Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ADAM30	11085	hgsc.bcm.edu	hg19	1	120438417	120438417	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	ADAM30	NM_021794	exon1	c.G543C	p.W181C	CATCTGCCATTCT	.	90.0	4.0	54.0	0.0	.	88	.	.	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	hg19	1	152328831	152328831	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	FLG2	NM_001014342	exon3	c.T1431C	p.S477S	AAAGCCAGATGTC	.	212.0	9.0	105.0	0.0	.	431	.	.	Atlas-SNP
CHTOP	26097	hgsc.bcm.edu	hg19	1	153617713	153617713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	CHTOP	NM_001206612	exon6	c.A718G	p.M240V	GCCTACATGGCGC	.	166.0	7.0	57.0	0.0	.	34	.	.	Atlas-SNP
GBA	2629	hgsc.bcm.edu	hg19	1	155208419	155208419	+	Silent	SNP	C	C	T	rs75249684	bycluster;alternate_allele	TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	GBA	NM_001005742	exon6	c.G477A	p.R159R	GGGTACCCGGATG	.	649.0	59.0	272.0	0.0	.	46	.	.	Atlas-SNP
PKLR	5313	hgsc.bcm.edu	hg19	1	155264423	155264423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	PKLR	NM_000298	exon6	c.T815C	p.L272P	AAGCGCAGGTCTC	.	180.0	75.0	72.0	0.0	.	70	.	.	Atlas-SNP
OR10X1	128367	hgsc.bcm.edu	hg19	1	158548821	158548821	+	Missense_Mutation	SNP	G	G	A	rs150430213		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	OR10X1	NM_001004477	exon1	c.C869T	p.P290L	GTATAAGGGACTG	.	193.0	44.0	97.0	0.0	.	96	.	G|1.000;A|0.000	Atlas-SNP
PAPPA2	60676	hgsc.bcm.edu	hg19	1	176563717	176563717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	PAPPA2	NM_021936	exon3	c.G977A	p.R326H	GGATCCGCTCAGG	.	152.0	39.0	78.0	0.0	.	665	.	.	Atlas-SNP
IPO9	55705	hgsc.bcm.edu	hg19	1	201839912	201839912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	IPO9	NM_018085	exon18	c.G2335A	p.G779R	GAACTCGGGGAGA	.	108.0	6.0	37.0	0.0	.	98	.	.	Atlas-SNP
BROX	148362	hgsc.bcm.edu	hg19	1	222900566	222900566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	BROX	NM_144695	exon8	c.G637A	p.A213T	GCACTGGCGTATG	.	344.0	15.0	148.0	0.0	.	45	.	.	Atlas-SNP
PCNXL2	80003	hgsc.bcm.edu	hg19	1	233394789	233394789	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	PCNXL2	NM_014801	exon5	c.C819G	p.F273L	CGGCTGGAAAGAA	.	202.0	39.0	72.0	0.0	.	204	.	.	Atlas-SNP
OR14A16	284532	hgsc.bcm.edu	hg19	1	247978806	247978806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	OR14A16,NS,carcinoma,0,1	OR14A16	NM_001001966	exon1	c.G226A	p.A76T	TGGGAGCCGTGAC	.	404.0	45.0	186.0	0.0	.	90	.	.	Atlas-SNP
SPAST	6683	hgsc.bcm.edu	hg19	2	32289153	32289153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	SPAST	NM_199436	exon1	c.G253A	p.A85T	TCCCGCGCCCTCA	.	713.0	124.0	553.0	0.0	.	61	.	.	Atlas-SNP
SOS1	6654	hgsc.bcm.edu	hg19	2	39250269	39250269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	SOS1,scalp,malignant_melanoma,+1,1	SOS1	NM_005633	exon10	c.G1300A	p.G434R	CTTTTCCCTCCCA	.	83.0	25.0	63.0	0.0	.	134	.	.	Atlas-SNP
DYSF	8291	hgsc.bcm.edu	hg19	2	71839841	71839841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	DYSF_ENST00000410020,NS,carcinoma,0,2	DYSF	NM_001130982	exon40	c.G4334A	p.R1445H	TTGGCCGCCGGCC	.	199.0	56.0	143.0	0.0	.	536	.	.	Atlas-SNP
ST6GAL2	84620	hgsc.bcm.edu	hg19	2	107450508	107450508	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	ST6GAL2	NM_032528	exon3	c.G1038A	p.S346S	TACCTGCGAATTA	.	99.0	30.0	68.0	0.0	.	159	.	.	Atlas-SNP
SH3RF3	344558	hgsc.bcm.edu	hg19	2	109964272	109964272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	SH3RF3	NM_001099289	exon2	c.C716A	p.T239K	ACGGCACACAGGG	.	164.0	13.0	124.0	0.0	.	62	.	.	Atlas-SNP
METAP1D	254042	hgsc.bcm.edu	hg19	2	172930371	172930371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	METAP1D	NM_199227	exon4	c.C388T	p.R130W	GTTCATCGGGAAA	.	89.0	6.0	68.0	0.0	.	32	.	.	Atlas-SNP
HECW2	57520	hgsc.bcm.edu	hg19	2	197066049	197066049	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	HECW2	NM_020760	exon29	c.A4671T	p.E1557D	CAGTTTTTCATAA	.	92.0	24.0	95.0	0.0	.	239	.	.	Atlas-SNP
SLC16A14	151473	hgsc.bcm.edu	hg19	2	230914607	230914607	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	SLC16A14	NM_152527	exon3	c.C273T	p.G91G	GAACAAGCCGATG	.	300.0	101.0	238.0	0.0	.	75	.	.	Atlas-SNP
NGEF	25791	hgsc.bcm.edu	hg19	2	233785159	233785159	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	NGEF_ENST00000264051,NS,carcinoma,0,7	NGEF	NM_019850	exon5	c.G663A	p.E221E	CTCCTCCTCTTCT	.	74.0	4.0	39.0	0.0	.	198	.	.	Atlas-SNP
FBLN2	2199	hgsc.bcm.edu	hg19	3	13612701	13612701	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	FBLN2	NM_001998	exon2	c.G846A	p.E282E	AGAAGAGGAGGAG	.	111.0	5.0	83.0	0.0	.	137	.	.	Atlas-SNP
COLQ	8292	hgsc.bcm.edu	hg19	3	15498035	15498035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	COLQ	NM_005677	exon14	c.G1006A	p.A336T	CAATGGCGTTTTG	.	55.0	15.0	28.0	0.0	.	82	.	.	Atlas-SNP
GADL1	339896	hgsc.bcm.edu	hg19	3	30842571	30842571	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	GADL1	NM_207359	exon12	c.A1060T	p.K354X	ATTTTTTAAGAAG	.	85.0	29.0	58.0	0.0	.	91	.	.	Atlas-SNP
RASSF1	11186	hgsc.bcm.edu	hg19	3	50374725	50374725	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	RASSF1	NM_170713	exon1	c.T26G	p.F9C	ATTTCGAAAGAAG	.	56.0	20.0	53.0	0.0	.	46	.	.	Atlas-SNP
APPL1	26060	hgsc.bcm.edu	hg19	3	57282311	57282311	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	APPL1	NM_012096	exon10	c.C795T	p.D265D	GCCTGACCCAGAC	.	181.0	33.0	151.0	0.0	.	59	.	.	Atlas-SNP
CCNL1	57018	hgsc.bcm.edu	hg19	3	156876717	156876717	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	CCNL1	NM_020307	exon3	c.A426G	p.A142A	TCTAGGTGCTTCT	.	72.0	7.0	45.0	0.0	.	53	.	.	Atlas-SNP
PIK3CA	5290	hgsc.bcm.edu	hg19	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	bycluster	TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	PIK3CA_ENST00000263967,NS,adenocarcinoma,0,2044	PIK3CA	NM_006218	exon21	c.A3140G	p.H1047R	ATGCACATCATGG	.	128.0	10.0	128.0	0.0	.	8460	.	.	Atlas-SNP
STK32B	55351	hgsc.bcm.edu	hg19	4	5333066	5333066	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	STK32B	NM_018401	exon4	c.T380G	p.I127S	TCTACATCTGTGA	.	66.0	30.0	48.0	0.0	.	87	.	.	Atlas-SNP
GRXCR1	389207	hgsc.bcm.edu	hg19	4	42895607	42895607	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	GRXCR1	NM_001080476	exon1	c.C324A	p.G108G	CAGAGGCGTCAAA	.	72.0	6.0	65.0	0.0	.	78	.	.	Atlas-SNP
GRXCR1	389207	hgsc.bcm.edu	hg19	4	42964912	42964912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	GRXCR1	NM_001080476	exon2	c.C388A	p.P130T	CAGCAACCATCAA	.	131.0	49.0	101.0	0.0	.	78	.	.	Atlas-SNP
LRRC66	339977	hgsc.bcm.edu	hg19	4	52883570	52883570	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	LRRC66	NM_001024611	exon1	c.T210C	p.N70N	AAAGAAATTGAAA	.	144.0	59.0	92.0	0.0	.	128	.	.	Atlas-SNP
MANBA	4126	hgsc.bcm.edu	hg19	4	103561007	103561007	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	MANBA	NM_005908	exon14	c.A1877T	p.Q626L	TGGGCCTGCATCA	.	81.0	13.0	78.0	0.0	.	78	.	.	Atlas-SNP
TRIM2	23321	hgsc.bcm.edu	hg19	4	154191666	154191666	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	TRIM2	NM_015271	exon2	c.C210A	p.C70X	TTTCTGCGAGAGG	.	97.0	62.0	104.0	0.0	.	105	.	.	Atlas-SNP
IRF2	3660	hgsc.bcm.edu	hg19	4	185339806	185339806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	IRF2	NM_002199	exon4	c.A244G	p.R82G	CGCATCTGAAATT	.	59.0	22.0	76.0	0.0	.	53	.	.	Atlas-SNP
KIAA0947	23379	hgsc.bcm.edu	hg19	5	5463105	5463105	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	KIAA0947	NM_015325	exon13	c.A3658T	p.R1220X	AAATACAGAAAGC	.	146.0	44.0	151.0	0.0	.	301	.	.	Atlas-SNP
ZNF131	7690	hgsc.bcm.edu	hg19	5	43139306	43139306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	ZNF131	NM_003432	exon4	c.C266T	p.T89I	AGTTCACATATAC	.	122.0	5.0	142.0	0.0	.	51	.	.	Atlas-SNP
SKIV2L2	23517	hgsc.bcm.edu	hg19	5	54640445	54640445	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	SKIV2L2	NM_015360	exon9	c.A1002G	p.E334E	TGATGAAAATGTA	.	258.0	15.0	203.0	0.0	.	104	.	.	Atlas-SNP
DDX4	54514	hgsc.bcm.edu	hg19	5	55082361	55082361	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	DDX4	NM_024415	exon14	c.A880G	p.N294D	GAAGCTAATCTCT	.	110.0	31.0	98.0	0.0	.	194	.	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	hg19	5	127668623	127668623	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	FBN2	NM_001999	exon32	c.A4203G	p.G1401G	GCCGTTTCCAATC	.	174.0	51.0	158.0	0.0	.	858	.	.	Atlas-SNP
SLC4A9	83697	hgsc.bcm.edu	hg19	5	139743132	139743132	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	SLC4A9	NM_001258428	exon8	c.G1143T	p.R381R	GCAGCGGACCGGC	.	122.0	14.0	83.0	0.0	.	125	.	.	Atlas-SNP
PDGFRB	5159	hgsc.bcm.edu	hg19	5	149515368	149515368	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	PDGFRB	NM_002609	exon3	c.G114A	p.P38P	TGGCCCCGGGGGT	.	184.0	37.0	100.0	0.0	.	142	.	.	Atlas-SNP
C1QTNF2	114898	hgsc.bcm.edu	hg19	5	159776448	159776448	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	C1QTNF2	NM_031908	exon3	c.C720T	p.Y240Y	GAAGTAGTAGATC	.	74.0	8.0	43.0	0.0	.	33	.	.	Atlas-SNP
COL23A1	91522	hgsc.bcm.edu	hg19	5	177695729	177695729	+	Splice_Site	SNP	A	A	G	rs200266099		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	COL23A1	NM_173465	exon8	c.495+2T>C	.	TCACTTACCTTTT	.	62.0	21.0	29.0	0.0	.	47	.	A|0.999;G|0.001	Atlas-SNP
SLC17A3	10786	hgsc.bcm.edu	hg19	6	25849672	25849672	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	SLC17A3	NM_001098486	exon11	c.G1292C	p.G431A	GATGCTCCCATGA	.	132.0	46.0	84.0	0.0	.	95	.	.	Atlas-SNP
HIST1H3B	8358	hgsc.bcm.edu	hg19	6	26032006	26032006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	HIST1H3B,NS,carcinoma,0,1	HIST1H3B	NM_003537	exon1	c.G283A	p.E95K	AAGCCTCCTGCAG	.	89.0	31.0	82.0	0.0	.	59	.	.	Atlas-SNP
LEMD2	221496	hgsc.bcm.edu	hg19	6	33748859	33748859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	LEMD2	NM_181336	exon4	c.A925G	p.I309V	CGGCTATATATTC	.	68.0	26.0	30.0	0.0	.	20	.	.	Atlas-SNP
SEC63	11231	hgsc.bcm.edu	hg19	6	108214765	108214765	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	SEC63,NS,carcinoma,0,2	SEC63	NM_007214	exon16	c.T1595A	p.L532X	TTTTTTAAAGGTT	.	92.0	8.0	61.0	0.0	.	79	.	.	Atlas-SNP
FABP7	2173	hgsc.bcm.edu	hg19	6	123101529	123101529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	FABP7	NM_001446	exon2	c.G167A	p.S56N	CTCTCAGCACATT	.	272.0	89.0	185.0	0.0	.	10	.	.	Atlas-SNP
STXBP5	134957	hgsc.bcm.edu	hg19	6	147646126	147646126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	STXBP5	NM_139244	exon17	c.G1834A	p.G612S	TCTCCAGGTTATC	.	465.0	37.0	333.0	0.0	.	163	.	.	Atlas-SNP
MAP3K4	4216	hgsc.bcm.edu	hg19	6	161494612	161494612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	MAP3K4	NM_006724	exon5	c.G2065A	p.A689T	ATTGACGCTTTTG	.	113.0	32.0	107.0	0.0	.	364	.	.	Atlas-SNP
ZNF716	441234	hgsc.bcm.edu	hg19	7	57529086	57529086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	ZNF716	NM_001159279	exon4	c.C919T	p.R307C	TTTAGCCGCTCTT	.	74.0	24.0	60.0	0.0	.	207	.	.	Atlas-SNP
PHTF2	57157	hgsc.bcm.edu	hg19	7	77579094	77579094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	PHTF2_ENST00000416283,NS,carcinoma,0,2	PHTF2	NM_001127357	exon15	c.C1957T	p.L653F	GTTACCCTTGGAT	.	113.0	38.0	89.0	0.0	.	104	.	.	Atlas-SNP
NRCAM	4897	hgsc.bcm.edu	hg19	7	107808806	107808806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	NRCAM	NM_001037132	exon26	c.G3229T	p.A1077S	CAGCAGCTGCAGC	.	84.0	32.0	71.0	0.0	.	267	.	.	Atlas-SNP
OR2F1	26211	hgsc.bcm.edu	hg19	7	143657530	143657530	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	OR2F1,right_upper_lobe,carcinoma,0,2	OR2F1	NM_012369	exon1	c.C467G	p.S156C	TCAGCTCTCCTGT	.	137.0	45.0	104.0	0.0	.	71	.	.	Atlas-SNP
TMUB1	83590	hgsc.bcm.edu	hg19	7	150778970	150778970	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	TMUB1	NM_031434	exon3	c.G407C	p.R136P	TGTTCCCGGCCGG	.	27.0	7.0	25.0	0.0	.	7	.	.	Atlas-SNP
TMUB1	83590	hgsc.bcm.edu	hg19	7	150778972	150778972	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	TMUB1	NM_031434	exon3	c.C405A	p.G135G	TTCCCGGCCGGGA	.	27.0	7.0	26.0	0.0	.	7	.	.	Atlas-SNP
ADAM2	2515	hgsc.bcm.edu	hg19	8	39607233	39607233	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	ADAM2	NM_001464	exon17	c.T1828A	p.S610T	AGTATGAAGAACT	.	182.0	31.0	170.0	0.0	.	124	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113403006	113403006	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	CSMD3	NM_198123	exon36	c.G5821T	p.G1941X	AAATTCCACCACA	.	149.0	38.0	69.0	0.0	.	2325	.	.	Atlas-SNP
SLC30A8	169026	hgsc.bcm.edu	hg19	8	118174119	118174119	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	SLC30A8	NM_173851	exon5	c.T715A	p.Y239N	ATTATCTACTTTA	.	163.0	20.0	76.0	0.0	.	102	.	.	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	hg19	8	139696713	139696713	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	COL22A1	NM_152888	exon40	c.2968-1G>T	.	GAGTCCCTGGAGA	.	141.0	34.0	91.0	0.0	.	390	.	.	Atlas-SNP
FRMPD1	22844	hgsc.bcm.edu	hg19	9	37745441	37745441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	FRMPD1	NM_014907	exon16	c.G3412A	p.G1138S	TCCCCGGGTGATG	.	110.0	36.0	86.0	0.0	.	237	.	.	Atlas-SNP
PTPDC1	138639	hgsc.bcm.edu	hg19	9	96864001	96864001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	PTPDC1_ENST00000375360,NS,carcinoma,0,2	PTPDC1	NM_001253829	exon7	c.G2167A	p.D723N	CGAGCAGATGCCG	.	173.0	27.0	121.0	1.0	.	134	.	.	Atlas-SNP
GALNT12	79695	hgsc.bcm.edu	hg19	9	101570305	101570305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	GALNT12	NM_024642	exon1	c.G325A	p.D109N	CTCAGCGACCGCA	.	64.0	20.0	30.0	0.0	.	37	.	.	Atlas-SNP
GALNT12	79695	hgsc.bcm.edu	hg19	9	101597550	101597550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	GALNT12	NM_024642	exon5	c.G937A	p.G313R	GCTGGTGGGCTGT	.	119.0	41.0	88.0	0.0	.	37	.	.	Atlas-SNP
LCN9	392399	hgsc.bcm.edu	hg19	9	138556630	138556630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	LCN9	NM_001001676	exon3	c.A296G	p.Y99C	GGGAATACTCCAT	.	108.0	7.0	65.0	0.0	.	42	.	.	Atlas-SNP
PTPLA	9200	hgsc.bcm.edu	hg19	10	17645602	17645602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	PTPLA	NM_014241	exon4	c.C440T	p.S147L	ATTCTTGAACTCA	.	308.0	100.0	183.0	0.0	.	34	.	.	Atlas-SNP
MYO3A	53904	hgsc.bcm.edu	hg19	10	26446396	26446396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	MYO3A,NS,carcinoma,0,1	MYO3A	NM_017433	exon26	c.G2951A	p.R984Q	GAATTCGAAGACT	.	130.0	15.0	86.0	1.0	.	371	.	.	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	hg19	10	73560411	73560411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	CDH23	NM_022124	exon51	c.T7381C	p.S2461P	GTGCTGTCTTCTC	.	79.0	28.0	55.0	0.0	.	365	.	.	Atlas-SNP
SLIT1	6585	hgsc.bcm.edu	hg19	10	98762647	98762647	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	SLIT1	NM_003061	exon35	c.T3968A	p.L1323Q	TCCTGCAGCTCGT	.	130.0	54.0	118.0	0.0	.	154	.	.	Atlas-SNP
MMP21	118856	hgsc.bcm.edu	hg19	10	127460888	127460888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	MMP21	NM_147191	exon4	c.A878G	p.H293R	TAGGTGTGAGGCA	.	87.0	26.0	65.0	0.0	.	46	.	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	hg19	11	1258280	1258280	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	MUC5B	NM_002458	exon25	c.C3183T	p.C1061C	CTCCTGCCCGGAC	.	96.0	19.0	80.0	0.0	.	473	.	.	Atlas-SNP
IPO7	10527	hgsc.bcm.edu	hg19	11	9446761	9446761	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	IPO7	NM_006391	exon12	c.A1287C	p.K429N	AAAAAAAGATGGA	.	101.0	6.0	98.0	0.0	.	72	.	.	Atlas-SNP
TTC17	55761	hgsc.bcm.edu	hg19	11	43421488	43421488	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	TTC17	NM_018259	exon9	c.A1109T	p.D370V	AGCATGACCACTA	.	406.0	27.0	280.0	0.0	.	112	.	.	Atlas-SNP
SERPINH1	871	hgsc.bcm.edu	hg19	11	75280184	75280184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	SERPINH1	NM_001207014	exon5	c.A922G	p.K308E	TTGCCCAAGGGTG	.	118.0	11.0	72.0	0.0	.	33	.	.	Atlas-SNP
KIAA1377	57562	hgsc.bcm.edu	hg19	11	101863554	101863554	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	KIAA1377	NM_020802	exon10	c.T3290A	p.L1097X	ATACTTTACAAAT	.	378.0	111.0	273.0	0.0	.	111	.	.	Atlas-SNP
MLL	4297	hgsc.bcm.edu	hg19	11	118347552	118347552	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	MLL	NM_001197104	exon4	c.G3189A	p.V1063V	CTCTGTGCGAGGA	.	155.0	8.0	84.0	0.0	.	548	.	.	Atlas-SNP
KCNA6	3742	hgsc.bcm.edu	hg19	12	4920420	4920420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	KCNA6	NM_002235	exon1	c.C1213T	p.L405F	GATTCGCTTTTTC	.	141.0	25.0	103.0	0.0	.	122	.	.	Atlas-SNP
ARID2	196528	hgsc.bcm.edu	hg19	12	46244283	46244283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	ARID2	NM_152641	exon15	c.C2377A	p.Q793K	GTAATTCAACAAG	.	96.0	27.0	82.0	0.0	.	311	.	.	Atlas-SNP
ARHGAP9	64333	hgsc.bcm.edu	hg19	12	57871256	57871256	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	ARHGAP9	NM_001080157	exon3	c.A742T	p.S248C	TGCGACTGCGGCG	.	186.0	60.0	108.0	0.0	.	79	.	.	Atlas-SNP
MARS	4141	hgsc.bcm.edu	hg19	12	57892224	57892224	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	MARS	NM_004990	exon9	c.G909C	p.W303C	CCAGTGGAACACC	.	100.0	36.0	68.0	0.0	.	84	.	.	Atlas-SNP
ANKRD13A	88455	hgsc.bcm.edu	hg19	12	110437503	110437503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	ANKRD13A	NM_033121	exon1	c.G10A	p.A4T	TCCTCGGCCTGCG	.	112.0	11.0	89.0	0.0	.	39	.	.	Atlas-SNP
HCAR1	27198	hgsc.bcm.edu	hg19	12	123214615	123214615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	HCAR1	NM_032554	exon1	c.G272A	p.G91E	AAGAGCCCCACTC	.	92.0	34.0	66.0	0.0	.	21	.	.	Atlas-SNP
PSPC1	55269	hgsc.bcm.edu	hg19	13	20346623	20346623	+	Silent	SNP	T	T	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	PSPC1	NM_001042414	exon3	c.A433C	p.R145R	GAGGTCTGCTCTT	.	86.0	9.0	64.0	0.0	.	61	.	.	Atlas-SNP
ZMYM2	7750	hgsc.bcm.edu	hg19	13	20605572	20605572	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	ZMYM2	NM_001190964	exon11	c.G1965A	p.W655X	GGAATGGGAGGCA	.	131.0	39.0	103.0	0.0	.	191	.	.	Atlas-SNP
FAM194B	220081	hgsc.bcm.edu	hg19	13	46161363	46161363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	FAM194B	NM_182542	exon5	c.C691T	p.P231S	CGTCTGGACTCCT	.	94.0	14.0	71.0	0.0	.	42	.	.	Atlas-SNP
PML	5371	hgsc.bcm.edu	hg19	15	74324992	74324992	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	PML	NM_033244	exon5	c.C1334G	p.S445X	TACAGTCAGTGCC	.	247.0	94.0	173.0	0.0	.	169	.	.	Atlas-SNP
CCDC33	80125	hgsc.bcm.edu	hg19	15	74588203	74588203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	CCDC33	NM_025055	exon11	c.A1204G	p.T402A	AAGGACACAGTGA	.	151.0	13.0	101.0	0.0	.	160	.	.	Atlas-SNP
AGBL1	123624	hgsc.bcm.edu	hg19	15	86791026	86791026	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	AGBL1	NM_152336	exon6	c.C513T	p.C171C	GCTCTGCCTCAGG	.	71.0	25.0	61.0	0.0	.	151	.	.	Atlas-SNP
ACAN	176	hgsc.bcm.edu	hg19	15	89402510	89402510	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	ACAN	NM_001135	exon12	c.A6694G	p.T2232A	GCAGAGACGCATC	.	133.0	44.0	75.0	0.0	.	220	.	.	Atlas-SNP
THOC6	79228	hgsc.bcm.edu	hg19	16	3077415	3077415	+	Missense_Mutation	SNP	G	G	A	rs374499488		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	THOC6	NM_024339	exon12	c.G859A	p.G287R	CTGAGCGGGGAGC	.	32.0	5.0	22.0	0.0	.	40	.	.	Atlas-SNP
CDH1	999	hgsc.bcm.edu	hg19	16	68849586	68849586	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	CDH1,NS,carcinoma,0,1	CDH1	NM_004360	exon10	c.G1489T	p.E497X	GTGTCCGAGGACT	.	104.0	57.0	136.0	0.0	.	535	.	.	Atlas-SNP
RAP1GAP2	23108	hgsc.bcm.edu	hg19	17	2868924	2868924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	RAP1GAP2	NM_015085	exon8	c.C583T	p.R195W	TACCTCCGGGTCA	.	56.0	4.0	30.0	0.0	.	90	.	.	Atlas-SNP
AIPL1	23746	hgsc.bcm.edu	hg19	17	6331740	6331740	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	AIPL1	NM_014336	exon3	c.C363T	p.C121C	CAGCCCGCACGTG	.	33.0	6.0	26.0	0.0	.	34	.	.	Atlas-SNP
PFAS	5198	hgsc.bcm.edu	hg19	17	8172487	8172487	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	PFAS	NM_012393	exon28	c.G3922C	p.A1308P	CAGTGGGCATGGC	.	77.0	14.0	72.0	0.0	.	91	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11778277	11778277	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	DNAH9	NM_001372	exon53	c.A10254T	p.P3418P	CATTCCAGTCACC	.	79.0	34.0	43.0	0.0	.	695	.	.	Atlas-SNP
CACNA1G	8913	hgsc.bcm.edu	hg19	17	48667882	48667882	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	CACNA1G	NM_001256360	exon10	c.C2352T	p.S784S	CACCAGCCTCTTT	.	64.0	12.0	46.0	0.0	.	659	.	.	Atlas-SNP
EPX	8288	hgsc.bcm.edu	hg19	17	56281642	56281642	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	EPX	NM_000502	exon12	c.T2006C	p.I669T	GCAGAATTTCCTT	.	98.0	30.0	60.0	0.0	.	95	.	.	Atlas-SNP
MRC2	9902	hgsc.bcm.edu	hg19	17	60766907	60766907	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	MRC2	NM_006039	exon24	c.C3359G	p.A1120G	CCCCAGCAGCGCT	.	111.0	8.0	70.0	0.0	.	126	.	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80042151	80042151	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	FASN	NM_004104	exon28	c.C4878A	p.V1626V	CAGCAGGACAGAG	.	185.0	15.0	132.0	0.0	.	154	.	.	Atlas-SNP
NEDD4L	23327	hgsc.bcm.edu	hg19	18	56034978	56034978	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	NEDD4L	NM_001144967	exon22	c.G2064A	p.T688T	CAAAAGGGACAAC	.	111.0	10.0	103.0	0.0	.	126	.	.	Atlas-SNP
SLC25A23	79085	hgsc.bcm.edu	hg19	19	6442104	6442104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	SLC25A23	NM_024103	exon10	c.G1289T	p.G430V	CGCATGCCCTCCT	.	59.0	17.0	56.0	0.0	.	43	.	.	Atlas-SNP
ZNF557	79230	hgsc.bcm.edu	hg19	19	7075098	7075098	+	Missense_Mutation	SNP	G	G	T	rs377018544	alternate_allele	TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	ZNF557	NM_001044387	exon3	c.G13T	p.V5F	GCTGTCGTCCTGC	.	47.0	18.0	30.0	0.0	.	40	.	.	Atlas-SNP
RASAL3	64926	hgsc.bcm.edu	hg19	19	15565556	15565556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	RASAL3	NM_022904	exon12	c.G1870A	p.G624S	CCAAACCAAAGAG	.	167.0	10.0	131.0	0.0	.	49	.	.	Atlas-SNP
OR10H1	26539	hgsc.bcm.edu	hg19	19	15918067	15918067	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	OR10H1,NS,carcinoma,0,1	OR10H1	NM_013940	exon1	c.C781T	p.L261L	GCTTCAGGTAAAT	.	183.0	8.0	133.0	0.0	.	59	.	.	Atlas-SNP
MAP1S	55201	hgsc.bcm.edu	hg19	19	17830385	17830385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	MAP1S	NM_018174	exon1	c.G74A	p.G25E	AGTTCGGGAGCCC	.	167.0	58.0	117.0	0.0	.	74	.	.	Atlas-SNP
ZNF781	163115	hgsc.bcm.edu	hg19	19	38160112	38160112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	ZNF781	NM_152605	exon4	c.T938C	p.M313T	ACATTCATAAGGT	.	81.0	7.0	48.0	0.0	.	66	.	.	Atlas-SNP
GGN	199720	hgsc.bcm.edu	hg19	19	38876402	38876402	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	GGN	NM_152657	exon3	c.A1500G	p.P500P	GGGAGCTGGAGCC	.	42.0	7.0	33.0	0.0	.	50	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	38993233	38993233	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	RYR1	NM_001042723	exon48	c.G7701A	p.P2567P	TGCGCCGCTCTTT	.	74.0	19.0	42.0	0.0	.	708	.	.	Atlas-SNP
FPR2	2358	hgsc.bcm.edu	hg19	19	52272249	52272249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	FPR2	NM_001005738	exon2	c.T338C	p.V113A	GAAGTGTCTTCTT	.	95.0	18.0	63.0	0.0	.	66	.	.	Atlas-SNP
ZNF548	147694	hgsc.bcm.edu	hg19	19	57909862	57909862	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	ZNF548	NM_001172773	exon4	c.A243T	p.S81S	AGTGTCAGAGGTT	.	117.0	7.0	82.0	0.0	.	64	.	.	Atlas-SNP
C20orf194	25943	hgsc.bcm.edu	hg19	20	3306871	3306871	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	C20orf194	NM_001009984	exon13	c.T1161C	p.C387C	AGCATAACATGCA	.	397.0	72.0	297.0	0.0	.	83	.	.	Atlas-SNP
SEMG2	6407	hgsc.bcm.edu	hg19	20	43851661	43851661	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	SEMG2	NM_003008	exon2	c.A1388T	p.E463V	ATAAGGAAAATAA	.	204.0	16.0	124.0	0.0	.	92	.	.	Atlas-SNP
NFATC2	4773	hgsc.bcm.edu	hg19	20	50158976	50158976	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	NFATC2	NM_012340	exon1	c.G63A	p.G21G	GCTGCCCCCAGGC	.	307.0	116.0	206.0	0.0	.	112	.	.	Atlas-SNP
ZNF831	128611	hgsc.bcm.edu	hg19	20	57769174	57769174	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	ZNF831	NM_178457	exon1	c.A3100T	p.R1034W	ACTAGCAGGCCAG	.	42.0	4.0	31.0	0.0	.	287	.	.	Atlas-SNP
SCAF4	57466	hgsc.bcm.edu	hg19	21	33065744	33065744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	SCAF4	NM_020706	exon12	c.A1376G	p.H459R	CGTCGATGCCGAG	.	156.0	50.0	72.0	0.0	.	142	.	.	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	hg19	22	29885648	29885648	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	NEFH	NM_021076	exon4	c.A2019G	p.E673E	GGCAGAAGCAAAG	.	353.0	18.0	237.0	0.0	.	178	.	.	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	hg19	22	29885651	29885651	+	Silent	SNP	A	A	C	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	NEFH	NM_021076	exon4	c.A2022C	p.A674A	AGAAGCAAAGTCC	.	355.0	19.0	241.0	0.0	.	178	.	.	Atlas-SNP
CACNA1I	8911	hgsc.bcm.edu	hg19	22	40042812	40042812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	CACNA1I	NM_001003406	exon8	c.G1388A	p.R463Q	AGAGCCGGCGCCA	.	114.0	11.0	93.0	0.0	.	264	.	.	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	hg19	X	24382381	24382381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	.	NM_001136234	exon1	c.G1504A	p.A502T	GCTGCTGCTGCTG	.	241.0	19.0	171.0	0.0	.	.	.	.	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	hg19	X	24382382	24382382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	.	NM_001136234	exon1	c.C1505T	p.A502V	CTGCTGCTGCTGC	.	239.0	19.0	166.0	0.0	.	.	.	.	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	hg19	X	24382420	24382420	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	.	NM_001136234	exon1	c.G1543C	p.A515P	GCTGCTGCTGCTG	.	167.0	10.0	130.0	0.0	.	.	.	.	Atlas-SNP
PHKA1	5255	hgsc.bcm.edu	hg19	X	71813017	71813017	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	PHKA1	NM_002637	exon29	c.G3180A	p.L1060L	CCCATCCAGCCTT	.	180.0	75.0	170.0	0.0	.	129	.	.	Atlas-SNP
NRK	203447	hgsc.bcm.edu	hg19	X	105197132	105197132	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	NRK	NM_198465	exon28	c.G4620A	p.K1540K	AATTAAGAAGCTG	.	309.0	51.0	254.0	0.0	.	321	.	.	Atlas-SNP
COL4A5	1287	hgsc.bcm.edu	hg19	X	107863658	107863658	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	COL4A5	NM_033380	exon31	c.2677+2T>C	.	TCCAGGTAATTTG	.	175.0	21.0	121.0	0.0	.	262	.	.	Atlas-SNP
DDX26B	203522	hgsc.bcm.edu	hg19	X	134711160	134711160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	DDX26B	NM_182540	exon14	c.C1816A	p.Q606K	GGGCCACAAAACA	.	259.0	42.0	168.0	0.0	.	130	.	.	Atlas-SNP
FATE1	89885	hgsc.bcm.edu	hg19	X	150891213	150891213	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	FATE1	NM_033085	exon5	c.G534A	p.W178X	CCTGTGGCTGTGG	.	274.0	104.0	160.0	0.0	.	30	.	.	Atlas-SNP
LAMB1	3912	hgsc.bcm.edu	hg19	7	107603404	107603404	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	LAMB1	NM_002291	exon15	c.1804delG	p.D602fs	.	.	76.0	21.0	63.0	0.0	.	185	.	.	Atlas-INDEL
CD1E	913	hgsc.bcm.edu	hg19	1	158325883	158325889	+	Frame_Shift_Del	DEL	ATCATCC	ATCATCC	-	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	ATCATCC	ATCATCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	CD1E	NM_030893	exon4	c.891_897del	p.297_299del	.	.	108.0	14.0	54.0	0.0	.	129	.	.	Atlas-INDEL
CD1E	913	hgsc.bcm.edu	hg19	1	158325895	158325896	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AADI-01A-11D-A40R-10	TCGA-DD-AADI-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dba0ae12-2411-4434-99df-3c0ffe50d5b8	0c54a21e-f61a-458f-971c-33e10b96eec4	.	CD1E	NM_030893	exon4	c.904_905insT	p.G302fs	.	.	103.0	17.0	48.0	0.0	.	129	.	.	Atlas-INDEL
