Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
MTOR	2475	hgsc.bcm.edu	hg19	1	11184573	11184573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	MTOR,NS,malignant_melanoma,0,5	MTOR	NM_004958	exon47	c.C6644A	p.S2215Y	CGAAGAGATGTTG	.	111.0	16.0	124.0	0.0	.	327	.	.	Atlas-SNP
RIMKLA	284716	hgsc.bcm.edu	hg19	1	42865094	42865094	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	RIMKLA	NM_173642	exon2	c.G183A	p.K61K	CCAGAAGGCCCTC	.	48.0	8.0	50.0	0.0	.	32	.	.	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	hg19	1	103471625	103471625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	COL11A1	NM_080629	exon17	c.A1826G	p.K609R	CTGACCTTTGCCC	.	253.0	45.0	197.0	0.0	.	972	.	.	Atlas-SNP
VANGL1	81839	hgsc.bcm.edu	hg19	1	116194093	116194093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	VANGL1	NM_001172411	exon2	c.C59A	p.S20Y	AAAAATCTCACAG	.	45.0	13.0	49.0	0.0	.	65	.	.	Atlas-SNP
SEMA6C	10500	hgsc.bcm.edu	hg19	1	151105786	151105786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	SEMA6C	NM_001178061	exon20	c.G2063A	p.R688Q	TGGAGCCGGGCCA	.	176.0	30.0	101.0	0.0	.	70	.	.	Atlas-SNP
ZNF687	57592	hgsc.bcm.edu	hg19	1	151262451	151262451	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	ZNF687	NM_020832	exon6	c.T2932A	p.Y978N	GATGAATACGTGG	.	66.0	11.0	49.0	0.0	.	94	.	.	Atlas-SNP
CRTC2	200186	hgsc.bcm.edu	hg19	1	153924613	153924613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	CRTC2	NM_181715	exon10	c.C878T	p.P293L	TCTTCAGGGTCCA	.	113.0	38.0	90.0	0.0	.	58	.	.	Atlas-SNP
DUSP27	92235	hgsc.bcm.edu	hg19	1	167097157	167097157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	DUSP27	NM_001080426	exon5	c.A2789G	p.E930G	GCAAAGAGATGGA	.	111.0	9.0	73.0	0.0	.	235	.	.	Atlas-SNP
CNTN2	6900	hgsc.bcm.edu	hg19	1	205027173	205027173	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	CNTN2	NM_005076	exon3	c.C195T	p.A65A	CCGGGCCAGCCCT	.	173.0	83.0	120.0	0.0	.	116	.	.	Atlas-SNP
DYRK3	8444	hgsc.bcm.edu	hg19	1	206821451	206821451	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	DYRK3	NM_003582	exon3	c.A908T	p.K303M	AAAATAAGTTTCA	.	210.0	33.0	144.0	0.0	.	146	.	.	Atlas-SNP
RHOB	388	hgsc.bcm.edu	hg19	2	20647230	20647230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	RHOB	NM_004040	exon1	c.G4T	p.A2S	CTCATGGCGGCCA	.	68.0	12.0	52.0	0.0	.	18	.	.	Atlas-SNP
CAPN13	92291	hgsc.bcm.edu	hg19	2	30993223	30993223	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	CAPN13	NM_144575	exon5	c.A480G	p.Q160Q	TTGGTTTTGGTGG	.	122.0	23.0	125.0	0.0	.	70	.	.	Atlas-SNP
FOXN2	3344	hgsc.bcm.edu	hg19	2	48602537	48602537	+	Silent	SNP	A	A	C	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	FOXN2	NM_002158	exon7	c.A1251C	p.L417L	TTCCCTAATAAGT	.	43.0	5.0	43.0	0.0	.	39	.	.	Atlas-SNP
KIAA1841	84542	hgsc.bcm.edu	hg19	2	61333780	61333780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	KIAA1841	NM_032506	exon14	c.A1594G	p.T532A	CCCAAAACTGGGG	.	98.0	12.0	112.0	0.0	.	95	.	.	Atlas-SNP
PROM2	150696	hgsc.bcm.edu	hg19	2	95943741	95943741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	PROM2	NM_001165977	exon8	c.A1039G	p.M347V	TCCAGCATGGTCC	.	49.0	13.0	57.0	0.0	.	78	.	.	Atlas-SNP
SETD2	29072	hgsc.bcm.edu	hg19	3	47155365	47155365	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	SETD2	NM_014159	exon6	c.4715+1G>A	.	AACTTACGAAGGA	.	84.0	23.0	96.0	0.0	.	721	.	.	Atlas-SNP
PIK3CB	5291	hgsc.bcm.edu	hg19	3	138478043	138478043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	PIK3CB	NM_006219	exon1	c.G143T	p.R48L	GCTTCCCGAGGTA	.	382.0	81.0	336.0	0.0	.	103	.	.	Atlas-SNP
MECOM	2122	hgsc.bcm.edu	hg19	3	168806945	168806945	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	MECOM,mouth,carcinoma,0,1	MECOM	NM_004991	exon16	c.G3428C	p.G1143A	GAAAGTCCACTTT	.	66.0	3.0	74.0	0.0	.	216	.	.	Atlas-SNP
KIAA0226	9711	hgsc.bcm.edu	hg19	3	197431443	197431443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	KIAA0226	NM_014687	exon4	c.G433A	p.D145N	GTCTATCCCCGAG	.	144.0	22.0	139.0	0.0	.	136	.	.	Atlas-SNP
HNRNPD	3184	hgsc.bcm.edu	hg19	4	83294718	83294718	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	HNRNPD	NM_031370	exon1	c.G114A	p.A38A	CGCCGCCGCTGCC	.	48.0	4.0	46.0	0.0	.	23	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	90106600	90106600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	GPR98	NM_032119	exon74	c.G15523A	p.V5175M	ACCAACGTGGTTG	.	45.0	6.0	71.0	0.0	.	605	.	.	Atlas-SNP
HIST1H1C	3006	hgsc.bcm.edu	hg19	6	26056141	26056141	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	HIST1H1C	NM_005319	exon1	c.G516C	p.K172N	TGGGCTCTTAGCC	.	98.0	19.0	88.0	0.0	.	80	.	.	Atlas-SNP
AGR3	155465	hgsc.bcm.edu	hg19	7	16900171	16900171	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	AGR3	NM_176813	exon7	c.G404C	p.R135T	GAGTATCTTCCAG	.	112.0	22.0	134.0	0.0	.	19	.	.	Atlas-SNP
GLI3	2737	hgsc.bcm.edu	hg19	7	42085105	42085105	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	GLI3,NS,carcinoma,0,1	GLI3	NM_000168	exon6	c.C704G	p.A235G	TATTCTGCTGGGC	.	47.0	6.0	49.0	0.0	.	312	.	.	Atlas-SNP
C7orf25	79020	hgsc.bcm.edu	hg19	7	42949496	42949496	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	C7orf25	NM_001099858	exon2	c.A1178C	p.N393T	ACCACATTAATTC	.	202.0	32.0	152.0	0.0	.	36	.	.	Atlas-SNP
UBE3C	9690	hgsc.bcm.edu	hg19	7	157046730	157046730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	UBE3C	NM_014671	exon20	c.A2777G	p.Y926C	CAGACTACAGGCT	.	105.0	18.0	98.0	0.0	.	124	.	.	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	hg19	8	69020463	69020463	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	PREX2	NM_024870	exon24	c.T2835A	p.V945V	GGAAGTTTCTTAT	.	153.0	14.0	104.0	0.0	.	614	.	.	Atlas-SNP
NLRP6	171389	hgsc.bcm.edu	hg19	11	281308	281308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	NLRP6	NM_138329	exon4	c.G1574A	p.G525D	CTGGCGGCGTTGG	.	69.0	16.0	64.0	0.0	.	4	.	.	Atlas-SNP
MICALCL	84953	hgsc.bcm.edu	hg19	11	12315446	12315446	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	MICALCL	NM_032867	exon3	c.A468G	p.K156K	GGAAAAAGGGAGT	.	111.0	5.0	95.0	0.0	.	59	.	.	Atlas-SNP
BBOX1	8424	hgsc.bcm.edu	hg19	11	27114762	27114762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	BBOX1,right_upper_lobe,carcinoma,0,1	BBOX1	NM_003986	exon5	c.G382A	p.E128K	GATTTTGAAGATG	.	113.0	26.0	105.0	0.0	.	46	.	.	Atlas-SNP
UCP2	7351	hgsc.bcm.edu	hg19	11	73687988	73687988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	UCP2	NM_003355	exon5	c.G412T	p.D138Y	CCACATCCGTGGG	.	107.0	20.0	75.0	0.0	.	24	.	.	Atlas-SNP
GALNT6	11226	hgsc.bcm.edu	hg19	12	51773494	51773494	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	GALNT6	NM_007210	exon3	c.C72T	p.L24L	GAGGAAGAGGAAG	.	36.0	9.0	37.0	0.0	.	63	.	.	Atlas-SNP
OR9K2	441639	hgsc.bcm.edu	hg19	12	55524551	55524551	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	OR9K2	NM_001005243	exon1	c.T999C	p.I333I	AAATATTATTCTT	.	53.0	9.0	40.0	0.0	.	63	.	.	Atlas-SNP
ESYT1	23344	hgsc.bcm.edu	hg19	12	56532051	56532051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	ESYT1	NM_001184796	exon21	c.G2362A	p.E788K	GAGTTAGAGGAGG	.	108.0	14.0	78.0	0.0	.	84	.	.	Atlas-SNP
SHMT2	6472	hgsc.bcm.edu	hg19	12	57627403	57627403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	SHMT2	NM_005412	exon9	c.A1081G	p.M361V	CGGGCCATGGCAG	.	85.0	11.0	55.0	0.0	.	40	.	.	Atlas-SNP
MVK	4598	hgsc.bcm.edu	hg19	12	110029107	110029107	+	Missense_Mutation	SNP	G	G	A	rs104895352		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	MVK	NM_000431	exon9	c.G830A	p.R277H	GTGAGCGCGTGCT	.	88.0	9.0	73.0	0.0	.	42	.	.	Atlas-SNP
KIAA0586	9786	hgsc.bcm.edu	hg19	14	58938977	58938977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	KIAA0586	NM_001244189	exon20	c.G2773A	p.E925K	TTTGATGAAATAA	.	392.0	62.0	404.0	0.0	.	180	.	.	Atlas-SNP
TTBK2	146057	hgsc.bcm.edu	hg19	15	43038338	43038338	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	TTBK2	NM_173500	exon15	c.T3390A	p.S1130R	TCCTGGACTCTTG	.	55.0	13.0	64.0	0.0	.	82	.	.	Atlas-SNP
CRLF3	51379	hgsc.bcm.edu	hg19	17	29120592	29120592	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	CRLF3	NM_015986	exon5	c.C702G	p.F234L	TACTATGAATTCA	.	130.0	9.0	90.0	0.0	.	36	.	.	Atlas-SNP
ERN1	2081	hgsc.bcm.edu	hg19	17	62125306	62125306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	ERN1	NM_001433	exon19	c.C2441A	p.A814E	TCCATCGCAATCA	.	60.0	4.0	58.0	0.0	.	102	.	.	Atlas-SNP
RNF213	57674	hgsc.bcm.edu	hg19	17	78269372	78269372	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	RNF213	NM_001256071	exon10	c.T1771C	p.W591R	TACCTGTGGCAAC	.	116.0	12.0	95.0	0.0	.	766	.	.	Atlas-SNP
EPB41L3	23136	hgsc.bcm.edu	hg19	18	5423479	5423479	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	EPB41L3	NM_012307	exon11	c.C1237T	p.Q413X	GCGCTTGTGTCCT	.	166.0	31.0	143.0	0.0	.	222	.	.	Atlas-SNP
RPRD1A	55197	hgsc.bcm.edu	hg19	18	33607210	33607210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	RPRD1A	NM_018170	exon5	c.C550T	p.H184Y	TCTGATGAACTGC	.	204.0	46.0	208.0	0.0	.	30	.	.	Atlas-SNP
SUPT5H	6829	hgsc.bcm.edu	hg19	19	39966766	39966766	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	SUPT5H	NM_003169	exon28	c.A3070G	p.S1024G	GTTGTCAGCATTT	.	79.0	24.0	42.0	0.0	.	119	.	.	Atlas-SNP
NRSN2	80023	hgsc.bcm.edu	hg19	20	333968	333968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	NRSN2	NM_024958	exon4	c.G304A	p.D102N	GTGTTGGATCAGC	.	79.0	17.0	48.0	0.0	.	20	.	.	Atlas-SNP
RNF114	55905	hgsc.bcm.edu	hg19	20	48553085	48553085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	RNF114	NM_018683	exon1	c.C136T	p.H46Y	TGCGGACACGTGT	.	123.0	7.0	110.0	0.0	.	9	.	.	Atlas-SNP
SYCP2	10388	hgsc.bcm.edu	hg19	20	58467458	58467458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	SYCP2	NM_014258	exon23	c.A1951G	p.T651A	GTTTAGTAAGTTT	.	31.0	7.0	43.0	0.0	.	204	.	.	Atlas-SNP
PPARA	5465	hgsc.bcm.edu	hg19	22	46614190	46614190	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	PPARA	NM_001001928	exon5	c.C400G	p.L134V	CTCAAGCTGGTGT	.	83.0	14.0	71.0	0.0	.	36	.	.	Atlas-SNP
YY2	404281	hgsc.bcm.edu	hg19	X	21875452	21875452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	YY2	NM_206923	exon1	c.G850T	p.V284L	GTCCACGTATGTG	.	180.0	39.0	152.0	0.0	.	43	.	.	Atlas-SNP
FAM47A	158724	hgsc.bcm.edu	hg19	X	34148744	34148744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	FAM47A	NM_203408	exon1	c.G1652A	p.R551H	ACCCGACGACTCT	.	109.0	5.0	73.0	0.0	.	249	.	.	Atlas-SNP
GRIPAP1	56850	hgsc.bcm.edu	hg19	X	48840243	48840243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	GRIPAP1	NM_020137	exon15	c.C1216A	p.Q406K	TTTCTTGAAGTTG	.	90.0	18.0	99.0	0.0	.	128	.	.	Atlas-SNP
TRO	7216	hgsc.bcm.edu	hg19	X	54949797	54949797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	TRO	NM_016157	exon3	c.C832A	p.L278I	GAGGCTCTAAATG	.	289.0	60.0	262.0	0.0	.	246	.	.	Atlas-SNP
IGSF1	3547	hgsc.bcm.edu	hg19	X	130417074	130417074	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	IGSF1	NM_001555	exon6	c.G832T	p.E278X	TTGCCTCATTTTT	.	470.0	26.0	450.0	0.0	.	231	.	.	Atlas-SNP
TXLNG	55787	hgsc.bcm.edu	hg19	X	16836781	16836782	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	TXLNG	NM_018360	exon2	c.187_188insT	p.I63fs	.	.	483.0	93.0	439.0	0.0	.	40	.	.	Atlas-INDEL
FMO3	2328	hgsc.bcm.edu	hg19	1	171086300	171086302	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	FMO3	NM_001002294	exon9	c.1316_1318del	p.439_440del	.	.	142.0	16.0	135.0	0.0	.	73	.	.	Atlas-INDEL
MGAT4B	11282	hgsc.bcm.edu	hg19	5	179228997	179228997	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	MGAT4B	NM_054013	exon1	c.116delT	p.L39fs	.	.	152.0	48.0	123.0	0.0	.	41	.	.	Atlas-INDEL
LCE1F	353137	hgsc.bcm.edu	hg19	1	152749026	152749027	+	In_Frame_Ins	INS	-	-	CAGCTCTGGGGGCTGCTG	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	LCE1F	NM_178354	exon1	c.179_180insCAGCTCTGGGGGCTGCTG	p.C60delinsCSSGGCC	.	.	281.0	31.0	178.0	0.0	.	42	.	.	Atlas-INDEL
PPP1R12B	4660	hgsc.bcm.edu	hg19	1	202318209	202318209	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AADK-01A-11D-A40R-10	TCGA-DD-AADK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81255bf2-6aa2-4e6b-a03b-09b29c43c763	e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee	.	PPP1R12B	NM_001167857	exon1	c.229delC	p.L77fs	.	.	149.0	24.0	95.0	0.0	.	100	.	.	Atlas-INDEL
