Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CCDC17	149483	hgsc.bcm.edu	hg19	1	46088962	46088962	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	CCDC17	NM_001114938	exon3	c.G420A	p.A140A	GAACAGCGCCCGC	.	51.0	28.0	44.0	0.0	.	54	.	.	Atlas-SNP
DDX20	11218	hgsc.bcm.edu	hg19	1	112309297	112309297	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	DDX20	NM_007204	exon11	c.C2251A	p.Q751K	GAAGCCCAGGAAG	.	212.0	59.0	165.0	0.0	.	50	.	.	Atlas-SNP
GATAD2B	57459	hgsc.bcm.edu	hg19	1	153788806	153788806	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	GATAD2B	NM_020699	exon7	c.G1159T	p.E387X	TGAACTCGCTATT	.	165.0	83.0	127.0	0.0	.	62	.	.	Atlas-SNP
TNN	63923	hgsc.bcm.edu	hg19	1	175067569	175067569	+	Missense_Mutation	SNP	C	C	T	rs199634558	bycluster	TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	TNN	NM_022093	exon9	c.C1957T	p.R653C	GTGGTGCGCTACA	.	598.0	292.0	383.0	0.0	.	297	.	.	Atlas-SNP
SDCCAG8	10806	hgsc.bcm.edu	hg19	1	243589739	243589739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	SDCCAG8	NM_006642	exon16	c.G1864T	p.A622S	GAAATAGCTCAAC	.	379.0	132.0	377.0	0.0	.	73	.	.	Atlas-SNP
ZBTB18	10472	hgsc.bcm.edu	hg19	1	244218178	244218178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	.	NM_205768	exon2	c.G1102T	p.V368F	CCCTACGTCTCCA	.	94.0	44.0	85.0	0.0	.	.	.	.	Atlas-SNP
ZNF672	79894	hgsc.bcm.edu	hg19	1	249142142	249142142	+	Silent	SNP	G	G	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	ZNF672,caecum,carcinoma,0,1	ZNF672	NM_024836	exon4	c.G669C	p.G223G	CTCGGGGGAGAAA	.	62.0	16.0	75.0	0.0	.	32	.	.	Atlas-SNP
TMEM247	388946	hgsc.bcm.edu	hg19	2	46707887	46707887	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	.	NM_001145051	exon2	c.A461C	p.E154A	AGCAAGAGGCGGC	.	101.0	19.0	117.0	0.0	.	.	.	.	Atlas-SNP
UGP2	7360	hgsc.bcm.edu	hg19	2	64114716	64114716	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	UGP2	NM_006759	exon8	c.A1252C	p.M418L	CTGACAATGAGTG	.	197.0	67.0	181.0	0.0	.	38	.	.	Atlas-SNP
VPS54	51542	hgsc.bcm.edu	hg19	2	64176272	64176272	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	VPS54	NM_016516	exon8	c.T1036C	p.L346L	TTTCTAATTCACA	.	57.0	14.0	57.0	0.0	.	57	.	.	Atlas-SNP
CD302	9936	hgsc.bcm.edu	hg19	2	160654643	160654643	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	CD302	NM_001198764	exon1	c.G67T	p.G23X	GCTTACCCGCGAC	.	66.0	20.0	43.0	0.0	.	22	.	.	Atlas-SNP
ITGA6	3655	hgsc.bcm.edu	hg19	2	173355794	173355794	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	ITGA6	NM_000210	exon21	c.C2722G	p.Q908E	GAAAAACAGATAG	.	383.0	127.0	349.0	0.0	.	171	.	.	Atlas-SNP
PGAP1	80055	hgsc.bcm.edu	hg19	2	197738476	197738476	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	PGAP1	NM_024989	exon15	c.C1433G	p.S478C	CTTGAAGACAATC	.	165.0	53.0	182.0	0.0	.	84	.	.	Atlas-SNP
CELSR3	1951	hgsc.bcm.edu	hg19	3	48680218	48680218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	CELSR3	NM_001407	exon30	c.T8506C	p.S2836P	GGCCGGAGCGGGC	.	62.0	38.0	83.0	0.0	.	237	.	.	Atlas-SNP
PROK2	60675	hgsc.bcm.edu	hg19	3	71830662	71830662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	PROK2	NM_001126128	exon2	c.C178A	p.P60T	CCATAGGTGTGCA	.	152.0	76.0	224.0	0.0	.	13	.	.	Atlas-SNP
CNTN3	5067	hgsc.bcm.edu	hg19	3	74548904	74548904	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	CNTN3	NM_020872	exon2	c.A88G	p.K30E	GTTCTTTGATAAA	.	41.0	24.0	66.0	0.0	.	174	.	.	Atlas-SNP
GOLIM4	27333	hgsc.bcm.edu	hg19	3	167750442	167750442	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	GOLIM4	NM_014498	exon9	c.A1042G	p.M348V	GCTCCATTTCTTC	.	265.0	49.0	123.0	0.0	.	71	.	.	Atlas-SNP
PCYT1A	5130	hgsc.bcm.edu	hg19	3	195997368	195997368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	PCYT1A	NM_005017	exon3	c.G35A	p.R12K	CTCTTCCTTGCAT	.	188.0	34.0	136.0	0.0	.	34	.	.	Atlas-SNP
NR3C2	4306	hgsc.bcm.edu	hg19	4	149115896	149115896	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	NR3C2	NM_000901	exon5	c.2014+1G>T	.	AACTTACCTCCTA	.	17.0	6.0	35.0	0.0	.	94	.	.	Atlas-SNP
PDZD2	23037	hgsc.bcm.edu	hg19	5	32087361	32087361	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	PDZD2	NM_178140	exon19	c.A3807G	p.A1269A	GCCTGCATCGCCC	.	342.0	50.0	182.0	0.0	.	306	.	.	Atlas-SNP
RREB1	6239	hgsc.bcm.edu	hg19	6	7230408	7230408	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	RREB1	NM_001003700	exon10	c.G2076T	p.T692T	GCGCACGCACAGT	.	51.0	25.0	98.0	0.0	.	242	.	.	Atlas-SNP
EDN1	1906	hgsc.bcm.edu	hg19	6	12294631	12294631	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	EDN1	NM_001955	exon4	c.A527C	p.Q176P	TAAGACAAACCAG	.	335.0	151.0	481.0	1.0	.	23	.	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38885133	38885133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	DNAH8	NM_001206927	exon69	c.T10259C	p.M3420T	TTACTATGGATCC	.	97.0	39.0	91.0	0.0	.	1239	.	.	Atlas-SNP
SLC29A1	2030	hgsc.bcm.edu	hg19	6	44197363	44197363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	SLC29A1	NM_004955	exon4	c.C149A	p.S50Y	ATGTGTCCTTGGT	.	76.0	29.0	64.0	0.0	.	45	.	.	Atlas-SNP
KIAA1244	57221	hgsc.bcm.edu	hg19	6	138611075	138611075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	KIAA1244	NM_020340	exon18	c.A3017G	p.H1006R	GAAGCCACAACCC	.	206.0	59.0	192.0	0.0	.	236	.	.	Atlas-SNP
PHACTR2	9749	hgsc.bcm.edu	hg19	6	144086750	144086750	+	Silent	SNP	C	C	T	rs200488499	by1000genomes;alternate_allele	TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	PHACTR2	NM_001100164	exon6	c.C1047T	p.P349P	GGCCCCCCCTCTC	.	107.0	48.0	126.0	0.0	.	99	.	C|1.000;G|0.000	Atlas-SNP
AUTS2	26053	hgsc.bcm.edu	hg19	7	70255636	70255636	+	Missense_Mutation	SNP	G	G	A	rs371317370		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	AUTS2	NM_015570	exon19	c.G3434A	p.R1145Q	ACGAGCGGGGAGG	.	143.0	54.0	124.0	0.0	.	173	.	.	Atlas-SNP
PON3	5446	hgsc.bcm.edu	hg19	7	95019498	95019498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	PON3	NM_000940	exon3	c.A169G	p.I57V	GAAGTATATCAAT	.	112.0	40.0	109.0	0.0	.	59	.	.	Atlas-SNP
DLX6	1750	hgsc.bcm.edu	hg19	7	96635420	96635420	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.,1	DLX6	NM_005222	exon1	c.A131C	p.Q44P	AGCAACAGCCGCC	.	46.0	4.0	32.0	0.0	.	37	.	.	Atlas-SNP
COG5	10466	hgsc.bcm.edu	hg19	7	106898762	106898762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	COG5	NM_006348	exon15	c.G1735T	p.A579S	CTACTGCCACATT	.	119.0	35.0	107.0	0.0	.	78	.	.	Atlas-SNP
TMEM68	137695	hgsc.bcm.edu	hg19	8	56668880	56668880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	TMEM68	NM_152417	exon4	c.A416G	p.Y139C	ATGAAATAGTAAA	.	92.0	27.0	108.0	0.0	.	25	.	.	Atlas-SNP
CNBD1	168975	hgsc.bcm.edu	hg19	8	87951908	87951908	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	CNBD1	NM_173538	exon4	c.T357C	p.H119H	AGCACATGGTGGC	.	760.0	143.0	411.0	0.0	.	206	.	.	Atlas-SNP
DCAF4L2	138009	hgsc.bcm.edu	hg19	8	88885852	88885852	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	DCAF4L2	NM_152418	exon1	c.G348T	p.P116P	TTTGTGCGGGTAT	.	167.0	34.0	104.0	0.0	.	187	.	.	Atlas-SNP
LRP12	29967	hgsc.bcm.edu	hg19	8	105503525	105503525	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	LRP12	NM_013437	exon7	c.T1956C	p.S652S	ATCATCAGACTCC	.	160.0	100.0	104.0	0.0	.	124	.	.	Atlas-SNP
KLHL38	340359	hgsc.bcm.edu	hg19	8	124664210	124664210	+	Silent	SNP	C	C	G	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	KLHL38	NM_001081675	exon1	c.G957C	p.P319P	CCGTGTCGGGAGT	.	191.0	76.0	122.0	0.0	.	81	.	.	Atlas-SNP
PUF60	22827	hgsc.bcm.edu	hg19	8	144900554	144900554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	PUF60	NM_078480	exon6	c.A499G	p.M167V	GCTTCATGGTGAC	.	195.0	117.0	108.0	0.0	.	26	.	.	Atlas-SNP
KANK1	23189	hgsc.bcm.edu	hg19	9	711598	711598	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	KANK1	NM_001256876	exon7	c.G832C	p.E278Q	GAGCTGGAGGAGC	.	58.0	34.0	118.0	0.0	.	231	.	.	Atlas-SNP
PSIP1	11168	hgsc.bcm.edu	hg19	9	15469957	15469957	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	PSIP1	NM_001128217	exon11	c.A1012T	p.K338X	CTTTCTTAACTTC	.	13.0	5.0	40.0	0.0	.	93	.	.	Atlas-SNP
DENND4C	55667	hgsc.bcm.edu	hg19	9	19316742	19316742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	DENND4C,NS,carcinoma,-1,1	DENND4C	NM_017925	exon12	c.C1712T	p.A571V	TTATGGCGTCTAT	.	69.0	32.0	118.0	0.0	.	120	.	.	Atlas-SNP
KIAA1958	158405	hgsc.bcm.edu	hg19	9	115337110	115337110	+	Silent	SNP	T	T	G	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	KIAA1958	NM_133465	exon2	c.T750G	p.A250A	GTCTGCTAAACTG	.	102.0	6.0	93.0	0.0	.	52	.	.	Atlas-SNP
RAPGEF1	2889	hgsc.bcm.edu	hg19	9	134477527	134477527	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	RAPGEF1	NM_198679	exon12	c.G1918C	p.A640P	TCCCAGCCGGTGG	.	62.0	18.0	53.0	0.0	.	126	.	.	Atlas-SNP
SDCCAG3	10807	hgsc.bcm.edu	hg19	9	139301664	139301664	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	SDCCAG3	NM_001039707	exon5	c.A752G	p.D251G	GCAAAGTCTGCGC	.	122.0	40.0	120.0	0.0	.	41	.	.	Atlas-SNP
SYNPO2L	79933	hgsc.bcm.edu	hg19	10	75407832	75407832	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	SYNPO2L	NM_001114133	exon4	c.C1578A	p.P526P	GTGGCTGGGAACC	.	74.0	4.0	121.0	0.0	.	118	.	.	Atlas-SNP
NRG3	10718	hgsc.bcm.edu	hg19	10	84118543	84118543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	NRG3	NM_001165972	exon2	c.G872T	p.R291L	CCTGCCGAGACAA	.	163.0	48.0	158.0	0.0	.	301	.	.	Atlas-SNP
INPP5A	3632	hgsc.bcm.edu	hg19	10	134595384	134595384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	INPP5A_ENST00000445580,NS,carcinoma,+1,1	INPP5A	NM_005539	exon15	c.G1178A	p.R393Q	CCTTCCGAATCAT	.	106.0	36.0	133.0	0.0	.	77	.	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	hg19	11	1262639	1262639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	MUC5B	NM_002458	exon31	c.C4529A	p.T1510K	AGTGGACAGAGTG	.	144.0	52.0	143.0	0.0	.	473	.	.	Atlas-SNP
NLRP14	338323	hgsc.bcm.edu	hg19	11	7064609	7064609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	NLRP14	NM_176822	exon4	c.G1352T	p.G451V	GGCTTGGGTTAAC	.	133.0	54.0	135.0	0.0	.	187	.	.	Atlas-SNP
VWCE	220001	hgsc.bcm.edu	hg19	11	61032665	61032665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	VWCE	NM_152718	exon17	c.C1985T	p.S662F	ACGGGGGAACAGG	.	341.0	102.0	325.0	0.0	.	84	.	.	Atlas-SNP
DAGLA	747	hgsc.bcm.edu	hg19	11	61511843	61511843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	DAGLA	NM_006133	exon20	c.C3011A	p.T1004K	ACCTGACGCCCAC	.	138.0	51.0	156.0	0.0	.	109	.	.	Atlas-SNP
KIRREL3	84623	hgsc.bcm.edu	hg19	11	126316746	126316746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	KIRREL3	NM_032531	exon9	c.C1033T	p.L345F	CCACGAGCAAGGA	.	95.0	29.0	58.0	0.0	.	183	.	.	Atlas-SNP
COL2A1	1280	hgsc.bcm.edu	hg19	12	48388212	48388212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	COL2A1	NM_001844	exon12	c.C811A	p.P271T	CCTGAGGACCAGG	.	163.0	47.0	110.0	0.0	.	368	.	.	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	hg19	12	78515815	78515815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	NAV3	NM_014903	exon16	c.T3845C	p.L1282S	CCACATTAGCGCG	.	122.0	41.0	124.0	0.0	.	506	.	.	Atlas-SNP
MED13L	23389	hgsc.bcm.edu	hg19	12	116413042	116413042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	MED13L	NM_015335	exon25	c.A5665G	p.M1889V	ATGTCATTTGGAC	.	152.0	63.0	130.0	0.0	.	193	.	.	Atlas-SNP
PPP2R5E	5529	hgsc.bcm.edu	hg19	14	63881864	63881864	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	PPP2R5E	NM_006246	exon5	c.A543G	p.V181V	CTGTAATACAAAT	.	196.0	62.0	205.0	0.0	.	43	.	.	Atlas-SNP
STON2	85439	hgsc.bcm.edu	hg19	14	81743600	81743600	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	STON2,right_upper_lobe,carcinoma,0,1	STON2	NM_001256430	exon6	c.C2055T	p.T685T	AGGCAAGGTCTTC	.	150.0	93.0	169.0	0.0	.	94	.	.	Atlas-SNP
EMP2	2013	hgsc.bcm.edu	hg19	16	10631932	10631932	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	EMP2	NM_001424	exon5	c.170-1G>T	.	AGTACTCTGCGGG	.	108.0	42.0	106.0	0.0	.	21	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88494565	88494565	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	ZNF469	NM_001127464	exon1	c.C687A	p.A229A	CCAGGCCAGTGGG	.	229.0	93.0	205.0	0.0	.	121	.	.	Atlas-SNP
PLD2	5338	hgsc.bcm.edu	hg19	17	4719981	4719981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	PLD2	NM_001243108	exon15	c.G1522A	p.G508S	TGGCTGGGCAAGG	.	90.0	44.0	136.0	0.0	.	138	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578555	7578555	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	TP53_ENST00000545858,NS,carcinoma,0,58	TP53	NM_000546	exon6	c.376-1G>A	.	GGAGTACTGTAGG	.	57.0	30.0	93.0	0.0	.	33396	.	.	Atlas-SNP
MYH13	8735	hgsc.bcm.edu	hg19	17	10206563	10206563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	MYH13	NM_003802	exon39	c.G5617A	p.D1873N	GCTTGTCCACCAG	.	80.0	30.0	104.0	0.0	.	533	.	.	Atlas-SNP
SPECC1	92521	hgsc.bcm.edu	hg19	17	20135682	20135682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	SPECC1	NM_001033553	exon7	c.G2315A	p.G772D	TGCAGGGCCACGG	.	84.0	27.0	98.0	0.0	.	100	.	.	Atlas-SNP
SLC46A1	113235	hgsc.bcm.edu	hg19	17	26731821	26731821	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	SLC46A1	NM_001242366	exon2	c.C894A	p.C298X	GTCCCAGCAGAGG	.	285.0	143.0	195.0	0.0	.	17	.	.	Atlas-SNP
KIAA0100	9703	hgsc.bcm.edu	hg19	17	26946763	26946763	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	KIAA0100	NM_014680	exon31	c.C5551G	p.L1851V	CAAGCAGATTCTC	.	109.0	31.0	87.0	0.0	.	175	.	.	Atlas-SNP
TEX14	56155	hgsc.bcm.edu	hg19	17	56707834	56707834	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	TEX14,NS,NS,0,1	TEX14	NM_198393	exon3	c.A218T	p.D73V	AGAACATCAACGA	.	329.0	68.0	138.0	2.0	.	343	.	.	Atlas-SNP
NDUFV2	4729	hgsc.bcm.edu	hg19	18	9117876	9117876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	NDUFV2	NM_021074	exon2	c.A95G	p.N32S	TGCAAAATGGAGC	.	366.0	101.0	356.0	0.0	.	17	.	.	Atlas-SNP
DSC3	1825	hgsc.bcm.edu	hg19	18	28598662	28598662	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	DSC3	NM_024423	exon8	c.T1047G	p.N349K	ATTATCATTTGAA	.	51.0	15.0	53.0	0.0	.	225	.	.	Atlas-SNP
ST8SIA5	29906	hgsc.bcm.edu	hg19	18	44268787	44268787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	ST8SIA5	NM_013305	exon4	c.C407A	p.T136N	CCACTGGTGTCCA	.	115.0	61.0	82.0	0.0	.	57	.	.	Atlas-SNP
CRB3	92359	hgsc.bcm.edu	hg19	19	6464770	6464770	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	CRB3	NM_174881	exon2	c.C58G	p.R20G	CTGGCCCGCTGGG	.	26.0	12.0	39.0	0.0	.	8	.	.	Atlas-SNP
CPAMD8	27151	hgsc.bcm.edu	hg19	19	17017877	17017877	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	CPAMD8	NM_015692	exon30	c.G4053A	p.A1351A	CAGGGGCGCAGCA	.	108.0	57.0	131.0	0.0	.	192	.	.	Atlas-SNP
RPL18A	6142	hgsc.bcm.edu	hg19	19	17972267	17972267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	RPL18A	NM_000980	exon2	c.G184T	p.V62F	GAGATTGTCTACT	.	32.0	12.0	60.0	0.0	.	15	.	.	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	hg19	19	22156515	22156515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	ZNF208	NM_007153	exon4	c.A1321G	p.M441V	GTTCCATAAGGTT	.	149.0	29.0	122.0	0.0	.	817	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	39034235	39034235	+	Silent	SNP	A	A	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	RYR1	NM_000540	exon86	c.A11842C	p.R3948R	GGCAAGAGGAACT	.	112.0	17.0	94.0	0.0	.	708	.	.	Atlas-SNP
PSG3	5671	hgsc.bcm.edu	hg19	19	43236995	43236995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	PSG3	NM_021016	exon3	c.G650A	p.C217Y	ATTTCACATTCAT	.	145.0	88.0	73.0	0.0	.	82	.	.	Atlas-SNP
NKPD1	284353	hgsc.bcm.edu	hg19	19	45656158	45656158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	NKPD1	NM_198478	exon4	c.G1537T	p.D513Y	CGTTATCGGCCGT	.	152.0	80.0	129.0	0.0	.	46	.	.	Atlas-SNP
SULF2	55959	hgsc.bcm.edu	hg19	20	46365492	46365492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	SULF2	NM_001161841	exon3	c.A370G	p.S124G	TGCGGCTCTCGTG	.	91.0	36.0	88.0	0.0	.	131	.	.	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	hg19	21	47851867	47851867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	PCNT	NM_006031	exon38	c.G8489T	p.C2830F	AGCACTGTGAGGC	.	53.0	26.0	104.0	0.0	.	283	.	.	Atlas-SNP
C22orf29	79680	hgsc.bcm.edu	hg19	22	19839750	19839750	+	Missense_Mutation	SNP	C	C	T	rs9618711	bycluster	TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	C22orf29,NS,carcinoma,-1,1	C22orf29	NM_024627	exon3	c.G35A	p.R12H	GGAATGCGAGGGC	.	132.0	42.0	127.0	0.0	.	23	.	.	Atlas-SNP
AMELX	265	hgsc.bcm.edu	hg19	X	11316227	11316227	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	AMELX	NM_182680	exon4	c.C107G	p.S36X	AGAACTCACATTC	.	215.0	88.0	151.0	0.0	.	31	.	.	Atlas-SNP
TLR8	51311	hgsc.bcm.edu	hg19	X	12940017	12940017	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	TLR8	NM_138636	exon2	c.G2858C	p.S953T	CAAAAAGCTGGAA	.	398.0	318.0	223.0	0.0	.	134	.	.	Atlas-SNP
PRPS1	5631	hgsc.bcm.edu	hg19	X	106890949	106890949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	PRPS1	NM_002764	exon6	c.A818G	p.N273S	TCACCAATACCAT	.	101.0	5.0	106.0	0.0	.	33	.	.	Atlas-SNP
GPR101	83550	hgsc.bcm.edu	hg19	X	136112559	136112559	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	GPR101	NM_054021	exon1	c.G1275A	p.V425V	GACATCCACCCAC	.	63.0	48.0	82.0	0.0	.	96	.	.	Atlas-SNP
PLXNB3	5365	hgsc.bcm.edu	hg19	X	153033156	153033156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	PLXNB3	NM_001163257	exon4	c.G943T	p.A315S	CAGGCCGCCTTCC	.	95.0	72.0	111.0	0.0	.	208	.	.	Atlas-SNP
PHF20L1	51105	hgsc.bcm.edu	hg19	8	133806672	133806673	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	PHF20L1	NM_016018	exon3	c.100_101insA	p.E34fs	.	.	271.0	95.0	163.0	0.0	.	129	.	.	Atlas-INDEL
TMEM247	388946	hgsc.bcm.edu	hg19	2	46707883	46707884	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	ENSG00000187600_ENST00000434431,NS,carcinoma,-1,2	.	NM_001145051	exon2	c.457_458insGG	p.Q153fs	.	.	119.0	27.0	129.0	0.0	.	.	.	.	Atlas-INDEL
ZNF638	27332	hgsc.bcm.edu	hg19	2	71576746	71576746	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	ZNF638	NM_001252612	exon2	c.661delG	p.E221fs	.	.	138.0	37.0	116.0	0.0	.	179	.	.	Atlas-INDEL
CAST	831	hgsc.bcm.edu	hg19	5	96062545	96062546	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	CAST	NM_001190442	exon5	c.69_70insA	p.K23fs	.	.	75.0	40.0	157.0	0.0	.	58	.	.	Atlas-INDEL
APC	324	hgsc.bcm.edu	hg19	5	112175951	112175952	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	APC,colon,carcinoma,-1,58	APC	NM_001127510	exon17	c.4660_4661insA	p.E1554fs	.	.	155.0	62.0	269.0	0.0	.	4158	.	.	Atlas-INDEL
OTOF	9381	hgsc.bcm.edu	hg19	2	26693553	26693554	+	In_Frame_Ins	INS	-	-	CTT	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	OTOF	NM_194248	exon32	c.3931_3932insAAG	p.G1311delinsKG	.	.	47.0	14.0	50.0	0.0	.	524	.	.	Atlas-INDEL
ATR	545	hgsc.bcm.edu	hg19	3	142188996	142188997	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AADC-01A-11D-A40R-10	TCGA-DD-AADC-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7bce9063-4ae3-4e6b-864c-dcc9f551beb5	64941a85-6c7d-475d-b59f-9457c23db2ee	.	ATR	NM_001184	exon37	c.6251_6252insT	p.Y2084fs	.	.	109.0	31.0	89.0	0.0	.	285	.	.	Atlas-INDEL
