Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ATP13A2	23400	hgsc.bcm.edu	hg19	1	17318784	17318784	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	ATP13A2	NM_022089	exon18	c.C1959A	p.V653V	GCCTTTGACGTAG	.	84.0	60.0	97.0	0.0	.	85	.	.	Atlas-SNP
KDM1A	23028	hgsc.bcm.edu	hg19	1	23409732	23409732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	KDM1A	NM_001009999	exon21	c.C2506T	p.H836Y	ACAGTGCATGGTG	.	134.0	104.0	104.0	0.0	.	49	.	.	Atlas-SNP
ZMYM6	9204	hgsc.bcm.edu	hg19	1	35453298	35453298	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	ZMYM6	NM_007167	exon16	c.A3385C	p.S1129R	GGAGACTTAAATT	.	398.0	23.0	481.0	0.0	.	110	.	.	Atlas-SNP
GRIK3	2899	hgsc.bcm.edu	hg19	1	37282713	37282713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	GRIK3	NM_000831	exon13	c.C2039T	p.T680I	ATTTTGGTTTGCT	.	147.0	14.0	162.0	0.0	.	195	.	.	Atlas-SNP
EIF2B3	8891	hgsc.bcm.edu	hg19	1	45407298	45407298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	EIF2B3,right_upper_lobe,carcinoma,0,1	EIF2B3	NM_020365	exon4	c.G334A	p.V112I	AGGCAACGTCTGT	.	175.0	10.0	177.0	0.0	.	43	.	.	Atlas-SNP
PTGER3	5733	hgsc.bcm.edu	hg19	1	71512486	71512486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	PTGER3	NM_001126044	exon1	c.C775T	p.R259C	GGCAGCGGGACAC	.	94.0	63.0	102.0	0.0	.	246	.	.	Atlas-SNP
TTLL7	79739	hgsc.bcm.edu	hg19	1	84417572	84417572	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	TTLL7	NM_024686	exon3	c.A113T	p.K38M	GTTCCCTTCTTTT	.	203.0	10.0	200.0	0.0	.	93	.	.	Atlas-SNP
VAV3	10451	hgsc.bcm.edu	hg19	1	108185361	108185361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	VAV3,caecum,carcinoma,0,1	VAV3	NM_006113	exon20	c.G1794T	p.Q598H	AATGACCTGCATC	.	110.0	6.0	142.0	0.0	.	176	.	.	Atlas-SNP
PRR9	574414	hgsc.bcm.edu	hg19	1	153190630	153190630	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	PRR9	NM_001195571	exon2	c.A10T	p.S4C	TCCTTCAGTGAGC	.	142.0	7.0	153.0	0.0	.	1	.	.	Atlas-SNP
UBAP2L	9898	hgsc.bcm.edu	hg19	1	154226506	154226506	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	UBAP2L	NM_001127320	exon15	c.A1795T	p.T599S	ACACAGACTCGGC	.	108.0	51.0	115.0	0.0	.	197	.	.	Atlas-SNP
INSRR	3645	hgsc.bcm.edu	hg19	1	156816468	156816468	+	Silent	SNP	G	G	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	INSRR	NM_014215	exon8	c.C1653G	p.P551P	GCTTAGGGGCAGC	.	124.0	48.0	122.0	0.0	.	309	.	.	Atlas-SNP
PRDX6	9588	hgsc.bcm.edu	hg19	1	173455515	173455515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	PRDX6	NM_004905	exon4	c.G521A	p.R174K	AAAAAAGGGTTGC	.	154.0	61.0	149.0	0.0	.	20	.	.	Atlas-SNP
LEMD1	93273	hgsc.bcm.edu	hg19	1	205388368	205388368	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	LEMD1	NM_001001552	exon3	c.T195C	p.D65D	GCTGTCATCACTG	.	94.0	32.0	90.0	0.0	.	21	.	.	Atlas-SNP
MIA3	375056	hgsc.bcm.edu	hg19	1	222801611	222801611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	MIA3	NM_198551	exon4	c.A1049G	p.Y350C	AGAAATATCCAAC	.	299.0	112.0	280.0	0.0	.	167	.	.	Atlas-SNP
PXDN	7837	hgsc.bcm.edu	hg19	2	1642646	1642646	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	PXDN	NM_012293	exon21	c.A4178G	p.Q1393R	GTCTTCTGCATTT	.	73.0	30.0	78.0	0.0	.	255	.	.	Atlas-SNP
C2orf53	339779	hgsc.bcm.edu	hg19	2	27360805	27360805	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	C2orf53	NM_178553	exon3	c.C393A	p.S131S	AGGCTGGGAGGGA	.	88.0	34.0	86.0	0.0	.	45	.	.	Atlas-SNP
C2orf73	129852	hgsc.bcm.edu	hg19	2	54587449	54587449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	C2orf73	NM_001100396	exon5	c.C614A	p.S205Y	AACAGTCCAAAAA	.	171.0	77.0	173.0	0.0	.	17	.	.	Atlas-SNP
REV1	51455	hgsc.bcm.edu	hg19	2	100050856	100050856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	REV1	NM_001037872	exon8	c.C1376T	p.P459L	GCGCCAGGACGTA	.	96.0	40.0	100.0	0.0	.	100	.	.	Atlas-SNP
MYO7B	4648	hgsc.bcm.edu	hg19	2	128366406	128366406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	MYO7B	NM_001080527	exon22	c.C2767T	p.P923S	TTCCTCCCTGCCA	.	211.0	99.0	158.0	0.0	.	359	.	.	Atlas-SNP
NXPH2	11249	hgsc.bcm.edu	hg19	2	139429158	139429158	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	NXPH2	NM_007226	exon2	c.G129A	p.L43L	GCCGACCAACGTC	.	143.0	57.0	112.0	0.0	.	63	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141739748	141739748	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	LRP1B	NM_018557	exon18	c.A2868T	p.T956T	TTCATCTGTCTGG	.	83.0	26.0	97.0	0.0	.	1315	.	.	Atlas-SNP
MBD5	55777	hgsc.bcm.edu	hg19	2	149267693	149267693	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	MBD5	NM_018328	exon14	c.A4402G	p.M1468V	GACAAAATGTCTG	.	368.0	144.0	399.0	0.0	.	164	.	.	Atlas-SNP
SCN1A	6323	hgsc.bcm.edu	hg19	2	166868648	166868648	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	SCN1A	NM_001165963	exon19	c.T3850A	p.W1284R	AACACCAGGCATT	.	285.0	105.0	330.0	0.0	.	641	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168115577	168115577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	XIRP2	NM_001199143	exon11	c.G2620A	p.V874M	AACACCGTGAAAA	.	488.0	185.0	550.0	1.0	.	914	.	.	Atlas-SNP
UBR3	130507	hgsc.bcm.edu	hg19	2	170806382	170806382	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	UBR3	NM_172070	exon23	c.T3352G	p.L1118V	GAAATTTTAATCC	.	289.0	138.0	253.0	0.0	.	182	.	.	Atlas-SNP
NABP1	64859	hgsc.bcm.edu	hg19	2	192546742	192546742	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	.	NM_001031716	exon3	c.G301T	p.E101X	ATTGGGGAGTAAG	.	694.0	273.0	787.0	1.0	.	.	.	.	Atlas-SNP
AOX1	316	hgsc.bcm.edu	hg19	2	201521589	201521589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	AOX1	NM_001159	exon27	c.C3100T	p.L1034F	ATTTATCTTGATG	.	96.0	30.0	123.0	0.0	.	152	.	.	Atlas-SNP
FN1	2335	hgsc.bcm.edu	hg19	2	216261901	216261901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	FN1	NM_212476	exon23	c.C3563A	p.T1188N	ACTCCAGTGTCAG	.	93.0	32.0	104.0	0.0	.	521	.	.	Atlas-SNP
GIGYF2	26058	hgsc.bcm.edu	hg19	2	233709124	233709124	+	Missense_Mutation	SNP	A	A	G	rs371374687		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	GIGYF2	NM_001103147	exon27	c.A3208G	p.I1070V	GGCTCTATAAATA	.	144.0	59.0	138.0	0.0	.	288	.	.	Atlas-SNP
UGT1A3	54659	hgsc.bcm.edu	hg19	2	234638551	234638551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	UGT1A3	NM_019093	exon1	c.A779G	p.D260G	GAGGGGACTTTGT	.	142.0	47.0	150.0	0.0	.	91	.	.	Atlas-SNP
DENND6A	201627	hgsc.bcm.edu	hg19	3	57646534	57646534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	.	NM_152678	exon7	c.G652T	p.V218L	CTGGCACTGGGGC	.	1369.0	553.0	1511.0	1.0	.	.	.	.	Atlas-SNP
EAF2	55840	hgsc.bcm.edu	hg19	3	121573668	121573668	+	Silent	SNP	A	A	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	EAF2	NM_018456	exon3	c.A336C	p.T112T	AAAAACAAGGTAT	.	693.0	267.0	729.0	0.0	.	26	.	.	Atlas-SNP
MUC13	56667	hgsc.bcm.edu	hg19	3	124635177	124635177	+	Silent	SNP	A	A	G	rs370885108	alternate_allele	TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	MUC13	NM_033049	exon6	c.T948C	p.F316F	GTTTAGAAAGTTG	.	217.0	100.0	214.0	0.0	.	57	.	.	Atlas-SNP
COL6A6	131873	hgsc.bcm.edu	hg19	3	130380832	130380832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	COL6A6	NM_001102608	exon34	c.T6182C	p.I2061T	CTTTTATTGGTCA	.	133.0	49.0	111.0	0.0	.	497	.	.	Atlas-SNP
ESYT3	83850	hgsc.bcm.edu	hg19	3	138183192	138183192	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	ESYT3	NM_031913	exon9	c.G921A	p.V307V	GGGGGTGATCAGA	.	63.0	23.0	74.0	0.0	.	64	.	.	Atlas-SNP
CCDC39	339829	hgsc.bcm.edu	hg19	3	180377348	180377348	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	CCDC39	NM_181426	exon6	c.A630G	p.A210A	ATCTTGTGCTGCT	.	123.0	49.0	177.0	0.0	.	242	.	.	Atlas-SNP
KIAA0226	9711	hgsc.bcm.edu	hg19	3	197409349	197409349	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	KIAA0226	NM_014687	exon14	c.A2118T	p.P706P	TGGGGCTGGATGA	.	129.0	54.0	165.0	0.0	.	136	.	.	Atlas-SNP
KIAA0226	9711	hgsc.bcm.edu	hg19	3	197409351	197409351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	KIAA0226	NM_014687	exon14	c.C2116T	p.P706S	GGGCTGGATGAAC	.	135.0	54.0	166.0	0.0	.	136	.	.	Atlas-SNP
KIAA0232	9778	hgsc.bcm.edu	hg19	4	6865250	6865250	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	KIAA0232	NM_014743	exon7	c.A3141G	p.P1047P	CAATCCATTTTCA	.	127.0	43.0	123.0	0.0	.	102	.	.	Atlas-SNP
NSUN7	79730	hgsc.bcm.edu	hg19	4	40809188	40809188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	NSUN7	NM_024677	exon11	c.T1511C	p.I504T	TTTCTATTTTAAC	.	152.0	62.0	160.0	0.0	.	70	.	.	Atlas-SNP
PRKG2	5593	hgsc.bcm.edu	hg19	4	82125912	82125912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	PRKG2	NM_006259	exon1	c.C290T	p.S97F	TCTGGAGAGGCCT	.	154.0	61.0	149.0	0.0	.	195	.	.	Atlas-SNP
GYPE	2996	hgsc.bcm.edu	hg19	4	144801614	144801614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	GYPE	NM_198682	exon2	c.C86T	p.T29I	GTTGAAGTGTGCA	.	457.0	203.0	458.0	0.0	.	21	.	.	Atlas-SNP
KLHL2	11275	hgsc.bcm.edu	hg19	4	166184404	166184404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	KLHL2	NM_001161521	exon5	c.G449T	p.C150F	CTTGTTGTGAATT	.	225.0	109.0	263.0	0.0	.	42	.	.	Atlas-SNP
SH3RF1	57630	hgsc.bcm.edu	hg19	4	170043263	170043263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	SH3RF1	NM_020870	exon7	c.C1334T	p.T445I	GGGCGAGTCTGCG	.	102.0	39.0	101.0	0.0	.	60	.	.	Atlas-SNP
IL6ST	3572	hgsc.bcm.edu	hg19	5	55265599	55265599	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	IL6ST	NM_175767	exon4	c.T149C	p.L50P	TCCTTTAGCACAC	.	178.0	113.0	106.0	0.0	.	75	.	.	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	hg19	5	71403461	71403461	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	MAP1B	NM_005909	exon1	c.A103C	p.S35R	CTTGACAGCAAGT	.	130.0	28.0	78.0	0.0	.	243	.	.	Atlas-SNP
SNCAIP	9627	hgsc.bcm.edu	hg19	5	121780326	121780326	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	SNCAIP_ENST00000379533,NS,carcinoma,0,2	SNCAIP	NM_005460	exon8	c.C1491A	p.A497A	GAGCGCCGAGCGG	.	274.0	59.0	160.0	0.0	.	308	.	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	hg19	5	127614345	127614345	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	FBN2	NM_001999	exon57	c.T7327G	p.Y2443D	TTGTATATCCTGG	.	139.0	23.0	103.0	0.0	.	858	.	.	Atlas-SNP
PCDHGA8	9708	hgsc.bcm.edu	hg19	5	140772927	140772927	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	PCDHGA8	NM_014004	exon1	c.C547G	p.Q183E	GACGTGCAGACTG	.	332.0	86.0	198.0	0.0	.	146	.	.	Atlas-SNP
PCDHGC5	56097	hgsc.bcm.edu	hg19	5	140870856	140870856	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	PCDHGC5	NM_018929	exon1	c.C2049T	p.H683H	CATACACCCTCCT	.	178.0	42.0	110.0	0.0	.	199	.	.	Atlas-SNP
FAM71B	153745	hgsc.bcm.edu	hg19	5	156590354	156590354	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	FAM71B	NM_130899	exon2	c.C922T	p.Q308X	TCACTTGACCTGG	.	81.0	62.0	55.0	0.0	.	145	.	.	Atlas-SNP
TTC1	7265	hgsc.bcm.edu	hg19	5	159463724	159463724	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	TTC1	NM_003314	exon4	c.A418T	p.S140C	TCTTATAGTCGAG	.	112.0	23.0	95.0	0.0	.	26	.	.	Atlas-SNP
PRPF4B	8899	hgsc.bcm.edu	hg19	6	4060749	4060749	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	PRPF4B	NM_003913	exon15	c.C2923T	p.Q975X	GTACACCAGCTAA	.	647.0	453.0	374.0	2.0	.	140	.	.	Atlas-SNP
ZBTB9	221504	hgsc.bcm.edu	hg19	6	33423514	33423514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	ZBTB9,larynx,carcinoma,0,1	ZBTB9	NM_152735	exon2	c.G637A	p.E213K	GTGGAAGAAGAAG	.	157.0	95.0	93.0	0.0	.	23	.	.	Atlas-SNP
CDKN1A	1026	hgsc.bcm.edu	hg19	6	36652053	36652053	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	CDKN1A	NM_001220778	exon2	c.C175T	p.L59L	ACACCACTGGAGG	.	142.0	31.0	83.0	0.0	.	27	.	.	Atlas-SNP
GPRC6A	222545	hgsc.bcm.edu	hg19	6	117130749	117130749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	GPRC6A	NM_148963	exon2	c.G226A	p.A76T	TCATGGCAAGAGT	.	36.0	24.0	84.0	0.0	.	152	.	.	Atlas-SNP
MCM9	254394	hgsc.bcm.edu	hg19	6	119150342	119150342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	MCM9	NM_017696	exon8	c.A1397G	p.Q466R	GACTCCTGGGGGT	.	69.0	44.0	146.0	0.0	.	73	.	.	Atlas-SNP
UTRN	7402	hgsc.bcm.edu	hg19	6	144863929	144863929	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	UTRN	NM_007124	exon45	c.6520-2A>G	.	TGCGGTAGATTTG	.	40.0	24.0	105.0	0.0	.	327	.	.	Atlas-SNP
TNS3	64759	hgsc.bcm.edu	hg19	7	47440020	47440020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	TNS3	NM_022748	exon15	c.G889A	p.V297I	AGAAGACTAATTC	.	232.0	83.0	263.0	0.0	.	140	.	.	Atlas-SNP
CACNA2D1	781	hgsc.bcm.edu	hg19	7	81593423	81593423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	CACNA2D1	NM_000722	exon34	c.C2729T	p.P910L	ACTGATGGCTATA	.	234.0	98.0	250.0	0.0	.	191	.	.	Atlas-SNP
KIAA1324L	222223	hgsc.bcm.edu	hg19	7	86526844	86526844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	KIAA1324L	NM_001142749	exon19	c.G2663A	p.G888E	CAGGCTCCCTCAA	.	92.0	38.0	133.0	0.0	.	225	.	.	Atlas-SNP
TAS2R16	50833	hgsc.bcm.edu	hg19	7	122634906	122634906	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	TAS2R16	NM_016945	exon1	c.G783C	p.W261C	AGCTTCCCAGACC	.	148.0	49.0	137.0	0.0	.	57	.	.	Atlas-SNP
GPR37	2861	hgsc.bcm.edu	hg19	7	124404046	124404046	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	GPR37	NM_005302	exon1	c.C985T	p.L329L	CCTCCAGCAGCCA	.	28.0	13.0	42.0	0.0	.	89	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	hg19	7	149524046	149524046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	.	NM_198455	exon104	c.A14765G	p.Q4922R	ACTGTCAGGGTGA	.	35.0	15.0	55.0	0.0	.	.	.	.	Atlas-SNP
ADAM2	2515	hgsc.bcm.edu	hg19	8	39678669	39678669	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	ADAM2	NM_001464	exon6	c.A365T	p.N122I	CTAACATTTTCAA	.	415.0	86.0	257.0	0.0	.	124	.	.	Atlas-SNP
CNGB3	54714	hgsc.bcm.edu	hg19	8	87755757	87755757	+	Silent	SNP	T	T	G	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	CNGB3	NM_019098	exon1	c.A99C	p.P33P	ATTACTTGGGTGA	.	288.0	188.0	153.0	0.0	.	176	.	.	Atlas-SNP
NDUFAF6	137682	hgsc.bcm.edu	hg19	8	96037272	96037272	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	.	NM_152416	exon1	c.G36T	p.P12P	GGGGCCGTTGCGG	.	11.0	7.0	3.0	0.0	.	.	.	.	Atlas-SNP
DOCK8	81704	hgsc.bcm.edu	hg19	9	434898	434898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	DOCK8	NM_203447	exon39	c.G5002A	p.A1668T	GTGCACGCCGCTG	.	60.0	27.0	68.0	0.0	.	401	.	.	Atlas-SNP
NOL6	65083	hgsc.bcm.edu	hg19	9	33467217	33467217	+	Missense_Mutation	SNP	C	C	G	rs374756474	alternate_allele	TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	NOL6	NM_022917	exon14	c.G1769C	p.R590P	AAACGCCGAAGCT	.	104.0	53.0	91.0	0.0	.	85	.	.	Atlas-SNP
VPS13A	23230	hgsc.bcm.edu	hg19	9	79898289	79898289	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	VPS13A	NM_001018038	exon30	c.A3137T	p.N1046I	CCACAAATGAAGA	.	348.0	137.0	375.0	1.0	.	735	.	.	Atlas-SNP
USP20	10868	hgsc.bcm.edu	hg19	9	132638408	132638408	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	USP20	NM_001110303	exon22	c.2301-1G>T	.	GGCACAGATTCGG	.	172.0	67.0	206.0	0.0	.	186	.	.	Atlas-SNP
GTF3C4	9329	hgsc.bcm.edu	hg19	9	135553599	135553599	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	GTF3C4	NM_012204	exon2	c.A593G	p.N198S	ATCTCAACAGACT	.	129.0	46.0	153.0	0.0	.	53	.	.	Atlas-SNP
ITIH5	80760	hgsc.bcm.edu	hg19	10	7659077	7659077	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	ITIH5	NM_001001851	exon6	c.A821T	p.Q274L	ATTACCTGGATGT	.	103.0	6.0	86.0	0.0	.	343	.	.	Atlas-SNP
CACNB2	783	hgsc.bcm.edu	hg19	10	18828423	18828423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	CACNB2	NM_201596	exon14	c.C1753T	p.H585Y	GCCTCACACCGTG	.	202.0	78.0	206.0	0.0	.	220	.	.	Atlas-SNP
ZNF239	8187	hgsc.bcm.edu	hg19	10	44052197	44052197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	ZNF239	NM_001099283	exon2	c.C1331T	p.S444F	AGGTTGGAGCTCT	.	93.0	40.0	91.0	0.0	.	45	.	.	Atlas-SNP
TMEM72	643236	hgsc.bcm.edu	hg19	10	45406975	45406975	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	TMEM72	NM_001123376	exon1	c.G15A	p.V5V	CCAGGTGTTCTGG	.	32.0	12.0	39.0	0.0	.	25	.	.	Atlas-SNP
SORCS1	114815	hgsc.bcm.edu	hg19	10	108924108	108924108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	SORCS1	NM_001206572	exon1	c.G177T	p.Q59H	CCGCCCCTGGTGG	.	67.0	7.0	72.0	0.0	.	534	.	.	Atlas-SNP
SEC23IP	11196	hgsc.bcm.edu	hg19	10	121678002	121678002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	SEC23IP	NM_007190	exon10	c.G1851T	p.Q617H	GAAGCAGCTACAT	.	87.0	6.0	111.0	0.0	.	100	.	.	Atlas-SNP
MMP26	56547	hgsc.bcm.edu	hg19	11	5013312	5013312	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	MMP26	NM_021801	exon5	c.C714T	p.F238F	AACCTTCCAGCTC	.	183.0	72.0	164.0	0.0	.	49	.	.	Atlas-SNP
RBMXL2	27288	hgsc.bcm.edu	hg19	11	7111063	7111063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	RBMXL2	NM_014469	exon1	c.T712C	p.Y238H	GGAGAGTACACCC	.	59.0	16.0	85.0	0.0	.	47	.	.	Atlas-SNP
KCNA4	3739	hgsc.bcm.edu	hg19	11	30034089	30034089	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	KCNA4	NM_002233	exon2	c.C137G	p.A46G	GTGGCCGCTGCAA	.	41.0	17.0	35.0	0.0	.	158	.	.	Atlas-SNP
PACSIN3	29763	hgsc.bcm.edu	hg19	11	47201829	47201829	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	PACSIN3	NM_016223	exon6	c.G511T	p.E171X	GGCTCTCCCTCGT	.	41.0	18.0	45.0	0.0	.	28	.	.	Atlas-SNP
OR5D13	390142	hgsc.bcm.edu	hg19	11	55541283	55541283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	OR5D13	NM_001001967	exon1	c.C370A	p.R124S	TATGACCGTTTTG	.	176.0	72.0	154.0	0.0	.	96	.	.	Atlas-SNP
OR8J3	81168	hgsc.bcm.edu	hg19	11	55905105	55905105	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	OR8J3	NM_001004064	exon1	c.C90A	p.V30V	TAGGAAGACCAGG	.	134.0	63.0	167.0	0.0	.	112	.	.	Atlas-SNP
SLC22A24	283238	hgsc.bcm.edu	hg19	11	62863471	62863471	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	SLC22A24	NM_001136506	exon6	c.C1062G	p.C354W	CACAAAGCACAGG	.	171.0	70.0	171.0	0.0	.	31	.	.	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	hg19	11	78525437	78525437	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	.	NM_001098816	exon13	c.C1685A	p.S562X	TCCACCGACTCTG	.	229.0	91.0	237.0	0.0	.	.	.	.	Atlas-SNP
FZD4	8322	hgsc.bcm.edu	hg19	11	86663371	86663371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	FZD4	NM_012193	exon2	c.C427A	p.L143M	AGTTCAGACTCTC	.	144.0	51.0	175.0	0.0	.	52	.	.	Atlas-SNP
GJB2	2706	hgsc.bcm.edu	hg19	13	20763464	20763464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	GJB2	NM_004004	exon2	c.C257T	p.T86M	GCTGGCGTGGACA	.	65.0	26.0	64.0	0.0	.	19	.	.	Atlas-SNP
GPR12	2835	hgsc.bcm.edu	hg19	13	27333433	27333433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	GPR12	NM_005288	exon2	c.G532T	p.G178C	TCCAGCCCATGAC	.	70.0	31.0	61.0	0.0	.	67	.	.	Atlas-SNP
PCDH9	5101	hgsc.bcm.edu	hg19	13	67799953	67799953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	PCDH9	NM_203487	exon2	c.A2620G	p.R874G	ACTTCCTTTTCTT	.	168.0	69.0	141.0	0.0	.	252	.	.	Atlas-SNP
KLHL1	57626	hgsc.bcm.edu	hg19	13	70535504	70535504	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	KLHL1	NM_020866	exon3	c.G753C	p.E251D	GATCTCCTCTTGC	.	131.0	62.0	108.0	0.0	.	164	.	.	Atlas-SNP
CHMP4A	29082	hgsc.bcm.edu	hg19	14	24679870	24679870	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	CHMP4A	NM_014169	exon4	c.A593T	p.D198V	TCCACATCATCTC	.	111.0	43.0	114.0	0.0	.	20	.	.	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	hg19	14	102500705	102500705	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	DYNC1H1	NM_001376	exon56	c.A10670T	p.D3557V	ATGCTGATGAGCG	.	128.0	55.0	147.0	0.0	.	395	.	.	Atlas-SNP
SNRPN	6638	hgsc.bcm.edu	hg19	15	25213230	25213230	+	Splice_Site	SNP	G	G	T	rs368905564	alternate_allele	TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	SNRPN	.	.	.	.	AACCAGGTTAGAG	.	39.0	12.0	48.0	0.0	.	58	.	.	Atlas-SNP
FMN1	342184	hgsc.bcm.edu	hg19	15	33260970	33260970	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	FMN1	NM_001103184	exon4	c.C2263G	p.P755A	AACTGGGCTCGAT	.	189.0	57.0	200.0	0.0	.	174	.	.	Atlas-SNP
MGA	23269	hgsc.bcm.edu	hg19	15	42042688	42042688	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	MGA	NM_001164273	exon17	c.G6883C	p.D2295H	AGTGCTGACTTCA	.	106.0	48.0	119.0	0.0	.	264	.	.	Atlas-SNP
TMEM8A	58986	hgsc.bcm.edu	hg19	16	422089	422089	+	Silent	SNP	C	C	A	rs141574918	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	TMEM8A	NM_021259	exon13	c.G2214T	p.P738P	AGGTGGCGGCAGC	.	78.0	27.0	91.0	0.0	.	49	.	C|1.000;T|0.000	Atlas-SNP
ITGAM	3684	hgsc.bcm.edu	hg19	16	31332817	31332817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	ITGAM	NM_001145808	exon16	c.T1874C	p.M625T	CAATCATGGAGTT	.	159.0	66.0	173.0	0.0	.	137	.	.	Atlas-SNP
ITGAM	3684	hgsc.bcm.edu	hg19	16	31336335	31336335	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	ITGAM	NM_001145808	exon19	c.C2349A	p.I783I	CAGCATCACCTTC	.	60.0	18.0	59.0	0.0	.	137	.	.	Atlas-SNP
TGFB1I1	7041	hgsc.bcm.edu	hg19	16	31485920	31485920	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	TGFB1I1	NM_001042454	exon7	c.A556C	p.S186R	GTGGTGAGCTCCA	.	108.0	44.0	112.0	0.0	.	60	.	.	Atlas-SNP
MYO1C	4641	hgsc.bcm.edu	hg19	17	1378257	1378257	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	MYO1C	NM_001080779	exon15	c.G1644T	p.A548A	CTCCCCCGCATAG	.	122.0	49.0	98.0	0.0	.	57	.	.	Atlas-SNP
USP43	124739	hgsc.bcm.edu	hg19	17	9604706	9604706	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	USP43	NM_001267576	exon12	c.A1700T	p.Q567L	ACTGCCAAGTCCT	.	57.0	23.0	75.0	0.0	.	65	.	.	Atlas-SNP
SUPT6H	6830	hgsc.bcm.edu	hg19	17	27028455	27028455	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	SUPT6H	NM_003170	exon37	c.4995-2A>G	.	CCTCCCAGGTCCA	.	66.0	34.0	70.0	0.0	.	165	.	.	Atlas-SNP
KRTAP17-1	83902	hgsc.bcm.edu	hg19	17	39471767	39471767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	KRTAP17-1	NM_031964	exon1	c.T136A	p.S46T	AGCCAGAGCCCCC	.	54.0	6.0	24.0	0.0	.	14	.	.	Atlas-SNP
KRT16	3868	hgsc.bcm.edu	hg19	17	39766282	39766282	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	KRT16	NM_005557	exon9	c.1328-1G>A	.	TGAAGACTGTGGG	.	78.0	29.0	89.0	0.0	.	45	.	.	Atlas-SNP
CTAGE1	64693	hgsc.bcm.edu	hg19	18	19997418	19997418	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	CTAGE1	NM_172241	exon1	c.A357T	p.E119D	CTCTTTTTCTAGA	.	99.0	36.0	136.0	0.0	.	146	.	.	Atlas-SNP
LIPG	9388	hgsc.bcm.edu	hg19	18	47101852	47101852	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	LIPG	NM_006033	exon5	c.A685T	p.S229C	GGCTTGAGCATTG	.	91.0	34.0	95.0	0.0	.	47	.	.	Atlas-SNP
CCDC68	80323	hgsc.bcm.edu	hg19	18	52604137	52604137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	CCDC68,NS,malignant_melanoma,0,1	CCDC68	NM_025214	exon6	c.G398A	p.R133K	AATAATCTCTGGG	.	87.0	37.0	122.0	0.0	.	38	.	.	Atlas-SNP
SAFB2	9667	hgsc.bcm.edu	hg19	19	5594100	5594100	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	SAFB2	NM_014649	exon15	c.T2009G	p.L670R	CACTCGAGCTGCA	.	71.0	25.0	89.0	0.0	.	90	.	.	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	hg19	19	11143970	11143970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	SMARCA4	NM_003072	exon26	c.T3551C	p.L1184P	AGGACCTGCAAGC	.	132.0	56.0	146.0	0.0	.	502	.	.	Atlas-SNP
MYO9B	4650	hgsc.bcm.edu	hg19	19	17321609	17321609	+	Missense_Mutation	SNP	G	G	A	rs373618149		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	MYO9B	NM_001130065	exon38	c.G5882A	p.R1961Q	AGGACCGGGAAAA	.	84.0	38.0	100.0	0.0	.	264	.	.	Atlas-SNP
ZNF714	148206	hgsc.bcm.edu	hg19	19	21299777	21299777	+	Missense_Mutation	SNP	G	G	A	rs111443257	bycluster	TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	ZNF714	NM_182515	exon5	c.G307A	p.E103K	GGTTATGAACTAA	.	457.0	25.0	435.0	0.0	.	121	.	.	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	hg19	19	22940876	22940876	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	ZNF99	NM_001080409	exon4	c.A1835T	p.Q612L	ATTATCTGATGTT	.	177.0	82.0	166.0	0.0	.	273	.	.	Atlas-SNP
ZNF527	84503	hgsc.bcm.edu	hg19	19	37880756	37880756	+	Missense_Mutation	SNP	G	G	T	rs202094634		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	ZNF527	NM_032453	exon5	c.G1805T	p.R602I	ATCAGAGAATTCA	.	54.0	23.0	70.0	0.0	.	78	.	G|0.999;T|0.001	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	38956904	38956904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	RYR1,NS,carcinoma,+1,1	RYR1	NM_001042723	exon24	c.G3044A	p.R1015H	CAGCGCGCCGAAA	.	130.0	48.0	160.0	0.0	.	708	.	.	Atlas-SNP
BCL3	602	hgsc.bcm.edu	hg19	19	45260629	45260629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	BCL3	NM_005178	exon5	c.C770T	p.T257I	AAGAAACCGTGCA	.	136.0	53.0	179.0	0.0	.	28	.	.	Atlas-SNP
HAS1	3036	hgsc.bcm.edu	hg19	19	52216886	52216886	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	HAS1	NM_001523	exon5	c.C1531T	p.L511L	GCAGCAGCGCCCA	.	117.0	46.0	118.0	0.0	.	61	.	.	Atlas-SNP
ZNF578	147660	hgsc.bcm.edu	hg19	19	53014279	53014279	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	.	NM_001099694	exon6	c.A645T	p.S215S	CCATTCATCATTA	.	308.0	116.0	299.0	0.0	.	.	.	.	Atlas-SNP
ZNF347	84671	hgsc.bcm.edu	hg19	19	53644667	53644667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	ZNF347	NM_001172675	exon5	c.C1417T	p.L473F	TTGCAAGGTGTGA	.	110.0	47.0	109.0	0.0	.	87	.	.	Atlas-SNP
C20orf96	140680	hgsc.bcm.edu	hg19	20	270284	270284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	C20orf96	NM_153269	exon3	c.A103G	p.T35A	GCTTGGTTTCCTG	.	140.0	61.0	168.0	0.0	.	28	.	.	Atlas-SNP
ZNF217	7764	hgsc.bcm.edu	hg19	20	52198237	52198237	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	ZNF217	NM_006526	exon1	c.T1129A	p.C377S	CGGAGCAGTGAGT	.	94.0	42.0	126.0	0.0	.	227	.	.	Atlas-SNP
SYCP2	10388	hgsc.bcm.edu	hg19	20	58496502	58496502	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	SYCP2	NM_014258	exon3	c.G31T	p.E11X	ATTTTTCCAACTG	.	209.0	89.0	170.0	0.0	.	204	.	.	Atlas-SNP
CDH26	60437	hgsc.bcm.edu	hg19	20	58569360	58569360	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	CDH26_ENST00000244047,caecum,carcinoma,0,2	CDH26	NM_177980	exon11	c.T1482C	p.N494N	CATCAATGACAAC	.	94.0	45.0	92.0	0.0	.	229	.	.	Atlas-SNP
STMN3	50861	hgsc.bcm.edu	hg19	20	62273597	62273597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	STMN3	NM_015894	exon4	c.A347G	p.E116G	AGCACCTCGCGCT	.	88.0	33.0	116.0	0.0	.	19	.	.	Atlas-SNP
ICOSLG	23308	hgsc.bcm.edu	hg19	21	45655360	45655360	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	ICOSLG	NM_015259	exon4	c.C492T	p.Y164Y	CCTGGGGTAGCCG	.	64.0	43.0	113.0	0.0	.	20	.	.	Atlas-SNP
POTEH	23784	hgsc.bcm.edu	hg19	22	16287870	16287870	+	Missense_Mutation	SNP	C	C	T	rs368142357		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	POTEH	NM_001136213	exon1	c.G16A	p.G6S	TTGAACCAGCCTC	.	633.0	178.0	682.0	0.0	.	114	.	.	Atlas-SNP
CPXCR1	53336	hgsc.bcm.edu	hg19	X	88008450	88008450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	CPXCR1	NM_001184771	exon3	c.C35T	p.A12V	ATACAGCTGGAAA	.	229.0	197.0	309.0	0.0	.	83	.	.	Atlas-SNP
PLS3	5358	hgsc.bcm.edu	hg19	X	114863611	114863611	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	PLS3	NM_005032	exon4	c.C339T	p.S113S	GTTGTCCAGCGAA	.	272.0	229.0	278.0	0.0	.	60	.	.	Atlas-SNP
GPR112	139378	hgsc.bcm.edu	hg19	X	135443733	135443733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	GPR112	NM_153834	exon12	c.G7264T	p.A2422S	GGAAATGCCACAA	.	222.0	179.0	218.0	0.0	.	459	.	.	Atlas-SNP
DUSP9	1852	hgsc.bcm.edu	hg19	X	152915517	152915517	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	DUSP9	NM_001395	exon4	c.C912T	p.Y304Y	GGCCTACCTCATG	.	83.0	63.0	84.0	0.0	.	41	.	.	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15500	15500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	.	ENST00000361789	exon1	c.G754A	p.D252N	CTAGGCGACCCAG	.	64.0	17.0	26.0	0.0	.	.	.	.	Atlas-SNP
FAM120C	54954	hgsc.bcm.edu	hg19	X	54185860	54185862	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	FAM120C	NM_017848	exon2	c.888_890del	p.296_297del	.	.	127.0	97.0	152.0	0.0	.	89	.	.	Atlas-INDEL
ZNF627	199692	hgsc.bcm.edu	hg19	19	11728647	11728656	+	Frame_Shift_Del	DEL	AGAGAAACCC	AGAGAAACCC	-	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	AGAGAAACCC	AGAGAAACCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	ZNF627	NM_145295	exon4	c.1328_1337del	p.443_446del	.	.	27.0	13.0	29.0	0.0	.	43	.	.	Atlas-INDEL
FMO3	2328	hgsc.bcm.edu	hg19	1	171076962	171076962	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	FMO3	NM_001002294	exon4	c.467delC	p.P156fs	.	.	143.0	53.0	154.0	0.0	.	73	.	.	Atlas-INDEL
VAMP1	6843	hgsc.bcm.edu	hg19	12	6574098	6574099	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	VAMP1	NM_016830	exon4	c.298_299insTC	p.M100fs	.	.	63.0	16.0	78.0	0.0	.	6	.	.	Atlas-INDEL
MTMR6	9107	hgsc.bcm.edu	hg19	13	25823497	25823498	+	In_Frame_Ins	INS	-	-	TTA	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	MTMR6	NM_004685	exon14	c.1739_1740insTAA	p.D580delinsVN	.	.	137.0	37.0	183.0	0.0	.	75	.	.	Atlas-INDEL
MTMR6	9107	hgsc.bcm.edu	hg19	13	25823489	25823492	+	Frame_Shift_Del	DEL	GAAG	GAAG	-	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	GAAG	GAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	MTMR6,colon,carcinoma,0,1	MTMR6	NM_004685	exon14	c.1745_1748del	p.582_583del	.	.	135.0	36.0	178.0	0.0	.	75	.	.	Atlas-INDEL
ALB	213	hgsc.bcm.edu	hg19	4	74281992	74281992	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	ALB	NM_000477	exon10	c.1210delC	p.L404fs	.	.	335.0	150.0	350.0	0.0	.	132	.	.	Atlas-INDEL
ESRP2	80004	hgsc.bcm.edu	hg19	16	68265386	68265401	+	Frame_Shift_Del	DEL	TGCTGGTTGAGCACCA	TGCTGGTTGAGCACCA	-	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	TGCTGGTTGAGCACCA	TGCTGGTTGAGCACCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	ESRP2	NM_024939	exon11	c.1497_1512del	p.499_504del	.	.	65.0	17.0	83.0	0.0	.	118	.	.	Atlas-INDEL
DDX11	1663	hgsc.bcm.edu	hg19	12	31253960	31253961	+	Splice_Site	INS	-	-	A	novel		TCGA-DD-AADQ-01A-11D-A40R-10	TCGA-DD-AADQ-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ad3707-975a-4455-a65c-976f9cc645ad	f1879db2-297f-44d1-b52f-3cbf282a8ecd	.	DDX11	NM_152438	exon20	c.1949-1->A	.	.	.	59.0	13.0	87.0	0.0	.	188	.	.	Atlas-INDEL
