Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PIK3CD	5293	hgsc.bcm.edu	hg19	1	9775778	9775778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	PIK3CD	NM_005026	exon4	c.C321A	p.D107E	GGGCGACCGCGTG	.	203.0	89.0	136.0	0.0	.	86	.	.	Atlas-SNP
EPB41	2035	hgsc.bcm.edu	hg19	1	29391656	29391656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	EPB41	NM_001166005	exon16	c.C2170A	p.P724T	CAAATCCCCACAG	.	171.0	66.0	115.0	0.0	.	118	.	.	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	hg19	1	34204803	34204803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	CSMD2	NM_052896	exon15	c.C2186A	p.T729N	GTGATGGTCTCTG	.	95.0	35.0	83.0	0.0	.	946	.	.	Atlas-SNP
CYP4A22	284541	hgsc.bcm.edu	hg19	1	47606518	47606518	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	CYP4A22	NM_001010969	exon2	c.T262G	p.Y88D	TGTCCTTATTGGA	.	138.0	49.0	70.0	0.0	.	60	.	.	Atlas-SNP
DOCK7	85440	hgsc.bcm.edu	hg19	1	62953084	62953084	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	DOCK7,NS,carcinoma,0,1	DOCK7	NM_033407	exon43	c.5401-1G>T	.	AGTACTCTGTATA	.	274.0	15.0	190.0	0.0	.	184	.	.	Atlas-SNP
ANGPTL3	27329	hgsc.bcm.edu	hg19	1	63070335	63070335	+	Silent	SNP	A	A	C	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ANGPTL3	NM_014495	exon7	c.C1230C	p.T410T	TGGAGAAAACAAC	.	443.0	165.0	369.0	1.0	.	42	.	.	Atlas-SNP
ANGPTL3	27329	hgsc.bcm.edu	hg19	1	63070357	63070357	+	Silent	SNP	A	A	G	rs4145257	byhapmap;alternate_allele	TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ANGPTL3	NM_014495	exon7	c.G1252G	p.E418E	AAATATAACAAAC	.	451.0	159.0	371.0	0.0	.	42	.	A|0.998;T|0.002	Atlas-SNP
ANGPTL3	27329	hgsc.bcm.edu	hg19	1	63070362	63070362	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ANGPTL3	NM_014495	exon7	c.G1257G	p.E419E	TAACAAACCAAGA	.	455.0	164.0	369.0	1.0	.	42	.	.	Atlas-SNP
ANGPTL3	27329	hgsc.bcm.edu	hg19	1	63070371	63070371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ANGPTL3	NM_014495	exon7	c.T1266G	p.I422M	AAGAGCAAAATCT	.	460.0	173.0	369.0	0.0	.	42	.	.	Atlas-SNP
MIER1	57708	hgsc.bcm.edu	hg19	1	67436507	67436507	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	MIER1	NM_001077700	exon9	c.T789A	p.D263E	TGATGATCAGCTC	.	245.0	102.0	203.0	0.0	.	86	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152280666	152280666	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	FLG	NM_002016	exon3	c.G6696T	p.G2232G	CCTGGGCCCTGAT	.	150.0	49.0	115.0	0.0	.	900	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152280667	152280667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	FLG	NM_002016	exon3	c.G6695T	p.G2232V	CTGGGCCCTGATG	.	150.0	48.0	117.0	0.0	.	900	.	.	Atlas-SNP
NUP210L	91181	hgsc.bcm.edu	hg19	1	154033101	154033101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	NUP210L	NM_001159484	exon20	c.T2765C	p.V922A	CCTTCCACAAGGC	.	109.0	37.0	75.0	0.0	.	181	.	.	Atlas-SNP
KCNN3	3782	hgsc.bcm.edu	hg19	1	154842234	154842234	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	KCNN3	NM_001204087	exon1	c.G207T	p.Q69H	CTGCTGCTGCTGC	.	77.0	5.0	56.0	0.0	.	141	.	.	Atlas-SNP
KCNN3	3782	hgsc.bcm.edu	hg19	1	154842235	154842235	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	KCNN3	NM_001204087	exon1	c.A206T	p.Q69L	TGCTGCTGCTGCT	.	76.0	5.0	58.0	0.0	.	141	.	.	Atlas-SNP
OR10Z1	128368	hgsc.bcm.edu	hg19	1	158576492	158576492	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	OR10Z1	NM_001004478	exon1	c.G264T	p.G88G	TGGGGGGGACCAG	.	83.0	33.0	61.0	0.0	.	99	.	.	Atlas-SNP
FMO3	2328	hgsc.bcm.edu	hg19	1	171083272	171083272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	FMO3	NM_006894	exon7	c.T953C	p.I318T	GGACCATATTTGA	.	90.0	33.0	57.0	0.0	.	73	.	.	Atlas-SNP
FMO3	2328	hgsc.bcm.edu	hg19	1	171083276	171083276	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	FMO3	NM_006894	exon7	c.T957G	p.F319L	CATATTTGAGGGC	.	89.0	32.0	56.0	0.0	.	73	.	.	Atlas-SNP
MYOG	4656	hgsc.bcm.edu	hg19	1	203055032	203055032	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	MYOG	NM_002479	exon1	c.G58T	p.E20X	AGTTTTCCCCATC	.	161.0	61.0	104.0	0.0	.	28	.	.	Atlas-SNP
MARC1	64757	hgsc.bcm.edu	hg19	1	220970004	220970004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	.	NM_022746	exon3	c.G469A	p.E157K	GAGATAGAGGGCA	.	126.0	45.0	86.0	0.0	.	.	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228556439	228556439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	OBSCN	NM_001271223	exon100	c.T22655C	p.M7552T	TCCTGATGGTGCA	.	99.0	37.0	68.0	0.0	.	2142	.	.	Atlas-SNP
OR2L2	26246	hgsc.bcm.edu	hg19	1	248202072	248202072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	OR2L2	NM_001004686	exon1	c.G503A	p.C168Y	CATATTGCAAGTC	.	68.0	27.0	58.0	0.0	.	115	.	.	Atlas-SNP
CTNNA2	1496	hgsc.bcm.edu	hg19	2	80101354	80101354	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	CTNNA2	NM_001164883	exon6	c.A738T	p.Q246H	CAAACAAGTCCAG	.	99.0	11.0	82.0	0.0	.	462	.	.	Atlas-SNP
LRRTM1	347730	hgsc.bcm.edu	hg19	2	80529914	80529914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	LRRTM1	NM_178839	exon2	c.G1031T	p.S344I	TCCGGGCTGGCGC	.	133.0	38.0	128.0	0.0	.	251	.	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	84880999	84880999	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	DNAH6	NM_001370	exon34	c.5634+1G>A	.	TTTGAGGTAAGTG	.	57.0	23.0	54.0	0.0	.	194	.	.	Atlas-SNP
CNTNAP5	129684	hgsc.bcm.edu	hg19	2	125530441	125530441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	CNTNAP5	NM_130773	exon17	c.C2596T	p.P866S	CAGTCTCCTTCTC	.	119.0	15.0	92.0	0.0	.	405	.	.	Atlas-SNP
AMER3	205147	hgsc.bcm.edu	hg19	2	131520209	131520209	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	FAM123C,NS,carcinoma,0,1	.	NM_152698	exon2	c.G564A	p.G188G	CCCAGGGGACCCG	.	58.0	21.0	55.0	0.0	.	.	.	.	Atlas-SNP
MAP3K19	80122	hgsc.bcm.edu	hg19	2	135743849	135743849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	.	NM_025052	exon7	c.A2593G	p.N865D	ACTTGTTAGAATT	.	95.0	23.0	71.0	0.0	.	.	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168107365	168107365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	XIRP2,NS,carcinoma,0,1	XIRP2	NM_152381	exon9	c.C9463T	p.P3155S	CCCCCACCAAGAA	.	96.0	43.0	113.0	0.0	.	914	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179434324	179434324	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	TTN	NM_001267550	exon326	c.T76535A	p.L25512H	AGGTCAAGATCAA	.	157.0	88.0	141.0	0.0	.	18412	.	.	Atlas-SNP
IDH1	3417	hgsc.bcm.edu	hg19	2	209110051	209110051	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	IDH1	NM_005896	exon5	c.A512C	p.N171T	TCAAAGTTATGTA	.	113.0	28.0	83.0	0.0	.	6310	.	.	Atlas-SNP
ANKZF1	55139	hgsc.bcm.edu	hg19	2	220096992	220096992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ANKZF1	NM_001042410	exon4	c.A272G	p.Y91C	AACATTATAAGCT	.	112.0	61.0	112.0	0.0	.	45	.	.	Atlas-SNP
STK11IP	114790	hgsc.bcm.edu	hg19	2	220471465	220471465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	STK11IP	NM_052902	exon12	c.G1052A	p.G351D	CCATGGGCCCACC	.	45.0	15.0	47.0	0.0	.	152	.	.	Atlas-SNP
TCAIM	285343	hgsc.bcm.edu	hg19	3	44434442	44434442	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	.	NM_173826	exon6	c.C668G	p.S223C	AACTGTCTCATCA	.	381.0	126.0	302.0	0.0	.	.	.	.	Atlas-SNP
PLXNB1	5364	hgsc.bcm.edu	hg19	3	48463572	48463572	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	PLXNB1	NM_001130082	exon6	c.T1462A	p.C488S	ATGCACAGTCCAG	.	92.0	34.0	60.0	0.0	.	150	.	.	Atlas-SNP
GPR156	165829	hgsc.bcm.edu	hg19	3	119911830	119911830	+	Nonsense_Mutation	SNP	G	G	A	rs138857726		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	GPR156	NM_001168271	exon4	c.C430T	p.R144X	AGAGTCGCCAGCT	.	79.0	10.0	50.0	0.0	.	85	.	G|1.000;A|0.000	Atlas-SNP
POLQ	10721	hgsc.bcm.edu	hg19	3	121168168	121168168	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	POLQ	NM_199420	exon26	c.T7258A	p.Y2420N	CTGTGTATCTGGA	.	159.0	72.0	116.0	0.0	.	273	.	.	Atlas-SNP
KPNA1	3836	hgsc.bcm.edu	hg19	3	122160952	122160952	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	KPNA1	NM_002264	exon10	c.A929G	p.Y310C	ACTTTATAATCAT	.	424.0	170.0	315.0	0.0	.	42	.	.	Atlas-SNP
PARP14	54625	hgsc.bcm.edu	hg19	3	122447347	122447347	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	PARP14	NM_017554	exon17	c.A5309G	p.Y1770C	ACCTGTATGACAC	.	137.0	59.0	76.0	0.0	.	242	.	.	Atlas-SNP
SEMA5B	54437	hgsc.bcm.edu	hg19	3	122658315	122658315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	SEMA5B	NM_001256347	exon5	c.A593G	p.N198S	AGGTAGTTCCTGT	.	89.0	31.0	73.0	0.0	.	303	.	.	Atlas-SNP
ATP11B	23200	hgsc.bcm.edu	hg19	3	182554178	182554178	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ATP11B	NM_014616	exon6	c.T472A	p.L158M	GCAGACTTGGTGC	.	113.0	39.0	89.0	0.0	.	115	.	.	Atlas-SNP
VWA5B2	90113	hgsc.bcm.edu	hg19	3	183955168	183955168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	VWA5B2	NM_138345	exon11	c.G1688A	p.R563K	TCTTCAGGGTGGA	.	71.0	37.0	41.0	0.0	.	47	.	.	Atlas-SNP
ZNF141	7700	hgsc.bcm.edu	hg19	4	366828	366828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ZNF141	NM_003441	exon4	c.G602A	p.C201Y	ACACTTGTGAAGA	.	126.0	56.0	76.0	0.0	.	48	.	.	Atlas-SNP
SLIT2	9353	hgsc.bcm.edu	hg19	4	20618809	20618809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	SLIT2	NM_004787	exon35	c.G4124A	p.C1375Y	ACCCTTGCCTTGG	.	152.0	63.0	97.0	0.0	.	290	.	.	Atlas-SNP
SLIT2	9353	hgsc.bcm.edu	hg19	4	20618810	20618810	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	SLIT2	NM_004787	exon35	c.C4125A	p.C1375X	CCCTTGCCTTGGA	.	155.0	65.0	99.0	0.0	.	290	.	.	Atlas-SNP
BMP3	651	hgsc.bcm.edu	hg19	4	81952752	81952752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	BMP3	NM_001201	exon1	c.C314T	p.A105V	CAGCAGCAGGTGA	.	36.0	21.0	58.0	0.0	.	59	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13829748	13829748	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	DNAH5	NM_001369	exon38	c.C6315T	p.A2105A	CATCATGGCCACT	.	122.0	63.0	80.0	0.0	.	868	.	.	Atlas-SNP
PDZD2	23037	hgsc.bcm.edu	hg19	5	31799600	31799600	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	PDZD2	NM_178140	exon1	c.C245G	p.T82S	CAGAGACTGTGGG	.	150.0	62.0	104.0	0.0	.	306	.	.	Atlas-SNP
PCDHA9	9752	hgsc.bcm.edu	hg19	5	140229700	140229700	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	PCDHA9_ENST00000532602,NS,carcinoma,0,2	PCDHA9	NM_031857	exon1	c.G1620A	p.A540A	CGACGCGGGCGTG	.	87.0	31.0	63.0	0.0	.	373	.	.	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150923055	150923055	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	FAT2	NM_001447	exon9	c.C7633A	p.R2545R	TTTCCCGATCCAG	.	77.0	24.0	63.0	0.0	.	465	.	.	Atlas-SNP
PWWP2A	114825	hgsc.bcm.edu	hg19	5	159519506	159519506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	PWWP2A	NM_001130864	exon2	c.G2151T	p.Q717H	GCGTGACTGGAAG	.	97.0	4.0	67.0	0.0	.	64	.	.	Atlas-SNP
C5orf45	51149	hgsc.bcm.edu	hg19	5	179264710	179264710	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	C5orf45	NM_016175	exon7	c.A713C	p.K238T	GAACTTTTTCTAG	.	90.0	35.0	87.0	0.0	.	23	.	.	Atlas-SNP
OR2B3	442184	hgsc.bcm.edu	hg19	6	29054417	29054417	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	OR2B3	NM_001005226	exon1	c.T609C	p.S203S	TAGTACACTAAAG	.	149.0	72.0	104.0	0.0	.	44	.	.	Atlas-SNP
COL11A2	1302	hgsc.bcm.edu	hg19	6	33157128	33157128	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	COL11A2	NM_080681	exon2	c.G201A	p.Q67Q	ACTGAGCTGGGCA	.	110.0	5.0	74.0	0.0	.	124	.	.	Atlas-SNP
MUT	4594	hgsc.bcm.edu	hg19	6	49416564	49416564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	MUT	NM_000255	exon7	c.A1409G	p.E470G	GCACATTCTTCAA	.	184.0	81.0	126.0	0.0	.	70	.	.	Atlas-SNP
MUT	4594	hgsc.bcm.edu	hg19	6	49416604	49416604	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	MUT	NM_000255	exon7	c.A1369T	p.K457X	CAGCTTTGGCCAT	.	173.0	76.0	107.0	0.0	.	70	.	.	Atlas-SNP
KHDRBS2	202559	hgsc.bcm.edu	hg19	6	62442656	62442656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	KHDRBS2	NM_152688	exon7	c.G824A	p.G275D	CCGTAGCCATCAT	.	132.0	31.0	91.0	0.0	.	103	.	.	Atlas-SNP
MAP3K4	4216	hgsc.bcm.edu	hg19	6	161455352	161455352	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	MAP3K4	NM_006724	exon2	c.T214A	p.S72T	GACTTCTCCGATG	.	79.0	21.0	103.0	0.0	.	364	.	.	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	hg19	7	20698136	20698136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ABCB5	NM_001163941	exon14	c.A1544G	p.N515S	AATTTAATACATT	.	46.0	25.0	39.0	0.0	.	357	.	.	Atlas-SNP
HOXA7	3204	hgsc.bcm.edu	hg19	7	27195946	27195946	+	Silent	SNP	G	G	C	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	HOXA7	NM_006896	exon1	c.C219G	p.G73G	GTCGGCGCCCAGG	.	227.0	67.0	195.0	0.0	.	34	.	.	Atlas-SNP
SEMA3A	10371	hgsc.bcm.edu	hg19	7	83640603	83640603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	SEMA3A,right_upper_lobe,carcinoma,0,1	SEMA3A	NM_006080	exon8	c.G821T	p.G274V	TGCCCTCCAAAGT	.	115.0	52.0	84.0	0.0	.	121	.	.	Atlas-SNP
SEMA3A	10371	hgsc.bcm.edu	hg19	7	83640604	83640604	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	SEMA3A	NM_006080	exon8	c.G820T	p.G274X	GCCCTCCAAAGTC	.	115.0	52.0	83.0	0.0	.	121	.	.	Atlas-SNP
ORC5	5001	hgsc.bcm.edu	hg19	7	103808951	103808951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ORC5	NM_002553	exon9	c.A847G	p.K283E	CATCTTTCTGTAG	.	79.0	45.0	27.0	0.0	.	48	.	.	Atlas-SNP
ORC5	5001	hgsc.bcm.edu	hg19	7	103808952	103808952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ORC5	NM_002553	exon9	c.G846T	p.Q282H	ATCTTTCTGTAGC	.	75.0	44.0	28.0	0.0	.	48	.	.	Atlas-SNP
PPP1R3A	5506	hgsc.bcm.edu	hg19	7	113518118	113518118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	PPP1R3A	NM_002711	exon4	c.C3029A	p.P1010Q	ATCATTGGCCCTA	.	126.0	78.0	51.0	0.0	.	317	.	.	Atlas-SNP
ESYT2	57488	hgsc.bcm.edu	hg19	7	158586392	158586392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ESYT2	NM_020728	exon4	c.T677C	p.V226A	GTGTATACCTTAA	.	61.0	33.0	31.0	0.0	.	70	.	.	Atlas-SNP
MBOAT4	619373	hgsc.bcm.edu	hg19	8	29989500	29989500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	MBOAT4	NM_001100916	exon3	c.C1267A	p.L423M	AAAGCAGAATACA	.	209.0	76.0	161.0	0.0	.	31	.	.	Atlas-SNP
FGFR1	2260	hgsc.bcm.edu	hg19	8	38273520	38273520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	FGFR1	NM_001174067	exon14	c.G1815T	p.Q605H	CCGGGCCTGCAGG	.	47.0	15.0	37.0	0.0	.	284	.	.	Atlas-SNP
SAMD12	401474	hgsc.bcm.edu	hg19	8	119391802	119391802	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	SAMD12	NM_207506	exon4	c.C460T	p.Q154X	TACCTTGTGTGAG	.	145.0	20.0	80.0	0.0	.	24	.	.	Atlas-SNP
ADCY8	114	hgsc.bcm.edu	hg19	8	131896827	131896827	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ADCY8	NM_001115	exon8	c.T2092C	p.S698P	GGCTGGAGTCTTT	.	54.0	17.0	46.0	0.0	.	291	.	.	Atlas-SNP
SCRIB	23513	hgsc.bcm.edu	hg19	8	144875222	144875222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	SCRIB	NM_015356	exon29	c.C3941T	p.P1314L	TTGGCGGGCAGCT	.	92.0	33.0	70.0	0.0	.	192	.	.	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	hg19	9	2123796	2123796	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	SMARCA2	NM_139045	exon27	c.G3840A	p.L1280L	TGAGCTGCCCTCC	.	112.0	8.0	87.0	0.0	.	313	.	.	Atlas-SNP
SPAG8	26206	hgsc.bcm.edu	hg19	9	35811575	35811575	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	SPAG8	NM_001039592	exon2	c.C468T	p.G156G	GCCAGAGCCATGG	.	65.0	28.0	63.0	0.0	.	67	.	.	Atlas-SNP
TRIM32	22954	hgsc.bcm.edu	hg19	9	119461915	119461915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	TRIM32	NM_012210	exon2	c.G1894T	p.V632F	CTGCTGGTCTTGG	.	98.0	46.0	72.0	0.0	.	67	.	.	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	hg19	10	49917835	49917835	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	WDFY4	NM_020945	exon2	c.A58C	p.N20H	TCCAAAAATGAAG	.	74.0	36.0	75.0	0.0	.	205	.	.	Atlas-SNP
LBX1	10660	hgsc.bcm.edu	hg19	10	102988325	102988325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	LBX1	NM_006562	exon1	c.C248T	p.S83L	AGCGGCGAGGTCT	.	36.0	27.0	41.0	0.0	.	18	.	.	Atlas-SNP
PPRC1	23082	hgsc.bcm.edu	hg19	10	103898443	103898443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	PPRC1	NM_015062	exon3	c.A410G	p.N137S	TGGACAATGCAGA	.	53.0	33.0	60.0	0.0	.	151	.	.	Atlas-SNP
C10orf118	55088	hgsc.bcm.edu	hg19	10	115922915	115922915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	C10orf118	NM_018017	exon2	c.T113C	p.L38S	TTTTCTAATTTGC	.	70.0	45.0	56.0	0.0	.	70	.	.	Atlas-SNP
RASSF10	644943	hgsc.bcm.edu	hg19	11	13032049	13032049	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	.	NM_001080521	exon1	c.C926G	p.P309R	CGCCCCCTCTAGC	.	102.0	18.0	80.0	0.0	.	.	.	.	Atlas-SNP
KIAA1549L	25758	hgsc.bcm.edu	hg19	11	33689596	33689596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	.	NM_012194	exon20	c.G5446T	p.A1816S	TCTGACGCTCCCC	.	93.0	50.0	72.0	0.0	.	.	.	.	Atlas-SNP
ZNF408	79797	hgsc.bcm.edu	hg19	11	46726573	46726573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ZNF408	NM_024741	exon5	c.G1323T	p.Q441H	TGACCAGTGTGGC	.	87.0	29.0	66.0	0.0	.	70	.	.	Atlas-SNP
C11orf24	53838	hgsc.bcm.edu	hg19	11	68029831	68029831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	C11orf24	NM_022338	exon4	c.C632T	p.A211V	CGTGTGGCCAATG	.	128.0	40.0	123.0	0.0	.	35	.	.	Atlas-SNP
C11orf24	53838	hgsc.bcm.edu	hg19	11	68029832	68029832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	C11orf24	NM_022338	exon4	c.G631T	p.A211S	GTGTGGCCAATGT	.	127.0	40.0	124.0	0.0	.	35	.	.	Atlas-SNP
DHCR7	1717	hgsc.bcm.edu	hg19	11	71146549	71146549	+	Missense_Mutation	SNP	T	T	C	rs375187933		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	DHCR7	NM_001163817	exon9	c.A1300G	p.I434V	TGTAGATGATGTA	.	86.0	20.0	49.0	0.0	.	98	.	.	Atlas-SNP
SLCO2B1	11309	hgsc.bcm.edu	hg19	11	74915600	74915600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	SLCO2B1	NM_007256	exon14	c.A2105G	p.K702R	CAGGGAAGAAGCC	.	83.0	16.0	57.0	0.0	.	84	.	.	Atlas-SNP
CNTN5	53942	hgsc.bcm.edu	hg19	11	99942502	99942502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	CNTN5	NM_001243270	exon11	c.G1365T	p.M455I	TGGAATGTATCAG	.	128.0	56.0	94.0	0.0	.	324	.	.	Atlas-SNP
COPS7A	50813	hgsc.bcm.edu	hg19	12	6837158	6837158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	COPS7A	NM_001164094	exon3	c.G229T	p.D77Y	TACGCTGACTACT	.	59.0	28.0	44.0	0.0	.	26	.	.	Atlas-SNP
METTL20	254013	hgsc.bcm.edu	hg19	12	31815050	31815050	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	METTL20	NM_173802	exon2	c.A163T	p.T55S	GAGAACACTGAAG	.	120.0	52.0	102.0	0.0	.	23	.	.	Atlas-SNP
KRT5	3852	hgsc.bcm.edu	hg19	12	52911408	52911408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	KRT5	NM_000424	exon5	c.G1058T	p.S353I	GTCCGGCTGCGGT	.	54.0	11.0	39.0	0.0	.	88	.	.	Atlas-SNP
CTDSP2	10106	hgsc.bcm.edu	hg19	12	58217408	58217408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	CTDSP2	NM_005730	exon8	c.C793A	p.L265I	GCCCAAGGCTGGT	.	56.0	7.0	36.0	0.0	.	25	.	.	Atlas-SNP
KERA	11081	hgsc.bcm.edu	hg19	12	91450006	91450006	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	KERA	NM_007035	exon2	c.T53C	p.V18A	GACCACACAGTGT	.	82.0	5.0	59.0	0.0	.	62	.	.	Atlas-SNP
PRDM4	11108	hgsc.bcm.edu	hg19	12	108128174	108128174	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	PRDM4	NM_012406	exon12	c.T2219C	p.L740P	TTGGTTAGATAAG	.	171.0	75.0	147.0	0.0	.	64	.	.	Atlas-SNP
CCDC63	160762	hgsc.bcm.edu	hg19	12	111345151	111345151	+	Missense_Mutation	SNP	C	C	A	rs371014584	alternate_allele	TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	CCDC63	NM_152591	exon12	c.C1563A	p.D521E	CCTGGACCACAGC	.	49.0	21.0	40.0	0.0	.	89	.	.	Atlas-SNP
EFHA1	221154	hgsc.bcm.edu	hg19	13	22069447	22069447	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	EFHA1	NM_152726	exon11	c.G1053A	p.K351K	AGCTCTCTTAAAC	.	90.0	24.0	89.0	0.0	.	33	.	.	Atlas-SNP
FLT1	2321	hgsc.bcm.edu	hg19	13	28963914	28963914	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	FLT1	NM_001159920	exon13	c.A1988C	p.K663T	ACAGCCTTTTTGT	.	48.0	33.0	45.0	0.0	.	393	.	.	Atlas-SNP
UBL3	5412	hgsc.bcm.edu	hg19	13	30341820	30341820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.,1	UBL3	NM_007106	exon4	c.C236T	p.P79L	CCAAAAGGAAGTT	.	70.0	4.0	84.0	0.0	.	13	.	.	Atlas-SNP
CCNA1	8900	hgsc.bcm.edu	hg19	13	37007255	37007255	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	CCNA1	NM_003914	exon2	c.C194G	p.A65G	CCGATGCTTGTCA	.	43.0	31.0	78.0	0.0	.	91	.	.	Atlas-SNP
CSNK1A1L	122011	hgsc.bcm.edu	hg19	13	37679379	37679379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	CSNK1A1L,colon,carcinoma,0,2	CSNK1A1L	NM_145203	exon1	c.C15A	p.S5R	GGAGCCGCTGTTG	.	64.0	43.0	80.0	0.0	.	69	.	.	Atlas-SNP
EDNRB	1910	hgsc.bcm.edu	hg19	13	78475302	78475302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	EDNRB	NM_001201397	exon5	c.A1112G	p.Y371C	CAGAAATAGAAAC	.	97.0	43.0	54.0	0.0	.	172	.	.	Atlas-SNP
MYH7	4625	hgsc.bcm.edu	hg19	14	23895186	23895186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	MYH7	NM_000257	exon19	c.G2149T	p.D717Y	GGAAGTCCCCGTA	.	89.0	32.0	66.0	0.0	.	349	.	.	Atlas-SNP
ZFYVE26	23503	hgsc.bcm.edu	hg19	14	68256275	68256275	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ZFYVE26	NM_015346	exon16	c.G2796A	p.L932L	GTTGAGCAGCTTG	.	48.0	36.0	51.0	0.0	.	223	.	.	Atlas-SNP
ZFP36L1	677	hgsc.bcm.edu	hg19	14	69256756	69256756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ZFP36L1	NM_001244701	exon3	c.C718T	p.P240S	AGCGGGGCCCGTA	.	35.0	23.0	60.0	0.0	.	47	.	.	Atlas-SNP
FURIN	5045	hgsc.bcm.edu	hg19	15	91424928	91424928	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	FURIN	NM_002569	exon16	c.C2205T	p.V735V	CCTGGTCCTGCAG	.	139.0	61.0	110.0	0.0	.	85	.	.	Atlas-SNP
SEZ6L2	26470	hgsc.bcm.edu	hg19	16	29889696	29889696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	SEZ6L2	NM_001243332	exon10	c.G1624T	p.D542Y	GCCAGTCGGGAGA	.	58.0	49.0	37.0	0.0	.	137	.	.	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	hg19	16	30735749	30735749	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	SRCAP	NM_006662	exon25	c.T5004C	p.V1668V	CCCGGTTCCGTCA	.	74.0	57.0	97.0	0.0	.	298	.	.	Atlas-SNP
SETD1A	9739	hgsc.bcm.edu	hg19	16	30990708	30990708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	SETD1A	NM_014712	exon14	c.C3601T	p.R1201W	GCTCCCCGGGGCG	.	115.0	86.0	103.0	0.0	.	143	.	.	Atlas-SNP
PHKB	5257	hgsc.bcm.edu	hg19	16	47497889	47497889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	PHKB_ENST00000299167,NS,carcinoma,0,1	PHKB	NM_001031835	exon2	c.G40A	p.A14T	TCTTCCGCTTTCT	.	78.0	23.0	73.0	0.0	.	298	.	.	Atlas-SNP
USP10	9100	hgsc.bcm.edu	hg19	16	84779047	84779047	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	USP10	NM_001272075	exon5	c.A972G	p.A324A	GAGTGCATCACCT	.	63.0	46.0	100.0	0.0	.	51	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578235	7578235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	TP53_ENST00000545858,temporoparietal,glioma,0,24	TP53	NM_000546	exon6	c.A614G	p.Y205C	TCCAAATACTCCA	.	101.0	70.0	139.0	0.0	.	33396	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11593003	11593003	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	DNAH9	NM_001372	exon20	c.C3864T	p.D1288D	CCCTGACTATAAG	.	66.0	56.0	91.0	0.0	.	695	.	.	Atlas-SNP
GRN	2896	hgsc.bcm.edu	hg19	17	42427830	42427830	+	Silent	SNP	G	G	A	rs373703310		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	GRN	NM_002087	exon6	c.G483A	p.R161R	AGACAGGGTGCAC	.	52.0	16.0	50.0	0.0	.	51	.	.	Atlas-SNP
SMCHD1	23347	hgsc.bcm.edu	hg19	18	2763754	2763754	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	SMCHD1	NM_015295	exon37	c.A4686G	p.E1562E	ACTTGAATTCCCC	.	148.0	58.0	128.0	0.0	.	88	.	.	Atlas-SNP
TCEB3B	51224	hgsc.bcm.edu	hg19	18	44560876	44560876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	TCEB3B	NM_016427	exon1	c.T760C	p.C254R	CCCCGCATGATTT	.	66.0	26.0	56.0	0.0	.	141	.	.	Atlas-SNP
GPR108	56927	hgsc.bcm.edu	hg19	19	6730371	6730371	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	GPR108	NM_001080452	exon18	c.A1584G	p.E528E	GAGGCCTTCCCGG	.	121.0	42.0	96.0	0.0	.	35	.	.	Atlas-SNP
SIN3B	23309	hgsc.bcm.edu	hg19	19	16988394	16988394	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	SIN3B	NM_015260	exon18	c.G2994C	p.E998D	GACCGAGGGCGCG	.	48.0	18.0	43.0	0.0	.	90	.	.	Atlas-SNP
ANKLE1	126549	hgsc.bcm.edu	hg19	19	17396553	17396553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ANKLE1	NM_152363	exon8	c.G1600T	p.V534L	GGTGTTGTGTCCC	.	81.0	28.0	69.0	0.0	.	27	.	.	Atlas-SNP
FXYD1	5348	hgsc.bcm.edu	hg19	19	35632088	35632088	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	FXYD1	NM_005031	exon4	c.C147T	p.I49I	CTTCATCCTGGGC	.	37.0	10.0	30.0	0.0	.	6	.	.	Atlas-SNP
LRFN1	57622	hgsc.bcm.edu	hg19	19	39798880	39798880	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	LRFN1	NM_020862	exon2	c.T1709A	p.V570D	CCCTTGACGCGGC	.	123.0	53.0	96.0	0.0	.	59	.	.	Atlas-SNP
SPTBN4	57731	hgsc.bcm.edu	hg19	19	41026029	41026029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	SPTBN4	NM_020971	exon16	c.C3625T	p.R1209C	GATCTACGCCAGG	.	38.0	14.0	36.0	0.0	.	213	.	.	Atlas-SNP
CEACAM3	1084	hgsc.bcm.edu	hg19	19	42314898	42314898	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	CEACAM3	NM_001815	exon6	c.C656G	p.P219R	AGGCCCCCCTACC	.	101.0	47.0	88.0	0.0	.	37	.	.	Atlas-SNP
SULT2A1	6822	hgsc.bcm.edu	hg19	19	48389503	48389503	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	SULT2A1	NM_003167	exon1	c.T12C	p.D4D	TAAGAAATCGTCC	.	117.0	60.0	98.0	0.0	.	49	.	.	Atlas-SNP
NLRP7	199713	hgsc.bcm.edu	hg19	19	55451284	55451284	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	NLRP7_ENST00000328092,caecum,carcinoma,0,2	NLRP7	NM_001127255	exon4	c.G903T	p.T301T	GGGCCGCGTGGTG	.	89.0	5.0	68.0	0.0	.	411	.	.	Atlas-SNP
ZNF551	90233	hgsc.bcm.edu	hg19	19	58199257	58199257	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ZNF551	NM_138347	exon3	c.A1614G	p.K538K	TGGCAAATCTTTT	.	88.0	35.0	83.0	0.0	.	65	.	.	Atlas-SNP
CST11	140880	hgsc.bcm.edu	hg19	20	23433401	23433401	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	CST11	NM_130794	exon1	c.A48G	p.L16L	AGTCAATAGAATG	.	121.0	55.0	94.0	0.0	.	27	.	.	Atlas-SNP
C20orf118	140711	hgsc.bcm.edu	hg19	20	35507490	35507490	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	C20orf118	NM_080628	exon3	c.T236A	p.L79Q	GGAGTCTGGTCTT	.	84.0	29.0	60.0	0.0	.	21	.	.	Atlas-SNP
SEMG2	6407	hgsc.bcm.edu	hg19	20	43850459	43850459	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	SEMG2	NM_003008	exon2	c.T186C	p.S62S	AGGCAGTTTTTCT	.	264.0	33.0	202.0	0.0	.	92	.	.	Atlas-SNP
ZNF831	128611	hgsc.bcm.edu	hg19	20	57767217	57767217	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ZNF831	NM_178457	exon1	c.G1143A	p.P381P	GGGCCCGGGGCCA	.	107.0	45.0	67.0	0.0	.	287	.	.	Atlas-SNP
CRYBA4	1413	hgsc.bcm.edu	hg19	22	27021475	27021475	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	CRYBA4	NM_001886	exon4	c.A189C	p.Q63H	CTTCCAAGGGCAG	.	45.0	19.0	37.0	0.0	.	33	.	.	Atlas-SNP
CXCR3	2833	hgsc.bcm.edu	hg19	X	70837372	70837372	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	CXCR3	NM_001142797	exon2	c.A91G	p.I31V	TTGTGATTGAGTC	.	85.0	62.0	47.0	0.0	.	57	.	.	Atlas-SNP
ZNF711	7552	hgsc.bcm.edu	hg19	X	84526085	84526085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ZNF711	NM_021998	exon9	c.G1537T	p.G513C	GGGAAGGGTTTTC	.	115.0	102.0	93.0	0.0	.	198	.	.	Atlas-SNP
DOCK11	139818	hgsc.bcm.edu	hg19	X	117676789	117676789	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	DOCK11	NM_144658	exon2	c.A204G	p.P68P	GTTCCCAATGGAA	.	208.0	161.0	141.0	0.0	.	185	.	.	Atlas-SNP
GABRQ	55879	hgsc.bcm.edu	hg19	X	151818238	151818238	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	GABRQ	NM_018558	exon6	c.G644C	p.W215S	TATTCTGGGATGA	.	58.0	50.0	42.0	0.0	.	131	.	.	Atlas-SNP
ETNK1	55500	hgsc.bcm.edu	hg19	12	22837867	22837901	+	Frame_Shift_Del	DEL	TGCATTAAAAGTGCCTGAGTAAAGAAGAGATTTAA	TGCATTAAAAGTGCCTGAGTAAAGAAGAGATTTAA	-	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	TGCATTAAAAGTGCCTGAGTAAAGAAGAGATTTAA	TGCATTAAAAGTGCCTGAGTAAAGAAGAGATTTAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ETNK1	NM_018638	exon8	c.1337_1381del	p.446_453del	.	.	79.0	14.0	88.0	0.0	.	61	.	.	Atlas-INDEL
FAM120A	23196	hgsc.bcm.edu	hg19	9	96278439	96278439	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	FAM120A	NM_014612	exon7	c.1305delG	p.S435fs	.	.	359.0	175.0	304.0	0.0	.	105	.	.	Atlas-INDEL
NOSIP	51070	hgsc.bcm.edu	hg19	19	50063276	50063291	+	Frame_Shift_Del	DEL	GGGTCCCATAGCCCGA	GGGTCCCATAGCCCGA	-	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	GGGTCCCATAGCCCGA	GGGTCCCATAGCCCGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	NOSIP	NM_001270960	exon3	c.77_92del	p.26_31del	.	.	112.0	27.0	92.0	0.0	.	28	.	.	Atlas-INDEL
ATP8A2	51761	hgsc.bcm.edu	hg19	13	26594099	26594100	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ATP8A2	NM_016529	exon37	c.3543_3544insA	p.T1181fs	.	.	61.0	16.0	60.0	0.0	.	181	.	.	Atlas-INDEL
TAPBPL	55080	hgsc.bcm.edu	hg19	12	6566826	6566838	+	Frame_Shift_Del	DEL	ACTATACAGGACG	ACTATACAGGACG	-	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	ACTATACAGGACG	ACTATACAGGACG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	TAPBPL	NM_018009	exon4	c.819_831del	p.273_277del	.	.	111.0	35.0	106.0	0.0	.	21	.	.	Atlas-INDEL
ARHGEF12	23365	hgsc.bcm.edu	hg19	11	120319893	120319894	+	Frame_Shift_Ins	INS	-	-	GGAG	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	ARHGEF12	NM_015313	exon21	c.1813_1814insGGAG	p.R605fs	.	.	124.0	52.0	93.0	0.0	.	133	.	.	Atlas-INDEL
WDR35	57539	hgsc.bcm.edu	hg19	2	20173444	20173447	+	Frame_Shift_Del	DEL	CATG	CATG	-	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	CATG	CATG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	WDR35	NM_001006657	exon8	c.760_763del	p.254_255del	.	.	133.0	55.0	149.0	0.0	.	92	.	.	Atlas-INDEL
TMCO6	55374	hgsc.bcm.edu	hg19	5	140022524	140022525	+	Frame_Shift_Ins	INS	-	-	CACAG	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	TMCO6	NM_018502	exon7	c.704_705insCACAG	p.S235fs	.	.	97.0	24.0	61.0	0.0	.	30	.	.	Atlas-INDEL
C5orf45	51149	hgsc.bcm.edu	hg19	5	179264714	179264714	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AADL-01A-11D-A40R-10	TCGA-DD-AADL-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2a6b995-9bef-41e2-8e57-896039e6579d	12f9780c-620f-4e1c-af89-a3905b81bc11	.	C5orf45	NM_016175	exon7	c.710delG	p.R237fs	.	.	92.0	34.0	88.0	0.0	.	23	.	.	Atlas-INDEL
