Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ANGPTL7	10218	hgsc.bcm.edu	hg19	1	11249740	11249740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	ANGPTL7	NM_021146	exon1	c.C104T	p.P35L	AGACACCAGCACA	.	157.0	57.0	146.0	0.0	.	23	.	.	Atlas-SNP
STMN1	3925	hgsc.bcm.edu	hg19	1	26230232	26230232	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	STMN1	NM_005563	exon3	c.A86T	p.K29I	GATTCTTTTGACC	.	71.0	20.0	61.0	0.0	.	22	.	.	Atlas-SNP
CYP4B1	1580	hgsc.bcm.edu	hg19	1	47279879	47279879	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	CYP4B1	NM_001099772	exon7	c.776-2A>G	.	TGGTTCAGACCAG	.	83.0	26.0	74.0	0.0	.	81	.	.	Atlas-SNP
CYP4A11	1579	hgsc.bcm.edu	hg19	1	47400132	47400132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	CYP4A11	NM_000778	exon7	c.T890C	p.L297S	TTGGCCAAGAGGA	.	181.0	47.0	115.0	0.0	.	77	.	.	Atlas-SNP
LRP8	7804	hgsc.bcm.edu	hg19	1	53715077	53715077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	LRP8	NM_004631	exon18	c.C2828T	p.S943F	AGCTCGGAAAGAG	.	111.0	34.0	94.0	0.0	.	58	.	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	144892215	144892215	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	PDE4DIP	NM_001002811	exon19	c.A3398T	p.X1133L	TGAAGCTATAGCT	.	246.0	42.0	164.0	0.0	.	817	.	.	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	hg19	1	152323287	152323287	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	FLG2	NM_001014342	exon3	c.A6975T	p.A2325A	ATGACTTGCTCTA	.	147.0	50.0	104.0	0.0	.	431	.	.	Atlas-SNP
ASH1L	55870	hgsc.bcm.edu	hg19	1	155319387	155319387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	ASH1L	NM_018489	exon18	c.A7367G	p.D2456G	GAAGAATCTGCAA	.	252.0	86.0	218.0	0.0	.	279	.	.	Atlas-SNP
CD5L	922	hgsc.bcm.edu	hg19	1	157805814	157805814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	CD5L	NM_005894	exon3	c.C187T	p.R63W	GCTCCCGGCACAA	.	80.0	29.0	45.0	0.0	.	112	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158595952	158595952	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	SPTA1	NM_003126	exon42	c.C5894A	p.T1965N	AGAAGAGTGAGGA	.	164.0	49.0	101.0	0.0	.	720	.	.	Atlas-SNP
FCRL6	343413	hgsc.bcm.edu	hg19	1	159772232	159772232	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	FCRL6	NM_001004310	exon1	c.T18A	p.A6A	GACGGCTGTGCTG	.	62.0	17.0	42.0	0.0	.	61	.	.	Atlas-SNP
SLC19A2	10560	hgsc.bcm.edu	hg19	1	169446983	169446983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	SLC19A2	NM_006996	exon2	c.A217G	p.I73V	GATAAATTTCATT	.	333.0	126.0	227.0	0.0	.	35	.	.	Atlas-SNP
WNT9A	7483	hgsc.bcm.edu	hg19	1	228109383	228109383	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	WNT9A	NM_003395	exon4	c.A934T	p.R312W	GGCACCTACGGCC	.	102.0	35.0	88.0	0.0	.	39	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228447295	228447295	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	OBSCN	NM_001271223	exon17	c.A4955T	p.Q1652L	TGGCCCAGGCCCA	.	99.0	33.0	100.0	0.0	.	2142	.	.	Atlas-SNP
PGBD5	79605	hgsc.bcm.edu	hg19	1	230492898	230492898	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	PGBD5	NM_001258311	exon2	c.G501C	p.M167I	CGCCTTCATCTCC	.	119.0	33.0	93.0	0.0	.	73	.	.	Atlas-SNP
PCNXL2	80003	hgsc.bcm.edu	hg19	1	233388234	233388234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	PCNXL2	NM_014801	exon7	c.A1994G	p.N665S	TGTCTATTGCCCT	.	137.0	50.0	129.0	0.0	.	204	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237814791	237814791	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	RYR2	NM_001035	exon51	c.T7814A	p.M2605K	CAAAGATGCCTCT	.	206.0	77.0	141.0	0.0	.	1273	.	.	Atlas-SNP
WDR64	128025	hgsc.bcm.edu	hg19	1	241912886	241912886	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	WDR64	NM_144625	exon13	c.G1602A	p.E534E	GCAGGAGATGAAG	.	244.0	31.0	159.0	0.0	.	234	.	.	Atlas-SNP
OR2G2	81470	hgsc.bcm.edu	hg19	1	247752022	247752022	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	OR2G2	NM_001001915	exon1	c.A361T	p.M121L	GCTGTGATGTCCT	.	155.0	39.0	114.0	0.0	.	88	.	.	Atlas-SNP
OR14C36	127066	hgsc.bcm.edu	hg19	1	248512548	248512548	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	OR14C36	NM_001001918	exon1	c.A472T	p.T158S	ATGCACACTGGCA	.	51.0	13.0	37.0	0.0	.	113	.	.	Atlas-SNP
SPTBN1	6711	hgsc.bcm.edu	hg19	2	54873140	54873140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	SPTBN1	NM_003128	exon22	c.A4570G	p.I1524V	CTGTTAATAAAGA	.	84.0	33.0	61.0	0.0	.	378	.	.	Atlas-SNP
SLC5A7	60482	hgsc.bcm.edu	hg19	2	108614395	108614395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	SLC5A7	NM_021815	exon5	c.G550T	p.V184L	TATTCTGTGGCCT	.	162.0	59.0	132.0	0.0	.	109	.	.	Atlas-SNP
SCN2A	6326	hgsc.bcm.edu	hg19	2	166210790	166210790	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	SCN2A	NM_001040143	exon16	c.T3008C	p.L1003P	ATAATCTCCAGAT	.	179.0	70.0	157.0	0.0	.	589	.	.	Atlas-SNP
TLK1	9874	hgsc.bcm.edu	hg19	2	171863315	171863315	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	TLK1	NM_012290	exon16	c.A1593T	p.T531T	CGTATCTGTATCC	.	135.0	48.0	92.0	0.0	.	134	.	.	Atlas-SNP
MAP2	4133	hgsc.bcm.edu	hg19	2	210560650	210560650	+	Silent	SNP	A	A	T	rs185809016	by1000genomes;alternate_allele	TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	MAP2	NM_002374	exon7	c.A3756T	p.S1252S	CCGCTCAGACACC	.	108.0	49.0	85.0	0.0	.	372	.	A|0.997;C|0.003	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	hg19	2	215823030	215823030	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	ABCA12	NM_173076	exon41	c.T6088A	p.Y2030N	CCCAGTAGCATGT	.	141.0	45.0	83.0	0.0	.	368	.	.	Atlas-SNP
TRIP12	9320	hgsc.bcm.edu	hg19	2	230638898	230638898	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	TRIP12	NM_004238	exon37	c.C5384G	p.T1795S	GGCAGAGTGAAAT	.	105.0	42.0	74.0	0.0	.	207	.	.	Atlas-SNP
DGKD	8527	hgsc.bcm.edu	hg19	2	234299052	234299052	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	DGKD	NM_152879	exon3	c.A271G	p.I91V	TAGTCAATCATAT	.	95.0	43.0	75.0	0.0	.	106	.	.	Atlas-SNP
SETMAR	6419	hgsc.bcm.edu	hg19	3	4354838	4354838	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	SETMAR	NM_001243723	exon2	c.A413C	p.Q138P	GTCTACAGTTCCA	.	98.0	29.0	74.0	0.0	.	30	.	.	Atlas-SNP
NBEAL2	23218	hgsc.bcm.edu	hg19	3	47044767	47044767	+	Silent	SNP	C	C	T	rs201985571	bycluster	TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	NBEAL2	NM_015175	exon35	c.C5688T	p.L1896L	CCAGCTCGGCGAG	.	122.0	41.0	95.0	0.0	.	267	.	C|0.998;T|0.002	Atlas-SNP
MITF	4286	hgsc.bcm.edu	hg19	3	69788758	69788758	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	MITF	NM_198159	exon1	c.G10T	p.E4X	CAGTCCGAATCGG	.	86.0	20.0	73.0	0.0	.	156	.	.	Atlas-SNP
CASR	846	hgsc.bcm.edu	hg19	3	121976018	121976018	+	Silent	SNP	G	G	T	rs201013419	alternate_allele	TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	CASR	NM_001178065	exon3	c.G276T	p.T92T	CTTGACGCTGGGA	.	150.0	44.0	103.0	0.0	.	190	.	G|0.999;A|0.001	Atlas-SNP
RTP2	344892	hgsc.bcm.edu	hg19	3	187416345	187416345	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	RTP2	NM_001004312	exon2	c.T619A	p.S207T	AGAGAGAGGCCCA	.	112.0	38.0	75.0	0.0	.	38	.	.	Atlas-SNP
RGS12	6002	hgsc.bcm.edu	hg19	4	3318367	3318367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	RGS12	NM_002926	exon2	c.G470T	p.C157F	GCCTTTGTGCGAG	.	87.0	4.0	50.0	0.0	.	128	.	.	Atlas-SNP
GABRG1	2565	hgsc.bcm.edu	hg19	4	46067562	46067562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	GABRG1	NM_173536	exon4	c.G361T	p.D121Y	GACTGTCAAACCA	.	70.0	18.0	62.0	0.0	.	172	.	.	Atlas-SNP
PAICS	10606	hgsc.bcm.edu	hg19	4	57325638	57325638	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	PAICS	NM_001079525	exon10	c.A1233T	p.A411A	GCGAGCAAGCATT	.	232.0	78.0	153.0	0.0	.	21	.	.	Atlas-SNP
UGT2B7	7364	hgsc.bcm.edu	hg19	4	69962793	69962793	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	UGT2B7	NM_001074	exon1	c.A555G	p.G185G	TAGTGGAGGATTT	.	146.0	54.0	107.0	0.0	.	79	.	.	Atlas-SNP
FABP2	2169	hgsc.bcm.edu	hg19	4	120241841	120241841	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	FABP2	NM_000134	exon2	c.A224T	p.D75V	GTTCCGTCTGCTA	.	35.0	12.0	36.0	0.0	.	21	.	.	Atlas-SNP
INPP4B	8821	hgsc.bcm.edu	hg19	4	143324209	143324209	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	INPP4B	NM_003866	exon9	c.256-2A>T	.	GTTCCCTGTAACA	.	83.0	29.0	68.0	0.0	.	132	.	.	Atlas-SNP
FRG1	2483	hgsc.bcm.edu	hg19	4	190878604	190878604	+	Missense_Mutation	SNP	G	G	A	rs371189769		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	FRG1	NM_004477	exon6	c.G484A	p.A162T	AATGAAGCAGGGG	.	265.0	16.0	204.0	0.0	.	76	.	.	Atlas-SNP
NKD2	85409	hgsc.bcm.edu	hg19	5	1034416	1034416	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	NKD2	NM_001271082	exon6	c.T397A	p.F133I	TATGACTTTGACA	.	95.0	25.0	88.0	0.0	.	39	.	.	Atlas-SNP
TERT	7015	hgsc.bcm.edu	hg19	5	1266629	1266629	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	TERT	NM_001193376	exon10	c.T2604C	p.D868D	GAAATCATCCACC	.	144.0	58.0	127.0	0.0	.	2594	.	.	Atlas-SNP
CTNND2	1501	hgsc.bcm.edu	hg19	5	11098730	11098730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	CTNND2	NM_001332	exon15	c.G2594T	p.G865V	GCCGCCCCTTCCA	.	86.0	4.0	64.0	0.0	.	289	.	.	Atlas-SNP
ITGA1	3672	hgsc.bcm.edu	hg19	5	52235677	52235677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	ITGA1	NM_181501	exon26	c.A3188G	p.N1063S	ACTGCAATACATG	.	265.0	77.0	186.0	0.0	.	112	.	.	Atlas-SNP
ESM1	11082	hgsc.bcm.edu	hg19	5	54277844	54277844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	ESM1	NM_007036	exon2	c.C432A	p.N144K	AAATCTGTTGGAA	.	138.0	48.0	99.0	0.0	.	27	.	.	Atlas-SNP
KDM3B	51780	hgsc.bcm.edu	hg19	5	137753199	137753199	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	KDM3B	NM_016604	exon13	c.A3335T	p.H1112L	TGGTACATGCTGC	.	110.0	5.0	75.0	0.0	.	177	.	.	Atlas-SNP
PCDHA12	56137	hgsc.bcm.edu	hg19	5	140255480	140255480	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	PCDHA12	NM_018903	exon1	c.T423A	p.P141P	GGTACCTGTTTCT	.	219.0	75.0	169.0	0.0	.	196	.	.	Atlas-SNP
PCDHA13	56136	hgsc.bcm.edu	hg19	5	140262777	140262777	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	PCDHA13	NM_031865	exon1	c.A924T	p.L308L	CAAACTAGATTTC	.	143.0	51.0	130.0	0.0	.	213	.	.	Atlas-SNP
PCDHAC2	56134	hgsc.bcm.edu	hg19	5	140348697	140348697	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	PCDHAC2	NM_031883	exon1	c.A2346G	p.R782R	AGTTCGAGGGAAT	.	146.0	50.0	101.0	0.0	.	142	.	.	Atlas-SNP
PCDHB16	57717	hgsc.bcm.edu	hg19	5	140564018	140564018	+	Missense_Mutation	SNP	G	G	T	rs146665935	byfrequency;alternate_allele	TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	PCDHB16	NM_020957	exon1	c.G1884T	p.R628S	CGCCAGGCTGCTG	.	65.0	18.0	50.0	0.0	.	159	.	G|0.999;A|0.001	Atlas-SNP
PCDH12	51294	hgsc.bcm.edu	hg19	5	141334585	141334585	+	Silent	SNP	G	G	A	rs375930414		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	PCDH12	NM_016580	exon1	c.C2832T	p.A944A	CCGCTCGGCGAAG	.	78.0	22.0	94.0	0.0	.	133	.	.	Atlas-SNP
DPYSL3	1809	hgsc.bcm.edu	hg19	5	146780396	146780396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	DPYSL3,NS,carcinoma,0,1	DPYSL3	NM_001197294	exon10	c.C1311A	p.S437R	ATCCCCGCTGGCA	.	60.0	12.0	45.0	1.0	.	58	.	.	Atlas-SNP
GABRG2	2566	hgsc.bcm.edu	hg19	5	161580332	161580332	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	GABRG2	NM_198903	exon11	c.C1506G	p.C502W	CTTCTGCCTGTTT	.	147.0	40.0	120.0	0.0	.	142	.	.	Atlas-SNP
IRF4	3662	hgsc.bcm.edu	hg19	6	393256	393256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	IRF4	NM_001195286	exon2	c.G104A	p.G35D	ACAGCGGCAAGTA	.	260.0	84.0	214.0	0.0	.	65	.	.	Atlas-SNP
PHF1	5252	hgsc.bcm.edu	hg19	6	33382581	33382581	+	Missense_Mutation	SNP	C	C	T	rs201507218	bycluster;by1000genomes;alternate_allele	TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	PHF1	NM_024165	exon11	c.C1024T	p.P342S	GAGCCCCCTACTG	.	73.0	18.0	61.0	0.0	.	42	.	C|1.000;G|0.000	Atlas-SNP
PTCHD4	442213	hgsc.bcm.edu	hg19	6	47976781	47976781	+	Missense_Mutation	SNP	G	G	C	rs375811446	alternate_allele	TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	.	NM_001013732	exon2	c.C496G	p.R166G	TGACCCGCTGATC	.	100.0	41.0	68.0	0.0	.	.	.	.	Atlas-SNP
B3GAT2	135152	hgsc.bcm.edu	hg19	6	71603943	71603943	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	B3GAT2	NM_080742	exon2	c.T624A	p.P208P	GCCCACAGGCCAG	.	238.0	72.0	183.0	0.0	.	33	.	.	Atlas-SNP
PHIP	55023	hgsc.bcm.edu	hg19	6	79679818	79679818	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	PHIP	NM_017934	exon26	c.G3070C	p.A1024P	GAAAAGCAAGTTT	.	120.0	37.0	95.0	0.0	.	177	.	.	Atlas-SNP
COL28A1	340267	hgsc.bcm.edu	hg19	7	7412740	7412740	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	COL28A1,colon,carcinoma,0,1	COL28A1	NM_001037763	exon32	c.G2797C	p.G933R	CCACCCCTATCAC	.	152.0	34.0	92.0	1.0	.	113	.	.	Atlas-SNP
NXPH1	30010	hgsc.bcm.edu	hg19	7	8791265	8791265	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	NXPH1	NM_152745	exon3	c.T682A	p.S228T	CATGTATCCTGGC	.	345.0	16.0	171.0	0.0	.	42	.	.	Atlas-SNP
BZW2	28969	hgsc.bcm.edu	hg19	7	16720989	16720989	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	BZW2	NM_014038	exon4	c.C299A	p.S100X	TGTTTTCAGCAAA	.	102.0	28.0	72.0	0.0	.	35	.	.	Atlas-SNP
PDE1C	5137	hgsc.bcm.edu	hg19	7	31887658	31887658	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	PDE1C	NM_001191058	exon10	c.T1084G	p.L362V	CACTTAAATGGTG	.	110.0	18.0	92.0	0.0	.	465	.	.	Atlas-SNP
ZNF679	168417	hgsc.bcm.edu	hg19	7	63726440	63726440	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	ZNF679	NM_153363	exon5	c.A429T	p.E143D	TAATGAAGTTAAC	.	337.0	79.0	172.0	0.0	.	80	.	.	Atlas-SNP
CD36	948	hgsc.bcm.edu	hg19	7	80302699	80302699	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	CD36	NM_001127444	exon11	c.A1228C	p.I410L	AACTATATTGTGC	.	352.0	23.0	141.0	0.0	.	185	.	.	Atlas-SNP
SEMA3A	10371	hgsc.bcm.edu	hg19	7	83610774	83610774	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	SEMA3A	NM_006080	exon14	c.A1515G	p.S505S	AGCCGTTGAACCA	.	203.0	9.0	88.0	0.0	.	121	.	.	Atlas-SNP
KIAA1324L	222223	hgsc.bcm.edu	hg19	7	86574266	86574266	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	KIAA1324L	NM_001142749	exon4	c.T603A	p.Y201X	GAAGACATAGCCT	.	427.0	117.0	269.0	0.0	.	225	.	.	Atlas-SNP
SGCE	8910	hgsc.bcm.edu	hg19	7	94259029	94259029	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	SGCE	NM_001099400	exon3	c.232+2T>C	.	GAACATACCAGGT	.	476.0	233.0	256.0	0.0	.	68	.	.	Atlas-SNP
LMTK2	22853	hgsc.bcm.edu	hg19	7	97770825	97770825	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	LMTK2	NM_014916	exon3	c.A348T	p.P116P	ACTCCCAGCTCCC	.	158.0	27.0	97.0	0.0	.	228	.	.	Atlas-SNP
SLC37A3	84255	hgsc.bcm.edu	hg19	7	140055481	140055481	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	SLC37A3	NM_207113	exon7	c.A605T	p.Q202L	CCATACTGAAGAA	.	160.0	29.0	64.0	0.0	.	80	.	.	Atlas-SNP
UBE3C	9690	hgsc.bcm.edu	hg19	7	156932031	156932031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	UBE3C	NM_014671	exon1	c.A65G	p.K22R	GCAGGAAGGTGAG	.	44.0	9.0	32.0	0.0	.	124	.	.	Atlas-SNP
NEFM	4741	hgsc.bcm.edu	hg19	8	24775019	24775019	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	NEFM	NM_005382	exon3	c.G1651C	p.G551R	GAAGAGGGAGGAT	.	179.0	58.0	149.0	0.0	.	115	.	.	Atlas-SNP
ST18	9705	hgsc.bcm.edu	hg19	8	53055540	53055540	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	ST18	NM_014682	exon17	c.A2118T	p.P706P	AGGGCTTGGTATA	.	118.0	42.0	85.0	0.0	.	212	.	.	Atlas-SNP
STAU2	27067	hgsc.bcm.edu	hg19	8	74464277	74464277	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	STAU2	NM_001164380	exon13	c.G1500T	p.L500L	ATATTCCAGTTGT	.	236.0	20.0	163.0	0.0	.	148	.	.	Atlas-SNP
PLEC	5339	hgsc.bcm.edu	hg19	8	145001727	145001727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	PLEC	NM_201380	exon27	c.G4018A	p.E1340K	GTTGCTCGAGCTC	.	48.0	17.0	26.0	0.0	.	1144	.	.	Atlas-SNP
RFK	55312	hgsc.bcm.edu	hg19	9	79002393	79002393	+	Silent	SNP	T	T	A	rs188158713	by1000genomes;alternate_allele	TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	RFK	NM_018339	exon4	c.A390T	p.L130L	TAACTCTAGTCGT	.	52.0	18.0	34.0	0.0	.	13	.	T|1.000;C|0.000	Atlas-SNP
DENND1A	57706	hgsc.bcm.edu	hg19	9	126439003	126439003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	DENND1A	NM_024820	exon6	c.G368T	p.R123I	ACCTGTCTTTTTG	.	92.0	34.0	60.0	0.0	.	112	.	.	Atlas-SNP
GTF3C5	9328	hgsc.bcm.edu	hg19	9	135929323	135929323	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	GTF3C5	NM_012087	exon6	c.A982C	p.K328Q	GGAATGAAACACG	.	135.0	49.0	109.0	0.0	.	46	.	.	Atlas-SNP
ITIH5	80760	hgsc.bcm.edu	hg19	10	7627891	7627891	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	ITIH5	NM_001001851	exon8	c.T1081A	p.Y361N	GAATGTACACTTT	.	141.0	48.0	103.0	0.0	.	343	.	.	Atlas-SNP
TRDMT1	1787	hgsc.bcm.edu	hg19	10	17191063	17191063	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	TRDMT1	NM_004412	exon11	c.A1152G	p.K384K	GATTAGTTTAGCT	.	61.0	21.0	52.0	0.0	.	46	.	.	Atlas-SNP
FZD8	8325	hgsc.bcm.edu	hg19	10	35930122	35930122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	FZD8	NM_031866	exon1	c.A236G	p.Q79R	GAGCACTGGATCT	.	86.0	24.0	53.0	0.0	.	41	.	.	Atlas-SNP
GPRIN2	9721	hgsc.bcm.edu	hg19	10	46998926	46998926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	GPRIN2	NM_014696	exon3	c.C46T	p.P16S	CTGAGCCCCCGCC	.	109.0	11.0	104.0	0.0	.	94	.	.	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	hg19	10	73560473	73560473	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	CDH23	NM_022124	exon51	c.T7443A	p.P2481P	CAACCCTGGGGAT	.	93.0	35.0	69.0	0.0	.	365	.	.	Atlas-SNP
ENTPD7	57089	hgsc.bcm.edu	hg19	10	101439111	101439111	+	Silent	SNP	C	C	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	ENTPD7	NM_020354	exon4	c.C285G	p.S95S	TGGTTCCCGGATT	.	164.0	51.0	126.0	0.0	.	44	.	.	Atlas-SNP
PWWP2B	170394	hgsc.bcm.edu	hg19	10	134219298	134219298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	PWWP2B,colon,carcinoma,0,1	PWWP2B	NM_001098637	exon2	c.A1294G	p.R432G	GAGGCCAGATCGT	.	44.0	16.0	32.0	0.0	.	33	.	.	Atlas-SNP
FUOM	282969	hgsc.bcm.edu	hg19	10	135169315	135169315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	.	NM_001098483	exon5	c.A325G	p.R109G	GGGCTCTCTGGAA	.	89.0	32.0	77.0	0.0	.	.	.	.	Atlas-SNP
PDDC1	347862	hgsc.bcm.edu	hg19	11	770992	770992	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	PDDC1	NM_182612	exon8	c.656+1G>T	.	CCCTCACCGGCTG	.	66.0	26.0	60.0	0.0	.	16	.	.	Atlas-SNP
BBOX1	8424	hgsc.bcm.edu	hg19	11	27114795	27114795	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	BBOX1	NM_003986	exon5	c.A415T	p.K139X	GCATACAAGTGGC	.	176.0	60.0	145.0	0.0	.	46	.	.	Atlas-SNP
MYBPC3	4607	hgsc.bcm.edu	hg19	11	47361216	47361216	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	MYBPC3	NM_000256	exon20	c.A2053T	p.K685X	TAGCCTTCTGCCA	.	82.0	39.0	82.0	0.0	.	102	.	.	Atlas-SNP
GANAB	23193	hgsc.bcm.edu	hg19	11	62402314	62402314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	GANAB,NS,carcinoma,0,1	GANAB	NM_198334	exon5	c.A539G	p.H180R	CTCTGATGCTCAA	.	122.0	48.0	87.0	0.0	.	110	.	.	Atlas-SNP
SLC2A3	6515	hgsc.bcm.edu	hg19	12	8085600	8085600	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	SLC2A3	NM_006931	exon3	c.C252T	p.F84F	GTTGACGAAGAGT	.	174.0	65.0	114.0	0.0	.	83	.	.	Atlas-SNP
KLRC2	3822	hgsc.bcm.edu	hg19	12	10588437	10588437	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	KLRC2	NM_002260	exon1	c.T149A	p.L50Q	TGATTCAGGGAAG	.	115.0	38.0	94.0	0.0	.	29	.	.	Atlas-SNP
GYS2	2998	hgsc.bcm.edu	hg19	12	21713357	21713357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	GYS2	NM_021957	exon8	c.G1132A	p.E378K	GGGTTTCCACGTT	.	81.0	7.0	68.0	0.0	.	110	.	.	Atlas-SNP
HOXC11	3227	hgsc.bcm.edu	hg19	12	54367150	54367150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	HOXC11	NM_014212	exon1	c.C125A	p.P42H	ACATGCCCGAGTT	.	91.0	30.0	60.0	0.0	.	32	.	.	Atlas-SNP
PTPRQ	374462	hgsc.bcm.edu	hg19	12	80928788	80928788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	PTPRQ	NM_001145026	exon16	c.A2441G	p.Y814C	TTTATTACAGAAA	.	232.0	67.0	156.0	0.0	.	119	.	.	Atlas-SNP
NUP37	79023	hgsc.bcm.edu	hg19	12	102512230	102512230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	NUP37,NS,carcinoma,0,1	NUP37	NM_024057	exon1	c.G67A	p.E23K	TAAATTCTACCAC	.	109.0	27.0	74.0	0.0	.	26	.	.	Atlas-SNP
PITPNM2	57605	hgsc.bcm.edu	hg19	12	123472076	123472076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	PITPNM2	NM_020845	exon21	c.C3245A	p.P1082H	TTGATAGGGTAGA	.	98.0	4.0	79.0	0.0	.	105	.	.	Atlas-SNP
GJB6	10804	hgsc.bcm.edu	hg19	13	20797574	20797574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	GJB6	NM_001110220	exon4	c.C46T	p.H16Y	TGGAGTGTTTGTT	.	116.0	33.0	71.0	0.0	.	33	.	.	Atlas-SNP
SERPINE3	647174	hgsc.bcm.edu	hg19	13	51936118	51936118	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	SERPINE3	NM_001101320	exon7	c.T1260C	p.N420N	CAAAAATAAGCAT	.	192.0	9.0	142.0	0.0	.	37	.	.	Atlas-SNP
ACIN1	22985	hgsc.bcm.edu	hg19	14	23548222	23548222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	ACIN1	NM_001164814	exon7	c.A1988G	p.D663G	CTGCTGTCCCTGG	.	94.0	32.0	66.0	0.0	.	147	.	.	Atlas-SNP
PTGR2	145482	hgsc.bcm.edu	hg19	14	74343770	74343770	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	PTGR2	NM_152444	exon5	c.T418A	p.S140T	TTGACTTCCTTGA	.	133.0	33.0	94.0	0.0	.	21	.	.	Atlas-SNP
TTLL5	23093	hgsc.bcm.edu	hg19	14	76135787	76135787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	TTLL5	NM_015072	exon3	c.G103A	p.G35S	ACTGGAGGCTGCA	.	122.0	11.0	77.0	0.0	.	102	.	.	Atlas-SNP
TTC7B	145567	hgsc.bcm.edu	hg19	14	91044612	91044612	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	TTC7B	NM_001010854	exon19	c.A2148T	p.T716T	ACAGGCTGTGGCT	.	141.0	48.0	94.0	0.0	.	93	.	.	Atlas-SNP
INO80	54617	hgsc.bcm.edu	hg19	15	41313274	41313274	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	INO80	NM_017553	exon26	c.A3098T	p.Y1033F	CTTTCATATTCTG	.	59.0	18.0	57.0	0.0	.	122	.	.	Atlas-SNP
RPAP1	26015	hgsc.bcm.edu	hg19	15	41812892	41812892	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	RPAP1	NM_015540	exon22	c.G3492A	p.L1164L	GTCCACCAGGAAC	.	90.0	29.0	63.0	0.0	.	111	.	.	Atlas-SNP
VPS39	23339	hgsc.bcm.edu	hg19	15	42458405	42458405	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	VPS39,NS,carcinoma,0,2	VPS39	NM_015289	exon16	c.C1632G	p.F544L	GTAGGAGAAAATC	.	134.0	45.0	119.0	0.0	.	53	.	.	Atlas-SNP
SEMA6D	80031	hgsc.bcm.edu	hg19	15	48055213	48055213	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	SEMA6D	NM_153617	exon9	c.A659T	p.E220V	TTTCAGAGCCACA	.	47.0	22.0	58.0	0.0	.	322	.	.	Atlas-SNP
SLCO3A1	28232	hgsc.bcm.edu	hg19	15	92647605	92647605	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	SLCO3A1	NM_013272	exon4	c.T842A	p.L281X	CCCTCTTGATGTT	.	64.0	18.0	50.0	0.0	.	84	.	.	Atlas-SNP
AXIN1	8312	hgsc.bcm.edu	hg19	16	347192	347192	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	AXIN1	NM_181050	exon7	c.A1819T	p.K607X	CCTTCTTGGCATT	.	13.0	6.0	14.0	0.0	.	290	.	.	Atlas-SNP
RAB26	25837	hgsc.bcm.edu	hg19	16	2203207	2203207	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	RAB26	NM_014353	exon8	c.T652C	p.F218L	TTGGCCTTCACAG	.	141.0	50.0	126.0	0.0	.	9	.	.	Atlas-SNP
USP7	7874	hgsc.bcm.edu	hg19	16	8989502	8989502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	USP7	NM_003470	exon27	c.A2916G	p.I972M	TACCTCTATTCGA	.	92.0	25.0	71.0	0.0	.	116	.	.	Atlas-SNP
MYO1C	4641	hgsc.bcm.edu	hg19	17	1384146	1384146	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	MYO1C	NM_001080779	exon6	c.C661G	p.L221V	CCAGGAGGTAACT	.	71.0	18.0	48.0	0.0	.	57	.	.	Atlas-SNP
MYH13	8735	hgsc.bcm.edu	hg19	17	10216060	10216060	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	MYH13	NM_003802	exon31	c.A4196T	p.Q1399L	AGCCTCTGGGCCA	.	99.0	28.0	56.0	0.0	.	533	.	.	Atlas-SNP
MYO18A	399687	hgsc.bcm.edu	hg19	17	27448104	27448104	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	MYO18A	NM_078471	exon6	c.T1497C	p.S499S	GCCACTACTGCCC	.	62.0	22.0	56.0	0.0	.	217	.	.	Atlas-SNP
ASIC2	40	hgsc.bcm.edu	hg19	17	31618817	31618817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	.	NM_183377	exon1	c.A317G	p.N106S	AAGCGGTTCGAGG	.	78.0	23.0	39.0	0.0	.	.	.	.	Atlas-SNP
KRT32	3882	hgsc.bcm.edu	hg19	17	39623382	39623382	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	KRT32	NM_002278	exon1	c.T196A	p.Y66N	ATAGATAGGTTTT	.	124.0	52.0	83.0	0.0	.	57	.	.	Atlas-SNP
KRT15	3866	hgsc.bcm.edu	hg19	17	39670928	39670928	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	KRT15	NM_002275	exon8	c.1248-2A>T	.	CCATCCTGAAAGA	.	98.0	34.0	94.0	0.0	.	60	.	.	Atlas-SNP
SPATA20	64847	hgsc.bcm.edu	hg19	17	48627450	48627450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	SPATA20	NM_022827	exon8	c.G967A	p.G323R	GCTAACGGGGGCA	.	52.0	20.0	42.0	0.0	.	59	.	.	Atlas-SNP
SDK2	54549	hgsc.bcm.edu	hg19	17	71429982	71429982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	SDK2	NM_001144952	exon10	c.G1201A	p.A401T	TAGGGGCGATGCC	.	90.0	25.0	72.0	0.0	.	219	.	.	Atlas-SNP
COLEC12	81035	hgsc.bcm.edu	hg19	18	335067	335067	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	COLEC12	NM_130386	exon6	c.C1491T	p.G497G	TTTGCCGCCACGC	.	71.0	32.0	53.0	0.0	.	121	.	.	Atlas-SNP
COLEC12	81035	hgsc.bcm.edu	hg19	18	346985	346985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	COLEC12	NM_130386	exon5	c.C637A	p.Q213K	GCACCTGGGTCAG	.	76.0	26.0	48.0	0.0	.	121	.	.	Atlas-SNP
ANKRD12	23253	hgsc.bcm.edu	hg19	18	9255216	9255216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	ANKRD12	NM_015208	exon9	c.A1951G	p.K651E	ACATTAAAAAAAC	.	397.0	125.0	264.0	0.0	.	167	.	.	Atlas-SNP
MOCOS	55034	hgsc.bcm.edu	hg19	18	33846710	33846710	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	MOCOS	NM_017947	exon14	c.2410-2A>T	.	CCTGCCAGGTTTT	.	91.0	4.0	62.0	0.0	.	84	.	.	Atlas-SNP
HAUS1	115106	hgsc.bcm.edu	hg19	18	43703316	43703316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	HAUS1	NM_138443	exon6	c.G652T	p.V218L	TCCTTAGTAGCAC	.	320.0	86.0	242.0	0.0	.	22	.	.	Atlas-SNP
HMSD	284293	hgsc.bcm.edu	hg19	18	61627540	61627540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	HMSD	NM_001123366	exon4	c.A371G	p.N124S	TCGATAATATTTT	.	158.0	75.0	105.0	0.0	.	16	.	.	Atlas-SNP
BRD4	23476	hgsc.bcm.edu	hg19	19	15355195	15355195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	BRD4	NM_058243	exon13	c.C2428T	p.P810S	GCTGGGGCTCCAG	.	75.0	28.0	56.0	0.0	.	172	.	.	Atlas-SNP
ZNF506	440515	hgsc.bcm.edu	hg19	19	19905366	19905366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	ZNF506	NM_001099269	exon4	c.A1330G	p.R444G	ATTATCTTATGCT	.	87.0	25.0	80.0	0.0	.	36	.	.	Atlas-SNP
ZNF714	148206	hgsc.bcm.edu	hg19	19	21300669	21300669	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	ZNF714	NM_182515	exon5	c.A1199T	p.E400V	GTGAAGAATGTGG	.	58.0	16.0	48.0	0.0	.	121	.	.	Atlas-SNP
CEACAM16	388551	hgsc.bcm.edu	hg19	19	45209000	45209000	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	CEACAM16	NM_001039213	exon5	c.G802C	p.G268R	TTCAACGGGCAGG	.	171.0	57.0	119.0	0.0	.	56	.	.	Atlas-SNP
TPRX1	284355	hgsc.bcm.edu	hg19	19	48305519	48305519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	TPRX1	NM_198479	exon2	c.T749C	p.L250P	GGGATCAGGCCTG	.	93.0	7.0	54.0	0.0	.	46	.	.	Atlas-SNP
TPRX1	284355	hgsc.bcm.edu	hg19	19	48305570	48305570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	TPRX1	NM_198479	exon2	c.G698T	p.G233V	TTCGGGCCTGAGA	.	75.0	6.0	70.0	0.0	.	46	.	.	Atlas-SNP
MYH14	79784	hgsc.bcm.edu	hg19	19	50766619	50766619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	MYH14	NM_001145809	exon22	c.G2636T	p.R879L	TGCAGCGGAACTG	.	117.0	44.0	99.0	0.0	.	261	.	.	Atlas-SNP
KLK7	5650	hgsc.bcm.edu	hg19	19	51485634	51485634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	KLK7	NM_001243126	exon2	c.C149A	p.A50D	GCAGGGGCAGGAG	.	61.0	16.0	42.0	0.0	.	40	.	.	Atlas-SNP
NLRP12	91662	hgsc.bcm.edu	hg19	19	54314495	54314495	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	NLRP12	NM_144687	exon3	c.C418T	p.R140C	CTTCCATGAGCCG	.	98.0	31.0	86.0	0.0	.	236	.	.	Atlas-SNP
SLC52A3	113278	hgsc.bcm.edu	hg19	20	746252	746252	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	.	NM_033409	exon2	c.T167G	p.L56R	ACCAGGAGGGGCC	.	211.0	134.0	83.0	0.0	.	.	.	.	Atlas-SNP
NKX2-4	644524	hgsc.bcm.edu	hg19	20	21377078	21377078	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	NKX2-4	NM_033176	exon2	c.T536G	p.L179R	GCGTGCAGCGGGC	.	78.0	39.0	38.0	0.0	.	7	.	.	Atlas-SNP
COX4I2	84701	hgsc.bcm.edu	hg19	20	30227900	30227900	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	COX4I2	NM_032609	exon3	c.T247A	p.L83M	GTGGCCTGTAAGT	.	1684.0	344.0	873.0	0.0	.	18	.	.	Atlas-SNP
TOP1	7150	hgsc.bcm.edu	hg19	20	39709835	39709835	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	TOP1	NM_003286	exon7	c.A462G	p.T154T	TAAAACAGAAGAT	.	498.0	84.0	175.0	0.0	.	71	.	.	Atlas-SNP
SYCP2	10388	hgsc.bcm.edu	hg19	20	58468254	58468254	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	SYCP2	NM_014258	exon21	c.G1736C	p.S579T	AGTTCACCTAAAT	.	91.0	5.0	43.0	0.0	.	204	.	.	Atlas-SNP
BAGE3	85318	hgsc.bcm.edu	hg19	21	11058295	11058295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	.	NM_182481	exon3	c.C145A	p.P49T	ATAGTGGCTCCAA	.	334.0	18.0	281.0	0.0	.	.	.	.	Atlas-SNP
TMPRSS15	5651	hgsc.bcm.edu	hg19	21	19666622	19666622	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	TMPRSS15	NM_002772	exon21	c.T2451A	p.S817R	CCAGTCACTGCTG	.	85.0	31.0	75.0	0.0	.	189	.	.	Atlas-SNP
SMARCB1	6598	hgsc.bcm.edu	hg19	22	24135767	24135767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	SMARCB1	NM_003073	exon3	c.C254A	p.A85D	CTCTAGCCACCAG	.	73.0	38.0	87.0	0.0	.	586	.	.	Atlas-SNP
NF2	4771	hgsc.bcm.edu	hg19	22	30035159	30035159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	NF2	NM_000268	exon3	c.G321T	p.E107D	TGAAGAGGAGCTG	.	80.0	47.0	81.0	0.0	.	1312	.	.	Atlas-SNP
NF2	4771	hgsc.bcm.edu	hg19	22	30035160	30035160	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	NF2	NM_000268	exon3	c.G322T	p.E108X	GAAGAGGAGCTGG	.	77.0	46.0	79.0	0.0	.	1312	.	.	Atlas-SNP
WNT7B	7477	hgsc.bcm.edu	hg19	22	46327010	46327010	+	Missense_Mutation	SNP	T	T	A	rs200797257	by1000genomes;alternate_allele	TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	WNT7B	NM_058238	exon3	c.A538T	p.M180L	GGTTCATGAGGCG	.	12.0	7.0	19.0	0.0	.	45	.	T|1.000;C|0.000	Atlas-SNP
IQSEC2	23096	hgsc.bcm.edu	hg19	X	53272572	53272572	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	IQSEC2	NM_001111125	exon9	c.A2831T	p.N944I	TCATCGTTGGTCC	.	66.0	50.0	46.0	0.0	.	195	.	.	Atlas-SNP
EDA	1896	hgsc.bcm.edu	hg19	X	69255445	69255445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	EDA	NM_001399	exon8	c.G1162T	p.A388S	GGTGAAGCCCCTG	.	66.0	39.0	53.0	0.0	.	61	.	.	Atlas-SNP
ATG4A	115201	hgsc.bcm.edu	hg19	X	107381369	107381369	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	ATG4A	NM_052936	exon9	c.A762T	p.L254F	GTCTTTAGGGGCA	.	198.0	54.0	125.0	0.0	.	68	.	.	Atlas-SNP
MCF2	4168	hgsc.bcm.edu	hg19	X	138733894	138733894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	MCF2	NM_001171876	exon2	c.A10G	p.I4V	AGGCGATGTCTTG	.	429.0	313.0	317.0	2.0	.	432	.	.	Atlas-SNP
ARL13B	200894	hgsc.bcm.edu	hg19	3	93755562	93755562	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	ARL13B	NM_001174150	exon5	c.652delG	p.E218fs	.	.	486.0	166.0	341.0	0.0	.	52	.	.	Atlas-INDEL
A2ML1	144568	hgsc.bcm.edu	hg19	12	8998818	8998818	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	A2ML1	NM_144670	exon14	c.1682delA	p.Q561fs	.	.	132.0	47.0	100.0	0.0	.	199	.	.	Atlas-INDEL
KIAA1199	57214	hgsc.bcm.edu	hg19	15	81225646	81225646	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	KIAA1199	NM_018689	exon22	c.2853delT	p.D951fs	.	.	156.0	41.0	128.0	0.0	.	118	.	.	Atlas-INDEL
DHX35	60625	hgsc.bcm.edu	hg19	20	37597805	37597806	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	DHX35	NM_021931	exon2	c.122_123insT	p.P41fs	.	.	156.0	23.0	82.0	0.0	.	82	.	.	Atlas-INDEL
ZBTB44	29068	hgsc.bcm.edu	hg19	11	130131553	130131587	+	Frame_Shift_Del	DEL	CAACACATTCTTGTTCTCATCCTCGGCTTGGCCTA	CAACACATTCTTGTTCTCATCCTCGGCTTGGCCTA	-	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	CAACACATTCTTGTTCTCATCCTCGGCTTGGCCTA	CAACACATTCTTGTTCTCATCCTCGGCTTGGCCTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	ZBTB44	NM_014155	exon2	c.183_217del	p.61_73del	.	.	142.0	12.0	111.0	0.0	.	41	.	.	Atlas-INDEL
KIAA0947	23379	hgsc.bcm.edu	hg19	5	5462373	5462374	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	KIAA0947	NM_015325	exon13	c.2926_2927insCA	p.A976fs	.	.	128.0	39.0	103.0	0.0	.	301	.	.	Atlas-INDEL
SLC6A13	6540	hgsc.bcm.edu	hg19	12	351921	351936	+	Frame_Shift_Del	DEL	CTGCGGGGAAACTGCA	CTGCGGGGAAACTGCA	-	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	CTGCGGGGAAACTGCA	CTGCGGGGAAACTGCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	SLC6A13	NM_016615	exon4	c.338_338del	p.113_113del	.	.	58.0	19.0	54.0	0.0	.	62	.	.	Atlas-INDEL
FRYL	285527	hgsc.bcm.edu	hg19	4	48542570	48542570	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AADS-01A-11D-A40R-10	TCGA-DD-AADS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7d7b0cb1-f476-4c50-91ab-d79564809fb8	7d48f285-d87c-41ed-881c-9dd20e9953dc	.	FRYL	NM_015030	exon46	c.6096delT	p.H2032fs	.	.	149.0	50.0	135.0	0.0	.	242	.	.	Atlas-INDEL
