Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
MIB2	142678	hgsc.bcm.edu	hg19	1	1562694	1562694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	MIB2	NM_080875	exon12	c.G1738T	p.G580C	AACCAAGGCAGGA	.	182.0	101.0	355.0	0.0	.	62	.	.	Atlas-SNP
ZNF644	84146	hgsc.bcm.edu	hg19	1	91382375	91382375	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	ZNF644	NM_201269	exon6	c.A3964T	p.M1322L	CGGCCATTAGTAG	.	144.0	63.0	168.0	0.0	.	120	.	.	Atlas-SNP
ARHGAP29	9411	hgsc.bcm.edu	hg19	1	94685889	94685889	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	ARHGAP29	NM_004815	exon3	c.A265G	p.I89V	TCATTATAGACTT	.	56.0	21.0	98.0	0.0	.	132	.	.	Atlas-SNP
YY1AP1	55249	hgsc.bcm.edu	hg19	1	155630103	155630103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	YY1AP1_ENST00000368339,right_upper_lobe,carcinoma,0,2	YY1AP1	NM_001198903	exon10	c.G2012A	p.R671K	CCCCTTCTTTTTG	.	231.0	69.0	222.0	2.0	.	104	.	.	Atlas-SNP
PRRX1	5396	hgsc.bcm.edu	hg19	1	170633528	170633528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	PRRX1	NM_006902	exon1	c.G169A	p.V57M	GAGAACGTGGGCG	.	390.0	109.0	369.0	1.0	.	81	.	.	Atlas-SNP
FAM5B	57795	hgsc.bcm.edu	hg19	1	177250089	177250089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	FAM5B	NM_021165	exon8	c.T1777C	p.F593L	AACCCCTTTGGGG	.	126.0	35.0	76.0	0.0	.	191	.	.	Atlas-SNP
ANGPTL1	9068	hgsc.bcm.edu	hg19	1	178834353	178834353	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	ANGPTL1	NM_004673	exon3	c.A559C	p.N187H	GGTTATTGACAAG	.	168.0	89.0	148.0	0.0	.	41	.	.	Atlas-SNP
PLA2G4A	5321	hgsc.bcm.edu	hg19	1	186880516	186880516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	PLA2G4A	NM_024420	exon7	c.C553T	p.R185C	TCTGCACGTGATG	.	92.0	38.0	99.0	0.0	.	125	.	.	Atlas-SNP
IARS2	55699	hgsc.bcm.edu	hg19	1	220273891	220273891	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	IARS2	NM_018060	exon3	c.G450T	p.V150V	TTTTGTGCCCGGC	.	340.0	179.0	353.0	0.0	.	106	.	.	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	hg19	1	240370098	240370098	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	FMN2	NM_020066	exon5	c.1987-1G>A	.	CCTTCAGGAAGTT	.	318.0	177.0	263.0	0.0	.	451	.	.	Atlas-SNP
CHML	1122	hgsc.bcm.edu	hg19	1	241797784	241797784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	CHML	NM_001821	exon1	c.A1285G	p.I429V	CATTTATTCTTTG	.	77.0	19.0	61.0	0.0	.	82	.	.	Atlas-SNP
KIDINS220	57498	hgsc.bcm.edu	hg19	2	8953428	8953428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	KIDINS220	NM_020738	exon5	c.G344A	p.G115D	GTACGGCCTTTGT	.	266.0	100.0	279.0	0.0	.	136	.	.	Atlas-SNP
NBAS	51594	hgsc.bcm.edu	hg19	2	15319165	15319165	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	NBAS,NS,carcinoma,0,1	NBAS	NM_015909	exon51	c.C6787T	p.R2263X	CATCTCGGCTCTC	.	404.0	148.0	449.0	1.0	.	246	.	.	Atlas-SNP
MYCN	4613	hgsc.bcm.edu	hg19	2	16082485	16082485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	MYCN	NM_005378	exon2	c.G299T	p.G100V	GCCTGGGGGGACT	.	777.0	288.0	1018.0	0.0	.	63	.	.	Atlas-SNP
LTBP1	4052	hgsc.bcm.edu	hg19	2	33588558	33588558	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	LTBP1	NM_206943	exon29	c.T4372G	p.Y1458D	ACGTACTATGATC	.	71.0	36.0	94.0	0.0	.	317	.	.	Atlas-SNP
HK2	3099	hgsc.bcm.edu	hg19	2	75107408	75107408	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	HK2	NM_000189	exon10	c.C1282G	p.H428D	CGTCTACATAAGA	.	96.0	42.0	118.0	0.0	.	85	.	.	Atlas-SNP
RBMS3	27303	hgsc.bcm.edu	hg19	3	29804446	29804446	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	RBMS3	NM_001003793	exon6	c.T603C	p.N201N	TTTTAATGGAAAA	.	303.0	102.0	378.0	0.0	.	62	.	.	Atlas-SNP
STT3B	201595	hgsc.bcm.edu	hg19	3	31658480	31658480	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	STT3B	NM_178862	exon7	c.A1036C	p.K346Q	TTAACAAAACAAG	.	97.0	33.0	119.0	0.0	.	52	.	.	Atlas-SNP
ATRIP	84126	hgsc.bcm.edu	hg19	3	48501904	48501904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	ATRIP	NM_130384	exon8	c.A1451G	p.H484R	TTCAGCACCTGGT	.	71.0	25.0	98.0	0.0	.	41	.	.	Atlas-SNP
QRICH1	54870	hgsc.bcm.edu	hg19	3	49070130	49070130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	QRICH1	NM_198880	exon8	c.C1972T	p.P658S	TAGAGGGGTTCTT	.	80.0	31.0	98.0	0.0	.	48	.	.	Atlas-SNP
PBRM1	55193	hgsc.bcm.edu	hg19	3	52595942	52595942	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	PBRM1	NM_018313	exon26	c.T3973G	p.S1325A	GTTTGGAGCCTTC	.	139.0	54.0	168.0	0.0	.	1252	.	.	Atlas-SNP
EIF2A	83939	hgsc.bcm.edu	hg19	3	150290287	150290287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	EIF2A	NM_032025	exon10	c.A1354G	p.R452G	GCTTTAAGAAATA	.	87.0	34.0	118.0	0.0	.	59	.	.	Atlas-SNP
PDE6B	5158	hgsc.bcm.edu	hg19	4	651192	651192	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	PDE6B	NM_001145291	exon10	c.A1310T	p.K437M	ACGACAAGATGAA	.	303.0	102.0	357.0	1.0	.	80	.	.	Atlas-SNP
GABRG1	2565	hgsc.bcm.edu	hg19	4	46060543	46060543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	GABRG1	NM_173536	exon6	c.T722C	p.V241A	AACCCTACAAATG	.	145.0	61.0	223.0	0.0	.	172	.	.	Atlas-SNP
UBA6	55236	hgsc.bcm.edu	hg19	4	68528881	68528881	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	UBA6	NM_018227	exon12	c.A1013C	p.K338T	CTGTATTTCTCCT	.	163.0	95.0	310.0	0.0	.	98	.	.	Atlas-SNP
MGST2	4258	hgsc.bcm.edu	hg19	4	140616397	140616397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	MGST2	NM_001204366	exon3	c.A205G	p.M69V	TTGTGGATGGCTG	.	51.0	32.0	98.0	0.0	.	7	.	.	Atlas-SNP
FYB	2533	hgsc.bcm.edu	hg19	5	39126206	39126206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	FYB_ENST00000540520,NS,carcinoma,0,2	FYB	NM_001243093	exon12	c.A1969G	p.T657A	ACCACGTATTACT	.	88.0	21.0	104.0	0.0	.	354	.	.	Atlas-SNP
ARAP3	64411	hgsc.bcm.edu	hg19	5	141038047	141038047	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	ARAP3	NM_022481	exon26	c.3412-1G>A	.	GGACACCTGGGGT	.	109.0	30.0	130.0	0.0	.	139	.	.	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150887158	150887158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	FAT2	NM_001447	exon22	c.C12074T	p.A4025V	CCCCTCGCCTCCA	.	36.0	10.0	33.0	0.0	.	465	.	.	Atlas-SNP
MAPK9	5601	hgsc.bcm.edu	hg19	5	179707453	179707453	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	MAPK9	NM_002752	exon2	c.C109G	p.Q37E	TCCCTTGGGCCCC	.	115.0	33.0	154.0	0.0	.	173	.	.	Atlas-SNP
MYLK4	340156	hgsc.bcm.edu	hg19	6	2685717	2685717	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	MYLK4	NM_001012418	exon5	c.G435A	p.K145K	CTGTACCTTGTCC	.	98.0	26.0	95.0	0.0	.	74	.	.	Atlas-SNP
CSNK2B	1460	hgsc.bcm.edu	hg19	6	31635683	31635683	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	CSNK2B	NM_001320	exon3	c.T111C	p.T37T	TCTTACTGGACTC	.	82.0	30.0	70.0	0.0	.	15	.	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38897346	38897346	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	DNAH8	NM_001206927	exon75	c.C11178A	p.G3726G	CTTGGGCCGACCC	.	65.0	28.0	94.0	0.0	.	1239	.	.	Atlas-SNP
ABCC10	89845	hgsc.bcm.edu	hg19	6	43400067	43400067	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	ABCC10	NM_001198934	exon3	c.C349G	p.L117V	CACAGCCTGGCCC	.	34.0	5.0	38.0	0.0	.	118	.	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	hg19	6	51524481	51524481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	PKHD1	NM_138694	exon61	c.G10443T	p.L3481F	AAAGCGCAAAACT	.	109.0	38.0	123.0	0.0	.	927	.	.	Atlas-SNP
C6orf170	221322	hgsc.bcm.edu	hg19	6	121452855	121452855	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	C6orf170	NM_152730	exon25	c.T2817G	p.D939E	TTGTTTATCAGAT	.	23.0	15.0	45.0	0.0	.	146	.	.	Atlas-SNP
TRDN	10345	hgsc.bcm.edu	hg19	6	123658791	123658791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	TRDN	NM_006073	exon22	c.A1393G	p.K465E	AAGTCTTCCCAGA	.	103.0	6.0	187.0	0.0	.	88	.	.	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	hg19	6	129704303	129704303	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	LAMA2	NM_000426	exon35	c.C4996T	p.Q1666X	ACCGGACAGGATG	.	66.0	38.0	166.0	0.0	.	481	.	.	Atlas-SNP
SAMD5	389432	hgsc.bcm.edu	hg19	6	147830394	147830394	+	Silent	SNP	T	T	C	rs370342734	alternate_allele	TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	SAMD5	NM_001030060	exon1	c.T330C	p.S110S	GGACTCTCGCGGC	.	41.0	13.0	70.0	0.0	.	4	.	.	Atlas-SNP
RUNDC3B	154661	hgsc.bcm.edu	hg19	7	87459284	87459284	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	RUNDC3B	NM_138290	exon12	c.C1361G	p.S454C	TAAAATCTAATGA	.	117.0	39.0	123.0	0.0	.	63	.	.	Atlas-SNP
PTPRZ1	5803	hgsc.bcm.edu	hg19	7	121653745	121653745	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	PTPRZ1	NM_002851	exon12	c.A4645C	p.S1549R	GAAGAAAGTGGAT	.	145.0	48.0	189.0	0.0	.	605	.	.	Atlas-SNP
EGR3	1960	hgsc.bcm.edu	hg19	8	22548606	22548606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	EGR3	NM_004430	exon2	c.G544T	p.A182S	CCAACGCCGGCTT	.	77.0	47.0	144.0	0.0	.	33	.	.	Atlas-SNP
SCARA5	286133	hgsc.bcm.edu	hg19	8	27824054	27824054	+	Missense_Mutation	SNP	A	A	G	rs111460095	alternate_allele	TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	SCARA5	NM_173833	exon3	c.T118C	p.C40R	TGTGACATGGACC	.	138.0	27.0	249.0	0.0	.	53	.	A|0.500;C|0.500	Atlas-SNP
KAT6A	7994	hgsc.bcm.edu	hg19	8	41906233	41906233	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	.	NM_001099412	exon3	c.A263T	p.H88L	TTTCCATGGTTCC	.	79.0	39.0	135.0	0.0	.	.	.	.	Atlas-SNP
MYBL1	4603	hgsc.bcm.edu	hg19	8	67488316	67488316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	MYBL1	NM_001080416	exon10	c.G1396T	p.G466C	ATGAGCCATCCCT	.	199.0	40.0	170.0	0.0	.	73	.	.	Atlas-SNP
KLF10	7071	hgsc.bcm.edu	hg19	8	103664417	103664417	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	KLF10	NM_005655	exon2	c.C245G	p.P82R	AAATCAGGTGTTC	.	118.0	71.0	94.0	0.0	.	44	.	.	Atlas-SNP
DGAT1	8694	hgsc.bcm.edu	hg19	8	145540696	145540696	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	DGAT1	NM_012079	exon15	c.T1237G	p.F413V	GGAAGAAGGCCGA	.	85.0	43.0	82.0	0.0	.	26	.	.	Atlas-SNP
ZNF7	7553	hgsc.bcm.edu	hg19	8	146054920	146054920	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	ZNF7	NM_003416	exon3	c.C61T	p.L21L	CAGTGTCTGGACC	.	169.0	45.0	156.0	0.0	.	62	.	.	Atlas-SNP
DENND4C	55667	hgsc.bcm.edu	hg19	9	19372063	19372063	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	DENND4C	NM_017925	exon32	c.A5622G	p.A1874A	AATTGCATACAAT	.	77.0	41.0	148.0	0.0	.	120	.	.	Atlas-SNP
TAF1L	138474	hgsc.bcm.edu	hg19	9	32631818	32631818	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	TAF1L	NM_153809	exon1	c.A3760C	p.K1254Q	TCCGCTTAAGCCG	.	262.0	97.0	311.0	1.0	.	382	.	.	Atlas-SNP
TAF1L	138474	hgsc.bcm.edu	hg19	9	32631838	32631838	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	TAF1L	NM_153809	exon1	c.A3740T	p.Q1247L	TGCTCTTGAATCC	.	275.0	98.0	320.0	1.0	.	382	.	.	Atlas-SNP
ISCA1	81689	hgsc.bcm.edu	hg19	9	88889128	88889128	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	ISCA1	NM_030940	exon2	c.A111G	p.Q37Q	AAGAAGTTGTTTT	.	59.0	30.0	82.0	0.0	.	10	.	.	Atlas-SNP
GLE1	2733	hgsc.bcm.edu	hg19	9	131289570	131289570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	GLE1	NM_001499	exon8	c.G1242T	p.Q414H	CAGTCAGGTAGGG	.	51.0	4.0	52.0	0.0	.	42	.	.	Atlas-SNP
PPP1R26	9858	hgsc.bcm.edu	hg19	9	138376480	138376480	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	.	NM_014811	exon4	c.T124A	p.S42T	AGCGCGTCGGTGA	.	48.0	16.0	66.0	0.0	.	.	.	.	Atlas-SNP
PLXDC2	84898	hgsc.bcm.edu	hg19	10	20290907	20290907	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	PLXDC2	NM_032812	exon2	c.C316T	p.Q106X	AACACTCAGATCG	.	151.0	53.0	211.0	0.0	.	108	.	.	Atlas-SNP
ARMC3	219681	hgsc.bcm.edu	hg19	10	23235105	23235105	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	ARMC3	NM_173081	exon3	c.A81T	p.A27A	AAAAGCAGCAACT	.	83.0	24.0	91.0	0.0	.	102	.	.	Atlas-SNP
ZNF33A	7581	hgsc.bcm.edu	hg19	10	38344426	38344426	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	ZNF33A	NM_006954	exon5	c.A1374G	p.V458V	TAAAGTACACCAG	.	97.0	32.0	137.0	0.0	.	103	.	.	Atlas-SNP
TNKS2	80351	hgsc.bcm.edu	hg19	10	93619284	93619284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	TNKS2	NM_025235	exon25	c.A3160G	p.M1054V	GGTGGTATGTTTG	.	94.0	30.0	121.0	0.0	.	103	.	.	Atlas-SNP
BTRC	8945	hgsc.bcm.edu	hg19	10	103292148	103292148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	BTRC	NM_033637	exon8	c.G937A	p.D313N	TATGATGATCAGA	.	46.0	11.0	84.0	0.0	.	64	.	.	Atlas-SNP
F2	2147	hgsc.bcm.edu	hg19	11	46744939	46744939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	F2	NM_000506	exon6	c.T430C	p.S144P	ATCAACTCCACTA	.	117.0	42.0	124.0	0.0	.	75	.	.	Atlas-SNP
OR5D14	219436	hgsc.bcm.edu	hg19	11	55563878	55563878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	OR5D14	NM_001004735	exon1	c.G847T	p.V283F	ACAGTTGTCAACC	.	66.0	20.0	71.0	0.0	.	116	.	.	Atlas-SNP
OR5I1	10798	hgsc.bcm.edu	hg19	11	55703216	55703216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	OR5I1	NM_006637	exon1	c.T661C	p.F221L	TGAAAAAGTAGGA	.	119.0	37.0	136.0	0.0	.	110	.	.	Atlas-SNP
GANAB	23193	hgsc.bcm.edu	hg19	11	62394101	62394101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	GANAB	NM_198335	exon22	c.G2519T	p.R840L	GAAGACCGCCGCA	.	80.0	4.0	98.0	0.0	.	110	.	.	Atlas-SNP
ATM	472	hgsc.bcm.edu	hg19	11	108205694	108205694	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	ATM	NM_000051	exon55	c.8011-2A>T	.	TTTATTAGGTGGA	.	76.0	42.0	168.0	0.0	.	1657	.	.	Atlas-SNP
CD163L1	283316	hgsc.bcm.edu	hg19	12	7548802	7548802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	CD163L1,colon,carcinoma,0,1	CD163L1	NM_174941	exon8	c.C1939A	p.L647I	CATCGAGCCAAAT	.	117.0	38.0	159.0	0.0	.	238	.	.	Atlas-SNP
BAZ2A	11176	hgsc.bcm.edu	hg19	12	57009334	57009334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	BAZ2A	NM_013449	exon3	c.C200T	p.S67L	ATCCCTGAAGTAG	.	59.0	29.0	53.0	0.0	.	263	.	.	Atlas-SNP
RDH16	8608	hgsc.bcm.edu	hg19	12	57348907	57348907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	RDH16	NM_003708	exon2	c.A355G	p.T119A	GAGCCGTGGGCAA	.	101.0	40.0	116.0	0.0	.	33	.	.	Atlas-SNP
TAOK3	51347	hgsc.bcm.edu	hg19	12	118588895	118588895	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	TAOK3	NM_016281	exon21	c.A2604T	p.Q868H	TCGCTCTTGCCTT	.	76.0	33.0	95.0	0.0	.	151	.	.	Atlas-SNP
TAOK3	51347	hgsc.bcm.edu	hg19	12	118588900	118588900	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	TAOK3	NM_016281	exon21	c.A2599T	p.R867W	CTTGCCTTTCCAA	.	76.0	34.0	95.0	0.0	.	151	.	.	Atlas-SNP
ZNF605	100289635	hgsc.bcm.edu	hg19	12	133502153	133502153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	ZNF605	NM_001164715	exon5	c.A1825G	p.I609V	GATGTATAATCAG	.	80.0	34.0	87.0	0.0	.	50	.	.	Atlas-SNP
PCDH8	5100	hgsc.bcm.edu	hg19	13	53422433	53422433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	PCDH8	NM_032949	exon1	c.G139A	p.G47R	GGGTCCCGATGAC	.	51.0	26.0	54.0	0.0	.	95	.	.	Atlas-SNP
REC8	9985	hgsc.bcm.edu	hg19	14	24646411	24646411	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.,1	REC8	NM_001048205	exon8	c.A686C	p.E229A	AGGAAGAAGCTAT	.	86.0	8.0	64.0	0.0	.	47	.	.	Atlas-SNP
AKAP6	9472	hgsc.bcm.edu	hg19	14	33290708	33290708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	AKAP6	NM_004274	exon13	c.G3689T	p.S1230I	TAATTAGTTTGAA	.	129.0	34.0	164.0	0.0	.	308	.	.	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	hg19	14	45658071	45658071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	FANCM	NM_020937	exon20	c.G4846A	p.G1616S	TGCAAAGGCCAAT	.	174.0	59.0	202.0	0.0	.	225	.	.	Atlas-SNP
VSX2	338917	hgsc.bcm.edu	hg19	14	74727375	74727375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	VSX2	NM_182894	exon5	c.T839C	p.L280P	CCAAGCTCGACAA	.	394.0	142.0	414.0	1.0	.	32	.	.	Atlas-SNP
ESRRB	2103	hgsc.bcm.edu	hg19	14	76948999	76948999	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	ESRRB	NM_004452	exon7	c.T684C	p.P228P	CATGCCTCCCCCT	.	109.0	5.0	134.0	0.0	.	114	.	.	Atlas-SNP
SYNE3	161176	hgsc.bcm.edu	hg19	14	95932451	95932451	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	SYNE3	NM_152592	exon3	c.G444A	p.E148E	CTGCTTCTCCTTC	.	52.0	19.0	69.0	0.0	.	130	.	.	Atlas-SNP
EIF2AK4	440275	hgsc.bcm.edu	hg19	15	40313196	40313196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	EIF2AK4	NM_001013703	exon31	c.A4270G	p.I1424V	GCAGGCATCACAG	.	165.0	68.0	182.0	0.0	.	107	.	.	Atlas-SNP
RFX7	64864	hgsc.bcm.edu	hg19	15	56385746	56385746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	RFX7	NM_022841	exon9	c.A4180G	p.I1394V	CATTGATGCTGCC	.	70.0	25.0	97.0	0.0	.	170	.	.	Atlas-SNP
PRSS36	146547	hgsc.bcm.edu	hg19	16	31153852	31153852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	PRSS36	NM_001258291	exon10	c.C1471A	p.H491N	GCGCGTGCGGCGG	.	26.0	17.0	30.0	0.0	.	50	.	.	Atlas-SNP
CRK	1398	hgsc.bcm.edu	hg19	17	1359301	1359301	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	CRK	NM_016823	exon1	c.G111A	p.V37V	GTCCCGCACCAGG	.	51.0	19.0	82.0	0.0	.	14	.	.	Atlas-SNP
WDR81	124997	hgsc.bcm.edu	hg19	17	1630159	1630159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	WDR81	NM_001163809	exon1	c.C1906T	p.P636S	GGCCGGCCAGTTT	.	72.0	36.0	72.0	0.0	.	180	.	.	Atlas-SNP
NLRP1	22861	hgsc.bcm.edu	hg19	17	5463296	5463296	+	Silent	SNP	C	C	T	rs369131551		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	NLRP1	NM_033007	exon4	c.G720A	p.T240T	TGGGGGCGTTCCT	.	82.0	30.0	95.0	0.0	.	358	.	.	Atlas-SNP
PIK3R5	23533	hgsc.bcm.edu	hg19	17	8791704	8791704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	PIK3R5	NM_001142633	exon10	c.T1400C	p.V467A	GGTGATACTGGTT	.	58.0	4.0	70.0	0.0	.	79	.	.	Atlas-SNP
KRT34	3885	hgsc.bcm.edu	hg19	17	39538463	39538463	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	KRT34	NM_021013	exon1	c.C162G	p.C54W	GGTGCGGCAGCCC	.	129.0	38.0	165.0	0.0	.	71	.	.	Atlas-SNP
ITGA2B	3674	hgsc.bcm.edu	hg19	17	42463044	42463044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	ITGA2B	NM_000419	exon4	c.C449A	p.T150N	TCCTCAGTCTTTT	.	36.0	14.0	64.0	0.0	.	88	.	.	Atlas-SNP
PSMD12	5718	hgsc.bcm.edu	hg19	17	65343236	65343236	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	PSMD12	NM_002816	exon7	c.A791T	p.Q264L	ACCTGCTGCCATT	.	46.0	12.0	74.0	0.0	.	32	.	.	Atlas-SNP
LGALS3BP	3959	hgsc.bcm.edu	hg19	17	76968132	76968132	+	Silent	SNP	T	T	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	LGALS3BP	NM_005567	exon6	c.A1284C	p.S428S	CAGTTGTGACTTC	.	47.0	19.0	68.0	0.0	.	47	.	.	Atlas-SNP
SMCHD1	23347	hgsc.bcm.edu	hg19	18	2697978	2697978	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	AP001011.3_ENST00000320876,caecum,carcinoma,0,2	SMCHD1	NM_015295	exon10	c.C1281T	p.I427I	GATTATCCGTTAT	.	72.0	29.0	88.0	0.0	.	88	.	.	Atlas-SNP
TCF4	6925	hgsc.bcm.edu	hg19	18	52927189	52927189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	TCF4	NM_001243226	exon14	c.T1366C	p.S456P	AGAGAGATGGAGG	.	110.0	39.0	142.0	0.0	.	178	.	.	Atlas-SNP
DSEL	92126	hgsc.bcm.edu	hg19	18	65178398	65178398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	DSEL	NM_032160	exon2	c.T3478C	p.S1160P	CAGGAGACAAAGG	.	106.0	37.0	164.0	0.0	.	196	.	.	Atlas-SNP
TICAM1	148022	hgsc.bcm.edu	hg19	19	4816573	4816573	+	Missense_Mutation	SNP	C	C	T	rs377447415		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	TICAM1	NM_182919	exon2	c.G1817A	p.R606Q	GGCATTCGAGCCC	.	57.0	12.0	50.0	0.0	.	69	.	.	Atlas-SNP
KLHL26	55295	hgsc.bcm.edu	hg19	19	18778935	18778935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	KLHL26	NM_018316	exon3	c.G728T	p.R243L	GGCCGCGCGCCAG	.	29.0	10.0	48.0	0.0	.	43	.	.	Atlas-SNP
ZNF536	9745	hgsc.bcm.edu	hg19	19	30935118	30935118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	ZNF536	NM_014717	exon2	c.C649A	p.L217M	GGCAGCCTGCTGC	.	25.0	11.0	34.0	0.0	.	424	.	.	Atlas-SNP
CEBPA	1050	hgsc.bcm.edu	hg19	19	33792731	33792731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	CEBPA	NM_004364	exon1	c.C590A	p.P197Q	GCGGGCGGCGGGT	.	82.0	8.0	208.0	0.0	.	986	.	.	Atlas-SNP
SPHK2	56848	hgsc.bcm.edu	hg19	19	49132057	49132057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	SPHK2	NM_020126	exon7	c.C992T	p.S331F	GTTTCTCCTTCCT	.	61.0	18.0	74.0	0.0	.	62	.	.	Atlas-SNP
PPFIA3	8541	hgsc.bcm.edu	hg19	19	49638145	49638145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	PPFIA3	NM_003660	exon13	c.G1493A	p.R498Q	AGCTGCGGGGGAG	.	80.0	33.0	110.0	0.0	.	71	.	.	Atlas-SNP
ASPDH	554235	hgsc.bcm.edu	hg19	19	51017056	51017056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	ASPDH	NM_001114598	exon1	c.G25A	p.V9M	CGCCCACCCTCCA	.	257.0	14.0	340.0	0.0	.	22	.	.	Atlas-SNP
ZNF578	147660	hgsc.bcm.edu	hg19	19	53013919	53013919	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	.	NM_001099694	exon6	c.T285C	p.S95S	TGAAAGTTATCAC	.	222.0	94.0	254.0	0.0	.	.	.	.	Atlas-SNP
C20orf202	400831	hgsc.bcm.edu	hg19	20	1184179	1184179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	C20orf202	NM_001009612	exon1	c.C19T	p.P7S	AAGATCCCTCGGG	.	170.0	67.0	191.0	0.0	.	12	.	.	Atlas-SNP
XRN2	22803	hgsc.bcm.edu	hg19	20	21312938	21312938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	XRN2	NM_012255	exon9	c.G718A	p.G240S	ATGCTTGGCCTTG	.	80.0	33.0	102.0	0.0	.	90	.	.	Atlas-SNP
PIWIL3	440822	hgsc.bcm.edu	hg19	22	25145785	25145785	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	PIWIL3	NM_001008496	exon10	c.A1091C	p.Q364P	TTATGTTGCTGCT	.	81.0	31.0	88.0	0.0	.	115	.	.	Atlas-SNP
APOBEC3H	164668	hgsc.bcm.edu	hg19	22	39497462	39497462	+	Missense_Mutation	SNP	G	G	A	rs374311513		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	APOBEC3H	NM_001166003	exon3	c.G371A	p.R124Q	GGCTGCGGCTTCT	.	58.0	25.0	87.0	0.0	.	28	.	.	Atlas-SNP
ZNF804A	91752	hgsc.bcm.edu	hg19	2	185803460	185803471	+	In_Frame_Del	DEL	GCAGCTGCAGCC	GCAGCTGCAGCC	-	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	GCAGCTGCAGCC	GCAGCTGCAGCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	ZNF804A	NM_194250	exon4	c.3336_3347del	p.1112_1116del	.	.	94.0	30.0	86.0	0.0	.	322	.	.	Atlas-INDEL
ARID1A	8289	hgsc.bcm.edu	hg19	1	27097800	27097809	+	Frame_Shift_Del	DEL	TCCAGCCTCC	TCCAGCCTCC	-	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	TCCAGCCTCC	TCCAGCCTCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	ARID1A	NM_139135	exon12	c.3388_3397del	p.1130_1133del	.	.	36.0	22.0	137.0	0.0	.	842	.	.	Atlas-INDEL
COL11A2	1302	hgsc.bcm.edu	hg19	6	33145203	33145204	+	In_Frame_Ins	INS	-	-	GCC	novel		TCGA-DD-AADP-01A-11D-A38X-10	TCGA-DD-AADP-10A-01D-A38X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	22a818c7-14c6-4d8e-9aeb-88d94ff13da0	f2bd6609-3c48-48a0-8e21-c0d91ed42912	.	COL11A2	NM_080680	exon23	c.1957_1958insGGC	p.T653delinsGT	.	.	73.0	23.0	109.0	0.0	.	124	.	.	Atlas-INDEL
