Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
KIAA1751	85452	hgsc.bcm.edu	hg19	1	1895247	1895247	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	KIAA1751	NM_001080484	exon14	c.G1635T	p.T545T	GTTGATCGTGTAG	.	35.0	13.0	49.0	0.0	.	92	.	.	Atlas-SNP
CHD5	26038	hgsc.bcm.edu	hg19	1	6228214	6228214	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	CHD5	NM_015557	exon2	c.A203T	p.K68I	ACCTCTTTCTTCT	.	42.0	14.0	48.0	0.0	.	267	.	.	Atlas-SNP
CAMTA1	23261	hgsc.bcm.edu	hg19	1	7721921	7721921	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	CAMTA1	NM_015215	exon8	c.G800C	p.S267T	CCGGCAGCCTGGG	.	82.0	61.0	118.0	0.0	.	226	.	.	Atlas-SNP
EPHA2	1969	hgsc.bcm.edu	hg19	1	16461026	16461026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	EPHA2	NM_004431	exon8	c.G1619A	p.G540D	GCCACGCCGCCAA	.	161.0	57.0	175.0	0.0	.	102	.	.	Atlas-SNP
ARHGEF19	128272	hgsc.bcm.edu	hg19	1	16533490	16533490	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ARHGEF19	NM_153213	exon6	c.A1090T	p.S364C	CGCCGCTGCCGCG	.	50.0	23.0	69.0	0.0	.	49	.	.	Atlas-SNP
GPR3	2827	hgsc.bcm.edu	hg19	1	27720946	27720946	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	GPR3	NM_005281	exon2	c.A644T	p.Q215L	ACGCCCAAATCTG	.	35.0	10.0	34.0	0.0	.	23	.	.	Atlas-SNP
SZT2	23334	hgsc.bcm.edu	hg19	1	43903332	43903332	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	SZT2	NM_015284	exon44	c.G6186A	p.L2062L	CGCTCTGTCCCGA	.	39.0	13.0	40.0	0.0	.	383	.	.	Atlas-SNP
AGBL4	84871	hgsc.bcm.edu	hg19	1	50163062	50163062	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	AGBL4	NM_032785	exon3	c.T205A	p.F69I	TAATGAACAGATC	.	340.0	103.0	345.0	0.0	.	54	.	.	Atlas-SNP
TTC22	55001	hgsc.bcm.edu	hg19	1	55252674	55252674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	TTC22	NM_001114108	exon4	c.G814T	p.D272Y	CGCAGTCATGGAC	.	29.0	10.0	22.0	0.0	.	40	.	.	Atlas-SNP
HFM1	164045	hgsc.bcm.edu	hg19	1	91843601	91843601	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	HFM1	NM_001017975	exon11	c.C1376G	p.T459R	GGAATTGTTGCAG	.	243.0	60.0	233.0	0.0	.	188	.	.	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	hg19	1	103444281	103444281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	COL11A1	NM_080629	exon35	c.G2773T	p.G925C	GAGGGCCAGGAGG	.	194.0	109.0	191.0	0.0	.	972	.	.	Atlas-SNP
POGZ	23126	hgsc.bcm.edu	hg19	1	151378800	151378800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	POGZ	NM_015100	exon19	c.T2711C	p.L904S	GGGGCTAAGGGAG	.	229.0	35.0	98.0	0.0	.	211	.	.	Atlas-SNP
LOR	4014	hgsc.bcm.edu	hg19	1	153234128	153234128	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	LOR	NM_000427	exon2	c.A703T	p.S235C	GGCGGCAGCGGCG	.	19.0	8.0	11.0	0.0	.	19	.	.	Atlas-SNP
THBS3	7059	hgsc.bcm.edu	hg19	1	155176111	155176111	+	Missense_Mutation	SNP	T	T	A	rs143240289	alternate_allele	TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	THBS3	NM_007112	exon2	c.A166T	p.I56F	GGTAGATGTCCCC	.	185.0	53.0	97.0	0.0	.	70	.	T|1.000;C|0.000	Atlas-SNP
PIGM	93183	hgsc.bcm.edu	hg19	1	160000962	160000962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	PIGM	NM_145167	exon1	c.A568G	p.I190V	GGGTTATGGGAAG	.	341.0	88.0	172.0	0.0	.	27	.	.	Atlas-SNP
COPA	1314	hgsc.bcm.edu	hg19	1	160303437	160303437	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	COPA	NM_001098398	exon5	c.T342C	p.D114D	GGTCTGATCATCG	.	194.0	25.0	80.0	0.0	.	181	.	.	Atlas-SNP
ABL2	27	hgsc.bcm.edu	hg19	1	179100575	179100575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	ABL2_ENST00000512653,NS,carcinoma,0,3	ABL2	NM_007314	exon3	c.G262T	p.A88S	TTAGTGCCTGGGG	.	206.0	126.0	97.0	1.0	.	307	.	.	Atlas-SNP
SWT1	54823	hgsc.bcm.edu	hg19	1	185173859	185173859	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	SWT1	NM_017673	exon12	c.A1697T	p.K566M	GCTATAAGGAGGA	.	528.0	145.0	278.0	0.0	.	88	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186014950	186014950	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	HMCN1	NM_031935	exon41	c.G6435A	p.L2145L	CTTGCTGAAGAAA	.	157.0	20.0	101.0	0.0	.	797	.	.	Atlas-SNP
ADORA1	134	hgsc.bcm.edu	hg19	1	203134431	203134431	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ADORA1	NM_001048230	exon3	c.A384T	p.I128I	GGCCATAGCCGGC	.	98.0	44.0	58.0	0.0	.	62	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237905615	237905615	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	RYR2	NM_001035	exon80	c.A11111T	p.D3704V	AGGAAGATGACGA	.	78.0	26.0	49.0	0.0	.	1273	.	.	Atlas-SNP
SCCPDH	51097	hgsc.bcm.edu	hg19	1	246923257	246923257	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	SCCPDH	NM_016002	exon8	c.814-2A>T	.	TCATCTAGGTTCA	.	92.0	59.0	101.0	0.0	.	37	.	.	Atlas-SNP
KCNK3	3777	hgsc.bcm.edu	hg19	2	26950553	26950553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	KCNK3	NM_002246	exon2	c.C302A	p.P101H	CGGCACCCAGCAC	.	148.0	31.0	97.0	0.0	.	43	.	.	Atlas-SNP
CLIP4	79745	hgsc.bcm.edu	hg19	2	29355071	29355071	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	CLIP4	NM_024692	exon4	c.T327A	p.T109T	TATGACTCTTTTA	.	147.0	101.0	81.0	0.0	.	69	.	.	Atlas-SNP
EML4	27436	hgsc.bcm.edu	hg19	2	42556058	42556058	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	EML4	NM_019063	exon22	c.A2374T	p.I792F	ACAGATATCAATG	.	81.0	14.0	92.0	0.0	.	92	.	.	Atlas-SNP
FSHR	2492	hgsc.bcm.edu	hg19	2	49190816	49190816	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	FSHR	NM_000145	exon10	c.A1144T	p.I382L	GCACTATGATGTT	.	155.0	11.0	109.0	0.0	.	164	.	.	Atlas-SNP
KIAA1841	84542	hgsc.bcm.edu	hg19	2	61333732	61333732	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	KIAA1841	NM_032506	exon14	c.A1546T	p.I516L	AAGGGTATAGAAT	.	153.0	40.0	134.0	0.0	.	95	.	.	Atlas-SNP
NMS	129521	hgsc.bcm.edu	hg19	2	101096962	101096962	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	NMS	NM_001011717	exon7	c.C341A	p.S114X	AGGGCTCGGGGAC	.	80.0	21.0	71.0	0.0	.	26	.	.	Atlas-SNP
SLC9A4	389015	hgsc.bcm.edu	hg19	2	103142769	103142769	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	SLC9A4	NM_001011552	exon11	c.T2002A	p.S668T	CCTCAGTCTGCAG	.	67.0	37.0	64.0	0.0	.	115	.	.	Atlas-SNP
TFCP2L1	29842	hgsc.bcm.edu	hg19	2	122005784	122005784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	TFCP2L1	NM_014553	exon5	c.G460A	p.E154K	AAAACTCGACTGC	.	42.0	12.0	58.0	0.0	.	54	.	.	Atlas-SNP
TANC1	85461	hgsc.bcm.edu	hg19	2	160086859	160086859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	TANC1	NM_033394	exon27	c.C4922T	p.A1641V	ACGCAGCCCCTCC	.	109.0	65.0	74.0	0.0	.	157	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168100737	168100737	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	XIRP2	NM_152381	exon9	c.G2835A	p.V945V	AGATGTGAAGAAT	.	277.0	166.0	258.0	0.0	.	914	.	.	Atlas-SNP
ZAK	0	hgsc.bcm.edu	hg19	2	173955762	173955762	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ZAK	NM_133646	exon2	c.G3T	p.M1I	TGAGATGTCGTCT	.	88.0	30.0	85.0	0.0	.	62	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179560620	179560620	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	TTN	NM_001267550	exon114	c.A31179T	p.V10393V	TTGAATTACTTCC	.	144.0	52.0	106.0	0.0	.	18412	.	.	Atlas-SNP
ZNF804A	91752	hgsc.bcm.edu	hg19	2	185803176	185803176	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ZNF804A	NM_194250	exon4	c.T3053A	p.V1018E	CTTTTGTAACAGC	.	126.0	28.0	116.0	0.0	.	322	.	.	Atlas-SNP
MDH1B	130752	hgsc.bcm.edu	hg19	2	207620148	207620148	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	MDH1B	NM_001039845	exon5	c.A495T	p.I165I	TAGAGTTATGCTA	.	69.0	19.0	71.0	0.0	.	89	.	.	Atlas-SNP
IQCA1	79781	hgsc.bcm.edu	hg19	2	237285770	237285770	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	IQCA1	NM_001270585	exon13	c.A1561T	p.K521X	TGACTTTCAGAGC	.	45.0	13.0	46.0	0.0	.	170	.	.	Atlas-SNP
IQSEC1	9922	hgsc.bcm.edu	hg19	3	12957128	12957128	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	IQSEC1	NM_014869	exon7	c.A2168T	p.Q723L	ACCTTCTGCACCT	.	64.0	19.0	57.0	0.0	.	88	.	.	Atlas-SNP
ARPP21	10777	hgsc.bcm.edu	hg19	3	35771014	35771014	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ARPP21	NM_016300	exon15	c.T1445A	p.L482H	TCCTTCTTAATCC	.	90.0	52.0	84.0	0.0	.	153	.	.	Atlas-SNP
TGM4	7047	hgsc.bcm.edu	hg19	3	44935105	44935105	+	Missense_Mutation	SNP	A	A	T	rs74776426	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	TGM4	NM_003241	exon5	c.A467T	p.K156I	AGCGCAAAGAGTA	.	115.0	69.0	93.0	0.0	.	82	.	A|0.978;G|0.022	Atlas-SNP
CDHR4	389118	hgsc.bcm.edu	hg19	3	49831234	49831234	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	CDHR4	NM_001007540	exon12	c.1483+2T>A	.	GGATGTACCGCTG	.	164.0	99.0	158.0	0.0	.	37	.	.	Atlas-SNP
CDHR4	389118	hgsc.bcm.edu	hg19	3	49836807	49836807	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	CDHR4	NM_001007540	exon2	c.A113C	p.Q38P	AAAAACTGAAGGA	.	95.0	42.0	94.0	0.0	.	37	.	.	Atlas-SNP
BAP1	8314	hgsc.bcm.edu	hg19	3	52439294	52439294	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	BAP1	NM_004656	exon11	c.G948A	p.A316A	ACCAGCCGCCTCC	.	46.0	19.0	44.0	0.0	.	371	.	.	Atlas-SNP
FLNB	2317	hgsc.bcm.edu	hg19	3	58095360	58095360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	FLNB	NM_001457	exon15	c.G2257C	p.E753Q	GGTGTGGAGAGAA	.	124.0	29.0	115.0	0.0	.	430	.	.	Atlas-SNP
TMF1	7110	hgsc.bcm.edu	hg19	3	69084229	69084229	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	TMF1	NM_007114	exon9	c.A2189T	p.Q730L	GCCGCTTGTTCTG	.	90.0	54.0	78.0	0.0	.	77	.	.	Atlas-SNP
CRYBG3	131544	hgsc.bcm.edu	hg19	3	97605567	97605567	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	CRYBG3	NM_153605	exon8	c.A7245G	p.E2415E	GGAAGAACTGAAT	.	298.0	159.0	297.0	0.0	.	86	.	.	Atlas-SNP
FLJ25363	0	hgsc.bcm.edu	hg19	3	109136694	109136694	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	.	NM_001145553	exon2	c.C156A	p.P52P	CCCACCCATTCAA	.	77.0	13.0	62.0	0.0	.	.	.	.	Atlas-SNP
CD86	942	hgsc.bcm.edu	hg19	3	121810486	121810486	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	CD86	NM_001206924	exon2	c.T53A	p.F18Y	TGGCCTTCCTGCT	.	48.0	34.0	39.0	0.0	.	43	.	.	Atlas-SNP
CHST13	166012	hgsc.bcm.edu	hg19	3	126260677	126260677	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	CHST13	NM_152889	exon3	c.G282C	p.E94D	GCCGGAGGACCTG	.	76.0	24.0	58.0	0.0	.	21	.	.	Atlas-SNP
C3orf58	205428	hgsc.bcm.edu	hg19	3	143708415	143708415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	C3orf58	NM_173552	exon3	c.G1025T	p.C342F	AGGCTTGCTTATC	.	95.0	28.0	77.0	0.0	.	36	.	.	Atlas-SNP
C3orf58	205428	hgsc.bcm.edu	hg19	3	143708416	143708416	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	C3orf58	NM_173552	exon3	c.C1026G	p.C342W	GGCTTGCTTATCA	.	97.0	29.0	77.0	0.0	.	36	.	.	Atlas-SNP
KCNMB2	10242	hgsc.bcm.edu	hg19	3	178543411	178543411	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	KCNMB2	NM_005832	exon4	c.T92A	p.L31Q	ACCTCCTGGACAA	.	77.0	41.0	78.0	0.0	.	35	.	.	Atlas-SNP
EVC2	132884	hgsc.bcm.edu	hg19	4	5564738	5564738	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	EVC2	NM_147127	exon22	c.T3764A	p.V1255E	ATGGGTACAGGGG	.	101.0	38.0	64.0	0.0	.	202	.	.	Atlas-SNP
PTTG2	10744	hgsc.bcm.edu	hg19	4	37962314	37962314	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	PTTG2	NM_006607	exon1	c.A259T	p.S87C	CAGCCAAGCTTTT	.	140.0	86.0	120.0	0.0	.	15	.	.	Atlas-SNP
TMPRSS11BNL	401136	hgsc.bcm.edu	hg19	4	69078179	69078179	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	TMPRSS11BNL	NM_001129907	exon2	c.T25A	p.C9S	ATGTACAGGAAGC	.	286.0	89.0	254.0	0.0	.	4	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79461941	79461941	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	FRAS1	NM_025074	exon74	c.A11702T	p.Q3901L	TGTCACAGACTGG	.	141.0	82.0	145.0	0.0	.	779	.	.	Atlas-SNP
BMPR1B	658	hgsc.bcm.edu	hg19	4	96052479	96052479	+	Missense_Mutation	SNP	G	G	A	rs373000965		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	BMPR1B	NM_001256793	exon8	c.G982A	p.A328T	CTAGACGCTAAAT	.	144.0	44.0	164.0	0.0	.	121	.	.	Atlas-SNP
DDIT4L	115265	hgsc.bcm.edu	hg19	4	101109256	101109256	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	DDIT4L	NM_145244	exon3	c.T160A	p.C54S	TCTGGCAAGTTGA	.	61.0	16.0	36.0	0.0	.	33	.	.	Atlas-SNP
NEUROG2	63973	hgsc.bcm.edu	hg19	4	113436007	113436007	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	NEUROG2	NM_024019	exon2	c.T625G	p.S209A	CGGGCGAGGGGCT	.	48.0	20.0	24.0	0.0	.	25	.	.	Atlas-SNP
NAA15	80155	hgsc.bcm.edu	hg19	4	140264113	140264113	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	NAA15	NM_057175	exon5	c.A536T	p.Q179L	CACAACAGGTAAT	.	225.0	99.0	291.0	0.0	.	88	.	.	Atlas-SNP
TMEM144	55314	hgsc.bcm.edu	hg19	4	159161486	159161486	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	TMEM144	NM_018342	exon10	c.T718A	p.F240I	GGCATCTTTCTTA	.	113.0	32.0	110.0	0.0	.	34	.	.	Atlas-SNP
PALLD	23022	hgsc.bcm.edu	hg19	4	169432856	169432856	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	PALLD	NM_001166108	exon2	c.T201A	p.I67I	GCAGATTTTCAGT	.	234.0	63.0	223.0	0.0	.	179	.	.	Atlas-SNP
LRRC14B	389257	hgsc.bcm.edu	hg19	5	192291	192291	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	LRRC14B	NM_001080478	exon1	c.T638A	p.L213Q	GTGCCCTGCGCAA	.	158.0	80.0	80.0	0.0	.	30	.	.	Atlas-SNP
SLC12A7	10723	hgsc.bcm.edu	hg19	5	1094313	1094313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	SLC12A7	NM_006598	exon2	c.G175A	p.E59K	CTTGTTCCACCTC	.	145.0	48.0	75.0	0.0	.	97	.	.	Atlas-SNP
MAST4	375449	hgsc.bcm.edu	hg19	5	66462123	66462123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	MAST4	NM_001164664	exon29	c.G7116T	p.K2372N	AGGGAAGAAATGC	.	133.0	19.0	81.0	0.0	.	218	.	.	Atlas-SNP
MCTP1	79772	hgsc.bcm.edu	hg19	5	94275891	94275891	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	MCTP1	NM_024717	exon5	c.A1070T	p.D357V	GTCACATCTGTGG	.	78.0	43.0	76.0	0.0	.	110	.	.	Atlas-SNP
SPATA9	83890	hgsc.bcm.edu	hg19	5	95018538	95018538	+	Silent	SNP	C	C	T	rs373326650		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	SPATA9	NM_031952	exon1	c.G21A	p.G7G	TATCCACCCAACA	.	161.0	7.0	107.0	0.0	.	17	.	.	Atlas-SNP
FBXL17	64839	hgsc.bcm.edu	hg19	5	107356642	107356642	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	FBXL17	NM_001163315	exon7	c.T1806A	p.C602X	GATTTTACAGGAC	.	70.0	19.0	56.0	0.0	.	60	.	.	Atlas-SNP
LOX	4015	hgsc.bcm.edu	hg19	5	121405851	121405851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	LOX	NM_002317	exon6	c.C1144T	p.P382S	AGCTGGGGTTTAC	.	180.0	27.0	115.0	0.0	.	29	.	.	Atlas-SNP
SLC25A48	153328	hgsc.bcm.edu	hg19	5	135188444	135188444	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	SLC25A48	NM_145282	exon4	c.G355C	p.G119R	TCTGTCGGGCTGG	.	207.0	22.0	135.0	0.0	.	37	.	.	Atlas-SNP
TRPC7	57113	hgsc.bcm.edu	hg19	5	135651437	135651437	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	TRPC7	NM_020389	exon3	c.A811C	p.K271Q	AATCCTTGCATTG	.	130.0	66.0	67.0	0.0	.	126	.	.	Atlas-SNP
PCDHA13	56136	hgsc.bcm.edu	hg19	5	140262151	140262151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	PCDHA13	NM_031865	exon1	c.G298A	p.A100T	CGGAGCGCGGAGT	.	186.0	31.0	112.0	0.0	.	213	.	.	Atlas-SNP
PCDHGA5	56110	hgsc.bcm.edu	hg19	5	140744468	140744468	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	PCDHGA5	NM_032054	exon1	c.T571A	p.Y191N	CAAAAGTATCCGG	.	186.0	77.0	96.0	0.0	.	215	.	.	Atlas-SNP
PCDHGA12	26025	hgsc.bcm.edu	hg19	5	140811636	140811636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	PCDHGA12	NM_032094	exon1	c.A1310G	p.H437R	AAACTCATATCTC	.	153.0	18.0	96.0	0.0	.	271	.	.	Atlas-SNP
PRELID2	153768	hgsc.bcm.edu	hg19	5	145197614	145197614	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	PRELID2	NM_182960	exon5	c.A247T	p.S83C	AAATGCTCACCTG	.	111.0	20.0	65.0	0.0	.	16	.	.	Atlas-SNP
GABRP	2568	hgsc.bcm.edu	hg19	5	170232776	170232776	+	Missense_Mutation	SNP	C	C	A	rs79061387	bycluster;by1000genomes;alternate_allele	TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	GABRP	NM_014211	exon7	c.C598A	p.R200S	TCTGTGCGTGGAC	.	135.0	49.0	106.0	0.0	.	65	.	C|0.999;T|0.001	Atlas-SNP
GPRIN1	114787	hgsc.bcm.edu	hg19	5	176024938	176024938	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	GPRIN1	NM_052899	exon2	c.A1898T	p.Q633L	CCAGACTGCGGCT	.	72.0	45.0	41.0	0.0	.	77	.	.	Atlas-SNP
FOXQ1	94234	hgsc.bcm.edu	hg19	6	1313560	1313560	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	FOXQ1	NM_033260	exon1	c.G621T	p.G207G	CGACGGGGTCTTC	.	114.0	56.0	78.0	0.0	.	8	.	.	Atlas-SNP
MBOAT1	154141	hgsc.bcm.edu	hg19	6	20131376	20131376	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	MBOAT1	NM_001080480	exon5	c.T474C	p.D158D	CTTACCATCATGA	.	70.0	18.0	73.0	0.0	.	48	.	.	Atlas-SNP
ZSCAN12	9753	hgsc.bcm.edu	hg19	6	28359478	28359478	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ZSCAN12	NM_001163391	exon4	c.C589T	p.Q197X	CTTCTTGCTTTAA	.	37.0	27.0	22.0	0.0	.	35	.	.	Atlas-SNP
ZSCAN12	9753	hgsc.bcm.edu	hg19	6	28359479	28359479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ZSCAN12	NM_001163391	exon4	c.G588T	p.K196N	TTCTTGCTTTAAA	.	36.0	28.0	22.0	0.0	.	35	.	.	Atlas-SNP
PSORS1C1	170679	hgsc.bcm.edu	hg19	6	31106509	31106509	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	PSORS1C1	NM_014068	exon5	c.C120T	p.H40H	CCCCCACGTTAAT	.	82.0	17.0	73.0	0.0	.	11	.	.	Atlas-SNP
FOXP4	116113	hgsc.bcm.edu	hg19	6	41566593	41566593	+	Silent	SNP	G	G	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	FOXP4	NM_001012426	exon17	c.G1962C	p.L654L	TCCCCTGGGCGCC	.	174.0	78.0	200.0	0.0	.	83	.	.	Atlas-SNP
MEP1A	4224	hgsc.bcm.edu	hg19	6	46803136	46803136	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	MEP1A	NM_005588	exon13	c.A1934T	p.Q645L	TGAGCCAGGGGCA	.	95.0	26.0	67.0	0.0	.	93	.	.	Atlas-SNP
PTCHD4	442213	hgsc.bcm.edu	hg19	6	47869646	47869646	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	.	NM_207499	exon3	c.C933T	p.S311S	TTTCTAGCTTGAG	.	62.0	36.0	46.0	0.0	.	.	.	.	Atlas-SNP
IL17A	3605	hgsc.bcm.edu	hg19	6	52053894	52053894	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	IL17A	NM_002190	exon3	c.A272T	p.E91V	TCTGGGAGGCAAA	.	110.0	37.0	69.0	0.0	.	28	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	66115107	66115107	+	Missense_Mutation	SNP	A	A	G	rs149421359		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	EYS	NM_001142801	exon6	c.T1016C	p.V339A	CATGGTACTAATG	.	243.0	123.0	172.0	0.0	.	527	.	A|1.000;G|0.000	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75799957	75799957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	COL12A1	NM_004370	exon63	c.G8810T	p.S2937I	TTGCGACTGGACT	.	60.0	17.0	47.0	0.0	.	385	.	.	Atlas-SNP
ASCC3	10973	hgsc.bcm.edu	hg19	6	101054670	101054670	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ASCC3	NM_006828	exon32	c.G4990T	p.G1664X	CTGTTCCCTTAAT	.	67.0	30.0	87.0	0.0	.	205	.	.	Atlas-SNP
ASCC3	10973	hgsc.bcm.edu	hg19	6	101054671	101054671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ASCC3	NM_006828	exon32	c.G4989T	p.K1663N	TGTTCCCTTAATA	.	67.0	30.0	86.0	0.0	.	205	.	.	Atlas-SNP
IGF2BP3	10643	hgsc.bcm.edu	hg19	7	23391100	23391100	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	IGF2BP3	NM_006547	exon6	c.A507G	p.R169R	GCGACCTCGGGGC	.	53.0	9.0	39.0	0.0	.	71	.	.	Atlas-SNP
PPP1R17	10842	hgsc.bcm.edu	hg19	7	31732136	31732136	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	.	NM_006658	exon2	c.A81T	p.L27F	CCACTTAGGTAAA	.	63.0	40.0	73.0	0.0	.	.	.	.	Atlas-SNP
DBNL	28988	hgsc.bcm.edu	hg19	7	44089828	44089828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	DBNL	NM_001122956	exon2	c.C88T	p.L30F	AGGGCTCTCTTTA	.	99.0	24.0	82.0	0.0	.	26	.	.	Atlas-SNP
NACAD	23148	hgsc.bcm.edu	hg19	7	45124713	45124713	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	NACAD	NM_001146334	exon2	c.A1066T	p.S356C	ACGTGCTGTCCTC	.	141.0	42.0	99.0	0.0	.	44	.	.	Atlas-SNP
FBXL13	222235	hgsc.bcm.edu	hg19	7	102603993	102603993	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	FBXL13	NM_001111038	exon8	c.T711A	p.T237T	TCTGAAAGTTTTG	.	45.0	11.0	46.0	0.0	.	65	.	.	Atlas-SNP
LAMB1	3912	hgsc.bcm.edu	hg19	7	107635345	107635345	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	LAMB1	NM_002291	exon5	c.T410G	p.I137R	GTCATTATGAGAT	.	43.0	23.0	49.0	0.0	.	185	.	.	Atlas-SNP
LMOD2	442721	hgsc.bcm.edu	hg19	7	123303032	123303032	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	LMOD2	NM_207163	exon2	c.A1392G	p.K464K	CATCAAACAACAG	.	128.0	59.0	151.0	0.0	.	62	.	.	Atlas-SNP
CALU	813	hgsc.bcm.edu	hg19	7	128407568	128407568	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	CALU	NM_001199671	exon7	c.A726T	p.R242R	AGAGCGAGAGCAG	.	115.0	52.0	179.0	0.0	.	42	.	.	Atlas-SNP
TNPO3	23534	hgsc.bcm.edu	hg19	7	128612495	128612495	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	TNPO3_ENST00000393245,rectum,carcinoma,0,2	TNPO3	NM_012470	exon19	c.A2415T	p.T805T	TACCCCTGTATGA	.	49.0	19.0	62.0	0.0	.	148	.	.	Atlas-SNP
ADCK2	90956	hgsc.bcm.edu	hg19	7	140373721	140373721	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ADCK2	NM_052853	exon1	c.C591T	p.I197I	GAGCATCCTCTCT	.	36.0	13.0	56.0	0.0	.	37	.	.	Atlas-SNP
KEL	3792	hgsc.bcm.edu	hg19	7	142639612	142639612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	KEL	NM_000420	exon18	c.A1946G	p.Y649C	TTGCTGTATGCCT	.	45.0	27.0	54.0	0.0	.	128	.	.	Atlas-SNP
NPM2	10361	hgsc.bcm.edu	hg19	8	21891622	21891622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	NPM2	NM_182795	exon6	c.G367T	p.A123S	ACAGAAGCATCAG	.	62.0	27.0	38.0	0.0	.	12	.	.	Atlas-SNP
KLHL38	340359	hgsc.bcm.edu	hg19	8	124658143	124658143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	KLHL38	NM_001081675	exon3	c.G1582A	p.G528R	GCCGCCCGCCCGT	.	108.0	59.0	103.0	0.0	.	81	.	.	Atlas-SNP
ANXA13	312	hgsc.bcm.edu	hg19	8	124693593	124693593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ANXA13	NM_001003954	exon12	c.C961A	p.L321I	CCTGAAGGTCCAC	.	49.0	7.0	56.0	0.0	.	38	.	.	Atlas-SNP
FER1L6	654463	hgsc.bcm.edu	hg19	8	125072802	125072802	+	Missense_Mutation	SNP	G	G	T	rs373037712		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	FER1L6	NM_001039112	exon24	c.G2999T	p.G1000V	TCTGGGGAGTTCG	.	91.0	13.0	81.0	0.0	.	268	.	.	Atlas-SNP
HSF1	3297	hgsc.bcm.edu	hg19	8	145533158	145533158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	HSF1	NM_005526	exon3	c.G244T	p.V82F	AAAGTGGTCCACA	.	204.0	118.0	175.0	1.0	.	29	.	.	Atlas-SNP
LRRC24	441381	hgsc.bcm.edu	hg19	8	145748008	145748008	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	LRRC24	NM_001024678	exon5	c.G1393C	p.E465Q	CGCGCTCGTCGCG	.	92.0	25.0	91.0	0.0	.	11	.	.	Atlas-SNP
FOCAD	54914	hgsc.bcm.edu	hg19	9	20944683	20944683	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	.	NM_017794	exon31	c.A3465T	p.Q1155H	CAGCCAAATGCAG	.	100.0	25.0	74.0	0.0	.	.	.	.	Atlas-SNP
C9orf57	138240	hgsc.bcm.edu	hg19	9	74671740	74671740	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	C9orf57	NM_001128618	exon3	c.A183T	p.T61T	AGGTTTTGTCTGG	.	78.0	54.0	60.0	0.0	.	16	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79324389	79324389	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	PRUNE2	NM_015225	exon8	c.T2801A	p.L934Q	GGAACTAGGACAT	.	98.0	63.0	94.0	0.0	.	331	.	.	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	hg19	9	84606346	84606346	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	.	NM_001001670	exon4	c.T961A	p.L321M	ACCATCTTGAAGA	.	142.0	98.0	132.0	0.0	.	.	.	.	Atlas-SNP
EPB41L4B	54566	hgsc.bcm.edu	hg19	9	111979288	111979288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	EPB41L4B	NM_019114	exon16	c.A1547G	p.H516R	GAGTGGTGCTGGT	.	105.0	27.0	86.0	0.0	.	111	.	.	Atlas-SNP
MUSK	4593	hgsc.bcm.edu	hg19	9	113459680	113459680	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	MUSK	NM_001166281	exon5	c.T562G	p.Y188D	GGACAGTATCGAT	.	157.0	47.0	122.0	0.0	.	112	.	.	Atlas-SNP
MUSK	4593	hgsc.bcm.edu	hg19	9	113459681	113459681	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	MUSK	NM_001166281	exon5	c.A563T	p.Y188F	GACAGTATCGATG	.	154.0	46.0	123.0	0.0	.	112	.	.	Atlas-SNP
LAMC3	10319	hgsc.bcm.edu	hg19	9	133936495	133936495	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	LAMC3	NM_006059	exon13	c.T2232A	p.P744P	CAACCCTTTCGCG	.	43.0	33.0	34.0	0.0	.	167	.	.	Atlas-SNP
KCNT1	57582	hgsc.bcm.edu	hg19	9	138662770	138662770	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	KCNT1	NM_020822	exon18	c.C1837G	p.R613G	GGGCCCCGGCACA	.	165.0	61.0	142.0	0.0	.	139	.	.	Atlas-SNP
CCDC3	83643	hgsc.bcm.edu	hg19	10	13040480	13040480	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	CCDC3	NM_031455	exon2	c.G407T	p.G136V	TTGACTCCGTGAG	.	96.0	23.0	70.0	0.0	.	27	.	.	Atlas-SNP
FAM188A	80013	hgsc.bcm.edu	hg19	10	15863696	15863696	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	FAM188A	NM_024948	exon9	c.G760C	p.V254L	ATCCTACTGCTGC	.	126.0	71.0	79.0	0.0	.	44	.	.	Atlas-SNP
HNRNPF	3185	hgsc.bcm.edu	hg19	10	43883327	43883327	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	HNRNPF	NM_001098204	exon4	c.G6T	p.M2I	GCCCAGCATCATG	.	75.0	43.0	85.0	0.0	.	57	.	.	Atlas-SNP
DLG5	9231	hgsc.bcm.edu	hg19	10	79553847	79553847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	DLG5	NM_004747	exon31	c.G5575A	p.D1859N	CCTTGTCCCTCAG	.	70.0	47.0	45.0	0.0	.	154	.	.	Atlas-SNP
C10orf99	387695	hgsc.bcm.edu	hg19	10	85933619	85933619	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	C10orf99	NM_207373	exon1	c.A12T	p.L4L	GCTTCTAGTCCTT	.	76.0	18.0	56.0	0.0	.	8	.	.	Atlas-SNP
TTC40	54777	hgsc.bcm.edu	hg19	10	134693042	134693042	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	TTC40	NM_001200049	exon29	c.T3893A	p.L1298Q	GCCTCCAGCTGCC	.	130.0	70.0	158.0	0.0	.	100	.	.	Atlas-SNP
KNDC1	85442	hgsc.bcm.edu	hg19	10	135020434	135020434	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	KNDC1	NM_152643	exon19	c.A3556T	p.S1186C	TTCCTCAGCTTGG	.	161.0	82.0	159.0	0.0	.	155	.	.	Atlas-SNP
OR51G2	81282	hgsc.bcm.edu	hg19	11	4936771	4936771	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	OR51G2	NM_001005238	exon1	c.G123T	p.L41L	GGAAACCAGATAC	.	109.0	68.0	106.0	0.0	.	70	.	.	Atlas-SNP
OR51A2	401667	hgsc.bcm.edu	hg19	11	4976935	4976935	+	Silent	SNP	A	A	T	rs78255170	alternate_allele	TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	OR51A2	NM_001004748	exon1	c.T9A	p.I3I	GTTGATAATGGAC	.	304.0	77.0	245.0	0.0	.	40	.	.	Atlas-SNP
OR10A5	144124	hgsc.bcm.edu	hg19	11	6866988	6866988	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	OR10A5	NM_178168	exon1	c.G75C	p.Q25H	AATACAGTCATTG	.	133.0	8.0	105.0	0.0	.	48	.	.	Atlas-SNP
ABCC8	6833	hgsc.bcm.edu	hg19	11	17464328	17464328	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ABCC8	NM_000352	exon10	c.G1569A	p.E523E	GGTCGTCTCCACC	.	77.0	19.0	50.0	0.0	.	170	.	.	Atlas-SNP
OR5R1	219479	hgsc.bcm.edu	hg19	11	56184984	56184984	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	OR5R1,colon,carcinoma,0,1	OR5R1	NM_001004744	exon1	c.G725C	p.G242A	TGGGAGCCACAGG	.	144.0	32.0	121.0	0.0	.	83	.	.	Atlas-SNP
TMEM132A	54972	hgsc.bcm.edu	hg19	11	60703650	60703650	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	TMEM132A	NM_017870	exon11	c.T2346A	p.A782A	CCCTGCTTGGAGC	.	61.0	32.0	77.0	0.0	.	135	.	.	Atlas-SNP
LGALS12	85329	hgsc.bcm.edu	hg19	11	63283717	63283717	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	LGALS12	NM_001142536	exon8	c.838-2A>T	.	TTTCCCAGGTGCT	.	26.0	7.0	27.0	0.0	.	35	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103339360	103339360	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	DYNC2H1	NM_001080463	exon89	c.A12713T	p.Q4238L	GAAATCAACTTTC	.	104.0	67.0	86.0	0.0	.	246	.	.	Atlas-SNP
SORL1	6653	hgsc.bcm.edu	hg19	11	121475846	121475846	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	SORL1	NM_003105	exon34	c.A4676T	p.Q1559L	AAGTACAGAATCT	.	70.0	47.0	42.0	0.0	.	218	.	.	Atlas-SNP
OR6M1	390261	hgsc.bcm.edu	hg19	11	123676807	123676807	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	OR6M1	NM_001005325	exon1	c.T251A	p.L84Q	TCTCCTAGGAGGC	.	103.0	52.0	83.0	0.0	.	60	.	.	Atlas-SNP
B4GALNT3	283358	hgsc.bcm.edu	hg19	12	663011	663011	+	Missense_Mutation	SNP	G	G	T	rs138791810	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	B4GALNT3	NM_173593	exon14	c.G1922T	p.R641L	GTGCCCGGAATCT	.	177.0	36.0	117.0	0.0	.	64	.	G|0.998;A|0.002	Atlas-SNP
ERC1	23085	hgsc.bcm.edu	hg19	12	1553897	1553897	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ERC1	NM_178040	exon18	c.A3194T	p.Q1065L	AGCTGCAGAAGAT	.	135.0	59.0	87.0	0.0	.	95	.	.	Atlas-SNP
PTPN6	5777	hgsc.bcm.edu	hg19	12	7064872	7064872	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	PTPN6	NM_080548	exon7	c.A803T	p.Q268L	AAGGGCAGCGGCC	.	167.0	71.0	115.0	0.0	.	42	.	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49416526	49416526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	MLL2	NM_003482	exon51	c.G16185T	p.W5395C	GTTCTTCCATTCG	.	168.0	77.0	114.0	0.0	.	1173	.	.	Atlas-SNP
ACVRL1	94	hgsc.bcm.edu	hg19	12	52309133	52309133	+	Silent	SNP	T	T	A	rs370666061	alternate_allele	TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ACVRL1	NM_000020	exon7	c.T897A	p.A299A	TCTGGCTCTGAGG	.	102.0	51.0	74.0	0.0	.	60	.	.	Atlas-SNP
KRT1	3848	hgsc.bcm.edu	hg19	12	53069093	53069093	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	KRT1	NM_006121	exon9	c.G1819C	p.G607R	AGCTCCCGCCGCC	.	96.0	32.0	80.0	0.0	.	110	.	.	Atlas-SNP
OR6C65	403282	hgsc.bcm.edu	hg19	12	55795077	55795077	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	OR6C65	NM_001005518	exon1	c.T765A	p.F255L	CATTTTTATGTGT	.	92.0	26.0	94.0	0.0	.	44	.	.	Atlas-SNP
OR6C65	403282	hgsc.bcm.edu	hg19	12	55795161	55795161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	OR6C65	NM_001005518	exon1	c.G849T	p.L283F	TATGTTGAATCCC	.	44.0	17.0	42.0	0.0	.	44	.	.	Atlas-SNP
SOCS2	8835	hgsc.bcm.edu	hg19	12	93968804	93968804	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	SOCS2	NM_001270470	exon3	c.A446T	p.H149L	CTGTTCACCTTTA	.	115.0	73.0	116.0	0.0	.	23	.	.	Atlas-SNP
NTN4	59277	hgsc.bcm.edu	hg19	12	96104336	96104336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	NTN4	NM_021229	exon5	c.A1063G	p.S355G	CACCACTACGATT	.	74.0	16.0	85.0	0.0	.	67	.	.	Atlas-SNP
SELPLG	6404	hgsc.bcm.edu	hg19	12	109017504	109017504	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	SELPLG	NM_001206609	exon2	c.A628T	p.T210S	GTGCAGTGGTCTG	.	92.0	26.0	99.0	0.0	.	138	.	.	Atlas-SNP
DHX37	57647	hgsc.bcm.edu	hg19	12	125435079	125435079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	DHX37	NM_032656	exon23	c.G3001A	p.V1001I	ACTGGACCTCCAC	.	66.0	22.0	120.0	0.0	.	114	.	.	Atlas-SNP
SACS	26278	hgsc.bcm.edu	hg19	13	23909572	23909572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	SACS	NM_014363	exon10	c.C8443A	p.L2815I	TAGTAAGATTTCC	.	94.0	14.0	43.0	0.0	.	871	.	.	Atlas-SNP
SUPT20H	55578	hgsc.bcm.edu	hg19	13	37621713	37621713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	.	NM_001014286	exon5	c.G124T	p.D42Y	ACAAGTCATAAAG	.	145.0	95.0	398.0	0.0	.	.	.	.	Atlas-SNP
DIAPH3	81624	hgsc.bcm.edu	hg19	13	60544097	60544097	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	DIAPH3	NM_001042517	exon17	c.A2055T	p.T685T	ACAAAATGTATTC	.	236.0	184.0	142.0	0.0	.	139	.	.	Atlas-SNP
NIN	51199	hgsc.bcm.edu	hg19	14	51224347	51224347	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	NIN	NM_020921	exon18	c.A3401T	p.Q1134L	TCTACTTGCTTCG	.	81.0	67.0	98.0	0.0	.	475	.	.	Atlas-SNP
KTN1	3895	hgsc.bcm.edu	hg19	14	56113703	56113703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	KTN1	NM_004986	exon19	c.G2185A	p.V729I	AAGGATGTTGTGG	.	43.0	34.0	57.0	0.0	.	147	.	.	Atlas-SNP
AP5M1	55745	hgsc.bcm.edu	hg19	14	57741303	57741303	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	.	NM_018229	exon2	c.A416C	p.Q139P	GGATACAGGATTT	.	65.0	47.0	78.0	0.0	.	.	.	.	Atlas-SNP
ZFYVE26	23503	hgsc.bcm.edu	hg19	14	68219127	68219127	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ZFYVE26	NM_015346	exon40	c.A7305T	p.A2435A	TTTGGCTGCCATG	.	72.0	43.0	72.0	0.0	.	223	.	.	Atlas-SNP
JAG2	3714	hgsc.bcm.edu	hg19	14	105609336	105609336	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	JAG2	NM_002226	exon26	c.T3413C	p.I1138T	CGCTCAATGGGGT	.	10.0	9.0	22.0	0.0	.	69	.	.	Atlas-SNP
PLA2G4F	255189	hgsc.bcm.edu	hg19	15	42442915	42442915	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	PLA2G4F	NM_213600	exon8	c.T662A	p.L221Q	GGCTGCAGGGGCA	.	45.0	11.0	62.0	0.0	.	75	.	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54305537	54305537	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	UNC13C	NM_001080534	exon1	c.A437T	p.H146L	CAACACACACAAT	.	126.0	36.0	117.0	0.0	.	674	.	.	Atlas-SNP
ADAMTS7	11173	hgsc.bcm.edu	hg19	15	79066995	79066995	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ADAMTS7	NM_014272	exon12	c.T1847A	p.L616Q	GTGTGCAGCTGGC	.	12.0	5.0	36.0	0.0	.	142	.	.	Atlas-SNP
RGMA	56963	hgsc.bcm.edu	hg19	15	93588391	93588391	+	Missense_Mutation	SNP	G	G	A	rs201783150	by1000genomes;alternate_allele	TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	RGMA	NM_001166283	exon4	c.C1214T	p.A405V	TCCAACGCGTAGT	.	87.0	41.0	113.0	0.0	.	49	.	G|1.000;T|0.000	Atlas-SNP
DOC2A	8448	hgsc.bcm.edu	hg19	16	30018203	30018203	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	DOC2A	NM_003586	exon8	c.T781A	p.Y261N	AGCTGTAGCTGAG	.	92.0	53.0	109.0	0.0	.	40	.	.	Atlas-SNP
ITGAD	3681	hgsc.bcm.edu	hg19	16	31429500	31429500	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ITGAD	NM_005353	exon21	c.T2604A	p.H868Q	CTTCCATGAGGGC	.	96.0	26.0	71.0	0.0	.	154	.	.	Atlas-SNP
ADAT1	23536	hgsc.bcm.edu	hg19	16	75642206	75642206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ADAT1	NM_012091	exon9	c.C1205T	p.A402V	GGAACTGCACTCC	.	79.0	20.0	59.0	0.0	.	45	.	.	Atlas-SNP
ARRB2	409	hgsc.bcm.edu	hg19	17	4619957	4619957	+	Silent	SNP	T	T	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ARRB2	NM_001257328	exon5	c.T411G	p.S137S	TGTGTCTGGGGTG	.	24.0	12.0	30.0	0.0	.	30	.	.	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7643760	7643760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	DNAH2	NM_020877	exon9	c.C1399A	p.L467M	AAGGACCTGGAGG	.	59.0	49.0	106.0	0.0	.	498	.	.	Atlas-SNP
MYH4	4622	hgsc.bcm.edu	hg19	17	10348322	10348322	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	MYH4	NM_017533	exon37	c.A5437C	p.K1813Q	GCTTCTTCCCACC	.	76.0	57.0	91.0	0.0	.	349	.	.	Atlas-SNP
MYOCD	93649	hgsc.bcm.edu	hg19	17	12569544	12569544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	MYOCD	NM_001146312	exon1	c.G39T	p.R13S	GATTAGGAGCAAG	.	46.0	39.0	77.0	0.0	.	291	.	.	Atlas-SNP
RAPGEFL1	51195	hgsc.bcm.edu	hg19	17	38348509	38348509	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	RAPGEFL1	NM_016339	exon11	c.C1032T	p.N344N	TGAGAACCTGACG	.	42.0	5.0	70.0	0.0	.	31	.	.	Atlas-SNP
KRT12	3859	hgsc.bcm.edu	hg19	17	39022937	39022937	+	Missense_Mutation	SNP	T	T	A	rs377161982		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	KRT12	NM_000223	exon1	c.A502T	p.T168S	CTGCAGTCCCAGT	.	98.0	47.0	104.0	0.0	.	53	.	.	Atlas-SNP
KCNH4	23415	hgsc.bcm.edu	hg19	17	40330402	40330402	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	KCNH4	NM_012285	exon3	c.A404T	p.Q135L	CCACTCTGAGTGA	.	91.0	37.0	117.0	0.0	.	105	.	.	Atlas-SNP
TRIM47	91107	hgsc.bcm.edu	hg19	17	73871178	73871178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	TRIM47	NM_033452	exon6	c.G1303A	p.D435N	CTGTGTCGCTGTC	.	146.0	12.0	42.0	0.0	.	40	.	.	Atlas-SNP
QRICH2	84074	hgsc.bcm.edu	hg19	17	74288478	74288478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	QRICH2	NM_032134	exon4	c.A1832G	p.D611G	TGCTGATCCACTC	.	138.0	10.0	77.0	0.0	.	143	.	.	Atlas-SNP
RAC3	5881	hgsc.bcm.edu	hg19	17	79991460	79991460	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	RAC3	NM_005052	exon5	c.A433T	p.M145L	CTGGCCATGGCCC	.	375.0	17.0	75.0	0.0	.	8	.	.	Atlas-SNP
TUBB6	84617	hgsc.bcm.edu	hg19	18	12310993	12310993	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	TUBB6	NM_032525	exon3	c.T218A	p.M73K	GCACCATGGACAG	.	96.0	44.0	78.0	0.0	.	35	.	.	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	hg19	18	21474874	21474874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	LAMA3	NM_001127717	exon44	c.G5465A	p.C1822Y	CAGATTGCGACAG	.	52.0	14.0	38.0	0.0	.	397	.	.	Atlas-SNP
KIAA1328	57536	hgsc.bcm.edu	hg19	18	34752988	34752988	+	Silent	SNP	A	A	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	KIAA1328	NM_020776	exon9	c.A1467C	p.G489G	AACAGGAAGCCTA	.	95.0	9.0	89.0	0.0	.	39	.	.	Atlas-SNP
LOXHD1	125336	hgsc.bcm.edu	hg19	18	44140460	44140460	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	LOXHD1	NM_144612	exon19	c.A2647T	p.T883S	CGCCCGTGTGCCC	.	727.0	219.0	658.0	0.0	.	367	.	.	Atlas-SNP
PHLPP1	23239	hgsc.bcm.edu	hg19	18	60642658	60642658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	PHLPP1	NM_194449	exon16	c.G3784A	p.G1262S	AAGCTTGGTGGTG	.	83.0	25.0	56.0	0.0	.	164	.	.	Atlas-SNP
SERPINB13	5275	hgsc.bcm.edu	hg19	18	61256029	61256029	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	SERPINB13	NM_012397	exon2	c.T128A	p.L43Q	TCCTCCTGGGGAC	.	48.0	27.0	41.0	0.0	.	51	.	.	Atlas-SNP
RTTN	25914	hgsc.bcm.edu	hg19	18	67671402	67671402	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	RTTN	NM_173630	exon49	c.C6666A	p.L2222L	ATTAAGGAGCTGC	.	66.0	12.0	67.0	0.0	.	184	.	.	Atlas-SNP
C19orf26	255057	hgsc.bcm.edu	hg19	19	1233486	1233486	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	C19orf26	NM_152769	exon8	c.T918C	p.Y306Y	CTTGAAATAGGGG	.	156.0	65.0	108.0	0.0	.	31	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9087179	9087179	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	MUC16	NM_024690	exon1	c.A4636T	p.S1546C	TCACACTGGTCCA	.	156.0	77.0	127.0	0.0	.	4315	.	.	Atlas-SNP
ZSWIM4	65249	hgsc.bcm.edu	hg19	19	13936403	13936403	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ZSWIM4	NM_023072	exon11	c.A1904C	p.Q635P	CCATCCAGCAGAA	.	66.0	15.0	52.0	0.0	.	69	.	.	Atlas-SNP
ZSWIM4	65249	hgsc.bcm.edu	hg19	19	13936406	13936406	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ZSWIM4	NM_023072	exon11	c.A1907C	p.Q636P	TCCAGCAGAACAT	.	65.0	15.0	51.0	0.0	.	69	.	.	Atlas-SNP
NANOS3	342977	hgsc.bcm.edu	hg19	19	13988410	13988410	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	NANOS3	NM_001098622	exon1	c.C348A	p.G116G	GTGCGGCGCCACA	.	46.0	17.0	30.0	0.0	.	19	.	.	Atlas-SNP
ZNF383	163087	hgsc.bcm.edu	hg19	19	37733636	37733636	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ZNF383	NM_152604	exon5	c.A498T	p.E166D	TAATGAAGACAGA	.	150.0	63.0	116.0	0.0	.	42	.	.	Atlas-SNP
CATSPERG	57828	hgsc.bcm.edu	hg19	19	38857882	38857882	+	Silent	SNP	C	C	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	CATSPERG	NM_021185	exon23	c.C2700G	p.R900R	CAGCCGCCTGAAG	.	49.0	17.0	22.0	0.0	.	121	.	.	Atlas-SNP
FCGBP	8857	hgsc.bcm.edu	hg19	19	40398324	40398324	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	FCGBP	NM_003890	exon14	c.A6643T	p.N2215Y	CCTGGTTGTAGTT	.	172.0	51.0	131.0	0.0	.	416	.	.	Atlas-SNP
BSPH1	100131137	hgsc.bcm.edu	hg19	19	48480713	48480713	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	BSPH1	NM_001128326	exon4	c.A173T	p.D58V	ATGCAGTCATAAT	.	90.0	52.0	94.0	0.0	.	6	.	.	Atlas-SNP
ZNF880	400713	hgsc.bcm.edu	hg19	19	52877651	52877651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ZNF880	NM_001145434	exon3	c.G239T	p.G80V	CAGGTGGCAGGGA	.	211.0	10.0	169.0	0.0	.	45	.	.	Atlas-SNP
NLRP2	55655	hgsc.bcm.edu	hg19	19	55495067	55495067	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	NLRP2	NM_017852	exon6	c.T2001A	p.T667T	TGTCACTGCGTCT	.	21.0	10.0	31.0	0.0	.	161	.	.	Atlas-SNP
SNTA1	6640	hgsc.bcm.edu	hg19	20	32026678	32026678	+	Silent	SNP	G	G	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	SNTA1	NM_003098	exon2	c.C465G	p.L155L	CTTCTTGAGGACC	.	155.0	26.0	81.0	0.0	.	35	.	.	Atlas-SNP
PREX1	57580	hgsc.bcm.edu	hg19	20	47268095	47268095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	PREX1	NM_020820	exon22	c.C2494T	p.R832W	TCAGCCGGGGACC	.	45.0	13.0	50.0	0.0	.	441	.	.	Atlas-SNP
ARFGAP1	55738	hgsc.bcm.edu	hg19	20	61919056	61919056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ARFGAP1	NM_175609	exon14	c.G1076A	p.C359Y	GGACGTGCGCGGA	.	116.0	30.0	102.0	0.0	.	38	.	.	Atlas-SNP
KCNQ2	3785	hgsc.bcm.edu	hg19	20	62038313	62038313	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	KCNQ2	NM_172107	exon17	c.A2303T	p.Q768L	TCCTCCTGCCGCA	.	224.0	124.0	180.0	0.0	.	201	.	.	Atlas-SNP
ADAMTS5	11096	hgsc.bcm.edu	hg19	21	28338522	28338522	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ADAMTS5	NM_007038	exon1	c.C189A	p.P63P	CGCCAGGGGGTGC	.	97.0	60.0	63.0	0.0	.	184	.	.	Atlas-SNP
TTC3	7267	hgsc.bcm.edu	hg19	21	38567975	38567975	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	TTC3	NM_001001894	exon42	c.5218-1G>A	.	CTCACAGGTTCAT	.	176.0	48.0	144.0	0.0	.	182	.	.	Atlas-SNP
TTC3	7267	hgsc.bcm.edu	hg19	21	38567997	38567997	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	TTC3	NM_001001894	exon42	c.G5239T	p.E1747X	CTCCCTGAGTCTT	.	168.0	44.0	151.0	0.0	.	182	.	.	Atlas-SNP
KRTAP10-10	353333	hgsc.bcm.edu	hg19	21	46057580	46057580	+	Silent	SNP	G	G	T	rs150687639	alternate_allele	TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	KRTAP10-10	NM_181688	exon1	c.G246T	p.P82P	CCAGCCGGATTGC	.	36.0	14.0	31.0	0.0	.	37	.	G|0.999;A|0.001	Atlas-SNP
SCARF2	91179	hgsc.bcm.edu	hg19	22	20784091	20784091	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	SCARF2	NM_182895	exon7	c.A1232T	p.H411L	GCGCCGTGGAGTC	.	88.0	40.0	118.0	0.0	.	23	.	.	Atlas-SNP
KLHL22	84861	hgsc.bcm.edu	hg19	22	20819206	20819206	+	Missense_Mutation	SNP	C	C	T	rs372979261		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	KLHL22,colon,carcinoma,0,1	KLHL22	NM_032775	exon4	c.G1051A	p.V351I	AGTATACGAAGTT	.	31.0	10.0	48.0	0.0	.	52	.	.	Atlas-SNP
PLXNB2	23654	hgsc.bcm.edu	hg19	22	50722376	50722376	+	Silent	SNP	C	C	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	PLXNB2	NM_012401	exon14	c.G2307C	p.L769L	CCGGCACAGGCTG	.	32.0	10.0	40.0	0.0	.	172	.	.	Atlas-SNP
TBL1X	6907	hgsc.bcm.edu	hg19	X	9677307	9677307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	TBL1X	NM_001139466	exon14	c.A1256G	p.K419R	CCATCAAATGGGA	.	135.0	50.0	169.0	0.0	.	103	.	.	Atlas-SNP
PHF16	9767	hgsc.bcm.edu	hg19	X	46893038	46893038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	PHF16	NM_001077445	exon7	c.C703T	p.L235F	GGCATCCTCAAGG	.	186.0	9.0	118.0	0.0	.	72	.	.	Atlas-SNP
IQSEC2	23096	hgsc.bcm.edu	hg19	X	53279807	53279807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	IQSEC2	NM_001111125	exon5	c.C1951A	p.P651T	CTTCAGGGGCTGG	.	80.0	22.0	73.0	0.0	.	195	.	.	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53591649	53591649	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	HUWE1	NM_031407	exon51	c.T6915C	p.D2305D	ATCATGATCCTCC	.	78.0	23.0	71.0	0.0	.	724	.	.	Atlas-SNP
APEX2	27301	hgsc.bcm.edu	hg19	X	55026952	55026952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	APEX2	NM_014481	exon1	c.G97A	p.G33R	GCCGTGGGGCGCA	.	143.0	48.0	128.0	0.0	.	50	.	.	Atlas-SNP
MED12	9968	hgsc.bcm.edu	hg19	X	70354642	70354642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	MED12	NM_005120	exon35	c.C4807A	p.Q1603K	ATCTCGCAAGGTA	.	188.0	61.0	199.0	0.0	.	984	.	.	Atlas-SNP
LRCH2	57631	hgsc.bcm.edu	hg19	X	114404863	114404863	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	LRCH2	NM_001243963	exon6	c.A997T	p.S333C	ATTACCTGTCTGT	.	197.0	54.0	202.0	0.0	.	138	.	.	Atlas-SNP
ARHGAP36	158763	hgsc.bcm.edu	hg19	X	130215821	130215821	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ARHGAP36	NM_144967	exon2	c.T182A	p.L61Q	AGCGTCTGAAGCT	.	99.0	27.0	88.0	0.0	.	171	.	.	Atlas-SNP
SLITRK2	84631	hgsc.bcm.edu	hg19	X	144906061	144906061	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	SLITRK2	NM_001144005	exon5	c.A2118T	p.G706G	GGAAGGAGACCCA	.	171.0	53.0	149.0	0.0	.	221	.	.	Atlas-SNP
PLXNA3	55558	hgsc.bcm.edu	hg19	X	153690520	153690520	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	PLXNA3	NM_017514	exon4	c.G1187C	p.G396A	CTCTGGGAGGCCT	.	154.0	37.0	174.0	0.0	.	156	.	.	Atlas-SNP
LHFPL4	375323	hgsc.bcm.edu	hg19	3	9594117	9594130	+	Frame_Shift_Del	DEL	CGGTGAAGGAGCCC	CGGTGAAGGAGCCC	-	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	CGGTGAAGGAGCCC	CGGTGAAGGAGCCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	LHFPL4	NM_198560	exon2	c.235_248del	p.79_83del	.	.	101.0	11.0	107.0	0.0	.	34	.	.	Atlas-INDEL
OR6C65	403282	hgsc.bcm.edu	hg19	12	55795097	55795097	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	OR6C65,NS,carcinoma,0,1	OR6C65	NM_001005518	exon1	c.784delG	p.A262fs	.	.	83.0	26.0	84.0	0.0	.	44	.	.	Atlas-INDEL
KRTAP29-1	100533177	hgsc.bcm.edu	hg19	17	39458442	39458443	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	KRTAP29-1	NM_001257309	exon1	c.662_663del	p.221_221del	.	.	104.0	39.0	134.0	0.0	.	2	.	.	Atlas-INDEL
CBX4	8535	hgsc.bcm.edu	hg19	17	77808241	77808246	+	In_Frame_Del	DEL	GTGGTG	GTGGTG	-	rs3833850	alternate_allele	TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	GTGGTG	GTGGTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	CBX4	NM_003655	exon5	c.1196_1201del	p.399_401del	.	.	49.0	19.0	9.0	0.0	.	40	.	.	Atlas-INDEL
ELAVL2	1993	hgsc.bcm.edu	hg19	9	23731126	23731126	+	Splice_Site	DEL	A	A	-	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	ELAVL2	NM_004432	exon4	c.230-2T>-	.	.	.	50.0	11.0	31.0	0.0	.	80	.	.	Atlas-INDEL
FAM131C	348487	hgsc.bcm.edu	hg19	1	16390079	16390092	+	Frame_Shift_Del	DEL	GGGGTCCGCACCCT	GGGGTCCGCACCCT	-	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	GGGGTCCGCACCCT	GGGGTCCGCACCCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	FAM131C	NM_182623	exon2	c.63_76del	p.21_26del	.	.	65.0	17.0	100.0	0.0	.	21	.	.	Atlas-INDEL
TRPC6	7225	hgsc.bcm.edu	hg19	11	101375006	101375006	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	.	TRPC6	NM_004621	exon2	c.695delA	p.Y232fs	.	.	63.0	13.0	51.0	0.0	.	132	.	.	Atlas-INDEL
CDC42BPA	8476	hgsc.bcm.edu	hg19	1	227204675	227204675	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AADF-01A-11D-A40R-10	TCGA-DD-AADF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0	87a7ce38-2b8a-42a0-b22f-33534f342ff4	CDC42BPA_ENST00000366769,colon,carcinoma,0,3	CDC42BPA	NM_003607	exon32	c.4588delC	p.R1530fs	.	.	106.0	31.0	103.0	0.0	.	528	.	.	Atlas-INDEL
