Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
VPS13D	55187	hgsc.bcm.edu	hg19	1	12336579	12336579	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	VPS13D	NM_015378	exon19	c.C2934T	p.L978L	TGTGCTCAAGGTG	.	38.0	19.0	92.0	0.0	.	316	.	.	Atlas-SNP
TMCO4	255104	hgsc.bcm.edu	hg19	1	20009838	20009838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	TMCO4	NM_181719	exon16	c.G1600A	p.A534T	CTGGGGCCAGCAA	.	93.0	48.0	192.0	0.0	.	46	.	.	Atlas-SNP
ASB17	127247	hgsc.bcm.edu	hg19	1	76397825	76397825	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	ASB17	NM_080868	exon1	c.T152A	p.L51Q	TTTGCCAGTGATC	.	110.0	43.0	170.0	0.0	.	53	.	.	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	hg19	1	94548954	94548954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	ABCA4	NM_000350	exon7	c.G812T	p.R271I	CAAGATCTCAGAT	.	49.0	11.0	70.0	0.0	.	275	.	.	Atlas-SNP
PAPPA2	60676	hgsc.bcm.edu	hg19	1	176762782	176762782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	PAPPA2	NM_020318	exon20	c.T5107C	p.W1703R	GAGCACTGGATGG	.	146.0	27.0	117.0	0.0	.	665	.	.	Atlas-SNP
COLGALT2	23127	hgsc.bcm.edu	hg19	1	183942764	183942764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	.	NM_015101	exon4	c.G613A	p.G205R	TGATTCCGCACCA	.	112.0	7.0	81.0	0.0	.	.	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186076063	186076063	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	HMCN1	NM_031935	exon70	c.A10818T	p.G3606G	TGCAGGAGATGAT	.	113.0	31.0	61.0	0.0	.	797	.	.	Atlas-SNP
PLA2G4A	5321	hgsc.bcm.edu	hg19	1	186880396	186880396	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	PLA2G4A	NM_024420	exon7	c.C433T	p.R145X	GACCTACGATTTA	.	177.0	61.0	112.0	0.0	.	125	.	.	Atlas-SNP
EXO1	9156	hgsc.bcm.edu	hg19	1	242042426	242042426	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	EXO1	NM_130398	exon13	c.G1890A	p.L630L	AGCATTGCAGCAG	.	205.0	15.0	160.0	0.0	.	103	.	.	Atlas-SNP
HEATR5B	54497	hgsc.bcm.edu	hg19	2	37280689	37280689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	HEATR5B	NM_019024	exon17	c.G2461T	p.A821S	GCACAGCCTGCTG	.	376.0	155.0	523.0	0.0	.	185	.	.	Atlas-SNP
GYPC	2995	hgsc.bcm.edu	hg19	2	127453545	127453545	+	Missense_Mutation	SNP	G	G	A	rs200879714	bycluster	TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	GYPC,right_upper_lobe,carcinoma,0,1	GYPC	NM_002101	exon4	c.G214A	p.V72I	GCCATCGTCCTAG	.	68.0	7.0	85.0	0.0	.	27	.	.	Atlas-SNP
DNAJB2	3300	hgsc.bcm.edu	hg19	2	220147607	220147607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	DNAJB2	NM_006736	exon6	c.C401T	p.S134L	GACACTCAGGCCC	.	60.0	14.0	91.0	0.0	.	31	.	.	Atlas-SNP
SLC4A3	6508	hgsc.bcm.edu	hg19	2	220500183	220500183	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	SLC4A3	NM_201574	exon13	c.T2018A	p.M673K	TCGAGATGACCAC	.	288.0	74.0	365.0	0.0	.	144	.	.	Atlas-SNP
RFTN1	23180	hgsc.bcm.edu	hg19	3	16411777	16411777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	RFTN1	NM_015150	exon6	c.T836C	p.I279T	GTGAAGATCTCCA	.	100.0	14.0	158.0	0.0	.	79	.	.	Atlas-SNP
CCDC13	152206	hgsc.bcm.edu	hg19	3	42799704	42799704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	CCDC13	NM_144719	exon2	c.A134G	p.D45G	TGGTCGTCAGCTC	.	104.0	24.0	125.0	0.0	.	71	.	.	Atlas-SNP
BAP1	8314	hgsc.bcm.edu	hg19	3	52437795	52437795	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	BAP1	NM_004656	exon13	c.C1366T	p.Q456X	CCTTCTGGGACTC	.	41.0	19.0	42.0	0.0	.	371	.	.	Atlas-SNP
BAP1	8314	hgsc.bcm.edu	hg19	3	52441304	52441304	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	BAP1,NS,carcinoma,0,1	BAP1	NM_004656	exon7	c.C466T	p.Q156X	CATTCTGCTTCTC	.	134.0	50.0	182.0	0.0	.	371	.	.	Atlas-SNP
ROBO1	6091	hgsc.bcm.edu	hg19	3	78701075	78701075	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	ROBO1	NM_002941	exon19	c.C2619T	p.A873A	TCCATGGGCATCT	.	103.0	35.0	113.0	0.0	.	833	.	.	Atlas-SNP
OR5K1	26339	hgsc.bcm.edu	hg19	3	98189208	98189208	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	OR5K1	NM_001004736	exon1	c.A788C	p.N263T	GACCAAATTTGCT	.	121.0	36.0	204.0	0.0	.	51	.	.	Atlas-SNP
POLQ	10721	hgsc.bcm.edu	hg19	3	121228964	121228964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	POLQ	NM_199420	exon11	c.G1738A	p.G580R	TCGCTCCAAGCTG	.	78.0	25.0	138.0	0.0	.	273	.	.	Atlas-SNP
WDR49	151790	hgsc.bcm.edu	hg19	3	167293897	167293897	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	WDR49	NM_178824	exon4	c.A295T	p.R99W	CTATCCTCTGGAT	.	95.0	14.0	152.0	0.0	.	188	.	.	Atlas-SNP
TMEM41A	90407	hgsc.bcm.edu	hg19	3	185213096	185213096	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	TMEM41A	NM_080652	exon3	c.T281C	p.L94S	CCAGCTAAAACAT	.	118.0	38.0	112.0	0.0	.	18	.	.	Atlas-SNP
GNPDA2	132789	hgsc.bcm.edu	hg19	4	44713036	44713036	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	GNPDA2	NM_138335	exon5	c.A528T	p.G176G	TAAATCTCCATCA	.	84.0	20.0	109.0	0.0	.	28	.	.	Atlas-SNP
QRFPR	84109	hgsc.bcm.edu	hg19	4	122251606	122251606	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	QRFPR	NM_198179	exon5	c.T870A	p.H290Q	GACAACATGGAAT	.	48.0	10.0	71.0	0.0	.	65	.	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126398471	126398471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	FAT4	NM_024582	exon13	c.C12455T	p.A4152V	TGGCAGCACAAGG	.	78.0	14.0	97.0	0.0	.	1752	.	.	Atlas-SNP
PHF17	79960	hgsc.bcm.edu	hg19	4	129792936	129792936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	PHF17	NM_199320	exon11	c.A2048G	p.K683R	GTCACAAGCCTCT	.	184.0	24.0	236.0	0.0	.	63	.	.	Atlas-SNP
CLCN3	1182	hgsc.bcm.edu	hg19	4	170618374	170618374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	CLCN3	NM_001829	exon9	c.G1052T	p.R351I	TATGGAGATCATT	.	139.0	35.0	206.0	0.0	.	85	.	.	Atlas-SNP
NNT	23530	hgsc.bcm.edu	hg19	5	43649288	43649288	+	Missense_Mutation	SNP	A	A	G	rs199609080		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	NNT	NM_182977	exon11	c.A1484G	p.N495S	CTCCCAATCTAGC	.	120.0	40.0	161.0	0.0	.	92	.	A|0.999;G|0.001	Atlas-SNP
ARHGEF28	64283	hgsc.bcm.edu	hg19	5	73048892	73048892	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	.	NM_001080479	exon4	c.A340T	p.S114C	GCCTGCAGCCACC	.	57.0	18.0	81.0	0.0	.	.	.	.	Atlas-SNP
AQPEP	0	hgsc.bcm.edu	hg19	5	115298661	115298661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	.	NM_173800	exon1	c.G347A	p.R116K	AGCTGAGGCCCGA	.	77.0	15.0	133.0	0.0	.	.	.	.	Atlas-SNP
SPOCK1	6695	hgsc.bcm.edu	hg19	5	136476319	136476319	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	SPOCK1	NM_004598	exon4	c.C297T	p.T99T	GTCCTGGGTCACA	.	91.0	11.0	115.0	0.0	.	58	.	.	Atlas-SNP
PCDHA2	56146	hgsc.bcm.edu	hg19	5	140176112	140176112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	PCDHA2	NM_031495	exon1	c.G1563T	p.Q521H	GCTGCAGCCGCTG	.	101.0	26.0	110.0	0.0	.	404	.	.	Atlas-SNP
PCDHB1	29930	hgsc.bcm.edu	hg19	5	140432819	140432819	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	PCDHB1,NS,haematopoietic_neoplasm,0,1	PCDHB1	NM_013340	exon1	c.C1764A	p.T588T	AGTGACCAAAGTG	.	88.0	31.0	130.0	1.0	.	148	.	.	Atlas-SNP
PDE6A	5145	hgsc.bcm.edu	hg19	5	149323845	149323845	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	PDE6A	NM_000440	exon1	c.A392T	p.E131V	ACGATCTCTTGGT	.	84.0	31.0	102.0	0.0	.	98	.	.	Atlas-SNP
LRRC16A	55604	hgsc.bcm.edu	hg19	6	25594713	25594713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	LRRC16A	NM_001173977	exon32	c.T3077C	p.V1026A	AAGGTGTAGATGA	.	172.0	74.0	172.0	0.0	.	168	.	.	Atlas-SNP
ZBTB12	221527	hgsc.bcm.edu	hg19	6	31868735	31868735	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	ZBTB12	NM_181842	exon2	c.G348A	p.V116V	TTTCTCCACCACG	.	129.0	24.0	110.0	0.0	.	25	.	.	Atlas-SNP
LRFN2	57497	hgsc.bcm.edu	hg19	6	40399807	40399807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	LRFN2	NM_020737	exon2	c.C1046A	p.T349N	GATGTGGTGATGA	.	89.0	38.0	79.0	0.0	.	133	.	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	hg19	6	106967348	106967348	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	AIM1	NM_001624	exon2	c.C1041A	p.V347V	TACCGTCTCGGAA	.	172.0	51.0	232.0	0.0	.	161	.	.	Atlas-SNP
FRK	2444	hgsc.bcm.edu	hg19	6	116263781	116263781	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	FRK	NM_002031	exon8	c.A1314G	p.T438T	GGCACCTGTCATA	.	106.0	14.0	166.0	0.0	.	78	.	.	Atlas-SNP
PTPRK	5796	hgsc.bcm.edu	hg19	6	128388924	128388924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	PTPRK	NM_001135648	exon12	c.G1897T	p.V633F	CCACAACAATCTG	.	61.0	15.0	73.0	0.0	.	330	.	.	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	hg19	7	12414847	12414847	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	VWDE	NM_001135924	exon8	c.A1031G	p.E344G	AGGTGCTCTCTAC	.	64.0	11.0	84.0	0.0	.	123	.	.	Atlas-SNP
PRPS1L1	221823	hgsc.bcm.edu	hg19	7	18066745	18066745	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	PRPS1L1	NM_175886	exon1	c.G661T	p.D221Y	CCATGTCATCTAC	.	110.0	42.0	175.0	0.0	.	90	.	.	Atlas-SNP
NPC1L1	29881	hgsc.bcm.edu	hg19	7	44555418	44555418	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	NPC1L1	NM_013389	exon19	c.C3861T	p.V1287V	GAGGATGACGGGC	.	114.0	16.0	138.0	0.0	.	141	.	.	Atlas-SNP
MAGI2	9863	hgsc.bcm.edu	hg19	7	77797303	77797303	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	MAGI2	NM_012301	exon15	c.C2526T	p.I842I	GAGGTCGATGACA	.	123.0	23.0	196.0	0.0	.	246	.	.	Atlas-SNP
EPHB6	2051	hgsc.bcm.edu	hg19	7	142564355	142564355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	EPHB6	NM_004445	exon10	c.G1579A	p.D527N	TACTATGACCAGG	.	56.0	21.0	80.0	0.0	.	168	.	.	Atlas-SNP
PAXIP1	22976	hgsc.bcm.edu	hg19	7	154759569	154759569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	PAXIP1	NM_007349	exon8	c.C1850A	p.P617Q	TGCTCTGGATAAT	.	101.0	5.0	95.0	0.0	.	150	.	.	Atlas-SNP
CYP11B1	1584	hgsc.bcm.edu	hg19	8	143957288	143957288	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	CYP11B1	NM_000497	exon6	c.T961A	p.F321I	AGGGAAACACCGT	.	255.0	64.0	277.0	0.0	.	128	.	.	Atlas-SNP
ARHGAP39	80728	hgsc.bcm.edu	hg19	8	145759534	145759534	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	ARHGAP39	NM_025251	exon9	c.A2667T	p.A889A	CAGGGCTGCCTTC	.	49.0	9.0	47.0	0.0	.	80	.	.	Atlas-SNP
KCNV2	169522	hgsc.bcm.edu	hg19	9	2718411	2718411	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	KCNV2	NM_133497	exon1	c.G672A	p.A224A	GCAGGCGCAGGTC	.	81.0	36.0	134.0	0.0	.	72	.	.	Atlas-SNP
KIAA1432	57589	hgsc.bcm.edu	hg19	9	5770152	5770152	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	KIAA1432	NM_020829	exon23	c.A3490G	p.I1164V	GCTGGCATCTCCA	.	68.0	15.0	78.0	0.0	.	97	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79319835	79319835	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	PRUNE2	NM_015225	exon8	c.G7355T	p.G2452V	TGGGATCCAGGCA	.	114.0	21.0	153.0	0.0	.	331	.	.	Atlas-SNP
TRAF1	7185	hgsc.bcm.edu	hg19	9	123675664	123675664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	TRAF1	NM_005658	exon5	c.C647T	p.A216V	GAGGTGGCCAGGG	.	163.0	19.0	214.0	0.0	.	42	.	.	Atlas-SNP
GRIN1	2902	hgsc.bcm.edu	hg19	9	140040236	140040236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	GRIN1	NM_000832	exon3	c.G452T	p.W151L	GCGTGTGGTTTGA	.	82.0	20.0	117.0	0.0	.	51	.	.	Atlas-SNP
CACNA1B	774	hgsc.bcm.edu	hg19	9	140943745	140943745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	CACNA1B	NM_001243812	exon24	c.G3688A	p.A1230T	AGTGGCGCCCTGG	.	76.0	28.0	104.0	0.0	.	266	.	.	Atlas-SNP
HELLS	3070	hgsc.bcm.edu	hg19	10	96350209	96350209	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	HELLS	NM_018063	exon14	c.C1528T	p.R510X	CCAAAACGACGAA	.	197.0	8.0	325.0	0.0	.	63	.	.	Atlas-SNP
WBP1L	54838	hgsc.bcm.edu	hg19	10	104572770	104572770	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	.	NM_001083913	exon4	c.G774C	p.E258D	CAAAGAGAAGACG	.	47.0	8.0	65.0	0.0	.	.	.	.	Atlas-SNP
SORCS1	114815	hgsc.bcm.edu	hg19	10	108337267	108337267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	SORCS1	NM_052918	exon26	c.G3418A	p.D1140N	ATGAGTCACCAGG	.	55.0	14.0	76.0	0.0	.	534	.	.	Atlas-SNP
APBB1	322	hgsc.bcm.edu	hg19	11	6424420	6424420	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	APBB1	NM_001164	exon6	c.A1059T	p.Q353H	CTCCTCTTGGGGC	.	151.0	24.0	185.0	0.0	.	73	.	.	Atlas-SNP
OR5D18	219438	hgsc.bcm.edu	hg19	11	55587664	55587664	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	OR5D18	NM_001001952	exon1	c.T559A	p.S187T	CTACTCTCCCTTT	.	84.0	8.0	121.0	0.0	.	121	.	.	Atlas-SNP
OR1S1	219959	hgsc.bcm.edu	hg19	11	57983133	57983133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	OR1S1	NM_001004458	exon1	c.G917A	p.R306K	GCTTGAGGAATAA	.	105.0	12.0	127.0	0.0	.	139	.	.	Atlas-SNP
CPT1A	1374	hgsc.bcm.edu	hg19	11	68540890	68540890	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	CPT1A	NM_001876	exon14	c.A1583T	p.E528V	ATAACCTCTTGAC	.	65.0	13.0	70.0	0.0	.	89	.	.	Atlas-SNP
PDZD3	79849	hgsc.bcm.edu	hg19	11	119058343	119058343	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	PDZD3	NM_001168468	exon6	c.G591A	p.G197G	CCCCGGGGCCCGG	.	88.0	4.0	102.0	0.0	.	42	.	.	Atlas-SNP
ARHGAP32	9743	hgsc.bcm.edu	hg19	11	128838980	128838980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	ARHGAP32	NM_001142685	exon22	c.A6086G	p.Y2029C	GAGTGGTAATCTT	.	97.0	5.0	166.0	0.0	.	307	.	.	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	hg19	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	bycluster	TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	KRAS_ENST00000256078,NS,adenocarcinoma,0,66	KRAS	NM_004985	exon2	c.G35A	p.G12D	ACGCCACCAGCTC	.	142.0	21.0	163.0	0.0	.	30930	.	.	Atlas-SNP
DPY19L2	283417	hgsc.bcm.edu	hg19	12	63974527	63974527	+	Silent	SNP	G	G	A	rs140003085		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	DPY19L2,colon,carcinoma,-2,1	DPY19L2	NM_173812	exon19	c.C1815T	p.L605L	ATTACGGAGGTTT	.	163.0	50.0	247.0	0.0	.	97	.	.	Atlas-SNP
LRRIQ1	84125	hgsc.bcm.edu	hg19	12	85450161	85450161	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	LRRIQ1	NM_001079910	exon8	c.A1590T	p.L530F	AGAATTAAAGTCT	.	269.0	37.0	426.0	0.0	.	512	.	.	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	hg19	12	124882700	124882700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	NCOR2	NM_006312	exon18	c.G1841A	p.R614H	GTCCAGCGAGAAC	.	80.0	8.0	106.0	0.0	.	475	.	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39262692	39262692	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	FREM2	NM_207361	exon1	c.A1211T	p.Q404L	CTGACCAGGAGCG	.	92.0	14.0	99.0	0.0	.	385	.	.	Atlas-SNP
COG3	83548	hgsc.bcm.edu	hg19	13	46067592	46067592	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	COG3	NM_031431	exon12	c.A1298T	p.E433V	AAAATGAGGTGCT	.	58.0	20.0	102.0	0.0	.	52	.	.	Atlas-SNP
TEP1	7011	hgsc.bcm.edu	hg19	14	20847004	20847004	+	Missense_Mutation	SNP	T	T	C	rs111632717		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	TEP1	NM_007110	exon37	c.A5261G	p.Q1754R	TTAGTCTGCAGCA	.	93.0	20.0	119.0	0.0	.	224	.	T|0.500;C|0.500	Atlas-SNP
KHNYN	23351	hgsc.bcm.edu	hg19	14	24905674	24905674	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	KHNYN	NM_015299	exon7	c.A1766T	p.E589V	TGGATGAATTTCT	.	60.0	15.0	92.0	0.0	.	46	.	.	Atlas-SNP
NID2	22795	hgsc.bcm.edu	hg19	14	52485915	52485915	+	Silent	SNP	G	G	A	rs142814187		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	NID2	NM_007361	exon14	c.C2892T	p.D964D	CTGCTCGTCGCAT	.	86.0	16.0	141.0	0.0	.	201	.	G|1.000;A|0.000	Atlas-SNP
SLC8A3	6547	hgsc.bcm.edu	hg19	14	70633575	70633575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	SLC8A3	NM_183002	exon2	c.C1565T	p.T522I	AAGATGGTAACTG	.	70.0	9.0	107.0	0.0	.	234	.	.	Atlas-SNP
EML5	161436	hgsc.bcm.edu	hg19	14	89094074	89094074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	EML5	NM_183387	exon33	c.G4447T	p.V1483F	AGCTGACTGAACA	.	69.0	28.0	47.0	0.0	.	141	.	.	Atlas-SNP
RFX7	64864	hgsc.bcm.edu	hg19	15	56386765	56386765	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	RFX7	NM_022841	exon9	c.C3161G	p.A1054G	TGTGTGGCCATGG	.	62.0	21.0	102.0	0.0	.	170	.	.	Atlas-SNP
MEF2A	4205	hgsc.bcm.edu	hg19	15	100252723	100252723	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	MEF2A	NM_005587	exon11	c.A1247C	p.Q416P	AGCAGCAGCAGCA	.	32.0	7.0	30.0	0.0	.	138	.	.	Atlas-SNP
MEF2A	4205	hgsc.bcm.edu	hg19	15	100252726	100252726	+	Missense_Mutation	SNP	A	A	C	rs200861006		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	MEF2A	NM_005587	exon11	c.A1250C	p.Q417P	AGCAGCAGCAGCA	.	32.0	5.0	30.0	0.0	.	138	.	.	Atlas-SNP
MEFV	4210	hgsc.bcm.edu	hg19	16	3304621	3304621	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	MEFV	NM_000243	exon2	c.C447T	p.A149A	CCTCCCGGCCTCG	.	20.0	6.0	39.0	0.0	.	170	.	.	Atlas-SNP
KCTD13	253980	hgsc.bcm.edu	hg19	16	29934567	29934567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	KCTD13	NM_178863	exon2	c.G358A	p.E120K	GTGCTTCGCCCAG	.	85.0	33.0	123.0	0.0	.	19	.	.	Atlas-SNP
VPS35	55737	hgsc.bcm.edu	hg19	16	46708524	46708524	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	VPS35	NM_018206	exon9	c.T963G	p.D321E	TTTAATATCCGCT	.	77.0	11.0	137.0	0.0	.	49	.	.	Atlas-SNP
CDH1	999	hgsc.bcm.edu	hg19	16	68849632	68849632	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	CDH1	NM_004360	exon10	c.A1535T	p.E512V	CCCAGGAGCCAGA	.	104.0	27.0	170.0	0.0	.	535	.	.	Atlas-SNP
CCDC103	388389	hgsc.bcm.edu	hg19	17	42979763	42979763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	CCDC103	NM_001258399	exon4	c.G311A	p.C104Y	ACGTCTGCTGACT	.	104.0	38.0	109.0	0.0	.	15	.	.	Atlas-SNP
TLK2	11011	hgsc.bcm.edu	hg19	17	60599622	60599622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	TLK2	NM_001112707	exon4	c.G211A	p.E71K	CCATATGAAACTA	.	373.0	128.0	474.0	0.0	.	223	.	.	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	hg19	18	6985272	6985272	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	LAMA1	NM_005559	exon39	c.C5624G	p.A1875G	TCAGCGGCATGGT	.	85.0	13.0	76.0	0.0	.	458	.	.	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	hg19	18	31323438	31323438	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	ASXL3_ENST00000269197,NS,carcinoma,0,2	ASXL3	NM_030632	exon12	c.T3626A	p.V1209E	TACCTGTGTCACA	.	68.0	24.0	91.0	0.0	.	405	.	.	Atlas-SNP
CAMSAP3	57662	hgsc.bcm.edu	hg19	19	7676885	7676885	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	CAMSAP3	NM_001080429	exon13	c.C1587T	p.P529P	CCTGCCCGAGGGG	.	58.0	7.0	100.0	0.0	.	131	.	.	Atlas-SNP
WIZ	58525	hgsc.bcm.edu	hg19	19	15547669	15547669	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	WIZ	NM_021241	exon3	c.G477A	p.T159T	GGGCACCGTGAGA	.	165.0	21.0	190.0	0.0	.	152	.	.	Atlas-SNP
ZNF728	388523	hgsc.bcm.edu	hg19	19	23159057	23159057	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	.	NM_001267716	exon4	c.T1082C	p.I361T	GTATGAATTACCT	.	33.0	12.0	24.0	0.0	.	.	.	.	Atlas-SNP
ZNF536	9745	hgsc.bcm.edu	hg19	19	30936235	30936235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	ZNF536	NM_014717	exon2	c.G1766A	p.G589D	AAGTGGGCAGCCA	.	98.0	35.0	129.0	0.0	.	424	.	.	Atlas-SNP
ZNF536	9745	hgsc.bcm.edu	hg19	19	30936236	30936236	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	ZNF536	NM_014717	exon2	c.C1767A	p.G589G	AGTGGGCAGCCAG	.	98.0	35.0	129.0	0.0	.	424	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	39034257	39034257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	RYR1	NM_000540	exon86	c.C11864T	p.S3955L	CCATGTCGGTGGC	.	71.0	7.0	84.0	0.0	.	708	.	.	Atlas-SNP
PRX	57716	hgsc.bcm.edu	hg19	19	40901569	40901569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	PRX	NM_181882	exon7	c.G2690A	p.R897Q	GGCACTCGGAAGC	.	96.0	17.0	95.0	0.0	.	151	.	.	Atlas-SNP
ZNF610	162963	hgsc.bcm.edu	hg19	19	52869167	52869167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	ZNF610	NM_001161426	exon6	c.A536G	p.Y179C	ATAAATATAGAAA	.	139.0	48.0	165.0	0.0	.	84	.	.	Atlas-SNP
EPS8L1	54869	hgsc.bcm.edu	hg19	19	55593208	55593208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	EPS8L1	NM_133180	exon9	c.C842T	p.A281V	CGGAGGCGGCCAG	.	168.0	34.0	185.0	0.0	.	122	.	.	Atlas-SNP
ZNF544	27300	hgsc.bcm.edu	hg19	19	58772416	58772416	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	ZNF544	NM_014480	exon7	c.G444C	p.E148D	CTCAGAGAGACTG	.	128.0	19.0	142.0	0.0	.	57	.	.	Atlas-SNP
TRPC4AP	26133	hgsc.bcm.edu	hg19	20	33657145	33657145	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	TRPC4AP	NM_199368	exon3	c.C368G	p.T123S	TAAGTGGTTTCTT	.	316.0	111.0	411.0	0.0	.	64	.	.	Atlas-SNP
EMILIN3	90187	hgsc.bcm.edu	hg19	20	39993687	39993687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	EMILIN3	NM_052846	exon2	c.C278A	p.P93H	GTCCCGGGGCACT	.	51.0	19.0	82.0	0.0	.	63	.	.	Atlas-SNP
JPH2	57158	hgsc.bcm.edu	hg19	20	42788721	42788721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	JPH2	NM_020433	exon2	c.C706T	p.R236C	ACGTGCGCGACTC	.	114.0	8.0	188.0	0.0	.	86	.	.	Atlas-SNP
SS18L1	26039	hgsc.bcm.edu	hg19	20	60739279	60739279	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	SS18L1	NM_198935	exon7	c.T800G	p.M267R	AGCCCATGGGCCA	.	151.0	11.0	158.0	0.0	.	37	.	.	Atlas-SNP
COL20A1	57642	hgsc.bcm.edu	hg19	20	61951458	61951458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	COL20A1,NS,malignant_melanoma,0,1	COL20A1	NM_020882	exon24	c.C2984T	p.P995L	AGCGGCCCCTTGG	.	108.0	39.0	110.0	0.0	.	137	.	.	Atlas-SNP
RCAN1	1827	hgsc.bcm.edu	hg19	21	35893850	35893850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	RCAN1	NM_004414	exon3	c.C533T	p.A178V	GGGGTCGCATCTT	.	113.0	16.0	119.0	0.0	.	37	.	.	Atlas-SNP
NCF4	4689	hgsc.bcm.edu	hg19	22	37273743	37273743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	NCF4	NM_000631	exon10	c.G898T	p.D300Y	CTGTCGGATGAGG	.	62.0	20.0	86.0	0.0	.	66	.	.	Atlas-SNP
ARSH	347527	hgsc.bcm.edu	hg19	X	2951122	2951122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	ARSH	NM_001011719	exon9	c.G1385T	p.C462F	GTGCCTGCTATGG	.	92.0	11.0	123.0	0.0	.	72	.	.	Atlas-SNP
MID1	4281	hgsc.bcm.edu	hg19	X	10535300	10535300	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	MID1	NM_001193277	exon2	c.T288A	p.S96S	GCTGGGAGAGTTG	.	74.0	14.0	157.0	0.0	.	72	.	.	Atlas-SNP
MAP3K15	389840	hgsc.bcm.edu	hg19	X	19413261	19413261	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	MAP3K15	NM_001001671	exon16	c.A2132T	p.Q711L	AGGTACTGAACGA	.	70.0	16.0	144.0	0.0	.	108	.	.	Atlas-SNP
PAK3	5063	hgsc.bcm.edu	hg19	X	110459745	110459745	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	PAK3	NM_001128168	exon15	c.A1612T	p.M538L	CTTGAGATGGATG	.	90.0	8.0	119.0	0.0	.	179	.	.	Atlas-SNP
SAGE1	55511	hgsc.bcm.edu	hg19	X	134988200	134988200	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	SAGE1	NM_018666	exon6	c.A472T	p.N158Y	ACTCACAATATCC	.	62.0	11.0	127.0	0.0	.	160	.	.	Atlas-SNP
COX1	5742	hgsc.bcm.edu	hg19	MT	6993	6993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	.	ENST00000361624	exon1	c.G1090A	p.D364N	TCACTAGACATCG	.	21.0	7.0	33.0	0.0	.	.	.	.	Atlas-SNP
FEZF2	55079	hgsc.bcm.edu	hg19	3	62358208	62358209	+	In_Frame_Ins	INS	-	-	CCA	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	FEZF2	NM_018008	exon2	c.336_337insTGG	p.G112delinsGG	.	.	40.0	12.0	58.0	0.0	.	46	.	.	Atlas-INDEL
ALB	213	hgsc.bcm.edu	hg19	4	74279249	74279251	+	In_Frame_Del	DEL	ATG	ATG	-	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	ATG	ATG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	ALB	NM_000477	exon8	c.955_957del	p.319_319del	.	.	128.0	37.0	180.0	0.0	.	132	.	.	Atlas-INDEL
TDRD5	163589	hgsc.bcm.edu	hg19	1	179599927	179599928	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	TDRD5	NM_001199091	exon7	c.998_999insA	p.P333fs	.	.	308.0	30.0	224.0	0.0	.	149	.	.	Atlas-INDEL
PRIMA1	145270	hgsc.bcm.edu	hg19	14	94245574	94245575	+	Frame_Shift_Ins	INS	-	-	GGGG	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	PRIMA1	NM_178013	exon3	c.177_178insCCCC	p.P59fs	.	.	73.0	24.0	105.0	0.0	.	21	.	.	Atlas-INDEL
ZNF791	163049	hgsc.bcm.edu	hg19	19	12739581	12739581	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	ZNF791	NM_153358	exon4	c.1237delG	p.E413fs	.	.	103.0	12.0	147.0	0.0	.	53	.	.	Atlas-INDEL
MLXIPL	51085	hgsc.bcm.edu	hg19	7	73020079	73020096	+	In_Frame_Del	DEL	GTCAGCATTGCCGACGTA	GTCAGCATTGCCGACGTA	-	novel		TCGA-DD-AADA-01A-11D-A40R-10	TCGA-DD-AADA-10A-01D-A40U-10	GTCAGCATTGCCGACGTA	GTCAGCATTGCCGACGTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01012d58-9532-4536-8712-4829e4645133	d5357b31-faf2-4e43-b215-8370741d689f	.	MLXIPL	NM_032953	exon7	c.824_841del	p.275_281del	.	.	79.0	18.0	120.0	0.0	.	54	.	.	Atlas-INDEL
