Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
AGRN	375790	hgsc.bcm.edu	hg19	1	980903	980903	+	Missense_Mutation	SNP	C	C	A	rs138248828	bycluster;byfrequency;alternate_allele	TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	AGRN	NM_198576	exon14	c.C2536A	p.P846T	TGTACACGTGAGT	.	27.0	26.0	48.0	0.0	.	110	.	C|1.000;T|0.000	Atlas-SNP
IGSF3	3321	hgsc.bcm.edu	hg19	1	117122291	117122291	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	IGSF3_ENST00000369483,NS,carcinoma,0,4	IGSF3	NM_001542	exon11	c.G3117C	p.E1039D	GTCGTCCTCCTCC	.	70.0	4.0	68.0	0.0	.	294	.	.	Atlas-SNP
ATP8B2	57198	hgsc.bcm.edu	hg19	1	154318730	154318730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	ATP8B2	NM_020452	exon25	c.G2901A	p.M967I	GAGCATGGAGTAC	.	151.0	38.0	115.0	0.0	.	158	.	.	Atlas-SNP
TMEM79	84283	hgsc.bcm.edu	hg19	1	156261286	156261286	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	TMEM79	NM_032323	exon4	c.T1082C	p.F361S	ACATGTTCGTGGT	.	87.0	25.0	58.0	0.0	.	43	.	.	Atlas-SNP
TMEM79	84283	hgsc.bcm.edu	hg19	1	156261289	156261289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	TMEM79	NM_032323	exon4	c.T1085C	p.V362A	TGTTCGTGGTGGA	.	85.0	23.0	59.0	0.0	.	43	.	.	Atlas-SNP
COPA	1314	hgsc.bcm.edu	hg19	1	160309715	160309715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	COPA	NM_001098398	exon3	c.A212G	p.D71G	TAGTCATCTCCTC	.	105.0	61.0	71.0	0.0	.	181	.	.	Atlas-SNP
USF1	7391	hgsc.bcm.edu	hg19	1	161011957	161011957	+	Silent	SNP	A	A	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	USF1	NM_001276373	exon5	c.T225G	p.T75T	TCCCTCAGTTTGG	.	167.0	53.0	87.0	0.0	.	29	.	.	Atlas-SNP
C1orf112	55732	hgsc.bcm.edu	hg19	1	169799444	169799444	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	C1orf112	NM_018186	exon14	c.C1359A	p.T453T	GATCACCTCTTTG	.	84.0	34.0	49.0	0.0	.	74	.	.	Atlas-SNP
CR1	1378	hgsc.bcm.edu	hg19	1	207785177	207785177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	CR1	NM_000651	exon38	c.C6451T	p.P2151S	TGGAGCCCTGAAG	.	189.0	124.0	125.0	0.0	.	354	.	.	Atlas-SNP
CAMK1G	57172	hgsc.bcm.edu	hg19	1	209785166	209785166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	CAMK1G	NM_020439	exon11	c.C945A	p.H315Q	GGTGCACCACATG	.	72.0	25.0	38.0	0.0	.	49	.	.	Atlas-SNP
FBXO28	23219	hgsc.bcm.edu	hg19	1	224340935	224340935	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	FBXO28	NM_015176	exon4	c.T608G	p.I203R	GGGATATATCCTC	.	154.0	53.0	86.0	0.0	.	34	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228548151	228548151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	OBSCN	NM_052843	exon81	c.G19558T	p.A6520S	GGGCATGCACTGG	.	62.0	19.0	39.0	0.0	.	2142	.	.	Atlas-SNP
RHOU	58480	hgsc.bcm.edu	hg19	1	228871685	228871685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	RHOU	NM_021205	exon1	c.G196A	p.V66M	AGCCTGGTGGTGA	.	76.0	25.0	32.0	0.0	.	20	.	.	Atlas-SNP
ZNF124	7678	hgsc.bcm.edu	hg19	1	247320147	247320147	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	ZNF124	NM_003431	exon4	c.A591G	p.E197E	GGGTTCTTCACCA	.	141.0	39.0	95.0	0.0	.	39	.	.	Atlas-SNP
MBOAT2	129642	hgsc.bcm.edu	hg19	2	9017206	9017206	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	MBOAT2	NM_138799	exon7	c.A644T	p.N215I	TTTCCATTTTCAC	.	108.0	54.0	117.0	0.0	.	36	.	.	Atlas-SNP
MBOAT2	129642	hgsc.bcm.edu	hg19	2	9017208	9017208	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	MBOAT2	NM_138799	exon7	c.A642C	p.E214D	TCCATTTTCACCA	.	108.0	55.0	121.0	0.0	.	36	.	.	Atlas-SNP
GREB1	9687	hgsc.bcm.edu	hg19	2	11751071	11751071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	GREB1	NM_014668	exon18	c.C2924T	p.A975V	GGCTGGCGCTGGA	.	177.0	71.0	184.0	0.0	.	308	.	.	Atlas-SNP
THADA	63892	hgsc.bcm.edu	hg19	2	43460007	43460007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	THADA	NM_001083953	exon37	c.C5311A	p.Q1771K	CCACCTGGCAGAA	.	189.0	85.0	180.0	0.0	.	131	.	.	Atlas-SNP
SFXN5	94097	hgsc.bcm.edu	hg19	2	73195626	73195626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	SFXN5	NM_144579	exon12	c.C778T	p.P260S	GCATGGGCAGGAC	.	211.0	95.0	209.0	0.0	.	31	.	.	Atlas-SNP
CCT7	10574	hgsc.bcm.edu	hg19	2	73479792	73479792	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	CCT7	NM_006429	exon12	c.A1435T	p.I479F	GTAGACATCAACA	.	234.0	92.0	230.0	0.0	.	60	.	.	Atlas-SNP
CTNNA2	1496	hgsc.bcm.edu	hg19	2	80816543	80816543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	CTNNA2	NM_001164883	exon15	c.G2122T	p.G708C	GACAGCGGCAATG	.	215.0	94.0	230.0	0.0	.	462	.	.	Atlas-SNP
CTNNA2	1496	hgsc.bcm.edu	hg19	2	80816544	80816544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	CTNNA2	NM_001164883	exon15	c.G2123T	p.G708V	ACAGCGGCAATGA	.	211.0	91.0	234.0	0.0	.	462	.	.	Atlas-SNP
TMEM87B	84910	hgsc.bcm.edu	hg19	2	112839010	112839010	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	TMEM87B	NM_032824	exon8	c.G753A	p.W251X	GTTCTGGATTGCA	.	96.0	47.0	74.0	0.0	.	52	.	.	Atlas-SNP
ZC3H6	376940	hgsc.bcm.edu	hg19	2	113089743	113089743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	ZC3H6	NM_198581	exon12	c.G3248T	p.S1083I	AAAGTAGTGACAA	.	302.0	148.0	310.0	0.0	.	93	.	.	Atlas-SNP
BAZ2B	29994	hgsc.bcm.edu	hg19	2	160257109	160257109	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	BAZ2B	NM_013450	exon18	c.2898+1G>T	.	CTTCTACCTCTAG	.	277.0	134.0	249.0	1.0	.	196	.	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	hg19	2	215876718	215876718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	ABCA12	NM_173076	exon16	c.C2098A	p.P700T	TTCTGGGCAGATG	.	95.0	49.0	92.0	0.0	.	368	.	.	Atlas-SNP
SCG2	7857	hgsc.bcm.edu	hg19	2	224462698	224462698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	SCG2	NM_003469	exon2	c.G1303T	p.D435Y	AAATATCCTCAAC	.	83.0	41.0	61.0	0.0	.	99	.	.	Atlas-SNP
SP110	3431	hgsc.bcm.edu	hg19	2	231042313	231042313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	SP110_ENST00000540870,right_upper_lobe,carcinoma,0,2	SP110	NM_001185015	exon15	c.G1549A	p.A517T	TCTTTGCGTTCCT	.	102.0	39.0	93.0	0.0	.	105	.	.	Atlas-SNP
BHLHE40	8553	hgsc.bcm.edu	hg19	3	5022091	5022091	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	BHLHE40	NM_003670	exon3	c.A256C	p.T86P	AAACTTACAGTAA	.	106.0	50.0	98.0	0.0	.	35	.	.	Atlas-SNP
TATDN2	9797	hgsc.bcm.edu	hg19	3	10301858	10301858	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	TATDN2	NM_014760	exon3	c.C452G	p.S151C	CAAACTCTGAATT	.	198.0	94.0	192.0	0.0	.	59	.	.	Atlas-SNP
TTC21A	199223	hgsc.bcm.edu	hg19	3	39159608	39159608	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	TTC21A,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	TTC21A	NM_145755	exon7	c.C765T	p.T255T	TCTAACCGTGCAT	.	72.0	35.0	83.0	0.0	.	96	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	A	rs121913403	bycluster	TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	CTNNB1,gallbladder,other,0,1	CTNNB1	NM_001098209	exon3	c.C110A	p.S37Y	TCCATTCTGGTGC	.	121.0	57.0	144.0	0.0	.	4904	.	.	Atlas-SNP
PRSS42	339906	hgsc.bcm.edu	hg19	3	46871983	46871983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	PRSS42	NM_182702	exon5	c.G793A	p.G265R	AATCTCCCTAGAG	.	60.0	27.0	79.0	0.0	.	17	.	.	Atlas-SNP
SETD2	29072	hgsc.bcm.edu	hg19	3	47161670	47161670	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	SETD2	NM_014159	exon4	c.4454+2T>G	.	AGACTTACCTTTC	.	42.0	24.0	34.0	0.0	.	721	.	.	Atlas-SNP
AMIGO3	386724	hgsc.bcm.edu	hg19	3	49755432	49755432	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	AMIGO3	NM_198722	exon1	c.C1467A	p.G489G	CTCAGAGCCAGCC	.	58.0	8.0	44.0	0.0	.	40	.	.	Atlas-SNP
SLC9C1	285335	hgsc.bcm.edu	hg19	3	111901012	111901012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	.	NM_183061	exon21	c.G2617T	p.D873Y	TTTTATCTAGCCA	.	319.0	143.0	270.0	1.0	.	.	.	.	Atlas-SNP
TM4SF4	7104	hgsc.bcm.edu	hg19	3	149205519	149205519	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	TM4SF4	NM_004617	exon3	c.A378G	p.T126T	TAGTACATGGGGC	.	89.0	38.0	95.0	0.0	.	27	.	.	Atlas-SNP
PIK3CA	5290	hgsc.bcm.edu	hg19	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	rs121913279	bycluster	TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	PIK3CA_ENST00000263967,NS,adenocarcinoma,0,2044	PIK3CA	NM_006218	exon21	c.A3140T	p.H1047L	ATGCACATCATGG	.	148.0	63.0	120.0	0.0	.	8460	.	.	Atlas-SNP
KCNMB3	27094	hgsc.bcm.edu	hg19	3	178968889	178968889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	KCNMB3	NM_014407	exon1	c.G3A	p.M1I	AAAGTCCATCTAA	.	92.0	38.0	107.0	0.0	.	46	.	.	Atlas-SNP
TADA2B	93624	hgsc.bcm.edu	hg19	4	7056326	7056326	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	TADA2B,NS,carcinoma,0,1	TADA2B	NM_152293	exon2	c.G808T	p.E270X	TGCAAGGAGTTTG	.	125.0	54.0	111.0	0.0	.	29	.	.	Atlas-SNP
PCDH10	57575	hgsc.bcm.edu	hg19	4	134072506	134072506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	PCDH10	NM_032961	exon1	c.G1211T	p.R404L	CTTTCCGCCTCAA	.	75.0	35.0	73.0	0.0	.	290	.	.	Atlas-SNP
TTC29	83894	hgsc.bcm.edu	hg19	4	147724829	147724829	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	TTC29	NM_031956	exon11	c.C1110T	p.Y370Y	TTTGTTGTAGTAT	.	49.0	22.0	39.0	0.0	.	63	.	.	Atlas-SNP
KIAA0947	23379	hgsc.bcm.edu	hg19	5	5461382	5461382	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	KIAA0947	NM_015325	exon13	c.C1935T	p.P645P	TAATCCCCAGTCT	.	110.0	53.0	95.0	0.0	.	301	.	.	Atlas-SNP
NIPBL	25836	hgsc.bcm.edu	hg19	5	36971138	36971138	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	NIPBL	NM_015384	exon7	c.C771T	p.D257D	TAGTGACGTATGT	.	201.0	84.0	190.0	0.0	.	513	.	.	Atlas-SNP
TRIM36	55521	hgsc.bcm.edu	hg19	5	114469810	114469810	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	TRIM36	NM_018700	exon8	c.C1281T	p.S427S	AACTTTGCTCTGT	.	63.0	25.0	65.0	0.0	.	126	.	.	Atlas-SNP
SLC23A1	9963	hgsc.bcm.edu	hg19	5	138713935	138713935	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	SLC23A1	NM_152685	exon11	c.G1297C	p.G433R	TGCCCCCCAGGAT	.	281.0	116.0	249.0	0.0	.	51	.	.	Atlas-SNP
RARS	5917	hgsc.bcm.edu	hg19	5	167919732	167919732	+	Silent	SNP	C	C	G	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	RARS	NM_002887	exon3	c.C249G	p.V83V	AGAGGTCTTTGGT	.	105.0	59.0	120.0	0.0	.	58	.	.	Atlas-SNP
SCUBE3	222663	hgsc.bcm.edu	hg19	6	35207632	35207632	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	SCUBE3	NM_152753	exon8	c.C933G	p.I311M	TCTCATCAATGAG	.	75.0	43.0	48.0	0.0	.	99	.	.	Atlas-SNP
GPR111	222611	hgsc.bcm.edu	hg19	6	47647896	47647896	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	GPR111	NM_153839	exon6	c.A357G	p.L119L	GTTGCTACAAAAG	.	213.0	93.0	207.0	0.0	.	123	.	.	Atlas-SNP
C6orf70	55780	hgsc.bcm.edu	hg19	6	170181592	170181592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	C6orf70	NM_018341	exon18	c.A2020G	p.S674G	TCCACAAGTAAAG	.	90.0	85.0	185.0	0.0	.	63	.	.	Atlas-SNP
DFNA5	1687	hgsc.bcm.edu	hg19	7	24784273	24784273	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	DFNA5	NM_001127453	exon3	c.G312A	p.G104G	GCTGCCCCCCAGG	.	119.0	41.0	72.0	0.0	.	51	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	hg19	7	149483308	149483308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	.	NM_198455	exon23	c.G3376A	p.G1126R	TGGGATGGAGATC	.	31.0	12.0	38.0	0.0	.	.	.	.	Atlas-SNP
SHH	6469	hgsc.bcm.edu	hg19	7	155595681	155595681	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	SHH	NM_000193	exon3	c.G1302A	p.W434X	CGAGTACCAGTGG	.	765.0	370.0	862.0	0.0	.	34	.	.	Atlas-SNP
RP1	6101	hgsc.bcm.edu	hg19	8	55539105	55539105	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	RP1	NM_006269	exon4	c.C2663G	p.A888G	AACATGCTACAAC	.	167.0	82.0	124.0	0.0	.	429	.	.	Atlas-SNP
ARHGAP39	80728	hgsc.bcm.edu	hg19	8	145772918	145772918	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	ARHGAP39	NM_025251	exon6	c.G1552C	p.V518L	GCTCCACAAGCAG	.	56.0	18.0	26.0	0.0	.	80	.	.	Atlas-SNP
APBA1	320	hgsc.bcm.edu	hg19	9	72131502	72131502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	APBA1	NM_001163	exon2	c.G625A	p.A209T	CGCGTGCGTCCAG	.	24.0	11.0	15.0	0.0	.	96	.	.	Atlas-SNP
FNBP1	23048	hgsc.bcm.edu	hg19	9	132662721	132662721	+	Missense_Mutation	SNP	C	C	T	rs200153012	bycluster;alternate_allele	TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	FNBP1	NM_015033	exon14	c.G1534A	p.A512T	CCTGGGCGCAGTT	.	70.0	37.0	84.0	0.0	.	51	.	.	Atlas-SNP
FCN1	2219	hgsc.bcm.edu	hg19	9	137804337	137804337	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	FCN1	NM_002003	exon7	c.C593G	p.A198G	CCCTGGGCAGTCA	.	40.0	25.0	24.0	0.0	.	62	.	.	Atlas-SNP
KIAA1984	84960	hgsc.bcm.edu	hg19	9	139694929	139694929	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	KIAA1984	NM_001039374	exon5	c.T527A	p.L176Q	ACCTGCTGGATTA	.	83.0	38.0	77.0	0.0	.	39	.	.	Atlas-SNP
NSUN6	221078	hgsc.bcm.edu	hg19	10	18840757	18840757	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	NSUN6	NM_182543	exon9	c.A1066T	p.T356S	CTGCAGTGAAGAG	.	127.0	57.0	117.0	0.0	.	46	.	.	Atlas-SNP
PARG	8505	hgsc.bcm.edu	hg19	10	51028243	51028243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	PARG	NM_003631	exon17	c.A2744G	p.H915R	AAAATGTGCATGC	.	102.0	50.0	108.0	0.0	.	46	.	.	Atlas-SNP
PHYHIPL	84457	hgsc.bcm.edu	hg19	10	61005248	61005248	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	PHYHIPL	NM_032439	exon5	c.G1028C	p.G343A	CTGTGGGCACCGT	.	47.0	45.0	98.0	0.0	.	44	.	.	Atlas-SNP
EIF5AL1	143244	hgsc.bcm.edu	hg19	10	81272785	81272785	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	EIF5AL1_ENST00000520547,NS,carcinoma,0,2	EIF5AL1	NM_001099692	exon1	c.A380C	p.Y127S	AGAAGTACGACTG	.	84.0	26.0	145.0	0.0	.	24	.	.	Atlas-SNP
PTEN	5728	hgsc.bcm.edu	hg19	10	89720875	89720875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	PTEN,colon,carcinoma,+1,2	PTEN	NM_000314	exon8	c.G1026T	p.K342N	TTTTAAGGTCAGT	.	136.0	117.0	265.0	0.0	.	3652	.	.	Atlas-SNP
HMX3	340784	hgsc.bcm.edu	hg19	10	124895764	124895764	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	HMX3	NM_001105574	exon1	c.C198T	p.A66A	CGCCGCCGCTGCC	.	122.0	5.0	127.0	0.0	.	24	.	.	Atlas-SNP
ANO9	338440	hgsc.bcm.edu	hg19	11	431763	431763	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	ANO9,bladder,carcinoma,0,1	ANO9	NM_001012302	exon7	c.A470G	p.E157G	CGTCCCTCCCCCT	.	59.0	5.0	45.0	0.0	.	61	.	.	Atlas-SNP
TIMM10B	26515	hgsc.bcm.edu	hg19	11	6503054	6503054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	.	NM_012192	exon2	c.T107C	p.L36S	CCAGCTTGCACCA	.	45.0	22.0	40.0	0.0	.	.	.	.	Atlas-SNP
TAF10	6881	hgsc.bcm.edu	hg19	11	6632187	6632187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	TAF10	NM_006284	exon5	c.G623T	p.G208V	TTGATGCCATACT	.	172.0	84.0	154.0	0.0	.	9	.	.	Atlas-SNP
OR5D14	219436	hgsc.bcm.edu	hg19	11	55563231	55563231	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	OR5D14	NM_001004735	exon1	c.A200C	p.H67P	TTAGTCACCTCTC	.	75.0	40.0	78.0	0.0	.	116	.	.	Atlas-SNP
MS4A6E	245802	hgsc.bcm.edu	hg19	11	60107402	60107402	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	MS4A6E	NM_139249	exon3	c.G418C	p.V140L	ACTGCTGTGCTGC	.	42.0	18.0	44.0	0.0	.	22	.	.	Atlas-SNP
GAL3ST3	89792	hgsc.bcm.edu	hg19	11	65810480	65810480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	GAL3ST3	NM_033036	exon3	c.C794T	p.A265V	AGCTTGGCGTAGA	.	51.0	25.0	35.0	0.0	.	40	.	.	Atlas-SNP
SPTBN2	6712	hgsc.bcm.edu	hg19	11	66456306	66456306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	SPTBN2	NM_006946	exon30	c.G6049T	p.V2017L	CAAACACAAGCAC	.	33.0	10.0	33.0	0.0	.	188	.	.	Atlas-SNP
DLG2	1740	hgsc.bcm.edu	hg19	11	84996347	84996347	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	DLG2	NM_001142699	exon4	c.G103C	p.E35Q	CTTCTTCTATCTT	.	82.0	36.0	64.0	0.0	.	448	.	.	Atlas-SNP
CACNA1C	775	hgsc.bcm.edu	hg19	12	2613673	2613673	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	CACNA1C	NM_001167623	exon8	c.C1185T	p.F395F	CTTTTTCGTTCTA	.	139.0	56.0	119.0	0.0	.	1023	.	.	Atlas-SNP
DCN	1634	hgsc.bcm.edu	hg19	12	91552214	91552214	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	DCN,rectum,carcinoma,+2,1	DCN	NM_001920	exon4	c.C397T	p.R133X	AAAGTCGTTCCAA	.	116.0	42.0	114.0	0.0	.	61	.	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39435611	39435611	+	Silent	SNP	G	G	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	FREM2	NM_207361	exon15	c.G7563C	p.P2521P	AGAGCCGTTCTCA	.	57.0	30.0	43.0	0.0	.	385	.	.	Atlas-SNP
PHF11	51131	hgsc.bcm.edu	hg19	13	50092193	50092193	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	PHF11	NM_001040443	exon4	c.T364A	p.C122S	GTGGGATGTGATT	.	298.0	134.0	307.0	0.0	.	20	.	.	Atlas-SNP
PSMB11	122706	hgsc.bcm.edu	hg19	14	23512092	23512092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	PSMB11	NM_001099780	exon1	c.G658A	p.G220R	TATTCAGGGGGCT	.	42.0	20.0	70.0	0.0	.	40	.	.	Atlas-SNP
MYH6	4624	hgsc.bcm.edu	hg19	14	23869968	23869968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	MYH6,NS,malignant_melanoma,+1,1	MYH6	NM_002471	exon13	c.C1360T	p.R454C	ACTGGCGTGGCTG	.	107.0	51.0	108.0	0.0	.	274	.	.	Atlas-SNP
LRRC16B	90668	hgsc.bcm.edu	hg19	14	24530143	24530143	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	LRRC16B	NM_138360	exon26	c.C2198G	p.P733R	TGTTTCCCAGCCT	.	48.0	27.0	51.0	0.0	.	120	.	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64653174	64653174	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	SYNE2	NM_182914	exon97	c.G17589A	p.Q5863Q	GACTCAGAACTTG	.	159.0	65.0	152.0	0.0	.	577	.	.	Atlas-SNP
PLEKHH1	57475	hgsc.bcm.edu	hg19	14	68042127	68042127	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	PLEKHH1	NM_020715	exon15	c.A2107C	p.K703Q	CACTCCAAGGTGG	.	71.0	33.0	83.0	0.0	.	118	.	.	Atlas-SNP
SYNDIG1L	646658	hgsc.bcm.edu	hg19	14	74876360	74876360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	SYNDIG1L	NM_001105579	exon2	c.C88G	p.P30A	AGCTGGGTGGGGT	.	119.0	60.0	115.0	0.0	.	24	.	.	Atlas-SNP
NDN	4692	hgsc.bcm.edu	hg19	15	23932089	23932089	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	NDN	NM_002487	exon1	c.G276T	p.P92P	GGCTGGCGGTGCC	.	35.0	20.0	36.0	0.0	.	79	.	.	Atlas-SNP
NUSAP1	51203	hgsc.bcm.edu	hg19	15	41657598	41657598	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	NUSAP1	NM_016359	exon7	c.661-2A>T	.	CTCTTCAGCAGCA	.	68.0	31.0	41.0	0.0	.	32	.	.	Atlas-SNP
RCN2	5955	hgsc.bcm.edu	hg19	15	77236169	77236169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	RCN2	NM_001271837	exon5	c.A572G	p.E191G	TTGAAGAATTTAT	.	286.0	138.0	230.0	0.0	.	16	.	.	Atlas-SNP
NTRK3	4916	hgsc.bcm.edu	hg19	15	88476268	88476268	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	NTRK3	NM_001012338	exon16	c.C1864A	p.H622N	CTCCATGCTTCAT	.	78.0	28.0	95.0	0.0	.	587	.	.	Atlas-SNP
SOLH	6650	hgsc.bcm.edu	hg19	16	601629	601629	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	SOLH	NM_005632	exon9	c.G2310C	p.E770D	CAGTGAGGGTGTC	.	27.0	16.0	35.0	0.0	.	47	.	.	Atlas-SNP
ITGAD	3681	hgsc.bcm.edu	hg19	16	31422694	31422694	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	ITGAD	NM_005353	exon14	c.G1563A	p.G521G	CTTTGGGGCAGCC	.	112.0	56.0	100.0	0.0	.	154	.	.	Atlas-SNP
CNOT1	23019	hgsc.bcm.edu	hg19	16	58579334	58579334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	CNOT1	NM_206999	exon30	c.G4068T	p.Q1356H	GCTGTACTGTGGC	.	184.0	103.0	148.0	0.0	.	359	.	.	Atlas-SNP
TAT	6898	hgsc.bcm.edu	hg19	16	71604715	71604715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	TAT	NM_000353	exon8	c.A779G	p.Y260C	GGTTCATATTTGC	.	115.0	51.0	114.0	0.0	.	80	.	.	Atlas-SNP
C17orf66	256957	hgsc.bcm.edu	hg19	17	34192249	34192249	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	C17orf66	NM_152781	exon3	c.A290T	p.K97M	AACATCTTCTCAG	.	124.0	58.0	96.0	0.0	.	57	.	.	Atlas-SNP
KRTAP1-3	81850	hgsc.bcm.edu	hg19	17	39191019	39191019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	KRTAP1-3	NM_030966	exon1	c.A55G	p.T19A	CGCATGTCCCACT	.	138.0	99.0	99.0	0.0	.	18	.	.	Atlas-SNP
MPP3	4356	hgsc.bcm.edu	hg19	17	41898313	41898313	+	Silent	SNP	G	G	A	rs377033537	alternate_allele	TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	MPP3	NM_001932	exon11	c.C798T	p.D266D	GGGGTCGTCCTGG	.	153.0	41.0	99.0	0.0	.	42	.	.	Atlas-SNP
TBC1D16	125058	hgsc.bcm.edu	hg19	17	77921567	77921567	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	TBC1D16	NM_019020	exon9	c.C1605T	p.D535D	CACCAGGTCCGAC	.	126.0	47.0	98.0	0.0	.	48	.	.	Atlas-SNP
ZNF516	9658	hgsc.bcm.edu	hg19	18	74153982	74153982	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	ZNF516	NM_014643	exon3	c.G1029T	p.L343L	TGTAAACAGGTTC	.	48.0	17.0	42.0	0.0	.	102	.	.	Atlas-SNP
ARRDC5	645432	hgsc.bcm.edu	hg19	19	4896768	4896768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	ARRDC5	NM_001080523	exon2	c.T416C	p.M139T	CTGCCCATGCAGG	.	158.0	77.0	167.0	0.0	.	19	.	.	Atlas-SNP
ZNF177	7730	hgsc.bcm.edu	hg19	19	9488995	9488995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	ZNF177	NM_003451	exon5	c.C8A	p.A3E	TGGCTGCAGGGTG	.	296.0	135.0	289.0	0.0	.	57	.	.	Atlas-SNP
ZNF93	81931	hgsc.bcm.edu	hg19	19	20044590	20044590	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	ZNF93	NM_031218	exon4	c.A826T	p.K276X	AAACATAAGAAAA	.	76.0	41.0	66.0	0.0	.	81	.	.	Atlas-SNP
ZBTB32	27033	hgsc.bcm.edu	hg19	19	36207625	36207625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	ZBTB32	NM_014383	exon6	c.C1435A	p.P479T	ACCTCTCCCTGTT	.	33.0	13.0	38.0	0.0	.	33	.	.	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	hg19	19	36213570	36213570	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	MLL4	NM_014727	exon5	c.C2672G	p.P891R	ATGTCCCTCGCCT	.	79.0	41.0	81.0	0.0	.	229	.	.	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	hg19	19	36219050	36219050	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	MLL4	NM_014727	exon19	c.C4549T	p.R1517X	TACTGGCGACGGA	.	63.0	29.0	61.0	0.0	.	229	.	.	Atlas-SNP
GLTSCR1	29998	hgsc.bcm.edu	hg19	19	48204913	48204913	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	GLTSCR1	NM_015711	exon15	c.C3924T	p.L1308L	CGGGCTCAAGCTC	.	164.0	83.0	156.0	0.0	.	79	.	.	Atlas-SNP
ZNF816-ZNF321P	100529240	hgsc.bcm.edu	hg19	19	53432594	53432594	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	.	NM_001202473	exon4	c.G264A	p.G88G	CAATGTCCCTGTG	.	64.0	21.0	64.0	0.0	.	.	.	.	Atlas-SNP
ZNF835	90485	hgsc.bcm.edu	hg19	19	57175001	57175001	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	ZNF835	NM_001005850	exon2	c.T1566C	p.C522C	CTGTTGACAGGTT	.	107.0	40.0	109.0	0.0	.	106	.	.	Atlas-SNP
CLDN8	9073	hgsc.bcm.edu	hg19	21	31587841	31587841	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	CLDN8	NM_199328	exon1	c.A403C	p.I135L	CAGGGATGAGCAC	.	69.0	31.0	67.0	0.0	.	40	.	.	Atlas-SNP
RUNX1	861	hgsc.bcm.edu	hg19	21	36193995	36193995	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	RUNX1	NM_001122607	exon6	c.725-2A>T	.	TTCCTCTGAGGGA	.	122.0	55.0	128.0	0.0	.	687	.	.	Atlas-SNP
SGSM1	129049	hgsc.bcm.edu	hg19	22	25251281	25251281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	SGSM1	NM_001098497	exon7	c.A553G	p.M185V	ACCAAGATGAAGA	.	61.0	26.0	61.0	0.0	.	150	.	.	Atlas-SNP
PLXNB2	23654	hgsc.bcm.edu	hg19	22	50719562	50719562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	PLXNB2	NM_012401	exon23	c.G3719T	p.G1240V	TCCAGGCCCTCCA	.	54.0	26.0	56.0	0.0	.	172	.	.	Atlas-SNP
SSX7	280658	hgsc.bcm.edu	hg19	X	52682011	52682011	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	SSX7	NM_173358	exon3	c.C93A	p.Y31X	AGAGAAGTATTTG	.	736.0	340.0	695.0	0.0	.	34	.	.	Atlas-SNP
SMC1A	8243	hgsc.bcm.edu	hg19	X	53442011	53442011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	SMC1A	NM_006306	exon2	c.C217T	p.P73S	CAGCTGGCTTGCC	.	117.0	46.0	104.0	0.0	.	112	.	.	Atlas-SNP
DGAT2L6	347516	hgsc.bcm.edu	hg19	X	69424178	69424178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	DGAT2L6	NM_198512	exon6	c.C671A	p.S224Y	CATATTCCTTTGG	.	243.0	121.0	237.0	0.0	.	40	.	.	Atlas-SNP
CHIC1	53344	hgsc.bcm.edu	hg19	X	72783364	72783364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	CHIC1	NM_001039840	exon1	c.C244T	p.R82W	CATCTGCGGAGAT	.	210.0	90.0	198.0	0.0	.	13	.	.	Atlas-SNP
ARMCX6	54470	hgsc.bcm.edu	hg19	X	100871397	100871397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	ARMCX6	NM_001184768	exon4	c.G214A	p.D72N	CCCCATCCTCAGT	.	99.0	42.0	91.0	0.0	.	21	.	.	Atlas-SNP
COL4A5	1287	hgsc.bcm.edu	hg19	X	107821329	107821329	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	COL4A5	NM_000495	exon12	c.C667T	p.Q223X	AATTTCCAGGGAC	.	548.0	233.0	490.0	0.0	.	262	.	.	Atlas-SNP
GUCY2F	2986	hgsc.bcm.edu	hg19	X	108718938	108718938	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	GUCY2F	NM_001522	exon2	c.G228A	p.A76A	TAATCGCGCAGCA	.	392.0	181.0	420.0	0.0	.	178	.	.	Atlas-SNP
TENM1	10178	hgsc.bcm.edu	hg19	X	123870898	123870898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	.	NM_001163278	exon4	c.C685A	p.P229T	CAGCTGGGCTGGG	.	89.0	45.0	79.0	0.0	.	.	.	.	Atlas-SNP
RAB39B	116442	hgsc.bcm.edu	hg19	X	154490389	154490389	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	RAB39B	NM_171998	exon2	c.A341T	p.Y114F	ATTTGGTAGGGCT	.	68.0	36.0	64.0	0.0	.	37	.	.	Atlas-SNP
COX3	5742	hgsc.bcm.edu	hg19	MT	9295	9295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	.	ENST00000362079	exon1	c.G89A	p.G30D	CCTCCGGCCTAGC	.	19.0	5.0	5.0	0.0	.	.	.	.	Atlas-SNP
ND4	0	hgsc.bcm.edu	hg19	MT	10911	10911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	.	ENST00000361381	exon1	c.G152A	p.S51N	TATTTAGCTGTTC	.	15.0	15.0	7.0	0.0	.	.	.	.	Atlas-SNP
CMAHP	8418	hgsc.bcm.edu	hg19	6	25108883	25108883	+	RNA	DEL	C	C	-	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	CMAHP	.	.	.	.	.	.	92.0	45.0	92.0	0.0	.	6	.	.	Atlas-INDEL
SMIM20	0	hgsc.bcm.edu	hg19	4	25930802	25930802	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	.	NM_001145432	exon3	c.192delT	p.F64fs	.	.	122.0	49.0	68.0	0.0	.	.	.	.	Atlas-INDEL
RCOR3	55758	hgsc.bcm.edu	hg19	1	211486101	211486105	+	Frame_Shift_Del	DEL	ATGTA	ATGTA	-	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	ATGTA	ATGTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	RCOR3	NM_001136225	exon11	c.1114_1118del	p.372_373del	.	.	252.0	77.0	154.0	0.0	.	51	.	.	Atlas-INDEL
MYO9B	4650	hgsc.bcm.edu	hg19	19	17298768	17298768	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	MYO9B	NM_004145	exon19	c.2601delG	p.E867fs	.	.	54.0	34.0	48.0	0.0	.	264	.	.	Atlas-INDEL
KRT2	3849	hgsc.bcm.edu	hg19	12	53045637	53045638	+	In_Frame_Ins	INS	-	-	CAAAGCCGCTGCCGCCTC	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.,2	KRT2	NM_000423	exon1	c.290_291insGAGGCGGCAGCGGCTTTG	p.G97delinsGGGSGFG	.	.	156.0	71.0	153.0	0.0	.	94	.	.	Atlas-INDEL
ZNF506	440515	hgsc.bcm.edu	hg19	19	19905517	19905544	+	Frame_Shift_Del	DEL	TCCAGTATGAATTATCTTATGTTCAGTT	TCCAGTATGAATTATCTTATGTTCAGTT	-	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	TCCAGTATGAATTATCTTATGTTCAGTT	TCCAGTATGAATTATCTTATGTTCAGTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	ZNF506	NM_001099269	exon4	c.1153_1180del	p.385_394del	.	.	48.0	16.0	60.0	0.0	.	36	.	.	Atlas-INDEL
ESPN	83715	hgsc.bcm.edu	hg19	1	6505818	6505819	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-AAD0-01A-11D-A40R-10	TCGA-DD-AAD0-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4463ea73-26d1-4e24-a97d-0302bb2dd21b	15b4a966-4206-4903-8558-da5d6cb55540	.	ESPN	NM_031475	exon7	c.1287_1288insC	p.T429fs	.	.	61.0	10.0	65.0	0.0	.	32	.	.	Atlas-INDEL
