Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
NPHP4	261734	hgsc.bcm.edu	hg19	1	6029260	6029260	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	NPHP4	NM_015102	exon4	c.C339T	p.V113V	CTCAGCGACCACT	.	148.0	59.0	115.0	0.0	.	119	.	.	Atlas-SNP
CAMTA1	23261	hgsc.bcm.edu	hg19	1	7796520	7796520	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	CAMTA1	NM_015215	exon13	c.G3183C	p.K1061N	CTCAAAGACTTTC	.	163.0	7.0	160.0	0.0	.	226	.	.	Atlas-SNP
VPS13D	55187	hgsc.bcm.edu	hg19	1	12359278	12359278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	VPS13D,NS,carcinoma,0,1	VPS13D	NM_015378	exon25	c.G6053T	p.R2018L	CCCAGCGCTGTTC	.	87.0	4.0	76.0	0.0	.	316	.	.	Atlas-SNP
C1orf158	93190	hgsc.bcm.edu	hg19	1	12820859	12820859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	C1orf158,NS,lymphoid_neoplasm,0,2	C1orf158	NM_152290	exon4	c.G560T	p.R187L	CCCATCGCCTGCA	.	76.0	18.0	70.0	0.0	.	28	.	.	Atlas-SNP
PRAMEF19	645414	hgsc.bcm.edu	hg19	1	13475241	13475241	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	PRAMEF18,NS,carcinoma,0,1	PRAMEF19	NM_001099790	exon3	c.G888A	p.E296E	CAATGTCTCCAAC	.	272.0	17.0	263.0	0.0	.	6	.	.	Atlas-SNP
PHC2	1912	hgsc.bcm.edu	hg19	1	33832725	33832725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	PHC2	NM_198040	exon6	c.T968C	p.I323T	GGTGCAATGAGGG	.	74.0	5.0	62.0	0.0	.	78	.	.	Atlas-SNP
FOXE3	2301	hgsc.bcm.edu	hg19	1	47882609	47882609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	FOXE3	NM_012186	exon1	c.C622A	p.P208T	GCCGGACCGGGCC	.	26.0	8.0	21.0	0.0	.	8	.	.	Atlas-SNP
USP24	23358	hgsc.bcm.edu	hg19	1	55624658	55624658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	USP24	NM_015306	exon10	c.C1120T	p.R374C	GGAAGCGCATGCA	.	253.0	88.0	242.0	0.0	.	323	.	.	Atlas-SNP
INADL	10207	hgsc.bcm.edu	hg19	1	62550246	62550246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	INADL	NM_176877	exon33	c.G4303A	p.E1435K	GGACAGGAAATGA	.	150.0	10.0	131.0	0.0	.	179	.	.	Atlas-SNP
CSDE1	7812	hgsc.bcm.edu	hg19	1	115267860	115267860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	CSDE1	NM_001242891	exon16	c.G1873A	p.V625M	TGTTCACTTTTTC	.	128.0	35.0	118.0	0.0	.	145	.	.	Atlas-SNP
RPTN	126638	hgsc.bcm.edu	hg19	1	152128252	152128252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	RPTN	NM_001122965	exon3	c.G1323T	p.Q441H	GTCTGGCTGACCA	.	199.0	44.0	108.0	0.0	.	123	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186113435	186113435	+	Silent	SNP	A	A	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	HMCN1	NM_031935	exon90	c.A14055C	p.A4685A	TGGAGCAGAAACA	.	165.0	9.0	123.0	0.0	.	797	.	.	Atlas-SNP
NLRP3	114548	hgsc.bcm.edu	hg19	1	247587388	247587388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	NLRP3	NM_183395	exon3	c.C643A	p.H215N	GATGAGCATTCTG	.	223.0	37.0	172.0	0.0	.	286	.	.	Atlas-SNP
TPO	7173	hgsc.bcm.edu	hg19	2	1499810	1499810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	TPO	NM_001206744	exon12	c.C2056A	p.L686M	CGTGAGCTGGAGA	.	67.0	22.0	61.0	0.0	.	224	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21228569	21228569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	APOB	NM_000384	exon26	c.A11171G	p.K3724R	AAAACTTTTACAG	.	83.0	31.0	90.0	0.0	.	761	.	.	Atlas-SNP
HEATR5B	54497	hgsc.bcm.edu	hg19	2	37297440	37297440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	HEATR5B	NM_019024	exon7	c.A860G	p.K287R	CCGCTCTTTAAGA	.	136.0	9.0	135.0	0.0	.	185	.	.	Atlas-SNP
ZFP36L2	678	hgsc.bcm.edu	hg19	2	43452453	43452453	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	ZFP36L2	NM_006887	exon2	c.G490T	p.E164X	CGCTCTCCTCGAA	.	58.0	21.0	36.0	0.0	.	56	.	.	Atlas-SNP
USP34	9736	hgsc.bcm.edu	hg19	2	61542016	61542016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	USP34	NM_014709	exon24	c.A3376G	p.I1126V	CATTAATATAATA	.	287.0	12.0	298.0	0.0	.	334	.	.	Atlas-SNP
TEKT4	150483	hgsc.bcm.edu	hg19	2	95542383	95542383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	TEKT4	NM_144705	exon6	c.C1177A	p.L393I	CGCAACCTCGAGG	.	23.0	8.0	19.0	0.0	.	72	.	.	Atlas-SNP
CNGA3	1261	hgsc.bcm.edu	hg19	2	99012463	99012463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	CNGA3	NM_001298	exon8	c.G830T	p.R277L	TCAACCGCCTACT	.	200.0	48.0	192.0	0.0	.	118	.	.	Atlas-SNP
ARHGEF4	50649	hgsc.bcm.edu	hg19	2	131801059	131801059	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	ARHGEF4	NM_032995	exon11	c.T1502A	p.I501N	AACTCATCTACTC	.	93.0	30.0	82.0	0.0	.	89	.	.	Atlas-SNP
HOXD4	3233	hgsc.bcm.edu	hg19	2	177016412	177016412	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	HOXD4,NS,carcinoma,0,1	HOXD4	NM_014621	exon1	c.C51G	p.F17L	CAAGTTCCCTCCG	.	178.0	72.0	177.0	0.0	.	32	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196765131	196765131	+	Silent	SNP	G	G	T	rs376085913	alternate_allele	TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	DNAH7	NM_018897	exon28	c.C4423A	p.R1475R	GTGGTCGAGCAGT	.	188.0	71.0	183.0	0.0	.	512	.	.	Atlas-SNP
KCTD18	130535	hgsc.bcm.edu	hg19	2	201357908	201357908	+	Missense_Mutation	SNP	G	G	T	rs146790839	alternate_allele	TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	KCTD18	NM_152387	exon6	c.C751A	p.P251T	GAATTGGAGCCAT	.	78.0	28.0	80.0	0.0	.	44	.	G|1.000;A|0.000	Atlas-SNP
BMPR2	659	hgsc.bcm.edu	hg19	2	203383670	203383670	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	BMPR2	NM_001204	exon6	c.G747A	p.V249V	CAGAGTGCCTTTG	.	137.0	9.0	132.0	0.0	.	142	.	.	Atlas-SNP
MDH1B	130752	hgsc.bcm.edu	hg19	2	207622077	207622077	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	MDH1B	NM_001039845	exon3	c.T154A	p.C52S	TTTCACACACATC	.	41.0	19.0	55.0	0.0	.	89	.	.	Atlas-SNP
PRKAG3	53632	hgsc.bcm.edu	hg19	2	219689003	219689003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	PRKAG3	NM_017431	exon12	c.T1295C	p.L432P	CAGGAAAGGACTC	.	133.0	7.0	137.0	0.0	.	47	.	.	Atlas-SNP
KCNJ13	3769	hgsc.bcm.edu	hg19	2	233633278	233633278	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	KCNJ13	NM_002242	exon3	c.T706A	p.F236I	TGAAGAATGGACA	.	194.0	60.0	180.0	0.0	.	18	.	.	Atlas-SNP
GIGYF2	26058	hgsc.bcm.edu	hg19	2	233674449	233674449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	GIGYF2	NM_001103147	exon18	c.G1889T	p.R630L	AGGAACGACTGAC	.	297.0	127.0	257.0	0.0	.	288	.	.	Atlas-SNP
USP40	55230	hgsc.bcm.edu	hg19	2	234399852	234399852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	USP40	NM_018218	exon25	c.G3006T	p.E1002D	TGAGATCTCTATG	.	400.0	158.0	379.0	1.0	.	174	.	.	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	hg19	3	4853115	4853115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	ITPR1	NM_001168272	exon55	c.A7394G	p.D2465G	AAGTAGATAGGCT	.	68.0	36.0	66.0	0.0	.	659	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	G	rs121913403	bycluster	TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	CTNNB1,gallbladder,other,0,1	CTNNB1	NM_001098209	exon3	c.C110G	p.S37C	TCCATTCTGGTGC	.	142.0	44.0	140.0	0.0	.	4904	.	.	Atlas-SNP
CCR5	1234	hgsc.bcm.edu	hg19	3	46414720	46414720	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	CCR5	NM_000579	exon3	c.T327C	p.F109F	CTATTTTATAGGC	.	127.0	51.0	113.0	0.0	.	128	.	.	Atlas-SNP
CADPS	8618	hgsc.bcm.edu	hg19	3	62459851	62459851	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	CADPS	NM_003716	exon24	c.A3474T	p.Q1158H	TACCTCTTGGCCC	.	60.0	17.0	44.0	0.0	.	387	.	.	Atlas-SNP
CADPS	8618	hgsc.bcm.edu	hg19	3	62459893	62459893	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	CADPS	NM_003716	exon24	c.C3432T	p.A1144A	AGCTTTGGCATCA	.	97.0	5.0	66.0	0.0	.	387	.	.	Atlas-SNP
C3orf17	25871	hgsc.bcm.edu	hg19	3	112729968	112729968	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	C3orf17	NM_015412	exon6	c.A837G	p.K279K	TTTAGCTTTTTTT	.	139.0	39.0	108.0	0.0	.	37	.	.	Atlas-SNP
TRPC1	7220	hgsc.bcm.edu	hg19	3	142522995	142522995	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	TRPC1	NM_001251845	exon11	c.T1934A	p.L645H	CAATGCTTCATAA	.	152.0	55.0	121.0	0.0	.	82	.	.	Atlas-SNP
IL12A	3592	hgsc.bcm.edu	hg19	3	159713248	159713248	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	IL12A	NM_000882	exon7	c.T664A	p.F222I	CCGGATTTTTATA	.	130.0	13.0	124.0	0.0	.	23	.	.	Atlas-SNP
FGF12	2257	hgsc.bcm.edu	hg19	3	192078328	192078328	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	FGF12	NM_004113	exon4	c.14-1G>A	.	GGGGTTCTGCAAA	.	124.0	49.0	120.0	0.0	.	88	.	.	Atlas-SNP
HTT	3064	hgsc.bcm.edu	hg19	4	3129224	3129224	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	HTT	NM_002111	exon12	c.A1636G	p.M546V	CCTGCCATGGACC	.	174.0	80.0	221.0	1.0	.	221	.	.	Atlas-SNP
PCDH7	5099	hgsc.bcm.edu	hg19	4	30921844	30921844	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	PCDH7	NM_032457	exon2	c.T3244A	p.C1082S	CAGAGTTGCTATG	.	123.0	49.0	141.0	0.0	.	215	.	.	Atlas-SNP
GABRB1	2560	hgsc.bcm.edu	hg19	4	47163447	47163447	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	GABRB1	NM_000812	exon4	c.T422A	p.I141N	GAATGATTCGACT	.	72.0	5.0	72.0	0.0	.	107	.	.	Atlas-SNP
FRYL	285527	hgsc.bcm.edu	hg19	4	48512966	48512966	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	FRYL	NM_015030	exon58	c.G8181A	p.E2727E	GACTGCCTCATTA	.	295.0	103.0	295.0	0.0	.	242	.	.	Atlas-SNP
AMBN	258	hgsc.bcm.edu	hg19	4	71467187	71467187	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	AMBN	NM_016519	exon6	c.T347C	p.L116S	CATCCTTGAAGCC	.	111.0	38.0	106.0	0.0	.	73	.	.	Atlas-SNP
LIN54	132660	hgsc.bcm.edu	hg19	4	83891563	83891563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	LIN54	NM_194282	exon4	c.A868G	p.S290G	CACCACTTTCAGA	.	128.0	53.0	106.0	0.0	.	50	.	.	Atlas-SNP
PITX2	5308	hgsc.bcm.edu	hg19	4	111539720	111539720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	PITX2	NM_000325	exon3	c.C536A	p.P179Q	TAGCCTGGGTACA	.	113.0	41.0	120.0	0.0	.	73	.	.	Atlas-SNP
CCRN4L	25819	hgsc.bcm.edu	hg19	4	139965969	139965969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	CCRN4L	NM_012118	exon3	c.C637A	p.Q213K	GGCTATCAAGGCA	.	166.0	64.0	160.0	0.0	.	22	.	.	Atlas-SNP
GALNTL6	442117	hgsc.bcm.edu	hg19	4	173730589	173730589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	GALNTL6	NM_001034845	exon6	c.G631A	p.G211R	AGAGAAGGACTCA	.	142.0	9.0	140.0	0.0	.	102	.	.	Atlas-SNP
SORBS2	8470	hgsc.bcm.edu	hg19	4	186544895	186544895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	SORBS2	NM_001270771	exon16	c.A1976G	p.N659S	CTTTGATTTTCTT	.	189.0	76.0	166.0	0.0	.	300	.	.	Atlas-SNP
PRDM9	56979	hgsc.bcm.edu	hg19	5	23527459	23527459	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	PRDM9	NM_020227	exon11	c.G2262A	p.G754G	GTGTGGGCGGGGC	.	185.0	19.0	273.0	0.0	.	344	.	.	Atlas-SNP
NUP155	9631	hgsc.bcm.edu	hg19	5	37302983	37302983	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	NUP155	NM_153485	exon29	c.A3345G	p.L1115L	GTACTCTAGTCGC	.	59.0	26.0	53.0	0.0	.	116	.	.	Atlas-SNP
SLC30A5	64924	hgsc.bcm.edu	hg19	5	68411780	68411780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	SLC30A5	NM_022902	exon9	c.A811G	p.I271V	TCTCTCATTATGC	.	109.0	34.0	120.0	0.0	.	54	.	.	Atlas-SNP
NUDT12	83594	hgsc.bcm.edu	hg19	5	102887925	102887925	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	NUDT12	NM_031438	exon6	c.G1271C	p.R424T	TGTTCTCTAGTGA	.	124.0	25.0	94.0	0.0	.	27	.	.	Atlas-SNP
KCNN2	3781	hgsc.bcm.edu	hg19	5	113698857	113698857	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	KCNN2	NM_021614	exon1	c.G385T	p.E129X	CTGTTCGAAAAGC	.	115.0	29.0	76.0	0.0	.	144	.	.	Atlas-SNP
FTMT	94033	hgsc.bcm.edu	hg19	5	121187759	121187759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	FTMT	NM_177478	exon1	c.C101A	p.P34Q	GGGCCCCGGGGCG	.	56.0	19.0	22.0	0.0	.	71	.	.	Atlas-SNP
TCF7	6932	hgsc.bcm.edu	hg19	5	133481891	133481891	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	TCF7	NM_201634	exon10	c.804-1G>A	.	TTTACAGATAACT	.	143.0	34.0	93.0	0.0	.	81	.	.	Atlas-SNP
RBM27	54439	hgsc.bcm.edu	hg19	5	145640456	145640456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	RBM27	NM_018989	exon12	c.A1888G	p.I630V	GTTAATATCCAGG	.	432.0	23.0	292.0	0.0	.	119	.	.	Atlas-SNP
GRM6	2916	hgsc.bcm.edu	hg19	5	178418902	178418902	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	GRM6	NM_000843	exon2	c.G687A	p.G229G	CTCAACCCCACTT	.	135.0	18.0	120.0	0.0	.	149	.	.	Atlas-SNP
C5orf60	285679	hgsc.bcm.edu	hg19	5	179069928	179069928	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	C5orf60	NM_001142306	exon4	c.C625G	p.H209D	GCTGGTGTGAAGG	.	253.0	56.0	209.0	0.0	.	24	.	.	Atlas-SNP
PRPF4B	8899	hgsc.bcm.edu	hg19	6	4032939	4032939	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	PRPF4B	NM_003913	exon2	c.C1188T	p.S396S	CCGATCCTTAGAA	.	236.0	30.0	153.0	0.0	.	140	.	.	Atlas-SNP
GFOD1	54438	hgsc.bcm.edu	hg19	6	13365293	13365293	+	Silent	SNP	C	C	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	GFOD1	NM_018988	exon2	c.G855C	p.V285V	GTTGCTCACCGGC	.	89.0	32.0	58.0	0.0	.	38	.	.	Atlas-SNP
FAM8A1	51439	hgsc.bcm.edu	hg19	6	17601130	17601130	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	FAM8A1	NM_016255	exon1	c.C490G	p.P164A	GCGGCGCCGCCGC	.	123.0	9.0	83.0	0.0	.	26	.	.	Atlas-SNP
GOPC	57120	hgsc.bcm.edu	hg19	6	117890868	117890868	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	GOPC,NS,carcinoma,0,1	GOPC	NM_020399	exon7	c.T944G	p.I315S	TCAGAGATGAGGA	.	154.0	12.0	141.0	0.0	.	29	.	.	Atlas-SNP
EPB41L2	2037	hgsc.bcm.edu	hg19	6	131216151	131216151	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	EPB41L2	NM_001135554	exon9	c.T1345G	p.S449A	TATAGGAAATTTT	.	106.0	21.0	116.0	0.0	.	96	.	.	Atlas-SNP
KDELR2	11014	hgsc.bcm.edu	hg19	7	6505873	6505873	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	KDELR2	NM_006854	exon4	c.G433T	p.E145X	TGGTCTCGGCCTC	.	76.0	22.0	88.0	0.0	.	31	.	.	Atlas-SNP
TWIST1	7291	hgsc.bcm.edu	hg19	7	19156374	19156374	+	Missense_Mutation	SNP	T	T	C	rs200369729	alternate_allele	TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	TWIST1	NM_000474	exon1	c.A571G	p.R191G	CCATCCTCCAGAC	.	200.0	79.0	204.0	0.0	.	18	.	T|0.998;G|0.002	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48314641	48314641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	ABCA13	NM_152701	exon17	c.T5378C	p.I1793T	TCGCAATTGTGAT	.	121.0	45.0	121.0	0.0	.	1192	.	.	Atlas-SNP
POM121	9883	hgsc.bcm.edu	hg19	7	72413572	72413572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	POM121	NM_172020	exon11	c.A2245G	p.M749V	CCGTCCATGATCA	.	333.0	55.0	217.0	0.0	.	131	.	.	Atlas-SNP
HSPB1	3315	hgsc.bcm.edu	hg19	7	75932030	75932030	+	Missense_Mutation	SNP	A	A	G	rs200190722	bycluster;alternate_allele	TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	HSPB1	NM_001540	exon1	c.A1G	p.M1V	GCCAGCATGACCG	.	147.0	39.0	101.0	0.0	.	6	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82538312	82538312	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	PCLO	NM_014510	exon8	c.G13318T	p.E4440X	TTTCCTCACGACG	.	94.0	29.0	75.0	0.0	.	1506	.	.	Atlas-SNP
COL1A2	1278	hgsc.bcm.edu	hg19	7	94057146	94057146	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	COL1A2	NM_000089	exon49	c.C3475G	p.P1159A	AAGAACCCAGCTC	.	83.0	20.0	58.0	0.0	.	240	.	.	Atlas-SNP
GRM8	2918	hgsc.bcm.edu	hg19	7	126173564	126173564	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	GRM8	NM_000845	exon8	c.G1872T	p.V624V	TAGGAGCACGTAA	.	184.0	59.0	143.0	0.0	.	377	.	.	Atlas-SNP
MGAM	8972	hgsc.bcm.edu	hg19	7	141735987	141735987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	MGAM	NM_004668	exon17	c.G1978T	p.G660C	ATATGTGGCTTTG	.	161.0	36.0	121.0	0.0	.	767	.	.	Atlas-SNP
MGAM	8972	hgsc.bcm.edu	hg19	7	141735988	141735988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	MGAM	NM_004668	exon17	c.G1979T	p.G660V	TATGTGGCTTTGC	.	165.0	38.0	121.0	0.0	.	767	.	.	Atlas-SNP
RP1	6101	hgsc.bcm.edu	hg19	8	55539282	55539282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	RP1	NM_006269	exon4	c.G2840T	p.C947F	TAAATTGTAGCAA	.	195.0	11.0	233.0	0.0	.	429	.	.	Atlas-SNP
OXR1	55074	hgsc.bcm.edu	hg19	8	107705036	107705036	+	Silent	SNP	T	T	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	OXR1	NM_001198532	exon6	c.T609G	p.T203T	TTCAACTTCTGAG	.	105.0	42.0	91.0	0.0	.	190	.	.	Atlas-SNP
EIF3E	3646	hgsc.bcm.edu	hg19	8	109226846	109226846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	EIF3E	NM_001568	exon10	c.A1051G	p.I351V	TGCTGATACACTG	.	244.0	13.0	250.0	0.0	.	73	.	.	Atlas-SNP
COL14A1	7373	hgsc.bcm.edu	hg19	8	121296007	121296007	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	COL14A1	NM_021110	exon32	c.T3957A	p.V1319V	TGGGGTTATTTTA	.	101.0	45.0	91.0	0.0	.	292	.	.	Atlas-SNP
MTBP	27085	hgsc.bcm.edu	hg19	8	121468896	121468896	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	MTBP	NM_022045	exon7	c.A733T	p.I245L	ATACAGATATGGG	.	56.0	17.0	54.0	0.0	.	77	.	.	Atlas-SNP
ANXA13	312	hgsc.bcm.edu	hg19	8	124696885	124696885	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	ANXA13	NM_001003954	exon11	c.G919T	p.E307X	ACGTCTCCTCATC	.	124.0	41.0	116.0	0.0	.	38	.	.	Atlas-SNP
ANXA13	312	hgsc.bcm.edu	hg19	8	124696886	124696886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	ANXA13	NM_001003954	exon11	c.G918T	p.E306D	CGTCTCCTCATCG	.	126.0	41.0	116.0	0.0	.	38	.	.	Atlas-SNP
LYNX1	66004	hgsc.bcm.edu	hg19	8	143857324	143857324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	LYNX1	NM_177477	exon2	c.G52A	p.A18T	TCTTACCCAGAGG	.	67.0	22.0	45.0	0.0	.	40	.	.	Atlas-SNP
ACO1	48	hgsc.bcm.edu	hg19	9	32424547	32424547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	ACO1	NM_002197	exon10	c.G1072A	p.V358I	CAACAGGTTGTGG	.	95.0	6.0	115.0	0.0	.	149	.	.	Atlas-SNP
GNAQ	2776	hgsc.bcm.edu	hg19	9	80537112	80537112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	GNAQ,NS,carcinoma,0,2	GNAQ	NM_002072	exon2	c.A286T	p.T96S	TGAGTGTGTCCAT	.	53.0	4.0	46.0	1.0	.	384	.	.	Atlas-SNP
MUSK	4593	hgsc.bcm.edu	hg19	9	113550073	113550073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	MUSK	NM_005592	exon13	c.G1882A	p.A628T	GAGGCAGCCCTCA	.	80.0	26.0	90.0	0.0	.	112	.	.	Atlas-SNP
RGS3	5998	hgsc.bcm.edu	hg19	9	116247941	116247941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	RGS3	NM_144488	exon8	c.G657T	p.L219F	TCTCTTGGTTACT	.	81.0	30.0	89.0	0.0	.	251	.	.	Atlas-SNP
CDK5RAP2	55755	hgsc.bcm.edu	hg19	9	123298694	123298694	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	CDK5RAP2	NM_018249	exon7	c.C618T	p.H206H	CCCCTCGTGCATC	.	60.0	24.0	58.0	0.0	.	157	.	.	Atlas-SNP
SLC29A3	55315	hgsc.bcm.edu	hg19	10	73111483	73111483	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	SLC29A3	NM_018344	exon4	c.G548C	p.S183T	TCTTCAGCAGCAG	.	59.0	18.0	67.0	0.0	.	51	.	.	Atlas-SNP
DNAJB12	54788	hgsc.bcm.edu	hg19	10	74114738	74114738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	DNAJB12	NM_017626	exon1	c.G20A	p.R7Q	GGCAGCCGGGCGC	.	55.0	33.0	44.0	0.0	.	22	.	.	Atlas-SNP
PPP3CB	5532	hgsc.bcm.edu	hg19	10	75238300	75238300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	PPP3CB	NM_001142354	exon3	c.T368C	p.L123P	AGAAAAAGGTATC	.	82.0	4.0	60.0	0.0	.	68	.	.	Atlas-SNP
CH25H	9023	hgsc.bcm.edu	hg19	10	90966684	90966684	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	CH25H	NM_003956	exon1	c.C366A	p.L122L	CAGCAGGAGCAGC	.	123.0	36.0	109.0	0.0	.	19	.	.	Atlas-SNP
DNMBP	23268	hgsc.bcm.edu	hg19	10	101715378	101715378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	DNMBP	NM_015221	exon4	c.C1853T	p.P618L	GATACCGGAGTAC	.	73.0	5.0	65.0	0.0	.	173	.	.	Atlas-SNP
SFXN2	118980	hgsc.bcm.edu	hg19	10	104489078	104489078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	SFXN2	NM_178858	exon5	c.A434G	p.Q145R	CCAGGCAGATGGC	.	74.0	31.0	45.0	0.0	.	40	.	.	Atlas-SNP
ATRNL1	26033	hgsc.bcm.edu	hg19	10	117061424	117061424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	ATRNL1	NM_207303	exon17	c.T2689C	p.S897P	TCATGTTCCAACT	.	95.0	40.0	85.0	0.0	.	219	.	.	Atlas-SNP
OR52R1	119695	hgsc.bcm.edu	hg19	11	4824778	4824778	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	OR52R1	NM_001005177	exon1	c.T833A	p.L278Q	GCAAACAGGATGT	.	145.0	51.0	165.0	0.0	.	81	.	.	Atlas-SNP
OR52N4	390072	hgsc.bcm.edu	hg19	11	5776539	5776539	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	OR52N4	NM_001005175	exon1	c.C569A	p.S190Y	AATTGTCCTGTGG	.	74.0	5.0	69.0	0.0	.	55	.	.	Atlas-SNP
OR52N4	390072	hgsc.bcm.edu	hg19	11	5776540	5776540	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	OR52N4	NM_001005175	exon1	c.C570T	p.S190S	ATTGTCCTGTGGT	.	73.0	5.0	69.0	0.0	.	55	.	.	Atlas-SNP
PAMR1	25891	hgsc.bcm.edu	hg19	11	35454063	35454063	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	PAMR1,NS,carcinoma,0,1	PAMR1	NM_015430	exon12	c.C2055A	p.I685I	AGCCGCGATGCCT	.	70.0	3.0	70.0	0.0	.	85	.	.	Atlas-SNP
CKAP5	9793	hgsc.bcm.edu	hg19	11	46771955	46771955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	CKAP5	NM_001008938	exon42	c.A5573G	p.K1858R	TATTTCTTCTTAT	.	92.0	6.0	106.0	0.0	.	134	.	.	Atlas-SNP
OR6Q1	219952	hgsc.bcm.edu	hg19	11	57798664	57798664	+	Silent	SNP	G	G	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	OR6Q1	NM_001005186	exon1	c.G240C	p.V80V	TACAGTGCCCAAG	.	181.0	18.0	172.0	0.0	.	58	.	.	Atlas-SNP
OR9I1	219954	hgsc.bcm.edu	hg19	11	57886498	57886498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	OR9I1	NM_001005211	exon1	c.T419C	p.L140P	CAGCAGAGCCTGG	.	71.0	7.0	80.0	0.0	.	53	.	.	Atlas-SNP
ZFP91	80829	hgsc.bcm.edu	hg19	11	58381796	58381796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	ZFP91	NM_053023	exon9	c.G1082T	p.R361L	TTCTGCGACATGC	.	57.0	21.0	51.0	0.0	.	66	.	.	Atlas-SNP
STIP1	10963	hgsc.bcm.edu	hg19	11	63963275	63963275	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	STIP1	NM_006819	exon5	c.A662G	p.N221S	CAGAGAATAAGAA	.	260.0	109.0	239.0	0.0	.	63	.	.	Atlas-SNP
CBL	867	hgsc.bcm.edu	hg19	11	119170325	119170325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	CBL	NM_005188	exon16	c.C2555T	p.T852I	CTGCCACCGCCTC	.	88.0	5.0	92.0	0.0	.	408	.	.	Atlas-SNP
ATF7IP	55729	hgsc.bcm.edu	hg19	12	14577886	14577886	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	ATF7IP	NM_018179	exon2	c.A1037C	p.D346A	ATATTGATGCTAA	.	90.0	34.0	122.0	0.0	.	136	.	.	Atlas-SNP
SLCO1C1	53919	hgsc.bcm.edu	hg19	12	20852565	20852565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	SLCO1C1	NM_017435	exon2	c.C55A	p.P19T	GTGCAACCTGTTG	.	254.0	94.0	286.0	0.0	.	216	.	.	Atlas-SNP
SLC38A2	54407	hgsc.bcm.edu	hg19	12	46758276	46758276	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	SLC38A2	NM_018976	exon10	c.A769G	p.I257V	TGTTTATTGTTTC	.	126.0	33.0	157.0	0.0	.	36	.	.	Atlas-SNP
TFCP2	7024	hgsc.bcm.edu	hg19	12	51510198	51510198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	TFCP2	NM_001173452	exon4	c.A357G	p.I119M	ACGGAATATACTC	.	74.0	37.0	96.0	0.0	.	49	.	.	Atlas-SNP
SLC26A10	65012	hgsc.bcm.edu	hg19	12	58018905	58018905	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	SLC26A10	NM_133489	exon11	c.1345-1G>A	.	CTTATAGGAGACT	.	169.0	66.0	138.0	0.0	.	89	.	.	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	hg19	12	78522622	78522622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	NAV3	NM_014903	exon18	c.G4417A	p.G1473R	GCAGCTGGAAAAT	.	87.0	35.0	93.0	0.0	.	506	.	.	Atlas-SNP
METTL25	84190	hgsc.bcm.edu	hg19	12	82792710	82792710	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	.	NM_032230	exon4	c.A668G	p.H223R	AGAAACATTGGAA	.	97.0	44.0	102.0	0.0	.	.	.	.	Atlas-SNP
NAA25	80018	hgsc.bcm.edu	hg19	12	112516482	112516482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	NAA25	NM_024953	exon6	c.G541A	p.V181I	TTTCGACCATTCT	.	128.0	28.0	129.0	0.0	.	105	.	.	Atlas-SNP
GCN1L1	10985	hgsc.bcm.edu	hg19	12	120595713	120595713	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	GCN1L1	NM_006836	exon26	c.C3027A	p.I1009I	AGTGAGGATCTGA	.	113.0	39.0	98.0	0.0	.	207	.	.	Atlas-SNP
AKAP11	11215	hgsc.bcm.edu	hg19	13	42874405	42874405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	AKAP11	NM_016248	exon8	c.A1523G	p.H508R	CCCACCATACTAA	.	219.0	13.0	220.0	0.0	.	146	.	.	Atlas-SNP
TRIM13	10206	hgsc.bcm.edu	hg19	13	50586458	50586458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	TRIM13	NM_001007278	exon4	c.T391C	p.F131L	CATGTCTTCTGTT	.	174.0	10.0	126.0	0.0	.	30	.	.	Atlas-SNP
OR4N5	390437	hgsc.bcm.edu	hg19	14	20612471	20612471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	OR4N5	NM_001004724	exon1	c.T577C	p.F193L	AATACCTTTGTGG	.	72.0	20.0	67.0	0.0	.	72	.	.	Atlas-SNP
OR11H4	390442	hgsc.bcm.edu	hg19	14	20711205	20711205	+	Silent	SNP	C	C	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	OR11H4,rectum,carcinoma,0,3	OR11H4	NM_001004479	exon1	c.C255G	p.S85S	TGTGTCCTCCACT	.	145.0	12.0	137.0	0.0	.	63	.	.	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	hg19	14	45658480	45658480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	FANCM	NM_020937	exon20	c.A5255G	p.N1752S	CTCAGAATCATAA	.	300.0	107.0	350.0	0.0	.	225	.	.	Atlas-SNP
SIX6	4990	hgsc.bcm.edu	hg19	14	60976599	60976599	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	SIX6,NS,carcinoma,0,1	SIX6	NM_007374	exon1	c.C483A	p.L161L	TGAGCTCGCCCAG	.	270.0	96.0	235.0	0.0	.	27	.	.	Atlas-SNP
MLH3	27030	hgsc.bcm.edu	hg19	14	75500136	75500136	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	MLH3	NM_001040108	exon7	c.A3701T	p.E1234V	AGCTGCTCCAGAC	.	60.0	14.0	59.0	0.0	.	200	.	.	Atlas-SNP
SLIRP	81892	hgsc.bcm.edu	hg19	14	78174474	78174474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	SLIRP,NS,carcinoma,0,1	SLIRP	NM_001267864	exon1	c.G20A	p.R7K	CAGCGAGAGGTGC	.	93.0	43.0	89.0	0.0	.	6	.	.	Atlas-SNP
CEP170B	283638	hgsc.bcm.edu	hg19	14	105350819	105350819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	.	NM_001112726	exon9	c.G1703A	p.G568E	ACGCAGGGACATA	.	174.0	78.0	179.0	0.0	.	.	.	.	Atlas-SNP
GPR176	11245	hgsc.bcm.edu	hg19	15	40093462	40093462	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	GPR176	NM_007223	exon3	c.G1419A	p.K473K	CAGCCGCTTCTTG	.	116.0	8.0	82.0	0.0	.	41	.	.	Atlas-SNP
CHST14	113189	hgsc.bcm.edu	hg19	15	40763663	40763663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	CHST14	NM_130468	exon1	c.G251A	p.R84H	CCTGGCGCGGGAA	.	773.0	258.0	563.0	0.0	.	19	.	.	Atlas-SNP
CHST14	113189	hgsc.bcm.edu	hg19	15	40763664	40763664	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	CHST14	NM_130468	exon1	c.C252A	p.R84R	CTGGCGCGGGAAA	.	760.0	254.0	561.0	0.0	.	19	.	.	Atlas-SNP
SEMA6D	80031	hgsc.bcm.edu	hg19	15	48063146	48063146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	SEMA6D	NM_153618	exon19	c.C2386T	p.H796Y	AAGGCCCATGGCC	.	175.0	11.0	142.0	0.0	.	322	.	.	Atlas-SNP
C16orf11	146325	hgsc.bcm.edu	hg19	16	613776	613776	+	Nonsense_Mutation	SNP	C	C	A	rs368085414	alternate_allele	TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	C16orf11	NM_145270	exon2	c.C482A	p.S161X	CTGAGTCGTGGAA	.	64.0	5.0	67.0	0.0	.	27	.	.	Atlas-SNP
CLEC16A	23274	hgsc.bcm.edu	hg19	16	11217616	11217616	+	Silent	SNP	C	C	T	rs200993240		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	CLEC16A	NM_015226	exon20	c.C2286T	p.G762G	GACTGGCGTGGAG	.	70.0	12.0	49.0	0.0	.	101	.	.	Atlas-SNP
TBX6	6911	hgsc.bcm.edu	hg19	16	30097548	30097548	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	TBX6	NM_004608	exon9	c.T1309G	p.X437G	TGGTTCAGTACAT	.	169.0	37.0	139.0	0.0	.	29	.	.	Atlas-SNP
P2RX1	5023	hgsc.bcm.edu	hg19	17	3806860	3806860	+	Missense_Mutation	SNP	C	C	A	rs367615874	alternate_allele	TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	P2RX1	NM_002558	exon6	c.G590T	p.R197L	TTGAAGCGTGGAA	.	24.0	15.0	29.0	0.0	.	38	.	.	Atlas-SNP
SMCR8	140775	hgsc.bcm.edu	hg19	17	18220404	18220404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	SMCR8	NM_144775	exon1	c.G1301A	p.G434E	AACTGGGAGATGA	.	85.0	12.0	131.0	0.0	.	62	.	.	Atlas-SNP
SUZ12	23512	hgsc.bcm.edu	hg19	17	30320261	30320261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	SUZ12	NM_015355	exon11	c.C1202T	p.A401V	TTTCAGCTGTTAA	.	457.0	27.0	633.0	0.0	.	61	.	.	Atlas-SNP
LUC7L3	51747	hgsc.bcm.edu	hg19	17	48817694	48817694	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	LUC7L3	NM_006107	exon3	c.A194T	p.N65I	ATGAAAATCTACG	.	119.0	65.0	94.0	0.0	.	32	.	.	Atlas-SNP
VEZF1	7716	hgsc.bcm.edu	hg19	17	56060489	56060489	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	VEZF1	NM_007146	exon2	c.A299C	p.K100T	ACCAACTTGATCC	.	97.0	27.0	80.0	0.0	.	50	.	.	Atlas-SNP
RPTOR	57521	hgsc.bcm.edu	hg19	17	78704430	78704430	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	RPTOR,caecum,carcinoma,0,1	RPTOR	NM_001163034	exon5	c.T578C	p.V193A	TCTTCGTCTACGA	.	83.0	27.0	66.0	0.0	.	122	.	.	Atlas-SNP
FSCN2	25794	hgsc.bcm.edu	hg19	17	79495626	79495626	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	FSCN2	NM_001077182	exon1	c.C69T	p.Y23Y	CCGCTACCTGACA	.	211.0	59.0	143.0	0.0	.	35	.	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80038048	80038048	+	Missense_Mutation	SNP	C	C	G	rs147197890	alternate_allele	TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	FASN	NM_004104	exon41	c.G7114C	p.V2372L	GCTGCACGAAGAA	.	103.0	49.0	79.0	0.0	.	154	.	C|1.000;T|0.000	Atlas-SNP
DSC1	1823	hgsc.bcm.edu	hg19	18	28719849	28719849	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	DSC1	NM_004948	exon11	c.C1525T	p.Q509X	ACTTCTGATACCT	.	110.0	44.0	119.0	0.0	.	240	.	.	Atlas-SNP
DSG3	1830	hgsc.bcm.edu	hg19	18	29052251	29052251	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	DSG3	NM_001944	exon13	c.C1902T	p.A634A	AGTGGCCCCCCTT	.	96.0	27.0	104.0	0.0	.	172	.	.	Atlas-SNP
NFATC1	4772	hgsc.bcm.edu	hg19	18	77208981	77208981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	NFATC1	NM_006162	exon4	c.C1586A	p.A529D	TGCGAGCCGTGTA	.	86.0	42.0	95.0	0.0	.	105	.	.	Atlas-SNP
RANBP3	8498	hgsc.bcm.edu	hg19	19	5925741	5925741	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	RANBP3	NM_007322	exon10	c.A821T	p.N274I	CTCTCATTTATCA	.	25.0	8.0	33.0	0.0	.	36	.	.	Atlas-SNP
TRIP10	9322	hgsc.bcm.edu	hg19	19	6743800	6743800	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	TRIP10_ENST00000313244,NS,carcinoma,0,2	TRIP10	NM_004240	exon7	c.C595T	p.R199X	TTCAACCGAGACC	.	118.0	35.0	130.0	1.0	.	104	.	.	Atlas-SNP
COL5A3	50509	hgsc.bcm.edu	hg19	19	10092740	10092740	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	COL5A3	NM_015719	exon33	c.2460+1G>A	.	GACTCACCGACTT	.	119.0	47.0	101.0	0.0	.	243	.	.	Atlas-SNP
CYP4F3	4051	hgsc.bcm.edu	hg19	19	15758109	15758109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	CYP4F3	NM_001199209	exon5	c.T500C	p.F167S	AGATTTTCAATGA	.	118.0	8.0	111.0	0.0	.	69	.	.	Atlas-SNP
ATP13A1	57130	hgsc.bcm.edu	hg19	19	19756765	19756765	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	ATP13A1	NM_020410	exon24	c.A3278C	p.E1093A	TCAAACTCCTTGT	.	28.0	7.0	28.0	0.0	.	82	.	.	Atlas-SNP
TSHZ3	57616	hgsc.bcm.edu	hg19	19	31769256	31769256	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	TSHZ3	NM_020856	exon2	c.T1443C	p.T481T	CTCGTCAGTGACC	.	70.0	23.0	61.0	0.0	.	549	.	.	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	hg19	19	36216399	36216399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	MLL4	NM_014727	exon12	c.G3662T	p.C1221F	AAGTCTGCTGTGA	.	25.0	11.0	32.0	0.0	.	229	.	.	Atlas-SNP
ZC3H4	23211	hgsc.bcm.edu	hg19	19	47587632	47587632	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	ZC3H4	NM_015168	exon9	c.C1188A	p.C396X	GTACTTGCAAATG	.	94.0	4.0	62.0	0.0	.	96	.	.	Atlas-SNP
SIGLEC6	946	hgsc.bcm.edu	hg19	19	52031019	52031019	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	SIGLEC6	NM_001245	exon7	c.C1170A	p.V390V	GACCATGACGGGG	.	64.0	8.0	72.0	0.0	.	142	.	.	Atlas-SNP
PRKCG	5582	hgsc.bcm.edu	hg19	19	54395040	54395040	+	Silent	SNP	G	G	T	rs77550964	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	PRKCG	NM_002739	exon6	c.G642T	p.T214T	CCGAACGGTGAAA	.	179.0	70.0	131.0	0.0	.	246	.	G|0.999;A|0.001	Atlas-SNP
ZSCAN22	342945	hgsc.bcm.edu	hg19	19	58850111	58850111	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	ZSCAN22	NM_181846	exon3	c.A895T	p.S299C	GCCTGCAGCGAGT	.	94.0	37.0	94.0	0.0	.	47	.	.	Atlas-SNP
CST9L	128821	hgsc.bcm.edu	hg19	20	23549024	23549024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	CST9L	NM_080610	exon1	c.C64A	p.Q22K	GGATCTGGGAGCC	.	101.0	40.0	83.0	0.0	.	25	.	.	Atlas-SNP
ZNF831	128611	hgsc.bcm.edu	hg19	20	57829044	57829044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	ZNF831	NM_178457	exon5	c.T4280C	p.L1427P	CCTGCCTGGCAGT	.	78.0	24.0	111.0	0.0	.	287	.	.	Atlas-SNP
TMPRSS15	5651	hgsc.bcm.edu	hg19	21	19726182	19726182	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	TMPRSS15	NM_002772	exon10	c.881-2A>T	.	AGAAGCTACAAAA	.	304.0	22.0	311.0	0.0	.	189	.	.	Atlas-SNP
TMPRSS3	64699	hgsc.bcm.edu	hg19	21	43802299	43802299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	TMPRSS3	NM_001256317	exon9	c.C827T	p.S276F	AACAGGGAAACTA	.	90.0	27.0	95.0	0.0	.	40	.	.	Atlas-SNP
C22orf42	150297	hgsc.bcm.edu	hg19	22	32546378	32546378	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	C22orf42	NM_001010859	exon7	c.T582C	p.L194L	GTCTTCAAGAGAG	.	450.0	172.0	437.0	1.0	.	37	.	.	Atlas-SNP
L3MBTL2	83746	hgsc.bcm.edu	hg19	22	41616753	41616753	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	L3MBTL2	NM_031488	exon7	c.T734A	p.L245H	TGCTGCTTCGGTA	.	59.0	26.0	54.0	0.0	.	61	.	.	Atlas-SNP
SULT4A1	25830	hgsc.bcm.edu	hg19	22	44237809	44237809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	SULT4A1	NM_014351	exon2	c.C173T	p.T58I	AAGCTGGTGCCTG	.	47.0	17.0	35.0	0.0	.	26	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	32827649	32827649	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	DMD	NM_004006	exon7	c.A610T	p.R204X	GATATCTGGCGAT	.	63.0	38.0	56.0	0.0	.	2127	.	.	Atlas-SNP
AMER1	139285	hgsc.bcm.edu	hg19	X	63412647	63412647	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	.	NM_152424	exon2	c.A520G	p.S174G	TACTGCTAAAAAA	.	44.0	32.0	48.0	0.0	.	.	.	.	Atlas-SNP
ATP7A	538	hgsc.bcm.edu	hg19	X	77258571	77258571	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	ATP7A	NM_000052	exon6	c.A1545T	p.G515G	CTTAGGAATATAT	.	82.0	70.0	82.0	0.0	.	248	.	.	Atlas-SNP
IGSF1	3547	hgsc.bcm.edu	hg19	X	130420012	130420012	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	IGSF1	NM_001555	exon4	c.T108C	p.P36P	TGGTTGAGGGTCC	.	49.0	30.0	65.0	0.0	.	231	.	.	Atlas-SNP
SLITRK4	139065	hgsc.bcm.edu	hg19	X	142716502	142716502	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	SLITRK4	NM_001184750	exon2	c.A2423T	p.K808M	TCACTCTTCCTTT	.	72.0	8.0	67.0	0.0	.	162	.	.	Atlas-SNP
SLITRK4	139065	hgsc.bcm.edu	hg19	X	142716504	142716504	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	SLITRK4	NM_001184750	exon2	c.G2421C	p.R807S	ACTCTTCCTTTGT	.	71.0	8.0	64.0	0.0	.	162	.	.	Atlas-SNP
MAGEA1	4100	hgsc.bcm.edu	hg19	X	152482572	152482572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	MAGEA1	NM_004988	exon3	c.G439T	p.A147S	CAGAGGCTTTGCC	.	131.0	8.0	116.0	0.0	.	57	.	.	Atlas-SNP
ND3	0	hgsc.bcm.edu	hg19	MT	10251	10251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	.	ENST00000361227	exon1	c.T193C	p.F65L	TTATTATTTGATC	.	38.0	17.0	19.0	0.0	.	.	.	.	Atlas-SNP
MIER1	57708	hgsc.bcm.edu	hg19	1	67450363	67450364	+	In_Frame_Ins	INS	-	-	GAT	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	MIER1	NM_001077700	exon14	c.1478_1479insGAT	p.D493delinsEI	.	.	184.0	64.0	193.0	0.0	.	86	.	.	Atlas-INDEL
EFCAB7	84455	hgsc.bcm.edu	hg19	1	64021164	64021165	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	EFCAB7	NM_032437	exon9	c.1192_1193insTA	p.L398fs	.	.	231.0	93.0	213.0	0.0	.	45	.	.	Atlas-INDEL
ALB	213	hgsc.bcm.edu	hg19	4	74282058	74282071	+	Frame_Shift_Del	DEL	AATTCCAGAATGCG	AATTCCAGAATGCG	-	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	AATTCCAGAATGCG	AATTCCAGAATGCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	ALB	NM_000477	exon10	c.1276_1289del	p.426_430del	.	.	178.0	56.0	231.0	0.0	.	132	.	.	Atlas-INDEL
C19orf80	55908	hgsc.bcm.edu	hg19	19	11350417	11350428	+	In_Frame_Del	DEL	TGACCCTGCTCT	TGACCCTGCTCT	-	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	TGACCCTGCTCT	TGACCCTGCTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	C19orf80	NM_018687	exon1	c.103_114del	p.35_38del	.	.	115.0	32.0	103.0	0.0	.	8	.	.	Atlas-INDEL
DAPK1	1612	hgsc.bcm.edu	hg19	9	90219888	90219888	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	DAPK1	NM_004938	exon3	c.81delG	p.V27fs	.	.	89.0	36.0	120.0	0.0	.	329	.	.	Atlas-INDEL
IFIT5	24138	hgsc.bcm.edu	hg19	10	91177145	91177145	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	IFIT5	NM_012420	exon2	c.188delT	p.L63fs	.	.	160.0	51.0	167.0	0.0	.	32	.	.	Atlas-INDEL
LAG3	3902	hgsc.bcm.edu	hg19	12	6887494	6887511	+	In_Frame_Del	DEL	CCGGAGCCGGAGCCGGAG	CCGGAGCCGGAGCCGGAG	-	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	CCGGAGCCGGAGCCGGAG	CCGGAGCCGGAGCCGGAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	LAG3	NM_002286	exon8	c.1515_1532del	p.505_511del	.	.	56.0	22.0	67.0	0.0	.	35	.	.	Atlas-INDEL
CDC5L	988	hgsc.bcm.edu	hg19	6	44414400	44414400	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	CDC5L,NS,carcinoma,0,1	CDC5L	NM_001253	exon16	c.2360delG	p.R787fs	.	.	108.0	27.0	62.0	0.0	.	86	.	.	Atlas-INDEL
CCT8L2	150160	hgsc.bcm.edu	hg19	22	17073436	17073439	+	Frame_Shift_Del	DEL	TCCA	TCCA	-	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	TCCA	TCCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	CCT8L2	NM_014406	exon1	c.3_6del	p.1_2del	.	.	65.0	27.0	74.0	0.0	.	150	.	.	Atlas-INDEL
DSPP	1834	hgsc.bcm.edu	hg19	4	88537080	88537088	+	In_Frame_Del	DEL	ACAGCAGCA	ACAGCAGCA	-	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	ACAGCAGCA	ACAGCAGCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	DSPP	NM_014208	exon5	c.3265_3273del	p.1089_1091del	.	.	256.0	51.0	233.0	0.0	.	174	.	.	Atlas-INDEL
NAA38	51691	hgsc.bcm.edu	hg19	7	117832038	117832043	+	In_Frame_Del	DEL	AAATTC	AAATTC	-	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	AAATTC	AAATTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	NAA38	NM_016200	exon4	c.272_277del	p.91_93del	.	.	149.0	34.0	132.0	0.0	.	16	.	.	Atlas-INDEL
MIER1	57708	hgsc.bcm.edu	hg19	1	67450362	67450363	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	MIER1	NM_001077700	exon14	c.1477_1478insC	p.D493fs	.	.	186.0	65.0	195.0	0.0	.	86	.	.	Atlas-INDEL
CDKN2A	1029	hgsc.bcm.edu	hg19	9	21974751	21974760	+	Frame_Shift_Del	DEL	CTACCCGACC	CTACCCGACC	-	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	CTACCCGACC	CTACCCGACC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	CDKN2A	NM_058197	exon1	c.68_77del	p.23_26del	.	.	83.0	26.0	79.0	0.0	.	4810	.	.	Atlas-INDEL
GPRIN1	114787	hgsc.bcm.edu	hg19	5	176026192	176026192	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AADG-01A-11D-A40R-10	TCGA-DD-AADG-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bc83c53e-cd19-48a9-ae9c-a59c69b55438	54f60e9c-e44d-435e-8f76-5525282b610b	.	GPRIN1	NM_052899	exon2	c.645delA	p.G215fs	.	.	103.0	22.0	56.0	0.0	.	77	.	.	Atlas-INDEL
