Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CROCC	9696	hgsc.bcm.edu	hg19	1	17296811	17296811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	CROCC	NM_014675	exon34	c.G5515A	p.E1839K	CAAGACGAGCGGC	.	165.0	27.0	92.0	0.0	.	185	.	.	Atlas-SNP
EBNA1BP2	10969	hgsc.bcm.edu	hg19	1	43638006	43638006	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	EBNA1BP2	NM_001159936	exon1	c.G87A	p.P29P	TACTTCCGGTTTG	.	60.0	25.0	65.0	0.0	.	37	.	.	Atlas-SNP
COL24A1	255631	hgsc.bcm.edu	hg19	1	86289219	86289219	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	COL24A1	NM_152890	exon45	c.A3789G	p.E1263E	ACTTACTTCAGAT	.	133.0	33.0	147.0	0.0	.	202	.	.	Atlas-SNP
DPYD	1806	hgsc.bcm.edu	hg19	1	98015267	98015267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	DPYD,acral,malignant_melanoma,0,2	DPYD	NM_000110	exon12	c.G1373A	p.R458K	CCCCATCTGTTAA	.	67.0	14.0	78.0	0.0	.	219	.	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	144886226	144886226	+	Missense_Mutation	SNP	T	T	G	rs139542367	alternate_allele	TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	PDE4DIP	NM_001198832	exon26	c.A3206C	p.Q1069P	TCTTCCTGAAGAC	.	163.0	19.0	137.0	0.0	.	817	.	.	Atlas-SNP
RFX5	5993	hgsc.bcm.edu	hg19	1	151315082	151315082	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	RFX5	NM_000449	exon11	c.G1431A	p.G477G	CCTTTCCCCACTT	.	122.0	15.0	90.0	0.0	.	69	.	.	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	hg19	1	152083480	152083480	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	TCHH	NM_007113	exon3	c.A2213T	p.K738M	CGCCTCTTTTCCT	.	91.0	6.0	52.0	0.0	.	275	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152280916	152280916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	FLG	NM_002016	exon3	c.G6446A	p.R2149K	CCCTGTCTTCCTC	.	162.0	24.0	91.0	0.0	.	900	.	.	Atlas-SNP
NTRK1	4914	hgsc.bcm.edu	hg19	1	156851354	156851354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	NTRK1	NM_002529	exon17	c.C2311T	p.R771C	CAGCAACGCCACA	.	202.0	25.0	147.0	0.0	.	287	.	.	Atlas-SNP
KIRREL	55243	hgsc.bcm.edu	hg19	1	158061204	158061204	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	KIRREL	NM_018240	exon11	c.G1329T	p.V443V	TACAGTGGAGAGG	.	151.0	79.0	99.0	0.0	.	346	.	.	Atlas-SNP
ADAMTS4	9507	hgsc.bcm.edu	hg19	1	161163059	161163059	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ADAMTS4	NM_005099	exon7	c.T1855G	p.C619G	GTTTGCACTGGTC	.	71.0	5.0	43.0	0.0	.	171	.	.	Atlas-SNP
UAP1	6675	hgsc.bcm.edu	hg19	1	162551100	162551100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	UAP1	NM_003115	exon5	c.G685A	p.A229T	TATCGGGCACTTG	.	161.0	20.0	125.0	0.0	.	47	.	.	Atlas-SNP
PBX1	5087	hgsc.bcm.edu	hg19	1	164776788	164776788	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	PBX1	NM_001204963	exon5	c.A711G	p.R237R	GAAGAGACGGAAT	.	308.0	46.0	180.0	0.0	.	60	.	.	Atlas-SNP
UCK2	7371	hgsc.bcm.edu	hg19	1	165865569	165865569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	UCK2	NM_012474	exon4	c.G499A	p.V167I	CGCAGAGGTGCGT	.	113.0	15.0	68.0	0.0	.	31	.	.	Atlas-SNP
TNFSF4	7292	hgsc.bcm.edu	hg19	1	173176191	173176191	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	TNFSF4	NM_003326	exon1	c.A125C	p.Y42S	CAGATGTAGGTGA	.	107.0	57.0	86.0	0.0	.	29	.	.	Atlas-SNP
ZBTB37	84614	hgsc.bcm.edu	hg19	1	173839522	173839522	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ZBTB37	NM_032522	exon3	c.C159G	p.S53R	TGCCAGCTCCCCC	.	218.0	30.0	141.0	0.0	.	38	.	.	Atlas-SNP
TOR1AIP2	163590	hgsc.bcm.edu	hg19	1	179815788	179815788	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	TOR1AIP2	NM_001199260	exon7	c.A831T	p.G277G	CTTCCGTCCTCTC	.	103.0	10.0	97.0	0.0	.	38	.	.	Atlas-SNP
FAM129A	116496	hgsc.bcm.edu	hg19	1	184764664	184764664	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	FAM129A	NM_052966	exon14	c.A2234T	p.E745V	TCTTCTTCATTTT	.	87.0	11.0	61.0	0.0	.	98	.	.	Atlas-SNP
SERTAD4	56256	hgsc.bcm.edu	hg19	1	210414923	210414923	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	SERTAD4	NM_019605	exon4	c.A312G	p.E104E	TGAGGAACGAGCC	.	160.0	22.0	100.0	0.0	.	53	.	.	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	hg19	1	214814115	214814115	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	CENPF	NM_016343	exon12	c.A2434C	p.S812R	GAGAGGAGTGAAT	.	249.0	35.0	151.0	0.0	.	321	.	.	Atlas-SNP
RAB3GAP2	25782	hgsc.bcm.edu	hg19	1	220364508	220364508	+	Silent	SNP	T	T	C	rs149874983	alternate_allele	TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	RAB3GAP2	NM_012414	exon14	c.A1389G	p.Q463Q	AAGGAATTGAGCT	.	147.0	22.0	105.0	0.0	.	120	.	T|1.000;G|0.000	Atlas-SNP
EPHX1	2052	hgsc.bcm.edu	hg19	1	226030084	226030084	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	EPHX1	NM_001136018	exon7	c.T949A	p.S317T	AATGACTCTCCTG	.	74.0	9.0	52.0	0.0	.	57	.	.	Atlas-SNP
PLD5	200150	hgsc.bcm.edu	hg19	1	242511470	242511470	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	PLD5	NM_152666	exon3	c.C264T	p.A88A	GTCCACGGCTGAA	.	62.0	22.0	43.0	0.0	.	216	.	.	Atlas-SNP
ZBTB18	10472	hgsc.bcm.edu	hg19	1	244217368	244217368	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	.	NM_205768	exon2	c.T292C	p.F98L	CTCCAGTTCAAAG	.	112.0	42.0	74.0	0.0	.	.	.	.	Atlas-SNP
TRIM58	25893	hgsc.bcm.edu	hg19	1	248039449	248039449	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	TRIM58	NM_015431	exon6	c.C1119T	p.T373T	GGAAACCACGCCA	.	169.0	23.0	114.0	0.0	.	143	.	.	Atlas-SNP
KIDINS220	57498	hgsc.bcm.edu	hg19	2	8871439	8871439	+	Missense_Mutation	SNP	G	G	T	rs202036173	bycluster;alternate_allele	TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	KIDINS220,NS,carcinoma,0,1	KIDINS220	NM_020738	exon30	c.C4727A	p.A1576E	AGGAGCGCATCCG	.	88.0	4.0	53.0	0.0	.	136	.	.	Atlas-SNP
GREB1	9687	hgsc.bcm.edu	hg19	2	11777860	11777860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	GREB1_ENST00000381486,NS,carcinoma,0,1	GREB1	NM_014668	exon31	c.G5365T	p.A1789S	TCTGCCGCGGTCG	.	48.0	3.0	38.0	0.0	.	308	.	.	Atlas-SNP
NT5C1B	93034	hgsc.bcm.edu	hg19	2	18765411	18765411	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	NT5C1B	NM_001199087	exon6	c.T1065A	p.Y355X	GAGCTGATACTCC	.	187.0	30.0	115.0	0.0	.	72	.	.	Atlas-SNP
HADHB	3032	hgsc.bcm.edu	hg19	2	26502110	26502110	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	HADHB	NM_000183	exon9	c.G738A	p.L246L	TGCACTGCGCTCT	.	92.0	11.0	91.0	0.0	.	50	.	.	Atlas-SNP
PPP1R21	129285	hgsc.bcm.edu	hg19	2	48692100	48692100	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	PPP1R21	NM_152994	exon8	c.A719C	p.N240T	CTCTGAACGTTCC	.	291.0	29.0	241.0	0.0	.	47	.	.	Atlas-SNP
PEX13	5194	hgsc.bcm.edu	hg19	2	61258830	61258830	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	PEX13	NM_002618	exon2	c.A369G	p.E123E	AGCTGAAGAAAGC	.	102.0	34.0	91.0	0.0	.	27	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613036	73613036	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ALMS1	NM_015120	exon1	c.G40C	p.E14Q	CTGGAGGAGGAGG	.	168.0	10.0	124.0	0.0	.	384	.	.	Atlas-SNP
DQX1	165545	hgsc.bcm.edu	hg19	2	74752644	74752644	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	DQX1	NM_133637	exon2	c.G213A	p.E71E	ACCAGGCTCCCCA	.	107.0	19.0	79.0	0.0	.	95	.	.	Atlas-SNP
MGAT4A	11320	hgsc.bcm.edu	hg19	2	99242216	99242216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	MGAT4A	NM_012214	exon15	c.G1551T	p.Q517H	AGAATTCTGAATA	.	247.0	45.0	285.0	0.0	.	51	.	.	Atlas-SNP
TBC1D8	11138	hgsc.bcm.edu	hg19	2	101650198	101650198	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	TBC1D8	NM_001102426	exon10	c.A1581G	p.S527S	AGGGTGTGAGGCA	.	109.0	24.0	117.0	0.0	.	169	.	.	Atlas-SNP
RANBP2	5903	hgsc.bcm.edu	hg19	2	109384438	109384438	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	RANBP2	NM_006267	exon20	c.T7443C	p.D2481D	GACAGATGTTATT	.	131.0	25.0	98.0	0.0	.	488	.	.	Atlas-SNP
SCN2A	6326	hgsc.bcm.edu	hg19	2	166243456	166243456	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	SCN2A	NM_001040143	exon25	c.T4752C	p.S1584S	GATCTCTCTTCGT	.	179.0	18.0	95.0	0.0	.	589	.	.	Atlas-SNP
GALNT3	2591	hgsc.bcm.edu	hg19	2	166605296	166605296	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	GALNT3	NM_004482	exon11	c.G1897C	p.D633H	CTTAATCATTTTG	.	85.0	55.0	46.0	0.0	.	65	.	.	Atlas-SNP
GLS	2744	hgsc.bcm.edu	hg19	2	191819351	191819351	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	GLS	NM_014905	exon16	c.A1754T	p.D585V	ACTATGATTCTAG	.	239.0	42.0	187.0	0.0	.	47	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196620956	196620956	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	DNAH7	NM_018897	exon62	c.T11487C	p.N3829N	TTTGACATTCAAA	.	314.0	47.0	236.0	0.0	.	512	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196774843	196774843	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	DNAH7	NM_018897	exon25	c.A4012T	p.T1338S	CCTTGGTAGTTTC	.	125.0	16.0	107.0	0.0	.	512	.	.	Atlas-SNP
PTH2R	5746	hgsc.bcm.edu	hg19	2	209353870	209353870	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	PTH2R	NM_005048	exon11	c.T1210A	p.F404I	AACTCCTTTCAGG	.	50.0	5.0	46.0	0.0	.	92	.	.	Atlas-SNP
ZNF142	7701	hgsc.bcm.edu	hg19	2	219508527	219508527	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ZNF142	NM_001105537	exon8	c.A2712G	p.S904S	GATGGGTGAATCT	.	89.0	4.0	60.0	0.0	.	190	.	.	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	hg19	2	225642958	225642958	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	DOCK10	NM_014689	exon51	c.A5699T	p.E1900V	TTAGGCTCTTTAT	.	94.0	12.0	97.0	0.0	.	308	.	.	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	hg19	2	225684228	225684228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	DOCK10	NM_014689	exon29	c.G3202A	p.D1068N	CTCGGTCCATAAA	.	298.0	54.0	260.0	0.0	.	308	.	.	Atlas-SNP
SH3BP5	9467	hgsc.bcm.edu	hg19	3	15300443	15300443	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	SH3BP5	NM_004844	exon7	c.C784G	p.R262G	TGGAGCGCCGCCG	.	77.0	14.0	63.0	0.0	.	32	.	.	Atlas-SNP
UBE2E1	7324	hgsc.bcm.edu	hg19	3	23932096	23932096	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	UBE2E1	NM_003341	exon6	c.A581G	p.X194X	CTACATAAATTGG	.	168.0	47.0	147.0	0.0	.	15	.	.	Atlas-SNP
MLH1	4292	hgsc.bcm.edu	hg19	3	37059089	37059089	+	Missense_Mutation	SNP	A	A	T	rs63751598	bycluster	TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	MLH1	NM_000249	exon10	c.A883T	p.S295C	TACCTCAGGTAAT	.	96.0	4.0	123.0	0.0	.	226	.	.	Atlas-SNP
SCN10A	6336	hgsc.bcm.edu	hg19	3	38739345	38739345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	SCN10A	NM_006514	exon27	c.A5366G	p.D1789G	GGCAGGTCCATCT	.	80.0	24.0	86.0	0.0	.	359	.	.	Atlas-SNP
ABHD14A	25864	hgsc.bcm.edu	hg19	3	52011894	52011894	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ABHD14A	NM_015407	exon2	c.T77A	p.V26E	CTGTGGTACAGAC	.	27.0	6.0	44.0	0.0	.	15	.	.	Atlas-SNP
TLR9	54106	hgsc.bcm.edu	hg19	3	52255355	52255355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	TLR9	NM_017442	exon2	c.C2977T	p.L993F	AGAGGAGGACACT	.	89.0	25.0	113.0	0.0	.	72	.	.	Atlas-SNP
ERC2	26059	hgsc.bcm.edu	hg19	3	56468944	56468944	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ERC2	NM_015576	exon2	c.G92T	p.R31I	CTTGTTCTTCGGT	.	70.0	15.0	71.0	0.0	.	221	.	.	Atlas-SNP
POU1F1	5449	hgsc.bcm.edu	hg19	3	87313643	87313643	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	POU1F1	NM_001122757	exon3	c.T312C	p.L104L	TTTATAAAGACAA	.	172.0	29.0	203.0	0.0	.	70	.	.	Atlas-SNP
ABHD10	55347	hgsc.bcm.edu	hg19	3	111710309	111710309	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ABHD10	NM_018394	exon5	c.T662A	p.F221Y	ACAGTTTCATTAA	.	162.0	46.0	181.0	0.0	.	20	.	.	Atlas-SNP
CCDC80	151887	hgsc.bcm.edu	hg19	3	112357345	112357345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	CCDC80	NM_199511	exon2	c.A1408G	p.R470G	CCCGCCTGTCCAT	.	71.0	32.0	91.0	0.0	.	100	.	.	Atlas-SNP
NR1I2	8856	hgsc.bcm.edu	hg19	3	119530393	119530393	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	NR1I2	NM_022002	exon4	c.G456C	p.M152I	GATCATGTCCGAC	.	77.0	15.0	96.0	0.0	.	44	.	.	Atlas-SNP
NR1I2	8856	hgsc.bcm.edu	hg19	3	119530394	119530394	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	NR1I2	NM_022002	exon4	c.T457A	p.S153T	ATCATGTCCGACG	.	81.0	17.0	99.0	0.0	.	44	.	.	Atlas-SNP
CASR	846	hgsc.bcm.edu	hg19	3	122002614	122002614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	CASR	NM_001178065	exon7	c.T1843C	p.F615L	ATCGAGTTTCTGT	.	72.0	8.0	74.0	0.0	.	190	.	.	Atlas-SNP
CCDC14	64770	hgsc.bcm.edu	hg19	3	123674900	123674900	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	CCDC14	NM_022757	exon4	c.A366G	p.E122E	TGAATCTTCATTT	.	101.0	11.0	129.0	0.0	.	97	.	.	Atlas-SNP
MSL2	55167	hgsc.bcm.edu	hg19	3	135870012	135870012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	MSL2	NM_018133	exon2	c.A1711G	p.I571V	TGTCTATAGCTTC	.	104.0	20.0	118.0	0.0	.	63	.	.	Atlas-SNP
MME	4311	hgsc.bcm.edu	hg19	3	154878219	154878219	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	MME	NM_007287	exon17	c.T1642A	p.S548T	TACTCTTCAGGAA	.	92.0	20.0	102.0	0.0	.	133	.	.	Atlas-SNP
ST6GAL1	6480	hgsc.bcm.edu	hg19	3	186790725	186790725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ST6GAL1	NM_003032	exon5	c.A794G	p.D265G	ACTCAGATATCCC	.	127.0	31.0	130.0	0.0	.	36	.	.	Atlas-SNP
ATP13A5	344905	hgsc.bcm.edu	hg19	3	192992998	192992998	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ATP13A5	NM_198505	exon30	c.C3490G	p.L1164V	CTGCTAGCTTCTT	.	83.0	20.0	91.0	0.0	.	171	.	.	Atlas-SNP
COMMD8	54951	hgsc.bcm.edu	hg19	4	47465616	47465616	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	COMMD8	NM_017845	exon1	c.A53T	p.E18V	CCCAGCTCGGCCG	.	69.0	13.0	57.0	0.0	.	15	.	.	Atlas-SNP
FAM13A	10144	hgsc.bcm.edu	hg19	4	89689194	89689194	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	FAM13A	NM_014883	exon12	c.A1475C	p.N492T	GTGGAATTGAGAC	.	134.0	33.0	206.0	0.0	.	181	.	.	Atlas-SNP
FSTL5	56884	hgsc.bcm.edu	hg19	4	162307147	162307147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	FSTL5	NM_020116	exon16	c.G2296A	p.V766M	AGAGCACATCAGT	.	84.0	26.0	145.0	0.0	.	207	.	.	Atlas-SNP
TLR3	7098	hgsc.bcm.edu	hg19	4	187004594	187004594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	TLR3	NM_003265	exon4	c.T1754C	p.L585S	AGGATTTATTTGA	.	145.0	18.0	177.0	0.0	.	83	.	.	Atlas-SNP
NIPBL	25836	hgsc.bcm.edu	hg19	5	36986168	36986168	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	NIPBL	NM_015384	exon10	c.G2886A	p.K962K	AATCAAGAGGGAT	.	1463.0	280.0	1313.0	2.0	.	513	.	.	Atlas-SNP
LRRC70	100130733	hgsc.bcm.edu	hg19	5	61875597	61875597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	LRRC70	NM_181506	exon2	c.A332G	p.Y111C	ATCTATATTTTCT	.	153.0	20.0	129.0	0.0	.	19	.	.	Atlas-SNP
ZNF366	167465	hgsc.bcm.edu	hg19	5	71756336	71756336	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ZNF366	NM_152625	exon2	c.C988T	p.Q330X	TGTGCTGCATCAT	.	44.0	14.0	52.0	0.0	.	108	.	.	Atlas-SNP
LRRTM2	26045	hgsc.bcm.edu	hg19	5	138209107	138209107	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	LRRTM2	NM_015564	exon2	c.T1143C	p.Y381Y	TTTTGTATATTCA	.	99.0	11.0	90.0	0.0	.	42	.	.	Atlas-SNP
UBE2D2	7322	hgsc.bcm.edu	hg19	5	138994470	138994470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	UBE2D2	NM_003339	exon5	c.C223A	p.H75N	ATTTATCATCCAA	.	261.0	136.0	276.0	0.0	.	17	.	.	Atlas-SNP
UBE2D2	7322	hgsc.bcm.edu	hg19	5	138994471	138994471	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	UBE2D2	NM_003339	exon5	c.A224T	p.H75L	TTTATCATCCAAA	.	259.0	135.0	273.0	0.0	.	17	.	.	Atlas-SNP
ANKHD1	54882	hgsc.bcm.edu	hg19	5	139917018	139917018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ANKHD1	NM_017747	exon31	c.G7072T	p.A2358S	GTCAGTGCCAGTC	.	137.0	67.0	137.0	0.0	.	233	.	.	Atlas-SNP
PCDHA10	56139	hgsc.bcm.edu	hg19	5	140237595	140237595	+	Silent	SNP	C	C	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	PCDHA10	NM_031859	exon1	c.C1962G	p.G654G	CCATGGCGAGCCG	.	115.0	23.0	82.0	0.0	.	358	.	.	Atlas-SNP
PCDHGB7	56099	hgsc.bcm.edu	hg19	5	140797663	140797663	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	PCDHGB7	NM_018927	exon1	c.G237T	p.A79A	AGACGCGCAGAGC	.	98.0	37.0	134.0	0.0	.	117	.	.	Atlas-SNP
SPINK5	11005	hgsc.bcm.edu	hg19	5	147450013	147450013	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	SPINK5	NM_001127699	exon3	c.T209G	p.L70R	TGATACTGTGAGT	.	301.0	19.0	326.0	0.0	.	245	.	.	Atlas-SNP
FOXI1	2299	hgsc.bcm.edu	hg19	5	169533520	169533520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	FOXI1	NM_012188	exon1	c.G559A	p.D187N	CCCCGCGACGAGG	.	101.0	31.0	96.0	0.0	.	70	.	.	Atlas-SNP
CDHR2	54825	hgsc.bcm.edu	hg19	5	176019770	176019770	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	CDHR2	NM_017675	exon31	c.C3781G	p.Q1261E	AACAGTCAGGAAA	.	112.0	54.0	103.0	0.0	.	152	.	.	Atlas-SNP
TMED9	54732	hgsc.bcm.edu	hg19	5	177019635	177019635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	TMED9	NM_017510	exon2	c.G244T	p.G82W	ACCCCGGGGCTTG	.	223.0	116.0	227.0	0.0	.	18	.	.	Atlas-SNP
N4BP3	23138	hgsc.bcm.edu	hg19	5	177547301	177547301	+	Silent	SNP	G	G	T	rs374439291		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	N4BP3	NM_015111	exon3	c.G453T	p.T151T	GCACACGCTGGCC	.	130.0	24.0	109.0	0.0	.	25	.	.	Atlas-SNP
CLK4	57396	hgsc.bcm.edu	hg19	5	178043910	178043910	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	CLK4	NM_020666	exon5	c.A515C	p.K172T	ACAACTTTGCCAA	.	277.0	58.0	280.0	0.0	.	103	.	.	Atlas-SNP
TRIM10	10107	hgsc.bcm.edu	hg19	6	30122220	30122220	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	TRIM10	NM_052828	exon7	c.C972A	p.L324L	GGACAAGAGGAGC	.	50.0	5.0	39.0	0.0	.	65	.	.	Atlas-SNP
ITPR3	3710	hgsc.bcm.edu	hg19	6	33652240	33652240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ITPR3	NM_002224	exon37	c.C5044T	p.R1682W	GGGGACCGGGTGA	.	138.0	11.0	94.0	0.0	.	409	.	.	Atlas-SNP
XPO5	57510	hgsc.bcm.edu	hg19	6	43492932	43492932	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	XPO5	NM_020750	exon29	c.A3087G	p.L1029L	TGTAATTAATAGC	.	72.0	12.0	70.0	0.0	.	79	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56342211	56342211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	DST	NM_015548	exon72	c.A13738G	p.I4580V	GGCAGATAGCCAA	.	99.0	15.0	106.0	0.0	.	1427	.	.	Atlas-SNP
ZNF451	26036	hgsc.bcm.edu	hg19	6	57012444	57012444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ZNF451	NM_001031623	exon10	c.C1561T	p.H521Y	CGGATTCACGGAG	.	144.0	25.0	96.0	0.0	.	181	.	.	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	hg19	6	72967920	72967920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	RIMS1	NM_014989	exon17	c.T2863C	p.S955P	TCAGTATCTCCTC	.	69.0	20.0	46.0	0.0	.	278	.	.	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75843108	75843108	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	COL12A1	NM_004370	exon34	c.A5695T	p.I1899F	TAAGAATGGCATA	.	145.0	41.0	125.0	0.0	.	385	.	.	Atlas-SNP
MYO6	4646	hgsc.bcm.edu	hg19	6	76596595	76596595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	MYO6	NM_004999	exon25	c.A2542G	p.K848E	CTGAAAAAACGAC	.	180.0	26.0	123.0	0.0	.	124	.	.	Atlas-SNP
MYO6	4646	hgsc.bcm.edu	hg19	6	76599977	76599977	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	MYO6	NM_004999	exon26	c.G2862A	p.R954R	GGAAAGGCGGATG	.	601.0	88.0	501.0	0.0	.	124	.	.	Atlas-SNP
MYCT1	80177	hgsc.bcm.edu	hg19	6	153019044	153019044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	MYCT1	NM_025107	exon1	c.A7G	p.T3A	ATGCGAACACAAG	.	147.0	23.0	146.0	0.0	.	48	.	.	Atlas-SNP
COL28A1	340267	hgsc.bcm.edu	hg19	7	7571326	7571326	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	COL28A1	NM_001037763	exon3	c.A334C	p.K112Q	GGTCCTTCCAGGA	.	207.0	44.0	225.0	0.0	.	113	.	.	Atlas-SNP
FAM126A	84668	hgsc.bcm.edu	hg19	7	22985357	22985357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	FAM126A	NM_032581	exon11	c.G1417A	p.G473R	CAGCCCCACAACC	.	111.0	30.0	113.0	0.0	.	53	.	.	Atlas-SNP
HNRNPA2B1	3181	hgsc.bcm.edu	hg19	7	26232908	26232908	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.,2	HNRNPA2B1	NM_031243	exon10	c.T963C	p.F321F	ACCACCAAAGTTT	.	154.0	49.0	67.0	0.0	.	70	.	.	Atlas-SNP
HOXA3	3200	hgsc.bcm.edu	hg19	7	27149809	27149809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	HOXA3	NM_030661	exon2	c.G451A	p.V151M	TGGCCACTGTGGG	.	116.0	15.0	78.0	0.0	.	62	.	.	Atlas-SNP
VPS41	27072	hgsc.bcm.edu	hg19	7	38783021	38783021	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	VPS41	NM_014396	exon24	c.A2103C	p.L701F	GGAATATAAAATC	.	162.0	15.0	84.0	0.0	.	102	.	.	Atlas-SNP
SEMA3E	9723	hgsc.bcm.edu	hg19	7	83037794	83037794	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	SEMA3E	NM_012431	exon6	c.T560A	p.L187X	GCAAACAATTCAC	.	125.0	23.0	104.0	0.0	.	125	.	.	Atlas-SNP
ASB4	51666	hgsc.bcm.edu	hg19	7	95125087	95125087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ASB4	NM_016116	exon2	c.T205C	p.Y69H	CCTAGCTATAAAT	.	115.0	19.0	109.0	0.0	.	52	.	.	Atlas-SNP
ACTL6B	51412	hgsc.bcm.edu	hg19	7	100246398	100246398	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ACTL6B	NM_016188	exon6	c.C516T	p.T172T	GGTGTGGGTGGCT	.	88.0	16.0	69.0	0.0	.	47	.	.	Atlas-SNP
ORC5	5001	hgsc.bcm.edu	hg19	7	103801580	103801580	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ORC5	NM_002553	exon12	c.A1089G	p.L363L	TATTGCTAATAAT	.	121.0	25.0	113.0	0.0	.	48	.	.	Atlas-SNP
CADPS2	93664	hgsc.bcm.edu	hg19	7	121985695	121985695	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	CADPS2	NM_001167940	exon28	c.T3557A	p.V1186D	TGCCGAACAAACA	.	56.0	11.0	63.0	0.0	.	116	.	.	Atlas-SNP
GRM8	2918	hgsc.bcm.edu	hg19	7	126883030	126883030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	GRM8	NM_000845	exon1	c.G229A	p.E77K	TGGCCTCCAGTCT	.	89.0	26.0	110.0	0.0	.	377	.	.	Atlas-SNP
MKLN1	4289	hgsc.bcm.edu	hg19	7	131113817	131113817	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	MKLN1	NM_013255	exon9	c.G873A	p.W291X	TGGCTGGGATGGA	.	104.0	28.0	103.0	0.0	.	67	.	.	Atlas-SNP
PODXL	5420	hgsc.bcm.edu	hg19	7	131241029	131241029	+	Silent	SNP	G	G	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	PODXL	NM_001018111	exon1	c.C90G	p.P30P	CTGGGAGGGCGAC	.	93.0	7.0	86.0	0.0	.	53	.	.	Atlas-SNP
DOCK5	80005	hgsc.bcm.edu	hg19	8	25154121	25154121	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	DOCK5	NM_024940	exon7	c.A563T	p.E188V	CCCATGAGGTGGC	.	83.0	19.0	127.0	0.0	.	167	.	.	Atlas-SNP
ADAM18	8749	hgsc.bcm.edu	hg19	8	39564351	39564351	+	Silent	SNP	A	A	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ADAM18	NM_014237	exon18	c.A1945C	p.R649R	GGACATAGACCTC	.	63.0	38.0	132.0	0.0	.	169	.	.	Atlas-SNP
VCPIP1	80124	hgsc.bcm.edu	hg19	8	67547274	67547274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	VCPIP1	NM_025054	exon3	c.G3131A	p.R1044K	CTAGCTCTTGGAT	.	73.0	20.0	88.0	0.0	.	110	.	.	Atlas-SNP
TERF1	7013	hgsc.bcm.edu	hg19	8	73958317	73958317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	TERF1	NM_017489	exon10	c.A1265G	p.D422G	TAAAAGACAGATG	.	456.0	220.0	287.0	0.0	.	48	.	.	Atlas-SNP
NBN	4683	hgsc.bcm.edu	hg19	8	90996753	90996753	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	NBN	NM_002485	exon1	c.G37T	p.G13X	CCTTACCTCCTGC	.	611.0	74.0	382.0	0.0	.	86	.	.	Atlas-SNP
RUNX1T1	862	hgsc.bcm.edu	hg19	8	93026961	93026961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.,3	RUNX1T1	NM_001198679	exon4	c.C491T	p.S164F	GAGGAGGAAGAAG	.	123.0	22.0	89.0	0.0	.	516	.	.	Atlas-SNP
RUNX1T1	862	hgsc.bcm.edu	hg19	8	93088272	93088272	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	RUNX1T1	NM_001198628	exon2	c.T9A	p.S3S	TTTGACAGATATC	.	79.0	9.0	43.0	0.0	.	516	.	.	Atlas-SNP
VPS13B	157680	hgsc.bcm.edu	hg19	8	100115264	100115264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	VPS13B	NM_152564	exon5	c.G496T	p.D166Y	GAAGATGATATCG	.	254.0	19.0	159.0	0.0	.	811	.	.	Atlas-SNP
VPS13B	157680	hgsc.bcm.edu	hg19	8	100874106	100874106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	VPS13B	NM_017890	exon58	c.G11222A	p.R3741Q	GGCGGCGGCAGCT	.	157.0	30.0	79.0	0.0	.	811	.	.	Atlas-SNP
SLC25A32	81034	hgsc.bcm.edu	hg19	8	104415433	104415433	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	SLC25A32	NM_030780	exon4	c.G511C	p.V171L	TTTTCACAAGTGT	.	152.0	14.0	85.0	0.0	.	36	.	.	Atlas-SNP
ANGPT1	284	hgsc.bcm.edu	hg19	8	108296966	108296966	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ANGPT1	NM_001146	exon7	c.C1149G	p.N383K	GGCTCGGTTCCCT	.	177.0	9.0	136.0	0.0	.	111	.	.	Atlas-SNP
EBAG9	9166	hgsc.bcm.edu	hg19	8	110567069	110567069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	EBAG9	NM_004215	exon4	c.C274A	p.P92T	CTGGAACCTGACT	.	178.0	52.0	117.0	0.0	.	23	.	.	Atlas-SNP
RLN1	6013	hgsc.bcm.edu	hg19	9	5335511	5335511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	RLN1	NM_006911	exon2	c.G298A	p.A100T	GGGCTGCCTTCAG	.	82.0	6.0	72.0	0.0	.	16	.	.	Atlas-SNP
KIAA2026	158358	hgsc.bcm.edu	hg19	9	5920853	5920853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	KIAA2026	NM_001017969	exon8	c.A5143G	p.T1715A	GTCCTGTTTTCAC	.	97.0	10.0	111.0	0.0	.	231	.	.	Atlas-SNP
TRPM6	140803	hgsc.bcm.edu	hg19	9	77386661	77386661	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	TRPM6	NM_017662	exon25	c.T3494C	p.V1165A	CAATTCACATCTT	.	25.0	16.0	55.0	0.0	.	377	.	.	Atlas-SNP
TEX10	54881	hgsc.bcm.edu	hg19	9	103092453	103092453	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	TEX10	NM_001161584	exon7	c.1260-2A>G	.	TGATGCTAGAAAC	.	37.0	15.0	76.0	0.0	.	99	.	.	Atlas-SNP
GOLGA1	2800	hgsc.bcm.edu	hg19	9	127685404	127685404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	GOLGA1	NM_002077	exon8	c.G531T	p.Q177H	CTGCTGCTGGAAC	.	20.0	9.0	34.0	0.0	.	60	.	.	Atlas-SNP
ADARB2	105	hgsc.bcm.edu	hg19	10	1313165	1313165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ADARB2	NM_018702	exon4	c.A1177G	p.I393V	TGACGATTCCTGC	.	75.0	18.0	67.0	0.0	.	95	.	.	Atlas-SNP
ASB13	79754	hgsc.bcm.edu	hg19	10	5683744	5683744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ASB13	NM_024701	exon5	c.A698G	p.E233G	TAGTACTCGAAGC	.	83.0	16.0	60.0	0.0	.	26	.	.	Atlas-SNP
ITGA8	8516	hgsc.bcm.edu	hg19	10	15573079	15573079	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ITGA8	NM_003638	exon28	c.G2952A	p.Q984Q	TGCTGGCTGATCT	.	188.0	31.0	200.0	0.0	.	230	.	.	Atlas-SNP
GAD2	2572	hgsc.bcm.edu	hg19	10	26513476	26513476	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	GAD2	NM_000818	exon6	c.A620T	p.Y207F	TCACCTATGAAAT	.	146.0	29.0	115.0	0.0	.	116	.	.	Atlas-SNP
CCDC6	8030	hgsc.bcm.edu	hg19	10	61566806	61566806	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	CCDC6	NM_005436	exon6	c.A878T	p.E293V	CGTTCCTCCTCCA	.	66.0	16.0	64.0	0.0	.	44	.	.	Atlas-SNP
CYP17A1	1586	hgsc.bcm.edu	hg19	10	104595084	104595084	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	CYP17A1	NM_000102	exon2	c.G363A	p.W121X	CAGCTGCCAGTGT	.	74.0	28.0	55.0	0.0	.	48	.	.	Atlas-SNP
PDCD11	22984	hgsc.bcm.edu	hg19	10	105165833	105165833	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	PDCD11	NM_014976	exon6	c.A656T	p.K219I	TGCTGAAAGCCCA	.	129.0	28.0	113.0	0.0	.	160	.	.	Atlas-SNP
NRAP	4892	hgsc.bcm.edu	hg19	10	115372164	115372164	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	NRAP	NM_001261463	exon30	c.C3327T	p.H1109H	CTTTGAGTGTTCA	.	114.0	26.0	98.0	0.0	.	208	.	.	Atlas-SNP
DMBT1	1755	hgsc.bcm.edu	hg19	10	124358530	124358530	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	DMBT1	NM_007329	exon26	c.A3197G	p.E1066G	GACACGAGTCTTA	.	100.0	24.0	100.0	0.0	.	677	.	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	hg19	11	1271184	1271184	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	MUC5B	NM_002458	exon31	c.G13074A	p.E4358E	TCCGGAGACCACC	.	70.0	21.0	129.0	0.0	.	473	.	.	Atlas-SNP
SOX6	55553	hgsc.bcm.edu	hg19	11	16077382	16077382	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	SOX6	NM_001145819	exon10	c.A1206G	p.P402P	TGGCTGTGGAGTT	.	29.0	14.0	68.0	0.0	.	149	.	.	Atlas-SNP
OR5T2	219464	hgsc.bcm.edu	hg19	11	55999752	55999752	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	OR5T2	NM_001004746	exon1	c.A910T	p.S304C	CATAGCTGGAACT	.	99.0	21.0	112.0	0.0	.	107	.	.	Atlas-SNP
OR8K1	390157	hgsc.bcm.edu	hg19	11	56114330	56114330	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	OR8K1	NM_001002907	exon1	c.T816C	p.H272H	CAGTCATACTTTG	.	81.0	16.0	101.0	0.0	.	93	.	.	Atlas-SNP
OR8U1	219417	hgsc.bcm.edu	hg19	11	56143186	56143186	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	OR8U1	NM_001005204	exon1	c.G87A	p.V29V	CTTTGTGCTATTC	.	74.0	12.0	67.0	0.0	.	59	.	.	Atlas-SNP
OR9Q1	219956	hgsc.bcm.edu	hg19	11	57946997	57946997	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	OR9Q1	NM_001005212	exon3	c.C81T	p.L27L	CCCTCTCTTCCTC	.	65.0	7.0	97.0	0.0	.	60	.	.	Atlas-SNP
CABP4	57010	hgsc.bcm.edu	hg19	11	67222916	67222916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	CABP4	NM_145200	exon1	c.G22A	p.G8R	GCAAGGGGGCAGC	.	48.0	6.0	67.0	0.0	.	33	.	.	Atlas-SNP
WNT11	7481	hgsc.bcm.edu	hg19	11	75905679	75905679	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	WNT11	NM_004626	exon3	c.A529T	p.K177X	TCACCTTCATAGG	.	94.0	24.0	94.0	0.0	.	44	.	.	Atlas-SNP
ALG9	79796	hgsc.bcm.edu	hg19	11	111742145	111742145	+	Missense_Mutation	SNP	C	C	G	rs200786242		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ALG9	NM_001077690	exon2	c.G61C	p.A21P	CCGGGGCGCGTAT	.	625.0	39.0	667.0	0.0	.	77	.	.	Atlas-SNP
PCSK7	9159	hgsc.bcm.edu	hg19	11	117100406	117100406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	PCSK7,NS,carcinoma,0,1	PCSK7	NM_004716	exon3	c.C155T	p.P52L	CAGCTCGGCCCCC	.	110.0	22.0	114.0	1.0	.	59	.	.	Atlas-SNP
OR6M1	390261	hgsc.bcm.edu	hg19	11	123676433	123676433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	OR6M1	NM_001005325	exon1	c.G625T	p.A209S	TGAATGCCAGGGA	.	66.0	7.0	87.0	0.0	.	60	.	.	Atlas-SNP
OR8G5	219865	hgsc.bcm.edu	hg19	11	124135129	124135129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	.	NM_001005198	exon1	c.T407C	p.L136P	CTCAGCTCTACTT	.	58.0	11.0	55.0	0.0	.	.	.	.	Atlas-SNP
PKP2	5318	hgsc.bcm.edu	hg19	12	33030888	33030888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	PKP2	NM_004572	exon3	c.C926T	p.A309V	TCCACGGCGACAC	.	33.0	9.0	48.0	0.0	.	110	.	.	Atlas-SNP
KIF21A	55605	hgsc.bcm.edu	hg19	12	39756972	39756972	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	KIF21A	NM_001173463	exon7	c.A947T	p.K316M	GCCCTCTTGCTCT	.	80.0	16.0	64.0	0.0	.	238	.	.	Atlas-SNP
PPM1H	57460	hgsc.bcm.edu	hg19	12	63328293	63328293	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	PPM1H	NM_020700	exon1	c.C224G	p.P75R	GCCCAGGGCAGCC	.	81.0	20.0	109.0	0.0	.	42	.	.	Atlas-SNP
UTP20	27340	hgsc.bcm.edu	hg19	12	101764273	101764273	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	UTP20	NM_014503	exon50	c.C6619G	p.L2207V	CAAGTTCTACTGG	.	87.0	11.0	73.0	0.0	.	222	.	.	Atlas-SNP
NOS1	4842	hgsc.bcm.edu	hg19	12	117768235	117768235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	NOS1	NM_000620	exon2	c.A640G	p.S214G	GAAGGCTCAGCAC	.	64.0	11.0	41.0	0.0	.	240	.	.	Atlas-SNP
MAB21L1	4081	hgsc.bcm.edu	hg19	13	36049724	36049724	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	MAB21L1	NM_005584	exon1	c.T552A	p.A184A	GTGGGCAGCACTC	.	48.0	11.0	68.0	0.0	.	52	.	.	Atlas-SNP
DCLK1	9201	hgsc.bcm.edu	hg19	13	36385016	36385016	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	DCLK1	NM_004734	exon12	c.T1644C	p.C548C	GGTGCCACAGACT	.	67.0	15.0	81.0	0.0	.	350	.	.	Atlas-SNP
ZC3H13	23091	hgsc.bcm.edu	hg19	13	46542149	46542149	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ZC3H13	NM_015070	exon15	c.A3811T	p.R1271X	GGCTTCTTGAATC	.	56.0	12.0	74.0	0.0	.	197	.	.	Atlas-SNP
SAMD4A	23034	hgsc.bcm.edu	hg19	14	55215638	55215638	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	SAMD4A,colon,carcinoma,0,2	SAMD4A	NM_015589	exon4	c.C1085G	p.A362G	TGGAGGCGCAGGT	.	65.0	26.0	82.0	0.0	.	68	.	.	Atlas-SNP
NUMB	8650	hgsc.bcm.edu	hg19	14	73750978	73750978	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	NUMB	NM_001005744	exon10	c.G760T	p.E254X	TCATCTCCAGAGA	.	114.0	53.0	159.0	0.0	.	56	.	.	Atlas-SNP
ASB2	51676	hgsc.bcm.edu	hg19	14	94423206	94423206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ASB2	NM_001202429	exon3	c.C217T	p.P73S	CAGGAGGTGCAGT	.	93.0	15.0	112.0	0.0	.	71	.	.	Atlas-SNP
C15orf53	400359	hgsc.bcm.edu	hg19	15	38990484	38990484	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	C15orf53	NM_207444	exon2	c.A278C	p.H93P	CAGCTCATGTCTT	.	83.0	19.0	110.0	0.0	.	12	.	.	Atlas-SNP
SPTBN5	51332	hgsc.bcm.edu	hg19	15	42150939	42150939	+	Missense_Mutation	SNP	G	G	A	rs372953121		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	SPTBN5	NM_016642	exon49	c.C7982T	p.A2661V	AGCCACGCAGCCA	.	65.0	15.0	58.0	0.0	.	171	.	.	Atlas-SNP
DMXL2	23312	hgsc.bcm.edu	hg19	15	51772972	51772972	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	DMXL2,bladder,carcinoma,0,1	DMXL2	NM_001174116	exon24	c.G6331C	p.D2111H	CCTGATCCAGCAG	.	164.0	13.0	101.0	1.0	.	262	.	.	Atlas-SNP
PSTPIP1	9051	hgsc.bcm.edu	hg19	15	77320208	77320208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	PSTPIP1	NM_003978	exon6	c.G370T	p.D124Y	GTCATGGACCGGG	.	352.0	121.0	282.0	0.0	.	50	.	.	Atlas-SNP
CTSH	1512	hgsc.bcm.edu	hg19	15	79223830	79223830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	CTSH	NM_004390	exon7	c.G511A	p.D171N	CGCAGTCCACCAG	.	73.0	27.0	80.0	0.0	.	23	.	.	Atlas-SNP
TMC3	342125	hgsc.bcm.edu	hg19	15	81628988	81628988	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	TMC3	NM_001080532	exon20	c.G2165C	p.R722T	TCTGATCTTGCCT	.	89.0	17.0	52.0	0.0	.	112	.	.	Atlas-SNP
AGBL1	123624	hgsc.bcm.edu	hg19	15	87097621	87097621	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	AGBL1	NM_152336	exon20	c.A2709G	p.A903A	GCTAGCACCAGCA	.	111.0	21.0	99.0	0.0	.	151	.	.	Atlas-SNP
DET1	55070	hgsc.bcm.edu	hg19	15	89074816	89074816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	DET1	NM_017996	exon3	c.G154A	p.V52M	GGAACACTCGGAC	.	182.0	17.0	134.0	0.0	.	55	.	.	Atlas-SNP
MFGE8	4240	hgsc.bcm.edu	hg19	15	89453089	89453089	+	Missense_Mutation	SNP	C	C	G	rs148213281		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	MFGE8	NM_001114614	exon2	c.G139C	p.G47R	CATCTCCTCGCAC	.	190.0	23.0	168.0	0.0	.	60	.	C|1.000;G|0.000	Atlas-SNP
BLM	641	hgsc.bcm.edu	hg19	15	91293034	91293034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	BLM	NM_000057	exon3	c.G536T	p.R179I	TTGTAAGAGTAAG	.	189.0	22.0	142.0	0.0	.	122	.	.	Atlas-SNP
N4BP1	9683	hgsc.bcm.edu	hg19	16	48576816	48576816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	N4BP1	NM_153029	exon7	c.G2690T	p.X897L	AATCTTCAATCCA	.	51.0	26.0	71.0	0.0	.	121	.	.	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	hg19	16	72991690	72991690	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ZFHX3	NM_006885	exon2	c.T2355C	p.N785N	ACTGATATTGGCT	.	38.0	13.0	35.0	0.0	.	404	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88502399	88502399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ZNF469	NM_001127464	exon2	c.G8437A	p.A2813T	CCTGATGCCTCTG	.	32.0	8.0	40.0	0.0	.	121	.	.	Atlas-SNP
RNMTL1	55178	hgsc.bcm.edu	hg19	17	695150	695150	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	RNMTL1	NM_018146	exon4	c.G1104A	p.Q368Q	CCTGCAGCTGGCC	.	94.0	5.0	62.0	0.0	.	25	.	.	Atlas-SNP
NUP88	4927	hgsc.bcm.edu	hg19	17	5312086	5312086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	NUP88	NM_002532	exon5	c.A824G	p.E275G	AAAGTCTCTCCAT	.	106.0	17.0	84.0	0.0	.	47	.	.	Atlas-SNP
ARHGEF15	22899	hgsc.bcm.edu	hg19	17	8215455	8215455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ARHGEF15	NM_025014	exon2	c.C98T	p.S33F	CCCAGTCCCCAGG	.	202.0	73.0	174.0	0.0	.	97	.	.	Atlas-SNP
NDEL1	81565	hgsc.bcm.edu	hg19	17	8363472	8363472	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	NDEL1	NM_001025579	exon8	c.A938T	p.D313V	TCTTCGACAAAGG	.	142.0	14.0	150.0	0.0	.	47	.	.	Atlas-SNP
PSME3	10197	hgsc.bcm.edu	hg19	17	40989684	40989684	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	PSME3	NM_001267045	exon7	c.A295T	p.R99W	AAGCGAAGGTTGG	.	149.0	25.0	127.0	0.0	.	11	.	.	Atlas-SNP
TBX4	9496	hgsc.bcm.edu	hg19	17	59560478	59560478	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	TBX4	NM_018488	exon8	c.T1239C	p.P413P	CCCACCTCCGCTG	.	91.0	27.0	62.0	0.0	.	69	.	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80043416	80043416	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	FASN	NM_004104	exon23	c.A4064T	p.D1355V	ACGATGTCCCCGA	.	251.0	32.0	198.0	0.0	.	154	.	.	Atlas-SNP
CD7	924	hgsc.bcm.edu	hg19	17	80274230	80274230	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	CD7	NM_006137	exon3	c.C453A	p.A151A	AGGGAGGGCAGAG	.	100.0	13.0	79.0	0.0	.	25	.	.	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	hg19	18	7080342	7080342	+	Missense_Mutation	SNP	C	C	T	rs375547281		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	LAMA1,colon,carcinoma,0,1	LAMA1	NM_005559	exon2	c.G176A	p.R59Q	ACGGGCCGACCTG	.	183.0	39.0	202.0	0.0	.	458	.	.	Atlas-SNP
ZCCHC2	54877	hgsc.bcm.edu	hg19	18	60242385	60242385	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ZCCHC2	NM_017742	exon13	c.A3071T	p.N1024I	GGACCAATGGAAA	.	71.0	20.0	79.0	0.0	.	64	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9076752	9076752	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	MUC16	NM_024690	exon3	c.A10694T	p.D3565V	GTGCTGTCCATGG	.	160.0	28.0	181.0	0.0	.	4315	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9083709	9083709	+	Silent	SNP	T	T	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	MUC16	NM_024690	exon1	c.A8106C	p.V2702V	GTTACTTACTGTC	.	87.0	4.0	59.0	0.0	.	4315	.	.	Atlas-SNP
PDE4C	5143	hgsc.bcm.edu	hg19	19	18327687	18327687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	PDE4C	NM_000923	exon13	c.T1349C	p.M450T	TTGTACATAAGCG	.	76.0	34.0	68.0	0.0	.	80	.	.	Atlas-SNP
COMP	1311	hgsc.bcm.edu	hg19	19	18896571	18896571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	COMP	NM_000095	exon14	c.C1580T	p.T527M	GTGAGCGTGACTT	.	52.0	5.0	45.0	0.0	.	62	.	.	Atlas-SNP
C19orf55	148137	hgsc.bcm.edu	hg19	19	36256011	36256011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	C19orf55	NM_001039887	exon7	c.G703A	p.G235S	TCTGATGGCCTCT	.	46.0	12.0	56.0	0.0	.	39	.	.	Atlas-SNP
WDR62	284403	hgsc.bcm.edu	hg19	19	36592199	36592199	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	WDR62	NM_173636	exon24	c.A2951T	p.K984M	GCCCAAAGGACCA	.	194.0	44.0	161.0	0.0	.	102	.	.	Atlas-SNP
ZNF585B	92285	hgsc.bcm.edu	hg19	19	37678065	37678065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ZNF585B	NM_152279	exon5	c.C374T	p.S125F	TCCCCAGAATAAA	.	104.0	35.0	87.0	0.0	.	91	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38377640	38377640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	WDR87	NM_031951	exon6	c.A6554G	p.E2185G	TCTTCTTCTATTC	.	99.0	22.0	89.0	0.0	.	191	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38380578	38380578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	WDR87	NM_031951	exon6	c.A3616G	p.T1206A	GTGTAGTTTCCTC	.	81.0	12.0	94.0	0.0	.	191	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	39075613	39075613	+	Missense_Mutation	SNP	C	C	T	rs118192150	bycluster	TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	RYR1	NM_000540	exon102	c.C14677T	p.R4893W	GGTGTCCGGGCTG	.	155.0	55.0	129.0	0.0	.	708	.	.	Atlas-SNP
GMFG	9535	hgsc.bcm.edu	hg19	19	39819668	39819668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	GMFG	NM_004877	exon6	c.G329A	p.R110K	ACCAGCCTGTTTT	.	47.0	9.0	55.0	0.0	.	16	.	.	Atlas-SNP
ZNF526	116115	hgsc.bcm.edu	hg19	19	42729783	42729783	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ZNF526	NM_133444	exon3	c.G1228T	p.A410S	ACTCACGCCGGCA	.	153.0	35.0	145.0	0.0	.	51	.	.	Atlas-SNP
ARHGAP35	2909	hgsc.bcm.edu	hg19	19	47423310	47423310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	.	NM_004491	exon1	c.A1378G	p.M460V	TTTATTATGAATG	.	118.0	18.0	102.0	0.0	.	.	.	.	Atlas-SNP
EHD2	30846	hgsc.bcm.edu	hg19	19	48239730	48239730	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	EHD2,NS,carcinoma,0,1	EHD2	NM_014601	exon5	c.G1020A	p.A340A	CTTTGCGAAGATT	.	124.0	19.0	117.0	0.0	.	59	.	.	Atlas-SNP
LILRB5	10990	hgsc.bcm.edu	hg19	19	54759241	54759241	+	Missense_Mutation	SNP	C	C	G	rs146167320	bycluster	TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	LILRB5	NM_001081442	exon5	c.G860C	p.R287P	TGGGAGCGGCTCA	.	149.0	7.0	149.0	0.0	.	176	.	C|0.999;G|0.001	Atlas-SNP
LILRB1	10859	hgsc.bcm.edu	hg19	19	55144168	55144168	+	Silent	SNP	C	C	T	rs377724258		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	LILRB1	NM_001081637	exon6	c.C915T	p.S305S	CTCCTCCGAGTGG	.	98.0	7.0	103.0	0.0	.	140	.	.	Atlas-SNP
PPP6R1	22870	hgsc.bcm.edu	hg19	19	55743228	55743228	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	PPP6R1	NM_014931	exon19	c.C2248G	p.Q750E	GGCCCTGGGGCAC	.	66.0	22.0	49.0	0.0	.	63	.	.	Atlas-SNP
TMC2	117532	hgsc.bcm.edu	hg19	20	2593864	2593864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	TMC2	NM_080751	exon14	c.G1768A	p.D590N	GTGTCTGACATGC	.	123.0	42.0	83.0	0.0	.	121	.	.	Atlas-SNP
FERMT1	55612	hgsc.bcm.edu	hg19	20	6100146	6100146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	FERMT1	NM_017671	exon2	c.A56G	p.D19G	GGATGGTCAACGC	.	136.0	24.0	96.0	0.0	.	106	.	.	Atlas-SNP
ID1	3397	hgsc.bcm.edu	hg19	20	30193892	30193892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ID1	NM_002165	exon2	c.C463A	p.R155S	TTGTGTCGCTGAA	.	66.0	18.0	35.0	0.0	.	12	.	.	Atlas-SNP
PLCG1	5335	hgsc.bcm.edu	hg19	20	39802780	39802780	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	PLCG1	NM_002660	exon31	c.T3662G	p.L1221R	GTGACCTCAGTCC	.	64.0	29.0	39.0	0.0	.	111	.	.	Atlas-SNP
TPTE	7179	hgsc.bcm.edu	hg19	21	10933910	10933910	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	TPTE	NM_199261	exon17	c.T969G	p.N323K	CCACTCATTTACT	.	1005.0	73.0	946.0	0.0	.	513	.	.	Atlas-SNP
TMPRSS15	5651	hgsc.bcm.edu	hg19	21	19715849	19715849	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	TMPRSS15	NM_002772	exon12	c.A1402T	p.T468S	TTAGGGTTACTTG	.	228.0	77.0	182.0	0.0	.	189	.	.	Atlas-SNP
NCAM2	4685	hgsc.bcm.edu	hg19	21	22906918	22906918	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	NCAM2	NM_004540	exon17	c.T2343A	p.N781K	TACTAATCACGAA	.	127.0	52.0	147.0	0.0	.	220	.	.	Atlas-SNP
HUNK	30811	hgsc.bcm.edu	hg19	21	33370991	33370991	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	HUNK	NM_014586	exon11	c.A1639T	p.I547F	ACTGGCATCCCCC	.	83.0	27.0	96.0	0.0	.	74	.	.	Atlas-SNP
DYRK1A	1859	hgsc.bcm.edu	hg19	21	38850602	38850602	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	DYRK1A	NM_001396	exon3	c.G327C	p.E109D	TAATGAGGTAAGA	.	71.0	13.0	94.0	0.0	.	85	.	.	Atlas-SNP
HSF2BP	11077	hgsc.bcm.edu	hg19	21	45076519	45076519	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	HSF2BP	NM_007031	exon3	c.C136T	p.L46L	CATTTAGTATTCT	.	86.0	29.0	102.0	0.0	.	28	.	.	Atlas-SNP
KRTAP10-9	386676	hgsc.bcm.edu	hg19	21	46047944	46047944	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	KRTAP10-9	NM_198690	exon1	c.T856A	p.S286T	TTCTCCTCAGGCC	.	50.0	9.0	55.0	0.0	.	24	.	.	Atlas-SNP
SPATC1L	84221	hgsc.bcm.edu	hg19	21	47602716	47602716	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	.	NM_001142854	exon2	c.C15T	p.G5G	CAGCTCGCCGCCT	.	48.0	8.0	71.0	0.0	.	.	.	.	Atlas-SNP
GAB4	128954	hgsc.bcm.edu	hg19	22	17472883	17472883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	GAB4	NM_001037814	exon2	c.A358G	p.M120V	CAAACATATAGCC	.	110.0	19.0	112.0	0.0	.	95	.	.	Atlas-SNP
PES1	23481	hgsc.bcm.edu	hg19	22	30977601	30977601	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	PES1	NM_014303	exon7	c.G661C	p.A221P	AGGTGGCCATGAC	.	82.0	16.0	75.0	0.0	.	55	.	.	Atlas-SNP
TAB3	257397	hgsc.bcm.edu	hg19	X	30871043	30871043	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	TAB3	NM_152787	exon7	c.A1562G	p.H521R	CGTTGATGTAACA	.	15.0	8.0	17.0	0.0	.	82	.	.	Atlas-SNP
CHM	1121	hgsc.bcm.edu	hg19	X	85218702	85218702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	CHM	NM_000390	exon5	c.G670T	p.G224C	TCCTGCCTTCTTT	.	31.0	12.0	33.0	0.0	.	57	.	.	Atlas-SNP
CETN2	1069	hgsc.bcm.edu	hg19	X	151997125	151997125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	CETN2	NM_004344	exon4	c.G385A	p.V129M	TGGCCACGCGTTT	.	107.0	36.0	105.0	0.0	.	23	.	.	Atlas-SNP
ND1	10625	hgsc.bcm.edu	hg19	MT	3427	3427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	.	ENST00000361390	exon1	c.G121A	p.G41S	GTTGTAGGCCCCT	.	21.0	21.0	35.0	0.0	.	.	.	.	Atlas-SNP
SIK2	23235	hgsc.bcm.edu	hg19	11	111591239	111591239	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	SIK2	NM_015191	exon11	c.1532delA	p.D511fs	.	.	56.0	11.0	108.0	0.0	.	89	.	.	Atlas-INDEL
KIAA2026	158358	hgsc.bcm.edu	hg19	9	5968486	5968487	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	KIAA2026	NM_001017969	exon3	c.1745_1746insA	p.T582fs	.	.	62.0	22.0	57.0	0.0	.	231	.	.	Atlas-INDEL
AXIN1	8312	hgsc.bcm.edu	hg19	16	348025	348025	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	AXIN1	NM_003502	exon6	c.1482delG	p.P494fs	.	.	31.0	14.0	35.0	0.0	.	290	.	.	Atlas-INDEL
KRTAP25-1	100131902	hgsc.bcm.edu	hg19	21	31661779	31661780	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.,1	KRTAP25-1	NM_001128598	exon1	c.30_31insT	p.F10fs	.	.	109.0	17.0	127.0	0.0	.	13	.	.	Atlas-INDEL
ZCCHC2	54877	hgsc.bcm.edu	hg19	18	60217605	60217618	+	Frame_Shift_Del	DEL	ACTTTTGACAAGAC	ACTTTTGACAAGAC	-	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	ACTTTTGACAAGAC	ACTTTTGACAAGAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	ZCCHC2	NM_017742	exon5	c.1224_1237del	p.408_413del	.	.	72.0	12.0	117.0	0.0	.	64	.	.	Atlas-INDEL
MAML2	84441	hgsc.bcm.edu	hg19	11	95712390	95712391	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	MAML2	NM_032427	exon5	c.3193_3194del	p.1065_1065del	.	.	65.0	17.0	64.0	0.0	.	94	.	.	Atlas-INDEL
RYR3	6263	hgsc.bcm.edu	hg19	15	33835899	33835902	+	Frame_Shift_Del	DEL	GAAT	GAAT	-	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	GAAT	GAAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	RYR3	NM_001243996	exon8	c.722_725del	p.241_242del	.	.	92.0	25.0	114.0	0.0	.	760	.	.	Atlas-INDEL
SETD2	29072	hgsc.bcm.edu	hg19	3	47161750	47161751	+	Frame_Shift_Ins	INS	-	-	CCATT	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	SETD2	NM_014159	exon3	c.4376_4377insAATGG	p.R1459fs	.	.	81.0	18.0	88.0	0.0	.	721	.	.	Atlas-INDEL
GP1BA	2811	hgsc.bcm.edu	hg19	17	4837179	4837190	+	In_Frame_Del	DEL	CCTCAGAGCCCG	CCTCAGAGCCCG	-	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	CCTCAGAGCCCG	CCTCAGAGCCCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	GP1BA	NM_000173	exon2	c.1279_1290del	p.427_430del	.	.	42.0	15.0	36.0	0.0	.	53	.	.	Atlas-INDEL
PNN	5411	hgsc.bcm.edu	hg19	14	39650465	39650470	+	In_Frame_Del	DEL	CAGGAG	CAGGAG	-	novel		TCGA-DD-AADO-01A-11D-A40R-10	TCGA-DD-AADO-10A-01D-A40U-10	CAGGAG	CAGGAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0a3f5ccf-b8ce-4d56-af78-c4f04b7119f1	5ca67e3d-63d5-48e4-85b6-e7df2f4497ed	.	PNN	NM_002687	exon9	c.1551_1556del	p.517_519del	.	.	105.0	21.0	113.0	0.0	.	67	.	.	Atlas-INDEL
