Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ERRFI1	54206	hgsc.bcm.edu	hg19	1	8073367	8073367	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	ERRFI1	NM_018948	exon4	c.G1292A	p.G431D	GATATACCGCAGT	.	126.0	30.0	170.0	0.0	.	42	.	.	Atlas-SNP
VPS13D	55187	hgsc.bcm.edu	hg19	1	12336568	12336568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	VPS13D	NM_015378	exon19	c.A2923G	p.I975V	CGGTACATTTCTG	.	74.0	20.0	82.0	0.0	.	316	.	.	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	hg19	1	39750866	39750866	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	MACF1	NM_012090	exon13	c.C1258A	p.R420R	TCACTTCGGCCGG	.	184.0	38.0	173.0	0.0	.	909	.	.	Atlas-SNP
USP24	23358	hgsc.bcm.edu	hg19	1	55619849	55619849	+	Silent	SNP	T	T	G	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	USP24	NM_015306	exon15	c.A1755C	p.A585A	TTTCACTGCATAT	.	93.0	22.0	136.0	0.0	.	323	.	.	Atlas-SNP
PTGER3	5733	hgsc.bcm.edu	hg19	1	71512635	71512635	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	PTGER3	NM_001126044	exon1	c.T626A	p.F209Y	CTGATGAAGCACC	.	109.0	21.0	143.0	0.0	.	246	.	.	Atlas-SNP
WARS2	10352	hgsc.bcm.edu	hg19	1	119683215	119683215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	WARS2	NM_015836	exon1	c.C53A	p.A18E	TGAAGTGCCCGGA	.	76.0	12.0	77.0	0.0	.	69	.	.	Atlas-SNP
NUF2	83540	hgsc.bcm.edu	hg19	1	163318764	163318764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	NUF2	NM_145697	exon13	c.G1154A	p.G385D	AAAGAGGTGCTGT	.	658.0	122.0	596.0	0.0	.	138	.	.	Atlas-SNP
TOR3A	64222	hgsc.bcm.edu	hg19	1	179054765	179054765	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	TOR3A	NM_022371	exon3	c.T376G	p.L126V	TTAGGCTTAGAGT	.	133.0	44.0	133.0	0.0	.	28	.	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	216462647	216462647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	USH2A	NM_007123	exon11	c.G1946A	p.R649K	CCATTTCTAGTGC	.	144.0	22.0	125.0	0.0	.	1168	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237754010	237754010	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	RYR2	NM_001035	exon31	c.A3878C	p.Q1293P	GTTCTCAGAACAG	.	71.0	13.0	85.0	0.0	.	1273	.	.	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	hg19	1	245849955	245849955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	KIF26B	NM_018012	exon12	c.T3670C	p.S1224P	CTGGCCTCGGGCT	.	62.0	10.0	97.0	0.0	.	343	.	.	Atlas-SNP
ZNF695	57116	hgsc.bcm.edu	hg19	1	247150827	247150827	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	ZNF695	NM_020394	exon4	c.C990A	p.G330G	GACTTTGCCACAT	.	114.0	12.0	113.0	0.0	.	55	.	.	Atlas-SNP
OR2T2	401992	hgsc.bcm.edu	hg19	1	248616773	248616773	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	OR2T2	NM_001004136	exon1	c.T675A	p.T225T	CCTGACTGTCCAC	.	431.0	53.0	357.0	0.0	.	73	.	.	Atlas-SNP
C2orf71	388939	hgsc.bcm.edu	hg19	2	29296299	29296299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	C2orf71	NM_001029883	exon1	c.A829G	p.K277E	GCAGCTTGCTGAC	.	51.0	12.0	84.0	0.0	.	146	.	.	Atlas-SNP
AFTPH	54812	hgsc.bcm.edu	hg19	2	64800193	64800193	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	AFTPH	NM_017657	exon6	c.T2385A	p.D795E	ATCTGATCAGTTC	.	310.0	28.0	337.0	0.0	.	117	.	.	Atlas-SNP
GLI2	2736	hgsc.bcm.edu	hg19	2	121736076	121736076	+	Missense_Mutation	SNP	C	C	T	rs121917708	alternate_allele	TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	GLI2	NM_005270	exon9	c.C1435T	p.R479W	TGCACGCGGGAGC	.	374.0	76.0	383.0	0.0	.	187	.	.	Atlas-SNP
ARHGAP15	55843	hgsc.bcm.edu	hg19	2	144193255	144193255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	ARHGAP15	NM_018460	exon7	c.C560A	p.A187E	AAAATGCAATTGA	.	54.0	6.0	84.0	0.0	.	99	.	.	Atlas-SNP
LY75	4065	hgsc.bcm.edu	hg19	2	160708804	160708804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	LY75	NM_002349	exon21	c.G2791A	p.E931K	ATTTTTCACAGAT	.	158.0	30.0	177.0	0.0	.	151	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168101315	168101315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	XIRP2	NM_152381	exon9	c.C3413A	p.T1138N	TTGATACCATAAA	.	331.0	51.0	314.0	0.0	.	914	.	.	Atlas-SNP
ZNF385B	151126	hgsc.bcm.edu	hg19	2	180634264	180634264	+	Silent	SNP	G	G	A	rs370441083		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	ZNF385B	NM_152520	exon3	c.C219T	p.P73P	CTGGGCGGGTGGT	.	74.0	7.0	87.0	0.0	.	68	.	.	Atlas-SNP
ORC2	4999	hgsc.bcm.edu	hg19	2	201798638	201798638	+	Silent	SNP	A	A	G	rs149149549		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	ORC2	NM_006190	exon10	c.T768C	p.D256D	TGTTCTATCAGAG	.	123.0	8.0	128.0	0.0	.	48	.	A|1.000;G|0.000	Atlas-SNP
C2orf80	389073	hgsc.bcm.edu	hg19	2	209045541	209045541	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	C2orf80	NM_001099334	exon7	c.295-1G>T	.	ACTGTTCTGTTAA	.	270.0	56.0	267.0	0.0	.	19	.	.	Atlas-SNP
ITM2C	81618	hgsc.bcm.edu	hg19	2	231742197	231742197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	ITM2C	NM_030926	exon5	c.G644A	p.G215E	CCCTGGGGTCCTT	.	200.0	11.0	192.0	0.0	.	17	.	.	Atlas-SNP
CHRND	1144	hgsc.bcm.edu	hg19	2	233392134	233392134	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	CHRND	NM_000751	exon3	c.T222A	p.T74T	CCTCACTACCAAT	.	118.0	50.0	107.0	0.0	.	67	.	.	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	hg19	2	238296564	238296564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	COL6A3,colon,carcinoma,0,1	COL6A3	NM_004369	exon4	c.G973A	p.A325T	CAAGGGCGAGGCC	.	202.0	10.0	224.0	0.0	.	608	.	.	Atlas-SNP
GLYCTK	132158	hgsc.bcm.edu	hg19	3	52324605	52324605	+	Silent	SNP	C	C	T	rs374934931		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	GLYCTK	NM_001144951	exon2	c.C247T	p.L83L	CTCTACCTGGTGG	.	92.0	13.0	116.0	0.0	.	30	.	.	Atlas-SNP
SEMA3G	56920	hgsc.bcm.edu	hg19	3	52471666	52471666	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	SEMA3G	NM_020163	exon15	c.T1755A	p.L585L	TGCCACAAGTCCC	.	147.0	41.0	149.0	0.0	.	58	.	.	Atlas-SNP
GPR149	344758	hgsc.bcm.edu	hg19	3	154146848	154146848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	GPR149,NS,carcinoma,0,1	GPR149	NM_001038705	exon1	c.G557T	p.C186F	CTGGAGCAGTCCA	.	140.0	12.0	187.0	0.0	.	134	.	.	Atlas-SNP
TTC14	151613	hgsc.bcm.edu	hg19	3	180320103	180320103	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	TTC14	NM_001042601	exon1	c.C54T	p.L18L	TTTGCTCTCTCTA	.	55.0	9.0	40.0	0.0	.	112	.	.	Atlas-SNP
OPA1	4976	hgsc.bcm.edu	hg19	3	193376712	193376712	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	OPA1	NM_130837	exon24	c.A2368T	p.I790L	CGATCCATATCTG	.	110.0	33.0	97.0	0.0	.	79	.	.	Atlas-SNP
TNIP2	79155	hgsc.bcm.edu	hg19	4	2746185	2746185	+	Missense_Mutation	SNP	G	G	A	rs145123249	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	TNIP2	NM_024309	exon5	c.C955T	p.R319W	GAGCCCGTTCCCG	.	93.0	7.0	116.0	0.0	.	28	.	G|1.000;T|0.000	Atlas-SNP
NPFFR2	10886	hgsc.bcm.edu	hg19	4	72897911	72897911	+	Missense_Mutation	SNP	G	G	A	rs200084669	by1000genomes;alternate_allele	TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	NPFFR2,NS,carcinoma,0,1	NPFFR2	NM_004885	exon1	c.G293A	p.R98Q	CTCGCCGGGAGAG	.	236.0	19.0	331.0	2.0	.	98	.	G|1.000;C|0.000	Atlas-SNP
PDLIM5	10611	hgsc.bcm.edu	hg19	4	95583576	95583576	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	PDLIM5	NM_001256426	exon16	c.A1676G	p.Y559C	CAGATTATTATGC	.	50.0	10.0	56.0	0.0	.	76	.	.	Atlas-SNP
EGF	1950	hgsc.bcm.edu	hg19	4	110865040	110865040	+	Silent	SNP	A	A	G	rs369090159		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	EGF	NM_001963	exon4	c.A552G	p.R184R	TTATAGAGCAGAT	.	193.0	34.0	188.0	0.0	.	113	.	.	Atlas-SNP
PLRG1	5356	hgsc.bcm.edu	hg19	4	155462030	155462030	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	PLRG1	NM_002669	exon9	c.T744C	p.T248T	CCGCACAGTACTA	.	152.0	26.0	178.0	0.0	.	43	.	.	Atlas-SNP
CDH18	1016	hgsc.bcm.edu	hg19	5	19473363	19473363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	CDH18	NM_004934	exon13	c.G2345T	p.G782V	ATTTCTCCATAGA	.	165.0	22.0	177.0	0.0	.	561	.	.	Atlas-SNP
NIPBL	25836	hgsc.bcm.edu	hg19	5	37048674	37048674	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	NIPBL	NM_015384	exon39	c.A6660G	p.L2220L	TATTTTATCTGAT	.	535.0	118.0	551.0	0.0	.	513	.	.	Atlas-SNP
BDP1	55814	hgsc.bcm.edu	hg19	5	70806321	70806321	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	BDP1	NM_018429	exon17	c.G3402A	p.V1134V	AGAGGTGATTGAT	.	243.0	58.0	242.0	0.0	.	204	.	.	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	hg19	5	167689579	167689579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	.	NM_001122679	exon29	c.G8062A	p.D2688N	GTCCTGGACCAGG	.	134.0	14.0	156.0	0.0	.	.	.	.	Atlas-SNP
SH3PXD2B	285590	hgsc.bcm.edu	hg19	5	171766062	171766062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	SH3PXD2B	NM_001017995	exon13	c.G2047T	p.G683W	CCTCCCCATCCAA	.	90.0	13.0	97.0	0.0	.	91	.	.	Atlas-SNP
HK3	3101	hgsc.bcm.edu	hg19	5	176310869	176310869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	HK3	NM_002115	exon15	c.C1955T	p.A652V	TCCACTGCCTGCA	.	103.0	20.0	85.0	0.0	.	210	.	.	Atlas-SNP
KIAA0319	9856	hgsc.bcm.edu	hg19	6	24566957	24566957	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	KIAA0319	NM_001168377	exon14	c.A2160T	p.R720S	CCGGGCTCTGGGA	.	70.0	12.0	70.0	0.0	.	117	.	.	Atlas-SNP
BTN3A3	10384	hgsc.bcm.edu	hg19	6	26452498	26452498	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	BTN3A3	NM_006994	exon11	c.G1614A	p.P538P	GACCCCGGGCTTA	.	65.0	11.0	80.0	0.0	.	56	.	.	Atlas-SNP
OR14J1	442191	hgsc.bcm.edu	hg19	6	29274701	29274701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	OR14J1	NM_030946	exon1	c.T235C	p.S79P	CCCCAGTCCATTG	.	149.0	25.0	149.0	0.0	.	43	.	.	Atlas-SNP
NOTCH4	4855	hgsc.bcm.edu	hg19	6	32182001	32182001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	NOTCH4	NM_004557	exon13	c.G2053T	p.G685W	CTGGCCCCGTCCA	.	134.0	23.0	135.0	0.0	.	201	.	.	Atlas-SNP
PTCHD4	442213	hgsc.bcm.edu	hg19	6	47846992	47846992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	.	NM_001013732	exon3	c.T1588C	p.W530R	TGTTCCAGTACTC	.	57.0	7.0	63.0	0.0	.	.	.	.	Atlas-SNP
SLC2A12	154091	hgsc.bcm.edu	hg19	6	134323190	134323190	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	SLC2A12	NM_145176	exon4	c.A1645C	p.I549L	CAGGTATAAACAT	.	83.0	14.0	81.0	0.0	.	43	.	.	Atlas-SNP
PACRG	135138	hgsc.bcm.edu	hg19	6	163735950	163735950	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	PACRG	NM_152410	exon7	c.C822T	p.Y274Y	GCGCTACGGAGGA	.	278.0	62.0	256.0	0.0	.	48	.	.	Atlas-SNP
HOXA6	3203	hgsc.bcm.edu	hg19	7	27187096	27187096	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	HOXA6	NM_024014	exon1	c.G273T	p.S91S	ACTGCCCGAGGGC	.	111.0	25.0	142.0	0.0	.	25	.	.	Atlas-SNP
ABCB1	5243	hgsc.bcm.edu	hg19	7	87179184	87179184	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	ABCB1	NM_000927	exon14	c.A1537T	p.I513F	TCATGATAAAGTC	.	81.0	16.0	111.0	0.0	.	263	.	.	Atlas-SNP
PLXNA4	91584	hgsc.bcm.edu	hg19	7	132192559	132192559	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	PLXNA4	NM_001105543	exon2	c.T894A	p.I298I	ACAGCCAATGGGC	.	90.0	11.0	105.0	0.0	.	873	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	2800024	2800024	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	CSMD1_ENST00000537824,NS,malignant_melanoma,0,4	CSMD1	NM_033225	exon69	c.C10505A	p.S3502X	AACCCTGATAAAA	.	77.0	18.0	109.0	0.0	.	1469	.	.	Atlas-SNP
DLC1	10395	hgsc.bcm.edu	hg19	8	12957624	12957624	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	DLC1,bladder,carcinoma,0,3	DLC1	NM_182643	exon9	c.G2222C	p.S741T	CTGCTGCTGGTCT	.	39.0	3.0	51.0	2.0	.	411	.	.	Atlas-SNP
KAT6A	7994	hgsc.bcm.edu	hg19	8	41805294	41805294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	.	NM_001099412	exon12	c.G1877T	p.C626F	AGGTGGCAGCCCT	.	157.0	20.0	189.0	0.0	.	.	.	.	Atlas-SNP
PPP1R42	286187	hgsc.bcm.edu	hg19	8	67929857	67929857	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	PPP1R42	NM_001013626	exon2	c.A126G	p.A42A	TACAATTGCATCT	.	122.0	6.0	79.0	0.0	.	2	.	.	Atlas-SNP
C8orf76	84933	hgsc.bcm.edu	hg19	8	124253528	124253528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	C8orf76	NM_032847	exon1	c.G59T	p.R20M	TCCGGCCTCTCCT	.	353.0	137.0	201.0	0.0	.	26	.	.	Atlas-SNP
FER1L6	654463	hgsc.bcm.edu	hg19	8	125076745	125076745	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	FER1L6	NM_001039112	exon26	c.C3486G	p.D1162E	CCCTGACTCATCC	.	317.0	28.0	193.0	0.0	.	268	.	.	Atlas-SNP
ADCY8	114	hgsc.bcm.edu	hg19	8	132052123	132052123	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	ADCY8	NM_001115	exon1	c.A457T	p.I153F	GGAAAATGACCCC	.	195.0	19.0	140.0	0.0	.	291	.	.	Atlas-SNP
KCNQ3	3786	hgsc.bcm.edu	hg19	8	133152405	133152405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	KCNQ3	NM_004519	exon11	c.A1486G	p.M496V	CCGCCATGGGGTC	.	73.0	17.0	29.0	0.0	.	164	.	.	Atlas-SNP
MPDZ	8777	hgsc.bcm.edu	hg19	9	13133827	13133827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	MPDZ	NM_003829	exon32	c.C4460T	p.P1487L	ACCTTGGGAAGCT	.	128.0	23.0	156.0	0.0	.	324	.	.	Atlas-SNP
FAM205A	259308	hgsc.bcm.edu	hg19	9	34725939	34725939	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	FAM205A	NM_001141917	exon4	c.T1298A	p.F433Y	CCACAGAATAGCT	.	169.0	17.0	217.0	0.0	.	45	.	.	Atlas-SNP
GCNT1	2650	hgsc.bcm.edu	hg19	9	79117570	79117570	+	Silent	SNP	C	C	T	rs139014455		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	GCNT1	NM_001490	exon4	c.C273T	p.D91D	ACCTGACGACTAT	.	161.0	33.0	167.0	0.0	.	52	.	C|1.000;T|0.000	Atlas-SNP
GABBR2	9568	hgsc.bcm.edu	hg19	9	101056112	101056112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	GABBR2	NM_005458	exon18	c.C2615A	p.S872Y	GTTCGAGAGGGCT	.	82.0	15.0	82.0	0.0	.	126	.	.	Atlas-SNP
GABBR2	9568	hgsc.bcm.edu	hg19	9	101470749	101470749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	GABBR2	NM_005458	exon1	c.G271A	p.E91K	GTGACTCGTTGCG	.	68.0	8.0	64.0	0.0	.	126	.	.	Atlas-SNP
SUSD1	64420	hgsc.bcm.edu	hg19	9	114840897	114840897	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	SUSD1	NM_022486	exon12	c.G1674A	p.P558P	GGTACCCGGACGT	.	167.0	42.0	185.0	0.0	.	51	.	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	16982125	16982125	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	CUBN	NM_001081	exon37	c.C5454A	p.L1818L	ATAATTGAGAGGG	.	162.0	21.0	157.0	0.0	.	515	.	.	Atlas-SNP
JMJD1C	221037	hgsc.bcm.edu	hg19	10	64974046	64974046	+	Silent	SNP	A	A	C	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	JMJD1C	NM_032776	exon8	c.T1881G	p.L627L	AGTATTAAGTTTA	.	69.0	15.0	114.0	0.0	.	347	.	.	Atlas-SNP
NUDT13	25961	hgsc.bcm.edu	hg19	10	74874164	74874164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	NUDT13	NM_015901	exon2	c.T41C	p.F14S	AATTTTTTTGGTG	.	84.0	8.0	63.0	0.0	.	16	.	.	Atlas-SNP
CPEB3	22849	hgsc.bcm.edu	hg19	10	93999237	93999237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	CPEB3	NM_014912	exon2	c.C871T	p.P291S	TGAGCGGCGAGAT	.	196.0	40.0	270.0	0.0	.	43	.	.	Atlas-SNP
SFRP5	6425	hgsc.bcm.edu	hg19	10	99527515	99527515	+	Missense_Mutation	SNP	C	C	T	rs144307831		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	SFRP5	NM_003015	exon3	c.G710A	p.R237H	TCCTTGCGCTTCA	.	69.0	14.0	83.0	0.0	.	32	.	C|1.000;T|0.000	Atlas-SNP
LZTS2	84445	hgsc.bcm.edu	hg19	10	102766667	102766667	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	LZTS2	NM_032429	exon5	c.G1752T	p.R584R	GCAGCGGGAGCGG	.	138.0	9.0	185.0	0.0	.	57	.	.	Atlas-SNP
DNHD1	144132	hgsc.bcm.edu	hg19	11	6578767	6578767	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	DNHD1	NM_144666	exon25	c.A8242G	p.S2748G	GATCCAAGTCTAA	.	108.0	11.0	136.0	0.0	.	198	.	.	Atlas-SNP
MICAL2	9645	hgsc.bcm.edu	hg19	11	12237867	12237867	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	MICAL2_ENST00000379612,NS,carcinoma,0,2	MICAL2	NM_014632	exon8	c.948+1G>T	.	ATTAACGTACGTA	.	73.0	12.0	50.0	0.0	.	114	.	.	Atlas-SNP
TSG101	7251	hgsc.bcm.edu	hg19	11	18503415	18503415	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	TSG101	NM_006292	exon9	c.C845G	p.A282G	ACCTCGGCCTGAA	.	59.0	10.0	71.0	0.0	.	43	.	.	Atlas-SNP
SLC17A6	57084	hgsc.bcm.edu	hg19	11	22364853	22364853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	SLC17A6	NM_020346	exon3	c.G400A	p.G134S	TTTTGGGGCTACA	.	87.0	29.0	92.0	0.0	.	135	.	.	Atlas-SNP
OR5J2	282775	hgsc.bcm.edu	hg19	11	55944930	55944930	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	OR5J2,NS,carcinoma,0,1	OR5J2	NM_001005492	exon1	c.G837A	p.T279T	CTATACGCTAGGG	.	42.0	7.0	55.0	0.0	.	98	.	.	Atlas-SNP
MRPL48	51642	hgsc.bcm.edu	hg19	11	73555916	73555916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	MRPL48	NM_016055	exon5	c.G266A	p.G89E	AATATGGGGTTTT	.	112.0	38.0	105.0	0.0	.	16	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103191757	103191757	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	DYNC2H1	NM_001080463	exon82	c.11747-1G>T	.	ATTATAGGTGCCA	.	179.0	32.0	185.0	0.0	.	246	.	.	Atlas-SNP
PHLDB1	23187	hgsc.bcm.edu	hg19	11	118502074	118502074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	PHLDB1	NM_001144758	exon7	c.G1978A	p.A660T	GCAGGGGCCTCTG	.	86.0	18.0	91.0	0.0	.	103	.	.	Atlas-SNP
LAG3	3902	hgsc.bcm.edu	hg19	12	6887023	6887023	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	LAG3	NM_002286	exon7	c.T1367G	p.L456R	TCATCCTTGGTGT	.	26.0	7.0	42.0	0.0	.	35	.	.	Atlas-SNP
ITPR2	3709	hgsc.bcm.edu	hg19	12	26709308	26709308	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	ITPR2	NM_002223	exon36	c.G4822C	p.D1608H	CTACATCCTAGGG	.	58.0	8.0	80.0	0.0	.	270	.	.	Atlas-SNP
SLC38A2	54407	hgsc.bcm.edu	hg19	12	46764378	46764378	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	SLC38A2	NM_018976	exon4	c.A231G	p.V77V	ATTAAATACTGAC	.	183.0	40.0	200.0	0.0	.	36	.	.	Atlas-SNP
CERS5	91012	hgsc.bcm.edu	hg19	12	50524462	50524462	+	Missense_Mutation	SNP	G	G	A	rs373121500		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	LASS5,colon,carcinoma,0,1	.	NM_147190	exon10	c.C1045T	p.R349C	CACTGCGATCATC	.	58.0	14.0	51.0	0.0	.	.	.	.	Atlas-SNP
ZDHHC17	23390	hgsc.bcm.edu	hg19	12	77208983	77208983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	ZDHHC17	NM_015336	exon6	c.A601G	p.T201A	TATAGAACACATA	.	93.0	22.0	94.0	0.0	.	45	.	.	Atlas-SNP
ANO4	121601	hgsc.bcm.edu	hg19	12	101381411	101381411	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	ANO4	NM_178826	exon7	c.T592A	p.C198S	AATGACTGCTACA	.	67.0	17.0	69.0	0.0	.	183	.	.	Atlas-SNP
NOS1	4842	hgsc.bcm.edu	hg19	12	117681160	117681160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	NOS1	NM_001204218	exon20	c.C3006A	p.S1002R	CTTCCAGCTGCGA	.	116.0	7.0	109.0	0.0	.	240	.	.	Atlas-SNP
WSB2	55884	hgsc.bcm.edu	hg19	12	118474281	118474281	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	WSB2	NM_018639	exon6	c.T695G	p.I232S	TTCCGAATTAACG	.	106.0	22.0	116.0	0.0	.	32	.	.	Atlas-SNP
CDH24	64403	hgsc.bcm.edu	hg19	14	23524786	23524786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	CDH24	NM_022478	exon2	c.G157A	p.V53I	CAATGACAAAGAA	.	187.0	10.0	194.0	0.0	.	129	.	.	Atlas-SNP
DCAF5	8816	hgsc.bcm.edu	hg19	14	69520912	69520912	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	DCAF5	NM_003861	exon9	c.A2491C	p.N831H	TGTGGTTGGCACA	.	63.0	11.0	67.0	0.0	.	67	.	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28443868	28443868	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	HERC2	NM_004667	exon49	c.A7764C	p.E2588D	ATCACCTTCGCAC	.	187.0	32.0	170.0	0.0	.	501	.	.	Atlas-SNP
LTK	4058	hgsc.bcm.edu	hg19	15	41804103	41804103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	LTK	NM_001135685	exon5	c.C569T	p.A190V	ATCGCCGCGTGCT	.	83.0	6.0	83.0	0.0	.	117	.	.	Atlas-SNP
KIAA1199	57214	hgsc.bcm.edu	hg19	15	81221411	81221411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	KIAA1199	NM_018689	exon20	c.C2508A	p.S836R	GAACAGCTTGTTT	.	314.0	37.0	314.0	0.0	.	118	.	.	Atlas-SNP
WDR24	84219	hgsc.bcm.edu	hg19	16	735410	735410	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	WDR24	NM_032259	exon7	c.G1866A	p.A622A	GTAGAGCGCGTGT	.	125.0	8.0	139.0	0.0	.	111	.	.	Atlas-SNP
HIRIP3	8479	hgsc.bcm.edu	hg19	16	30005783	30005783	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	HIRIP3	NM_003609	exon4	c.A683C	p.E228A	TCCTCTTCACTCT	.	82.0	11.0	69.0	0.0	.	45	.	.	Atlas-SNP
GSE1	23199	hgsc.bcm.edu	hg19	16	85699912	85699912	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	.	NM_014615	exon13	c.C3089G	p.S1030X	ACGAGTCAGTGCT	.	136.0	45.0	189.0	0.0	.	.	.	.	Atlas-SNP
ACAP1	9744	hgsc.bcm.edu	hg19	17	7247924	7247924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	ACAP1	NM_014716	exon10	c.C811T	p.H271Y	GAAGGACATCTCT	.	60.0	5.0	70.0	0.0	.	66	.	.	Atlas-SNP
MYH8	4626	hgsc.bcm.edu	hg19	17	10298727	10298727	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	MYH8	NM_002472	exon34	c.T4685A	p.L1562Q	ATACGCAGAATCT	.	82.0	23.0	122.0	0.0	.	346	.	.	Atlas-SNP
MYH4	4622	hgsc.bcm.edu	hg19	17	10351286	10351286	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	MYH4	NM_017533	exon34	c.T4814A	p.L1605Q	GCATCCAGTGTAC	.	86.0	25.0	130.0	0.0	.	349	.	.	Atlas-SNP
PRPSAP2	5636	hgsc.bcm.edu	hg19	17	18827289	18827289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	PRPSAP2	NM_001243940	exon9	c.A796G	p.I266V	ATTGCCATCATCG	.	102.0	33.0	135.0	0.0	.	23	.	.	Atlas-SNP
USP22	23326	hgsc.bcm.edu	hg19	17	20924519	20924519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	USP22	NM_015276	exon3	c.G325A	p.G109S	AGATGCCTCCGTA	.	66.0	5.0	102.0	0.0	.	45	.	.	Atlas-SNP
TMIGD1	388364	hgsc.bcm.edu	hg19	17	28656398	28656398	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	TMIGD1	NM_206832	exon3	c.T232A	p.S78T	TTCCAGATTTCAA	.	112.0	25.0	133.0	0.0	.	38	.	.	Atlas-SNP
RHOT1	55288	hgsc.bcm.edu	hg19	17	30528018	30528018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	RHOT1	NM_001033568	exon14	c.G1144A	p.G382S	TATTTGGGCTATC	.	87.0	20.0	70.0	0.0	.	69	.	.	Atlas-SNP
KRTAP9-3	83900	hgsc.bcm.edu	hg19	17	39388885	39388885	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	KRTAP9-3	NM_031962	exon1	c.G132A	p.Q44Q	CTGCCAGCCTTGC	.	82.0	12.0	118.0	0.0	.	11	.	.	Atlas-SNP
BRCA1	672	hgsc.bcm.edu	hg19	17	41245524	41245524	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	BRCA1	NM_007300	exon10	c.C2024G	p.A675G	CCAGTTGCAGGTT	.	98.0	17.0	121.0	0.0	.	304	.	.	Atlas-SNP
UNC13D	201294	hgsc.bcm.edu	hg19	17	73830716	73830716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	UNC13D	NM_199242	exon22	c.G2074T	p.G692C	CCTGGCCTTGGTC	.	445.0	107.0	627.0	1.0	.	68	.	.	Atlas-SNP
EXOC7	23265	hgsc.bcm.edu	hg19	17	74085364	74085364	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	EXOC7	NM_001145297	exon9	c.C1092T	p.Y364Y	GTGGATGTAGGCA	.	70.0	9.0	67.0	0.0	.	47	.	.	Atlas-SNP
EMILIN2	84034	hgsc.bcm.edu	hg19	18	2885112	2885112	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	EMILIN2	NM_032048	exon3	c.T408A	p.P136P	TCGGCCTCGAAAC	.	105.0	22.0	90.0	0.0	.	97	.	.	Atlas-SNP
ANKRD12	23253	hgsc.bcm.edu	hg19	18	9254666	9254666	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	ANKRD12	NM_015208	exon9	c.A1401C	p.K467N	ACACAAACAGAAA	.	332.0	55.0	378.0	0.0	.	167	.	.	Atlas-SNP
RIT2	6014	hgsc.bcm.edu	hg19	18	40323617	40323617	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	RIT2	NM_002930	exon5	c.C495T	p.A165A	TCTGAGGGCTGCA	.	187.0	30.0	177.0	0.0	.	56	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9063744	9063744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	MUC16	NM_024690	exon3	c.C23702A	p.A7901E	ATTTCTGCTGATT	.	121.0	7.0	161.0	0.0	.	4315	.	.	Atlas-SNP
FCHO1	23149	hgsc.bcm.edu	hg19	19	17877522	17877522	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	FCHO1	NM_001161358	exon6	c.A239C	p.K80T	CGGACAAGCTGGC	.	137.0	25.0	155.0	0.0	.	69	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38376636	38376636	+	Missense_Mutation	SNP	C	C	T	rs373987886		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	WDR87	NM_031951	exon6	c.G7558A	p.V2520I	GGCTTACGTCTGC	.	116.0	28.0	160.0	0.0	.	191	.	.	Atlas-SNP
HNRNPL	3191	hgsc.bcm.edu	hg19	19	39329111	39329111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	HNRNPL	NM_001533	exon10	c.C1483A	p.R495S	GGATGCGGTTCTT	.	100.0	5.0	105.0	0.0	.	67	.	.	Atlas-SNP
CLASRP	11129	hgsc.bcm.edu	hg19	19	45567337	45567337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	CLASRP	NM_007056	exon12	c.A973G	p.K325E	GAGGAGAAGATCA	.	106.0	32.0	104.0	0.0	.	44	.	.	Atlas-SNP
PTPRH	5794	hgsc.bcm.edu	hg19	19	55715190	55715190	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	PTPRH	NM_002842	exon5	c.C846T	p.D282D	TACTCCGTCTTTC	.	147.0	9.0	127.0	0.0	.	139	.	.	Atlas-SNP
ZNF135	7694	hgsc.bcm.edu	hg19	19	58579350	58579350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	ZNF135	NM_007134	exon4	c.G1570A	p.G524S	GACTGCGGCAAGG	.	94.0	19.0	120.0	0.0	.	159	.	.	Atlas-SNP
NELFCD	51497	hgsc.bcm.edu	hg19	20	57568786	57568786	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	.	NM_198976	exon13	c.T1602A	p.T534T	GGACACTGACATT	.	85.0	16.0	86.0	0.0	.	.	.	.	Atlas-SNP
DIDO1	11083	hgsc.bcm.edu	hg19	20	61542449	61542449	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	DIDO1	NM_080797	exon3	c.G516T	p.R172R	CTGTTCCCGCTTC	.	64.0	19.0	98.0	0.0	.	321	.	.	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	hg19	21	47831466	47831466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	PCNT	NM_006031	exon28	c.G5479T	p.A1827S	CAGGGCGCAGAGG	.	101.0	25.0	142.0	0.0	.	283	.	.	Atlas-SNP
CARD10	29775	hgsc.bcm.edu	hg19	22	37887846	37887846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	CARD10	NM_014550	exon19	c.G2780T	p.R927L	ACACCCCGAGCAC	.	48.0	6.0	42.0	0.0	.	55	.	.	Atlas-SNP
BMX	660	hgsc.bcm.edu	hg19	X	15560110	15560110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	BMX	NM_001721	exon15	c.T1400C	p.L467P	GGAAACTCAGCCA	.	256.0	46.0	263.0	0.0	.	73	.	.	Atlas-SNP
NR0B1	190	hgsc.bcm.edu	hg19	X	30327407	30327407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	NR0B1	NM_000475	exon1	c.C74T	p.A25V	GGAGCCGCGCGCG	.	105.0	24.0	113.0	0.0	.	61	.	.	Atlas-SNP
COL4A5	1287	hgsc.bcm.edu	hg19	X	107824223	107824223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	COL4A5	NM_000495	exon16	c.G902T	p.G301V	AACCAGGCAAAGA	.	360.0	76.0	421.0	0.0	.	262	.	.	Atlas-SNP
SLC25A43	203427	hgsc.bcm.edu	hg19	X	118540512	118540512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	SLC25A43	NM_145305	exon2	c.T365C	p.I122T	CCACCATTGTAAC	.	210.0	46.0	198.0	0.0	.	29	.	.	Atlas-SNP
MCF2	4168	hgsc.bcm.edu	hg19	X	138686908	138686908	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	MCF2	NM_001171876	exon19	c.A1903G	p.I635V	AGAAAATGCTGTG	.	832.0	169.0	930.0	1.0	.	432	.	.	Atlas-SNP
ND2	0	hgsc.bcm.edu	hg19	MT	5038	5038	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	.	ENST00000361453	exon1	c.T569C	p.M190T	GATGAATAATAGC	.	36.0	4.0	23.0	0.0	.	.	.	.	Atlas-SNP
DSC2	1824	hgsc.bcm.edu	hg19	18	28662231	28662231	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	DSC2	NM_004949	exon9	c.1237delA	p.N413fs	.	.	129.0	17.0	107.0	0.0	.	168	.	.	Atlas-INDEL
PLG	5340	hgsc.bcm.edu	hg19	6	161127481	161127481	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	PLG	NM_000301	exon2	c.91delG	p.A31fs	.	.	614.0	134.0	582.0	0.0	.	150	.	.	Atlas-INDEL
BRD7	29117	hgsc.bcm.edu	hg19	16	50357551	50357552	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	BRD7	NM_013263	exon12	c.1390_1391del	p.464_464del	.	.	75.0	11.0	88.0	0.0	.	61	.	.	Atlas-INDEL
COL4A6	1288	hgsc.bcm.edu	hg19	X	107464546	107464546	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AAD1-01A-11D-A40R-10	TCGA-DD-AAD1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8179bebc-0b69-4345-9585-b23ec97837a0	2397526c-9196-4093-8c57-e47020e03b20	.	COL4A6	NM_001847	exon4	c.207delT	p.S69fs	.	.	194.0	25.0	191.0	0.0	.	270	.	.	Atlas-INDEL
