAATCCTCTACAG	.	61.0	25.0	35.0	0.0	.	117	.	.	Atlas-SNP
ELN	2006	hgsc.bcm.edu	hg19	7	73442595	73442595	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ELN	NM_001081753	exon1	c.T78A	p.P26P	TCGGCCTGGAGGT	.	25.0	8.0	34.0	0.0	.	81	.	.	Atlas-SNP
HGF	3082	hgsc.bcm.edu	hg19	7	81355282	81355282	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	HGF	NM_000601	exon9	c.G1092C	p.W364C	AAAACACCAGGGT	.	167.0	16.0	163.0	0.0	.	171	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82580060	82580060	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	PCLO	NM_014510	exon6	c.A9844T	p.R3282W	CCTGCCTCATCAT	.	65.0	10.0	62.0	0.0	.	1506	.	.	Atlas-SNP
SEMA3E	9723	hgsc.bcm.edu	hg19	7	82997259	82997259	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	SEMA3E	NM_012431	exon17	c.A1971G	p.V657V	ATGCTCTACTGTC	.	94.0	20.0	101.0	0.0	.	125	.	.	Atlas-SNP
ZNF394	84124	hgsc.bcm.edu	hg19	7	99096398	99096398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ZNF394	NM_032164	exon2	c.C524T	p.A175V	CTCCGTGCTGGGT	.	63.0	16.0	66.0	0.0	.	48	.	.	Atlas-SNP
PODXL	5420	hgsc.bcm.edu	hg19	7	131241035	131241035	+	Silent	SNP	C	C	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	PODXL	NM_001018111	exon1	c.G84C	p.P28P	GGGCGACGGCGAC	.	74.0	6.0	52.0	0.0	.	53	.	.	Atlas-SNP
PLXNA4	91584	hgsc.bcm.edu	hg19	7	131872243	131872243	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	PLXNA4	NM_020911	exon15	c.T2980A	p.C994S	AGAGACAGGGCTG	.	69.0	14.0	63.0	0.0	.	873	.	.	Atlas-SNP
PDIA4	9601	hgsc.bcm.edu	hg19	7	148709035	148709035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	PDIA4	NM_004911	exon6	c.G882T	p.K294N	GACCTGCTTCAGG	.	73.0	5.0	63.0	0.0	.	57	.	.	Atlas-SNP
NOS3	4846	hgsc.bcm.edu	hg19	7	150698381	150698381	+	Missense_Mutation	SNP	G	G	T	rs145811781		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	NOS3	NM_001160111	exon10	c.G1296T	p.E432D	CCTGGAGAATGAG	.	49.0	12.0	46.0	0.0	.	131	.	G|1.000;T|0.000	Atlas-SNP
INSIG1	3638	hgsc.bcm.edu	hg19	7	155094075	155094075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	INSIG1	NM_005542	exon4	c.G652A	p.A218T	ACCATAGCTTTTC	.	104.0	37.0	106.0	0.0	.	20	.	.	Atlas-SNP
PIWIL2	55124	hgsc.bcm.edu	hg19	8	22137035	22137035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	PIWIL2	NM_001135721	exon2	c.G136A	p.G46S	CCTGCAGGCAGAG	.	97.0	19.0	99.0	0.0	.	100	.	.	Atlas-SNP
KCNB2	9312	hgsc.bcm.edu	hg19	8	73849796	73849796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	KCNB2	NM_004770	exon3	c.C2206T	p.P736S	GCCAGGCCACTGC	.	225.0	17.0	106.0	0.0	.	228	.	.	Atlas-SNP
SLC10A5	347051	hgsc.bcm.edu	hg19	8	82606852	82606852	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	SLC10A5	NM_001010893	exon1	c.A356T	p.K119M	ACATTCTTGATTT	.	234.0	32.0	103.0	0.0	.	35	.	.	Atlas-SNP
GRHL2	79977	hgsc.bcm.edu	hg19	8	102570707	102570707	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	GRHL2	NM_024915	exon4	c.A345T	p.Q115H	AGTGCAAGTCCTA	.	352.0	41.0	146.0	0.0	.	68	.	.	Atlas-SNP
ZFPM2	23414	hgsc.bcm.edu	hg19	8	106331209	106331209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ZFPM2	NM_012082	exon1	c.C40T	p.R14W	ATCAAACGTAAGT	.	673.0	148.0	291.0	0.0	.	219	.	.	Atlas-SNP
TRPS1	7227	hgsc.bcm.edu	hg19	8	116616720	116616720	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	TRPS1	NM_014112	exon4	c.T1476C	p.S492S	AATGACAGAGCCC	.	180.0	17.0	89.0	0.0	.	516	.	.	Atlas-SNP
TRPS1	7227	hgsc.bcm.edu	hg19	8	116631492	116631492	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	TRPS1	NM_014112	exon3	c.T833A	p.L278X	AGGGCCAAGATTT	.	299.0	27.0	191.0	0.0	.	516	.	.	Atlas-SNP
KIFC2	90990	hgsc.bcm.edu	hg19	8	145698549	145698549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	KIFC2	NM_145754	exon17	c.T2233C	p.S745P	AGACAGTCTGCTC	.	193.0	15.0	85.0	0.0	.	53	.	.	Atlas-SNP
PSIP1	11168	hgsc.bcm.edu	hg19	9	15472658	15472658	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	PSIP1	NM_021144	exon9	c.A949C	p.K317Q	CTTGCTTGCGTTT	.	84.0	46.0	87.0	0.0	.	93	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79320430	79320430	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	PRUNE2	NM_015225	exon8	c.A6760T	p.S2254C	AAAAGCTGTCTGA	.	141.0	35.0	152.0	0.0	.	331	.	.	Atlas-SNP
TLE4	7091	hgsc.bcm.edu	hg19	9	82324551	82324551	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	TLE4	NM_007005	exon14	c.C1277G	p.P426R	TTGATCCACACCA	.	78.0	21.0	75.0	0.0	.	187	.	.	Atlas-SNP
SPATA31C1	441452	hgsc.bcm.edu	hg19	9	90535925	90535925	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	.	NM_001145124	exon4	c.C1103G	p.P368R	CTTTCCCAGTCCT	.	143.0	41.0	126.0	0.0	.	.	.	.	Atlas-SNP
SLC44A1	23446	hgsc.bcm.edu	hg19	9	108145486	108145486	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	SLC44A1	NM_080546	exon14	c.T1715A	p.L572Q	TGCCTCTGATCAT	.	75.0	11.0	63.0	0.0	.	61	.	.	Atlas-SNP
DAB2IP	153090	hgsc.bcm.edu	hg19	9	124535752	124535752	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	DAB2IP	NM_032552	exon12	c.A2861T	p.K954M	AACTGAAGCCACG	.	123.0	26.0	135.0	0.0	.	150	.	.	Atlas-SNP
SSNA1	8636	hgsc.bcm.edu	hg19	9	140083520	140083520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	SSNA1	NM_003731	exon2	c.A55G	p.I19V	CCAGGCATAGAGG	.	100.0	15.0	89.0	0.0	.	11	.	.	Atlas-SNP
GDI2	2665	hgsc.bcm.edu	hg19	10	5842576	5842576	+	Silent	SNP	T	T	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	GDI2	NM_001115156	exon2	c.A138C	p.I46I	TGGTGTTATAGAT	.	104.0	34.0	84.0	0.0	.	26	.	.	Atlas-SNP
ITIH5	80760	hgsc.bcm.edu	hg19	10	7618817	7618817	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ITIH5	NM_001001851	exon10	c.T1577A	p.L526Q	ACGTGCAGGTGAT	.	198.0	51.0	139.0	0.0	.	343	.	.	Atlas-SNP
SKIDA1	387640	hgsc.bcm.edu	hg19	10	21805483	21805483	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	.	NM_207371	exon4	c.G1269A	p.E423E	CTCTTCCTCCTCC	.	89.0	5.0	59.0	0.0	.	.	.	.	Atlas-SNP
BMS1	9790	hgsc.bcm.edu	hg19	10	43312077	43312077	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	BMS1	NM_014753	exon14	c.A2360C	p.E787A	ACTTGGAAACAGG	.	16.0	5.0	16.0	0.0	.	132	.	.	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	hg19	10	49939214	49939214	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	WDFY4	NM_020945	exon9	c.A1189T	p.S397C	AAAGCCAGTGACT	.	107.0	23.0	65.0	0.0	.	205	.	.	Atlas-SNP
ZWINT	11130	hgsc.bcm.edu	hg19	10	58119616	58119616	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ZWINT	NM_032997	exon5	c.257-2A>T	.	CTGTCCTGAGATG	.	85.0	23.0	53.0	0.0	.	39	.	.	Atlas-SNP
IPMK	253430	hgsc.bcm.edu	hg19	10	59956280	59956280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	IPMK	NM_152230	exon6	c.G808A	p.D270N	TTCTGTCATTCAA	.	231.0	20.0	105.0	0.0	.	45	.	.	Atlas-SNP
DDX21	9188	hgsc.bcm.edu	hg19	10	70719759	70719759	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	DDX21,lower_third,carcinoma,0,1	DDX21	NM_004728	exon2	c.G285A	p.L95L	AAGTTTGAGAAAG	.	540.0	229.0	505.0	1.0	.	57	.	.	Atlas-SNP
NLRP6	171389	hgsc.bcm.edu	hg19	11	279503	279503	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	NLRP6	NM_138329	exon2	c.C206A	p.A69D	AGCTGGCCCAGTT	.	91.0	32.0	104.0	0.0	.	4	.	.	Atlas-SNP
KRTAP5-3	387266	hgsc.bcm.edu	hg19	11	1629046	1629046	+	Silent	SNP	G	G	A	rs12808755		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	KRTAP5-3	NM_001012708	exon1	c.C570T	p.C190C	GGGTTTGCAGCAG	.	57.0	6.0	47.0	0.0	.	33	.	.	Atlas-SNP
OR51G1	79324	hgsc.bcm.edu	hg19	11	4945292	4945292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	OR51G1	NM_001005237	exon1	c.A278G	p.E93G	CCAATCTCTCTGG	.	168.0	30.0	133.0	0.0	.	74	.	.	Atlas-SNP
OR8I2	120586	hgsc.bcm.edu	hg19	11	55861433	55861433	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	OR8I2	NM_001003750	exon1	c.A650G	p.Y217C	TCACTTATATCAT	.	70.0	26.0	81.0	0.0	.	119	.	.	Atlas-SNP
ATG16L2	89849	hgsc.bcm.edu	hg19	11	72525573	72525573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ATG16L2	NM_033388	exon1	c.C83A	p.T28K	ACCGTACGCAAAA	.	141.0	25.0	131.0	0.0	.	26	.	.	Atlas-SNP
FAM168A	23201	hgsc.bcm.edu	hg19	11	73141779	73141779	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	FAM168A	NM_015159	exon3	c.A107T	p.Y36F	GGATTGTAGGCAG	.	114.0	19.0	78.0	0.0	.	18	.	.	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	hg19	11	78369171	78369171	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	.	NM_001098816	exon34	c.T8242A	p.Y2748N	CTGGGTACTGCTC	.	90.0	35.0	92.0	0.0	.	.	.	.	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	hg19	11	78387204	78387204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	.	NM_001098816	exon30	c.G5489A	p.R1830Q	CGCAGCCGGCGCC	.	54.0	9.0	47.0	0.0	.	.	.	.	Atlas-SNP
TMEM135	65084	hgsc.bcm.edu	hg19	11	86802424	86802424	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	TMEM135	NM_022918	exon4	c.A383T	p.Y128F	CAATTTATATGGC	.	134.0	26.0	93.0	0.0	.	40	.	.	Atlas-SNP
TTC12	54970	hgsc.bcm.edu	hg19	11	113209515	113209515	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	TTC12	NM_017868	exon9	c.A596T	p.K199M	ATAAGAAGATCTT	.	139.0	62.0	122.0	0.0	.	66	.	.	Atlas-SNP
VWA5A	4013	hgsc.bcm.edu	hg19	11	124013257	124013257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	VWA5A	NM_014622	exon16	c.T2132C	p.I711T	AAGAAATAATGGC	.	101.0	35.0	93.0	0.0	.	102	.	.	Atlas-SNP
IPO8	10526	hgsc.bcm.edu	hg19	12	30837345	30837345	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	IPO8	NM_006390	exon3	c.A213T	p.R71R	AGGTTCTCGATCT	.	162.0	51.0	107.0	0.0	.	105	.	.	Atlas-SNP
CNTN1	1272	hgsc.bcm.edu	hg19	12	41410583	41410583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	CNTN1,colon,carcinoma,0,1	CNTN1	NM_001843	exon19	c.C2284T	p.P762S	ACTAATCCTGATA	.	203.0	67.0	130.0	0.0	.	207	.	.	Atlas-SNP
KRT74	121391	hgsc.bcm.edu	hg19	12	52962149	52962149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	KRT74	NM_175053	exon7	c.G1159A	p.A387T	CGTCAGCGATGGC	.	113.0	11.0	84.0	0.0	.	67	.	.	Atlas-SNP
KRT3	3850	hgsc.bcm.edu	hg19	12	53189455	53189455	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	KRT3	NM_057088	exon1	c.C372T	p.G124G	TCCAAAGCCACCA	.	151.0	45.0	113.0	0.0	.	65	.	.	Atlas-SNP
HOXC12	3228	hgsc.bcm.edu	hg19	12	54348808	54348808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	HOXC12	NM_173860	exon1	c.C95A	p.S32Y	GCGCGTCCGGGGC	.	299.0	87.0	188.0	0.0	.	19	.	.	Atlas-SNP
ITGA5	3678	hgsc.bcm.edu	hg19	12	54797997	54797997	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ITGA5	NM_002205	exon15	c.C1497T	p.L499L	GATGGTGAGGGAG	.	138.0	31.0	106.0	0.0	.	99	.	.	Atlas-SNP
WIF1	11197	hgsc.bcm.edu	hg19	12	65460513	65460513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	WIF1	NM_007191	exon6	c.T638C	p.L213P	GTACAAAGGGCTT	.	172.0	53.0	135.0	0.0	.	96	.	.	Atlas-SNP
KCNC2	3747	hgsc.bcm.edu	hg19	12	75601469	75601469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	KCNC2	NM_139137	exon2	c.G295T	p.G99C	CGCGGCCGCCACC	.	304.0	81.0	224.0	0.0	.	239	.	.	Atlas-SNP
PTPRQ	374462	hgsc.bcm.edu	hg19	12	80982127	80982127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	PTPRQ	NM_001145026	exon23	c.A3989G	p.Y1330C	CAGTATATGGATT	.	147.0	48.0	127.0	0.0	.	119	.	.	Atlas-SNP
ANO4	121601	hgsc.bcm.edu	hg19	12	101480526	101480526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ANO4	NM_178826	exon16	c.T1520C	p.I507T	CGTTAATCAGGAA	.	160.0	42.0	147.0	0.0	.	183	.	.	Atlas-SNP
MTUS2	23281	hgsc.bcm.edu	hg19	13	30066851	30066851	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	MTUS2	NM_001033602	exon10	c.T3604A	p.L1202M	CTGTCATTGCAGG	.	116.0	19.0	89.0	0.0	.	279	.	.	Atlas-SNP
USPL1	10208	hgsc.bcm.edu	hg19	13	31205172	31205172	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	USPL1	NM_005800	exon4	c.A429G	p.G143G	TAATGGAGAAGTA	.	148.0	14.0	117.0	0.0	.	82	.	.	Atlas-SNP
SCEL	8796	hgsc.bcm.edu	hg19	13	78163340	78163340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	SCEL	NM_003843	exon10	c.C607A	p.Q203K	CCTAACCAGCTGA	.	110.0	25.0	85.0	0.0	.	85	.	.	Atlas-SNP
EDNRB	1910	hgsc.bcm.edu	hg19	13	78472337	78472337	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	EDNRB	NM_001201397	exon8	c.T1597G	p.X533G	TCTTTCAAGATGA	.	80.0	14.0	42.0	0.0	.	172	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103391517	103391517	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	.	NM_001146197	exon4	c.G11530T	p.E3844X	TACTTTCATCTTC	.	148.0	66.0	142.0	0.0	.	.	.	.	Atlas-SNP
C14orf119	55017	hgsc.bcm.edu	hg19	14	23567275	23567275	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	C14orf119	NM_017924	exon2	c.A408G	p.T136T	TGCTACAGCTGGT	.	70.0	17.0	73.0	0.0	.	7	.	.	Atlas-SNP
HECTD1	25831	hgsc.bcm.edu	hg19	14	31604292	31604292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	HECTD1	NM_015382	exon22	c.A3364G	p.N1122D	CTGAATTATCACG	.	96.0	16.0	124.0	0.0	.	159	.	.	Atlas-SNP
FAM179B	23116	hgsc.bcm.edu	hg19	14	45465007	45465007	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	FAM179B	NM_015091	exon2	c.T2105G	p.V702G	TGCCAGTCAATGA	.	93.0	15.0	106.0	0.0	.	115	.	.	Atlas-SNP
BMP4	652	hgsc.bcm.edu	hg19	14	54416923	54416923	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	BMP4	NM_130851	exon4	c.A1054T	p.T352S	GGTTGGTTGAGTT	.	216.0	40.0	191.0	0.0	.	45	.	.	Atlas-SNP
KCNH5	27133	hgsc.bcm.edu	hg19	14	63246579	63246579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	KCNH5	NM_139318	exon10	c.A1886G	p.N629S	CGGACGTTCGCAC	.	115.0	22.0	144.0	0.0	.	320	.	.	Atlas-SNP
ZBTB1	22890	hgsc.bcm.edu	hg19	14	64998591	64998591	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ZBTB1	NM_014950	exon3	c.G1911A	p.G637G	AATAGGGCCTTCT	.	106.0	19.0	91.0	0.0	.	93	.	.	Atlas-SNP
EML5	161436	hgsc.bcm.edu	hg19	14	89258735	89258735	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	EML5	NM_183387	exon1	c.A113T	p.Y38F	ACGAAGTATACGA	.	64.0	14.0	95.0	0.0	.	141	.	.	Atlas-SNP
TDRD9	122402	hgsc.bcm.edu	hg19	14	104436890	104436890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	TDRD9	NM_153046	exon6	c.A778G	p.T260A	GAACGAACAGAAG	.	120.0	15.0	110.0	0.0	.	175	.	.	Atlas-SNP
DISP2	85455	hgsc.bcm.edu	hg19	15	40660665	40660665	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	DISP2,NS,carcinoma,0,1	DISP2	NM_033510	exon8	c.C2352A	p.G784G	CACTGGCGACCCT	.	114.0	33.0	87.0	0.0	.	86	.	.	Atlas-SNP
MAP1A	4130	hgsc.bcm.edu	hg19	15	43819399	43819399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	MAP1A	NM_002373	exon4	c.C5728T	p.R1910C	GACTACCGCAAGG	.	218.0	39.0	176.0	0.0	.	189	.	.	Atlas-SNP
USP8	9101	hgsc.bcm.edu	hg19	15	50751310	50751310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	USP8	NM_001128610	exon5	c.C449T	p.A150V	CATTGGCTAAAGG	.	551.0	130.0	378.0	0.0	.	90	.	.	Atlas-SNP
TRPM7	54822	hgsc.bcm.edu	hg19	15	50885907	50885907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	TRPM7	NM_017672	exon25	c.A3515G	p.D1172G	TCAAAATCATGAA	.	102.0	31.0	70.0	0.0	.	145	.	.	Atlas-SNP
UBE2Q2	92912	hgsc.bcm.edu	hg19	15	76183289	76183289	+	Silent	SNP	G	G	C	rs142780659	bycluster;by1000genomes;alternate_allele	TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	UBE2Q2,NS,carcinoma,0,1	UBE2Q2	NM_173469	exon11	c.G963C	p.S321S	AGAATCGGTCATC	.	154.0	42.0	104.0	0.0	.	26	.	G|1.000;A|0.000	Atlas-SNP
WDR61	80349	hgsc.bcm.edu	hg19	15	78582307	78582307	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	WDR61,NS,carcinoma,0,1	WDR61	NM_025234	exon6	c.C454G	p.L152V	TACTAAGAATGAA	.	166.0	16.0	121.0	0.0	.	26	.	.	Atlas-SNP
NME3	4832	hgsc.bcm.edu	hg19	16	1821508	1821508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	NME3	NM_002513	exon1	c.G28A	p.A10T	GGTTAGCGAAGAT	.	87.0	18.0	55.0	0.0	.	4	.	.	Atlas-SNP
TNRC6A	27327	hgsc.bcm.edu	hg19	16	24788429	24788429	+	Silent	SNP	A	A	G	rs60829899		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	TNRC6A	NM_014494	exon5	c.A339G	p.P113P	GCAGCCACAGCCG	.	88.0	6.0	77.0	0.0	.	171	.	.	Atlas-SNP
NUTF2	10204	hgsc.bcm.edu	hg19	16	67902495	67902495	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	NUTF2	NM_005796	exon4	c.A263T	p.Q88L	TGGGCCAGCTTAA	.	70.0	38.0	60.0	0.0	.	11	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577148	7577148	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	TP53_ENST00000455263,NS,carcinoma,+1,12	TP53	NM_000546	exon8	c.C790T	p.L264L	CCAGTAGATTACC	.	71.0	33.0	85.0	0.0	.	33396	.	.	Atlas-SNP
GUCY2D	3000	hgsc.bcm.edu	hg19	17	7909980	7909980	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	GUCY2D	NM_000180	exon4	c.A1326T	p.A442A	ATCAGCACCCGGA	.	93.0	33.0	76.0	0.0	.	82	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11701056	11701056	+	Missense_Mutation	SNP	A	A	T	rs145239685	alternate_allele	TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	DNAH9	NM_001372	exon43	c.A8366T	p.N2789I	ACCACAATGAAGT	.	114.0	42.0	131.0	0.0	.	695	.	A|1.000;G|0.000	Atlas-SNP
GIT1	28964	hgsc.bcm.edu	hg19	17	27909015	27909015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	GIT1	NM_014030	exon5	c.C553A	p.L185M	CAAGCAGCTCGGC	.	55.0	7.0	41.0	0.0	.	84	.	.	Atlas-SNP
CPD	1362	hgsc.bcm.edu	hg19	17	28778776	28778776	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	CPD	NM_001304	exon14	c.T3117C	p.D1039D	TCCAGATGGGCGA	.	141.0	53.0	135.0	0.0	.	89	.	.	Atlas-SNP
RHOT1	55288	hgsc.bcm.edu	hg19	17	30538176	30538176	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	RHOT1	NM_001033568	exon20	c.C1877G	p.T626R	GGTGTACATTTTG	.	83.0	7.0	90.0	0.0	.	69	.	.	Atlas-SNP
KRTAP3-3	85293	hgsc.bcm.edu	hg19	17	39150197	39150197	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	KRTAP3-3	NM_033185	exon1	c.T153A	p.C51X	TGGGGGACAGTTG	.	250.0	15.0	242.0	0.0	.	11	.	.	Atlas-SNP
DHX8	1659	hgsc.bcm.edu	hg19	17	41590838	41590838	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	DHX8	NM_004941	exon17	c.A2611T	p.I871F	ACAGGGATTGACC	.	161.0	72.0	151.0	0.0	.	98	.	.	Atlas-SNP
CACNA1G	8913	hgsc.bcm.edu	hg19	17	48655580	48655580	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	CACNA1G	NM_001256360	exon9	c.C1956T	p.S652S	CTCCAGCCCTTGC	.	121.0	10.0	127.0	0.0	.	659	.	.	Atlas-SNP
KCNH6	81033	hgsc.bcm.edu	hg19	17	61623190	61623190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	KCNH6	NM_030779	exon14	c.G2912A	p.G971D	ACCTTGGCTCTGT	.	68.0	26.0	73.0	0.0	.	122	.	.	Atlas-SNP
DDX42	11325	hgsc.bcm.edu	hg19	17	61895571	61895571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	DDX42	NM_203499	exon18	c.C2630T	p.A877V	GGGGTGCAAATGA	.	78.0	26.0	61.0	0.0	.	86	.	.	Atlas-SNP
CD79B	974	hgsc.bcm.edu	hg19	17	62007563	62007563	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	CD79B	NM_001039933	exon3	c.A304T	p.N102Y	ATTCGTTCTGGGA	.	85.0	7.0	73.0	0.0	.	38	.	.	Atlas-SNP
SMURF2	64750	hgsc.bcm.edu	hg19	17	62553767	62553767	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	SMURF2	NM_022739	exon13	c.A1390G	p.I464V	TATAAATATCATC	.	357.0	35.0	377.0	0.0	.	63	.	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	hg19	17	76445590	76445590	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	DNAH17	NM_173628	exon69	c.T11117A	p.L3706Q	TCCGTCAGGTTGA	.	131.0	54.0	114.0	0.0	.	347	.	.	Atlas-SNP
SLC39A6	25800	hgsc.bcm.edu	hg19	18	33689641	33689641	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	SLC39A6	NM_012319	exon10	c.A2183T	p.Q728L	GCATTCTGTAAAA	.	378.0	196.0	339.0	0.0	.	81	.	.	Atlas-SNP
NEDD4L	23327	hgsc.bcm.edu	hg19	18	56056334	56056334	+	Silent	SNP	C	C	T	rs375065890		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	NEDD4L	NM_001144967	exon28	c.C2565T	p.L855L	CGGCCTCGGTGAT	.	108.0	7.0	123.0	0.0	.	126	.	.	Atlas-SNP
SERPINB4	6318	hgsc.bcm.edu	hg19	18	61310753	61310753	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	SERPINB4	NM_002974	exon2	c.G59C	p.R20T	GATTTTCTGAACT	.	190.0	85.0	220.0	0.0	.	89	.	.	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	hg19	19	11143993	11143993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	SMARCA4_ENST00000358026,NS,carcinoma,0,3	SMARCA4	NM_003072	exon26	c.C3574T	p.R1192C	GCCCACCGCATCG	.	151.0	69.0	160.0	0.0	.	502	.	.	Atlas-SNP
CLIP3	25999	hgsc.bcm.edu	hg19	19	36510204	36510204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	CLIP3	NM_001199570	exon7	c.G923A	p.G308D	AGTGTGCCCGTCT	.	40.0	25.0	38.0	0.0	.	53	.	.	Atlas-SNP
WDR62	284403	hgsc.bcm.edu	hg19	19	36545927	36545927	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	WDR62	NM_173636	exon1	c.G54A	p.L18L	GAAGCTGCCCTCT	.	165.0	108.0	138.0	0.0	.	102	.	.	Atlas-SNP
LMTK3	114783	hgsc.bcm.edu	hg19	19	49001083	49001083	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	LMTK3	NM_001080434	exon12	c.C3330T	p.N1110N	CGTCCCGTTCTTG	.	31.0	15.0	27.0	0.0	.	125	.	.	Atlas-SNP
ZNF628	89887	hgsc.bcm.edu	hg19	19	55995139	55995139	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ZNF628	NM_033113	exon3	c.A2579C	p.Q860P	CAGCACAGGAGGT	.	140.0	72.0	125.0	0.0	.	75	.	.	Atlas-SNP
TGM6	343641	hgsc.bcm.edu	hg19	20	2413197	2413197	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	TGM6	NM_198994	exon13	c.A2029C	p.S677R	TCCAAAAGTGGCC	.	151.0	34.0	100.0	0.0	.	126	.	.	Atlas-SNP
PLTP	5360	hgsc.bcm.edu	hg19	20	44533489	44533489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	PLTP	NM_006227	exon10	c.G892A	p.D298N	CCAGGTCGTGGGG	.	292.0	109.0	192.0	0.0	.	49	.	.	Atlas-SNP
RBBP8NL	140893	hgsc.bcm.edu	hg19	20	60989520	60989520	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	.	NM_080833	exon10	c.T887A	p.L296Q	AGGGACAGGGGGC	.	128.0	43.0	88.0	0.0	.	.	.	.	Atlas-SNP
ITGB2	3689	hgsc.bcm.edu	hg19	21	46321441	46321441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ITGB2	NM_000211	exon6	c.G707T	p.G236V	TCCAGCCCACCCT	.	79.0	37.0	72.0	0.0	.	107	.	.	Atlas-SNP
LSS	4047	hgsc.bcm.edu	hg19	21	47614405	47614405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	LSS	NM_001001438	exon20	c.G1988A	p.R663Q	CCCCACCGAACGG	.	67.0	29.0	51.0	0.0	.	50	.	.	Atlas-SNP
MICAL3	57553	hgsc.bcm.edu	hg19	22	18347692	18347692	+	Missense_Mutation	SNP	C	C	T	rs199950640	bycluster	TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	MICA3_HUMAN,NS,carcinoma,0,3	MICAL3	NM_001136004	exon23	c.G2950A	p.V984M	TGGCCACGGCGTT	.	97.0	14.0	97.0	0.0	.	53	.	.	Atlas-SNP
TXN2	25828	hgsc.bcm.edu	hg19	22	36863964	36863964	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	TXN2	NM_012473	exon4	c.G388C	p.V130L	CTGACACCTGGGT	.	77.0	54.0	65.0	0.0	.	15	.	.	Atlas-SNP
MICALL1	85377	hgsc.bcm.edu	hg19	22	38328562	38328562	+	Silent	SNP	C	C	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	MICALL1	NM_033386	exon11	c.C2019G	p.V673V	GCAGGTCCAGGCT	.	114.0	56.0	101.0	0.0	.	53	.	.	Atlas-SNP
MOSPD2	158747	hgsc.bcm.edu	hg19	X	14915270	14915270	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	MOSPD2	NM_152581	exon5	c.A387T	p.I129I	GCTCATAGCATTC	.	485.0	227.0	461.0	0.0	.	46	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	32716095	32716095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	DMD	NM_004006	exon9	c.G852T	p.Q284H	ATATCCCTGTGCT	.	171.0	46.0	173.0	0.0	.	2127	.	.	Atlas-SNP
DCAF12L1	139170	hgsc.bcm.edu	hg19	X	125686535	125686535	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	DCAF12L1	NM_178470	exon1	c.C57T	p.D19D	CTCGGCGTCCGCC	.	113.0	46.0	139.0	0.0	.	135	.	.	Atlas-SNP
ELF4	2000	hgsc.bcm.edu	hg19	X	129205014	129205014	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ELF4	NM_001421	exon8	c.809+1G>C	.	CTCCTACCTTAGT	.	77.0	13.0	65.0	0.0	.	67	.	.	Atlas-SNP
COX1	5742	hgsc.bcm.edu	hg19	MT	7210	7210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	.	ENST00000361624	exon1	c.T1307C	p.M436T	CCGGAATGCCCCG	.	70.0	63.0	23.0	0.0	.	.	.	.	Atlas-SNP
BBS4	585	hgsc.bcm.edu	hg19	15	73020331	73020332	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	BBS4	NM_033028	exon9	c.638_639insA	p.L213fs	.	.	81.0	22.0	72.0	0.0	.	34	.	.	Atlas-INDEL
TP53	7157	hgsc.bcm.edu	hg19	17	7577149	7577150	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	TP53,colon,carcinoma,-1,1	TP53	NM_001126112	exon8	c.789_790insG	p.N263fs	.	.	71.0	33.0	83.0	0.0	.	33396	.	.	Atlas-INDEL
ETV6	2120	hgsc.bcm.edu	hg19	12	12006418	12006418	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AACZ-01A-11D-A40R-10	TCGA-DD-AACZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3f597b1b-500d-482d-ade1-61d7dffef94e	437561b3-e574-4171-b2ca-dafac20f5230	.	ETV6	NM_001987	exon4	c.385delC	p.L129fs	.	.	129.0	31.0	92.0	0.0	.	91	.	.	Atlas-INDEL
