Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
KIF17	57576	hgsc.bcm.edu	hg19	1	21011489	21011489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	KIF17	NM_001122819	exon10	c.G2044T	p.A682S	CTAAGGCCACTTC	.	151.0	50.0	193.0	0.0	.	130	.	.	Atlas-SNP
DOCK7	85440	hgsc.bcm.edu	hg19	1	62923216	62923216	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	DOCK7	NM_001271999	exon48	c.T6340G	p.C2114G	TGTGGCAGGTGAC	.	87.0	31.0	112.0	0.0	.	184	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152277558	152277558	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	FLG	NM_002016	exon3	c.A9804T	p.A3268A	GCGGTCTGCAGAG	.	103.0	41.0	120.0	0.0	.	900	.	.	Atlas-SNP
NOS1AP	9722	hgsc.bcm.edu	hg19	1	162302830	162302830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	NOS1AP	NM_014697	exon5	c.C368A	p.S123Y	ATGATTCCCAAGA	.	145.0	27.0	126.0	0.0	.	139	.	.	Atlas-SNP
AXDND1	126859	hgsc.bcm.edu	hg19	1	179497542	179497542	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	AXDND1	NM_144696	exon23	c.T2691A	p.F897L	TCTATTTGAAACA	.	102.0	20.0	86.0	0.0	.	142	.	.	Atlas-SNP
FAM5C	339479	hgsc.bcm.edu	hg19	1	190195446	190195446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	FAM5C	NM_199051	exon6	c.C727A	p.L243I	CTTGAAGCCCTTG	.	78.0	56.0	77.0	0.0	.	343	.	.	Atlas-SNP
RGS18	64407	hgsc.bcm.edu	hg19	1	192127859	192127859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	RGS18	NM_130782	exon1	c.A92G	p.E31G	GAAAAGAAGAAAC	.	1014.0	225.0	818.0	0.0	.	54	.	.	Atlas-SNP
TPO	7173	hgsc.bcm.edu	hg19	2	1437364	1437364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	TPO	NM_175719	exon4	c.T334C	p.S112P	CAACAATCACAGC	.	226.0	66.0	290.0	0.0	.	224	.	.	Atlas-SNP
MYT1L	23040	hgsc.bcm.edu	hg19	2	1844609	1844609	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	MYT1L	NM_015025	exon20	c.A2775T	p.S925S	GCAACCTGAAAGG	.	44.0	13.0	57.0	0.0	.	241	.	.	Atlas-SNP
DTNB	1838	hgsc.bcm.edu	hg19	2	25656837	25656837	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	DTNB	NM_021907	exon13	c.A1285T	p.N429Y	CAAAGTTAAAGCT	.	100.0	36.0	135.0	0.0	.	43	.	.	Atlas-SNP
SLC8A1	6546	hgsc.bcm.edu	hg19	2	40656383	40656383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	SLC8A1,NS,carcinoma,0,1	SLC8A1	NM_001252624	exon1	c.A1038G	p.I346M	TAATTCTATTAAT	.	113.0	62.0	101.0	1.0	.	221	.	.	Atlas-SNP
PCBP1	5093	hgsc.bcm.edu	hg19	2	70314990	70314990	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	PCBP1	NM_006196	exon1	c.A115C	p.I39L	AAGAGGATCCGCG	.	222.0	58.0	169.0	0.0	.	28	.	.	Atlas-SNP
POTEF	728378	hgsc.bcm.edu	hg19	2	130832582	130832582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	POTEF	NM_001099771	exon17	c.G2463T	p.Q821H	CATGATCTGGGTC	.	251.0	143.0	196.0	1.0	.	140	.	.	Atlas-SNP
ACVR2A	92	hgsc.bcm.edu	hg19	2	148674942	148674942	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	ACVR2A,caecum,carcinoma,0,1	ACVR2A	NM_001616	exon6	c.C763T	p.R255X	GAAAAACGAGGCA	.	294.0	80.0	265.0	0.0	.	125	.	.	Atlas-SNP
RAD18	56852	hgsc.bcm.edu	hg19	3	8988966	8988966	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	RAD18	NM_020165	exon4	c.A204T	p.T68T	CGGCTCTGTGACA	.	138.0	33.0	136.0	0.0	.	52	.	.	Atlas-SNP
ATP2B2	491	hgsc.bcm.edu	hg19	3	10392219	10392219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	ATP2B2	NM_001001331	exon15	c.G2179T	p.V727F	TGCGGACCGTGAT	.	44.0	27.0	41.0	0.0	.	304	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266124	41266124	+	Missense_Mutation	SNP	A	A	G	rs121913412	bycluster	TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	CTNNB1,gallbladder,other,0,1	CTNNB1	NM_001098209	exon3	c.A121G	p.T41A	GCCACTACCACAG	.	167.0	97.0	177.0	0.0	.	4904	.	.	Atlas-SNP
LAMB2	3913	hgsc.bcm.edu	hg19	3	49161489	49161489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	LAMB2	NM_002292	exon24	c.C3469T	p.R1157C	TGAAGCGGTGACA	.	55.0	12.0	43.0	0.0	.	156	.	.	Atlas-SNP
SLC9C1	285335	hgsc.bcm.edu	hg19	3	111993747	111993747	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	.	NM_183061	exon6	c.T610A	p.L204I	TACCTAAGGTATG	.	286.0	92.0	309.0	0.0	.	.	.	.	Atlas-SNP
SEC61A1	29927	hgsc.bcm.edu	hg19	3	127788431	127788431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	SEC61A1	NM_013336	exon12	c.A1357G	p.I453V	GTCACAATCATCT	.	73.0	44.0	88.0	0.0	.	39	.	.	Atlas-SNP
MBD4	8930	hgsc.bcm.edu	hg19	3	129150366	129150366	+	Missense_Mutation	SNP	T	T	A	rs370417942		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	MBD4	NM_003925	exon8	c.A1721T	p.H574L	TTTTCATGATTTT	.	57.0	6.0	63.0	0.0	.	53	.	.	Atlas-SNP
UBA5	79876	hgsc.bcm.edu	hg19	3	132389819	132389819	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	UBA5	NM_024818	exon6	c.T505G	p.L169V	GGTGGGTTAGAAG	.	122.0	61.0	107.0	0.0	.	33	.	.	Atlas-SNP
GC	2638	hgsc.bcm.edu	hg19	4	72649749	72649749	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	GC	NM_001204307	exon2	c.T44A	p.L15H	CCAGAGAGTCTTG	.	257.0	91.0	373.0	0.0	.	132	.	.	Atlas-SNP
ALB	213	hgsc.bcm.edu	hg19	4	74275109	74275109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	ALB	NM_000477	exon5	c.T520C	p.Y174H	TACTTTTATGCCC	.	184.0	66.0	307.0	0.0	.	132	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	hg19	4	88533640	88533640	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	DSPP	NM_014208	exon4	c.A302T	p.N101I	TAGCAAACGAAGA	.	328.0	123.0	449.0	0.0	.	174	.	.	Atlas-SNP
ADH1A	124	hgsc.bcm.edu	hg19	4	100201407	100201407	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	ADH1A	NM_000667	exon7	c.A858G	p.A286A	GCCACATGCCTCA	.	80.0	22.0	137.0	0.0	.	49	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155411056	155411056	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	DCHS2	NM_001142552	exon1	c.C1452T	p.G484G	TGGGGGGCCGCCG	.	51.0	24.0	53.0	0.0	.	594	.	.	Atlas-SNP
WDR17	116966	hgsc.bcm.edu	hg19	4	177056301	177056301	+	Missense_Mutation	SNP	G	G	A	rs140987021		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	WDR17	NM_170710	exon9	c.G1213A	p.D405N	CCTGACGATCCTA	.	296.0	107.0	341.0	0.0	.	198	.	G|1.000;A|0.000	Atlas-SNP
ZFP42	132625	hgsc.bcm.edu	hg19	4	188924482	188924482	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	ZFP42	NM_174900	exon4	c.A521T	p.K174M	CTAGAAAGAAGCC	.	66.0	34.0	77.0	0.0	.	87	.	.	Atlas-SNP
ZCCHC9	84240	hgsc.bcm.edu	hg19	5	80604841	80604841	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	ZCCHC9	NM_001131036	exon4	c.A612G	p.K204K	TCCCAAAGGACTC	.	117.0	68.0	147.0	0.0	.	26	.	.	Atlas-SNP
PSD2	84249	hgsc.bcm.edu	hg19	5	139213348	139213348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	PSD2	NM_032289	exon8	c.G1331A	p.G444D	ATGATGGCCAAGA	.	111.0	30.0	78.0	0.0	.	88	.	.	Atlas-SNP
ZNF451	26036	hgsc.bcm.edu	hg19	6	56966810	56966810	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	ZNF451	NM_001257273	exon4	c.A1596C	p.K532N	CTCCAAAGGGGAT	.	114.0	38.0	182.0	0.0	.	181	.	.	Atlas-SNP
IKZF1	10320	hgsc.bcm.edu	hg19	7	50455094	50455094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	IKZF1	NM_006060	exon6	c.G641T	p.S214I	AGCGAAGCTCTTT	.	278.0	110.0	415.0	1.0	.	613	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82584094	82584094	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	PCLO	NM_014510	exon5	c.C6175G	p.L2059V	CATCTAGTAGTTT	.	75.0	27.0	90.0	0.0	.	1506	.	.	Atlas-SNP
SEMA3E	9723	hgsc.bcm.edu	hg19	7	83037763	83037763	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	SEMA3E	NM_012431	exon6	c.C591G	p.S197R	GTCTCTGCTCCAG	.	112.0	41.0	174.0	0.0	.	125	.	.	Atlas-SNP
CNOT4	4850	hgsc.bcm.edu	hg19	7	135080633	135080633	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	CNOT4	NM_001190850	exon9	c.A882T	p.I294I	GTTAGATATCTGA	.	87.0	30.0	110.0	0.0	.	146	.	.	Atlas-SNP
TBXAS1	6916	hgsc.bcm.edu	hg19	7	139719869	139719869	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	TBXAS1	NM_001166253	exon14	c.T1713C	p.N571N	AAAAAATGGTGTC	.	50.0	25.0	61.0	0.0	.	121	.	.	Atlas-SNP
C7orf29	113763	hgsc.bcm.edu	hg19	7	150027750	150027750	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	C7orf29	NM_138434	exon1	c.A257C	p.E86A	AGATTGAGGCCAT	.	70.0	24.0	64.0	0.0	.	18	.	.	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	hg19	8	10467581	10467581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	RP1L1	NM_178857	exon4	c.G4027A	p.E1343K	CTGTTTCTTTAGT	.	90.0	11.0	40.0	0.0	.	453	.	.	Atlas-SNP
TOX	9760	hgsc.bcm.edu	hg19	8	59851985	59851985	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	TOX	NM_014729	exon3	c.T287A	p.L96Q	TGACACAGAGAAT	.	313.0	111.0	189.0	0.0	.	83	.	.	Atlas-SNP
EEF1D	1936	hgsc.bcm.edu	hg19	8	144663449	144663449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	EEF1D	NM_001130053	exon6	c.T1337C	p.L446P	ACGACGAGCTCAC	.	269.0	143.0	90.0	0.0	.	48	.	.	Atlas-SNP
ZNF7	7553	hgsc.bcm.edu	hg19	8	146067920	146067920	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	ZNF7	NM_003416	exon5	c.A1428C	p.K476N	TGGCAAAGGCTTT	.	265.0	76.0	121.0	0.0	.	62	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79321163	79321163	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	PRUNE2	NM_015225	exon8	c.A6027G	p.T2009T	TGAATTTGTCATC	.	121.0	44.0	150.0	0.0	.	331	.	.	Atlas-SNP
CDK5RAP2	55755	hgsc.bcm.edu	hg19	9	123239658	123239658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	CDK5RAP2	NM_018249	exon15	c.A1697G	p.H566R	ACCAGATGGGTAT	.	44.0	15.0	45.0	0.0	.	157	.	.	Atlas-SNP
FCN1	2219	hgsc.bcm.edu	hg19	9	137804942	137804942	+	Missense_Mutation	SNP	C	C	A	rs143987379	alternate_allele	TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	FCN1	NM_002003	exon6	c.G388T	p.G130C	GCCAGCCGCTCAG	.	83.0	23.0	119.0	0.0	.	62	.	C|1.000;T|0.000	Atlas-SNP
PTF1A	256297	hgsc.bcm.edu	hg19	10	23481461	23481461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	PTF1A	NM_178161	exon1	c.T2A	p.M1K	CGAGCATGGACGC	.	673.0	246.0	711.0	2.0	.	24	.	.	Atlas-SNP
MAT1A	4143	hgsc.bcm.edu	hg19	10	82036146	82036146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	MAT1A	NM_000429	exon6	c.A754G	p.I252V	CTCCGATGACAAA	.	83.0	27.0	98.0	0.0	.	52	.	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	hg19	11	1270921	1270921	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	MUC5B	NM_002458	exon31	c.T12811A	p.S4271T	CCGTCCTCCACCC	.	148.0	53.0	155.0	0.0	.	473	.	.	Atlas-SNP
OR51I2	390064	hgsc.bcm.edu	hg19	11	5475217	5475217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	OR51I2	NM_001004754	exon1	c.C499A	p.P167T	AGGCTGCCTATCT	.	22.0	13.0	57.0	0.0	.	76	.	.	Atlas-SNP
PTPN5	84867	hgsc.bcm.edu	hg19	11	18751293	18751293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	PTPN5	NM_032781	exon13	c.G1402T	p.A468S	GGGGGGCCCGGTC	.	52.0	12.0	53.0	0.0	.	163	.	.	Atlas-SNP
SLC5A12	159963	hgsc.bcm.edu	hg19	11	26714081	26714081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	SLC5A12	NM_178498	exon9	c.C1108T	p.P370S	GATGAGGAAAACA	.	91.0	31.0	104.0	0.0	.	134	.	.	Atlas-SNP
EXT2	2132	hgsc.bcm.edu	hg19	11	44193161	44193161	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	EXT2	NM_000401	exon8	c.G1273C	p.A425P	TTATAGGCCCGGT	.	56.0	29.0	74.0	0.0	.	129	.	.	Atlas-SNP
OR5D14	219436	hgsc.bcm.edu	hg19	11	55563595	55563595	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	OR5D14,NS,carcinoma,0,1	OR5D14	NM_001004735	exon1	c.T564A	p.S188S	CATCTCTGTGTCT	.	94.0	28.0	125.0	0.0	.	116	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103325984	103325984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	DYNC2H1	NM_001080463	exon87	c.C12548T	p.P4183L	TCCATCCAGACAC	.	59.0	16.0	91.0	0.0	.	246	.	.	Atlas-SNP
PANX3	116337	hgsc.bcm.edu	hg19	11	124482989	124482989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	PANX3	NM_052959	exon2	c.G295A	p.D99N	GGCCAGGACAAAA	.	51.0	13.0	54.0	0.0	.	52	.	.	Atlas-SNP
FGF23	8074	hgsc.bcm.edu	hg19	12	4479524	4479524	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	FGF23,NS,carcinoma,0,1	FGF23	NM_020638	exon3	c.C741G	p.F247L	CTTGGCGAAGGGG	.	117.0	26.0	160.0	0.0	.	57	.	.	Atlas-SNP
NDUFA9	4704	hgsc.bcm.edu	hg19	12	4794433	4794433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	NDUFA9	NM_005002	exon10	c.C905T	p.A302V	GGGTAGCAAGAGT	.	106.0	29.0	159.0	0.0	.	45	.	.	Atlas-SNP
NR4A1	3164	hgsc.bcm.edu	hg19	12	52452485	52452485	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	NR4A1	NM_001202233	exon8	c.G1593A	p.L531L	TGGGCTGCAGGAG	.	65.0	4.0	93.0	0.0	.	77	.	.	Atlas-SNP
KNTC1	9735	hgsc.bcm.edu	hg19	12	123106426	123106426	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	KNTC1	NM_014708	exon61	c.6280-2A>T	.	TTCTCTAGAATTT	.	86.0	30.0	146.0	0.0	.	182	.	.	Atlas-SNP
SMAD9	4093	hgsc.bcm.edu	hg19	13	37453684	37453684	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	SMAD9	NM_005905	exon2	c.A143T	p.K48M	CCCTTCTTCTTCT	.	63.0	25.0	66.0	0.0	.	91	.	.	Atlas-SNP
MAGEL2	54551	hgsc.bcm.edu	hg19	15	23890781	23890781	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	MAGEL2_ENST00000532292,NS,carcinoma,0,1	MAGEL2	NM_019066	exon1	c.G2109A	p.A703A	ATTTGCCGCTGCT	.	200.0	56.0	149.0	1.0	.	108	.	.	Atlas-SNP
ACTC1	70	hgsc.bcm.edu	hg19	15	35084456	35084456	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	ACTC1	NM_005159	exon5	c.A643T	p.K215X	TCTCTTTAATGTC	.	126.0	72.0	145.0	0.0	.	75	.	.	Atlas-SNP
UBR1	197131	hgsc.bcm.edu	hg19	15	43269020	43269020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	UBR1	NM_174916	exon39	c.G4264T	p.V1422F	GATCAACAGGGTC	.	172.0	47.0	195.0	0.0	.	124	.	.	Atlas-SNP
GATM	2628	hgsc.bcm.edu	hg19	15	45661556	45661556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	GATM	NM_001482	exon3	c.T452C	p.L151S	TACTTCAATGACC	.	112.0	36.0	158.0	0.0	.	34	.	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54308039	54308039	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	UNC13C	NM_001080534	exon1	c.A2939T	p.Y980F	GGGCCTATAAAAA	.	192.0	114.0	196.0	0.0	.	674	.	.	Atlas-SNP
TBC1D10B	26000	hgsc.bcm.edu	hg19	16	30380742	30380742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	TBC1D10B	NM_015527	exon1	c.G763T	p.G255C	AGATGCCAGGTCC	.	46.0	22.0	59.0	0.0	.	32	.	.	Atlas-SNP
USP6	9098	hgsc.bcm.edu	hg19	17	5041492	5041492	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	USP6_ENST00000250066,caecum,carcinoma,0,4	USP6	NM_004505	exon13	c.C1002T	p.N334N	CATGAACGATGAC	.	58.0	11.0	77.0	0.0	.	213	.	.	Atlas-SNP
PPP1R1B	84152	hgsc.bcm.edu	hg19	17	37791909	37791909	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	PPP1R1B	NM_032192	exon6	c.C495T	p.R165R	GGAGCGCCCACCC	.	127.0	69.0	125.0	0.0	.	9	.	.	Atlas-SNP
GFAP	2670	hgsc.bcm.edu	hg19	17	42992812	42992812	+	Missense_Mutation	SNP	C	C	T	rs146698039		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	GFAP	NM_001131019	exon1	c.G43A	p.V15I	AGGAGACGTAGGA	.	127.0	68.0	117.0	0.0	.	88	.	C|1.000;T|0.000	Atlas-SNP
LRRC37A3	374819	hgsc.bcm.edu	hg19	17	62892812	62892812	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	LRRC37A3	NM_199340	exon3	c.T564C	p.D188D	CGGTGTATCTGTA	.	239.0	55.0	233.0	0.0	.	75	.	.	Atlas-SNP
GNA13	10672	hgsc.bcm.edu	hg19	17	63014400	63014400	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	GNA13	NM_006572	exon3	c.C532T	p.L178L	TATCCAGGAAATA	.	415.0	106.0	372.0	0.0	.	69	.	.	Atlas-SNP
HELZ	9931	hgsc.bcm.edu	hg19	17	65174838	65174838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	HELZ	NM_014877	exon13	c.A1367G	p.Y456C	GACTGATAGTTGC	.	137.0	36.0	136.0	0.0	.	160	.	.	Atlas-SNP
PSMD12	5718	hgsc.bcm.edu	hg19	17	65340883	65340883	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	PSMD12	NM_002816	exon9	c.C922G	p.L308V	TAAAAAGCTTTAA	.	407.0	97.0	425.0	0.0	.	32	.	.	Atlas-SNP
LOXHD1	125336	hgsc.bcm.edu	hg19	18	44184173	44184173	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	LOXHD1	NM_144612	exon7	c.G779C	p.G260A	TTGTTCCCAATAT	.	60.0	33.0	74.0	0.0	.	367	.	.	Atlas-SNP
SMAD4	4089	hgsc.bcm.edu	hg19	18	48575189	48575189	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	SMAD4,rectum,carcinoma,0,1	SMAD4	NM_005359	exon3	c.T383C	p.V128A	TCTGTGTGAATCC	.	97.0	43.0	172.0	1.0	.	822	.	.	Atlas-SNP
DYNAP	284254	hgsc.bcm.edu	hg19	18	52258515	52258515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	.	NM_173629	exon1	c.T80C	p.M27T	CAAGAATGGACAG	.	93.0	38.0	136.0	0.0	.	.	.	.	Atlas-SNP
SALL3	27164	hgsc.bcm.edu	hg19	18	76757080	76757080	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	SALL3	NM_171999	exon3	c.A3661T	p.N1221Y	ATCACTAACGGGC	.	151.0	10.0	180.0	0.0	.	162	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9086539	9086539	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	MUC16	NM_024690	exon1	c.A5276T	p.D1759V	TCCACATCAGGAG	.	87.0	28.0	119.0	0.0	.	4315	.	.	Atlas-SNP
ZNF253	56242	hgsc.bcm.edu	hg19	19	20003048	20003048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	ZNF253	NM_021047	exon4	c.A992G	p.K331R	TACATAAGAGAAT	.	123.0	64.0	135.0	0.0	.	99	.	.	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	hg19	19	22940398	22940398	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	ZNF99,NS,carcinoma,0,1	ZNF99	NM_001080409	exon4	c.G2313A	p.K771K	GAAATGCTTAAAA	.	27.0	4.0	35.0	1.0	.	273	.	.	Atlas-SNP
DMKN	93099	hgsc.bcm.edu	hg19	19	36003608	36003608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	DMKN	NM_001190347	exon2	c.C511A	p.P171T	CCCACGGAGTCCC	.	51.0	18.0	58.0	0.0	.	116	.	.	Atlas-SNP
KIRREL2	84063	hgsc.bcm.edu	hg19	19	36348363	36348363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	KIRREL2	NM_199180	exon2	c.G178A	p.G60R	AAGAGTGGGCTGG	.	157.0	63.0	183.0	0.0	.	170	.	.	Atlas-SNP
GGN	199720	hgsc.bcm.edu	hg19	19	38876402	38876402	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	GGN	NM_152657	exon3	c.A1500G	p.P500P	GGGAGCTGGAGCC	.	55.0	7.0	47.0	0.0	.	50	.	.	Atlas-SNP
PNMAL1	55228	hgsc.bcm.edu	hg19	19	46973527	46973527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	PNMAL1	NM_018215	exon2	c.C766A	p.P256T	TCCAGGGCACTGC	.	28.0	9.0	54.0	0.0	.	87	.	.	Atlas-SNP
ZNF347	84671	hgsc.bcm.edu	hg19	19	53652039	53652039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	ZNF347	NM_001172675	exon4	c.A169G	p.I57V	AGATAATACTGAG	.	128.0	45.0	169.0	0.0	.	87	.	.	Atlas-SNP
BACH1	571	hgsc.bcm.edu	hg19	21	30698823	30698823	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	BACH1	NM_206866	exon3	c.A678G	p.K226K	CCCCAAATACAGA	.	97.0	33.0	137.0	0.0	.	66	.	.	Atlas-SNP
COL6A1	1291	hgsc.bcm.edu	hg19	21	47412121	47412121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	COL6A1	NM_001848	exon17	c.C1226T	p.A409V	GAGAGGCGGGCGA	.	69.0	25.0	86.0	0.0	.	101	.	.	Atlas-SNP
RFPL3	10738	hgsc.bcm.edu	hg19	22	32754272	32754272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	RFPL3	NM_001098535	exon1	c.C214A	p.H72N	GAGCCCCATGGGG	.	125.0	50.0	160.0	0.0	.	91	.	.	Atlas-SNP
DDX53	168400	hgsc.bcm.edu	hg19	X	23018432	23018432	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	DDX53	NM_182699	exon1	c.C258T	p.N86N	CATAAACGGGGAA	.	147.0	118.0	203.0	0.0	.	76	.	.	Atlas-SNP
RBM41	55285	hgsc.bcm.edu	hg19	X	106359256	106359256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	RBM41	NM_001171080	exon3	c.C154T	p.P52S	TACCAGGAGCAAA	.	138.0	115.0	187.0	1.0	.	34	.	.	Atlas-SNP
RNF113A	7737	hgsc.bcm.edu	hg19	X	119005199	119005199	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	RNF113A	NM_006978	exon1	c.A378G	p.K126K	GCGCTCTTTCTCT	.	25.0	20.0	34.0	0.0	.	39	.	.	Atlas-SNP
ATP2B3	492	hgsc.bcm.edu	hg19	X	152801801	152801801	+	Silent	SNP	G	G	T	rs202115287	by1000genomes;alternate_allele	TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	ATP2B3	NM_001001344	exon1	c.G96T	p.A32A	GCTGGCGGAGCTG	.	80.0	65.0	127.0	0.0	.	552	.	G|0.999;A|0.001	Atlas-SNP
C4A	720	hgsc.bcm.edu	hg19	6	31951924	31951925	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	C4A	NM_007293	exon8	c.881_882insT	p.T294fs	.	.	149.0	27.0	163.0	0.0	.	15	.	.	Atlas-INDEL
RHCG	51458	hgsc.bcm.edu	hg19	15	90016014	90016014	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	RHCG	NM_016321	exon10	c.1393delA	p.M465fs	.	.	129.0	31.0	129.0	0.0	.	49	.	.	Atlas-INDEL
PKD2L2	27039	hgsc.bcm.edu	hg19	5	137275835	137275835	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	PKD2L2	NM_014386	exon14	c.1840delT	p.X614K	.	.	232.0	86.0	170.0	0.0	.	68	.	.	Atlas-INDEL
C4A	720	hgsc.bcm.edu	hg19	6	31984662	31984663	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	C4A	NM_007293	exon8	c.881_882insT	p.T294fs	.	.	136.0	19.0	191.0	0.0	.	15	.	.	Atlas-INDEL
HAS3	3038	hgsc.bcm.edu	hg19	16	69152319	69152344	+	Frame_Shift_Del	DEL	CGGAAGCATGGTCCGTTCACCAACGC	CGGAAGCATGGTCCGTTCACCAACGC	-	novel		TCGA-DD-AADU-01A-11D-A40R-10	TCGA-DD-AADU-10A-01D-A40U-10	CGGAAGCATGGTCCGTTCACCAACGC	CGGAAGCATGGTCCGTTCACCAACGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d049bc2-80dc-4a61-b310-2c0eb6e10e9d	8e8307fc-2b03-455d-9aa9-83626768011c	.	HAS3	NM_138612	exon4	c.799_824del	p.267_275del	.	.	104.0	32.0	112.0	0.0	.	61	.	.	Atlas-INDEL
