Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
EIF4G3	8672	hgsc.bcm.edu	hg19	1	21183930	21183930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	EIF4G3	NM_001198801	exon23	c.T3245C	p.V1082A	TCCAGTACCCGAC	.	74.0	24.0	88.0	0.0	.	300	.	.	Atlas-SNP
AHDC1	27245	hgsc.bcm.edu	hg19	1	27877569	27877569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	AHDC1	NM_001029882	exon6	c.C1058T	p.P353L	CCCAGGGGCTGCT	.	70.0	16.0	88.0	0.0	.	98	.	.	Atlas-SNP
IFI44L	10964	hgsc.bcm.edu	hg19	1	79095456	79095456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	IFI44L	NM_006820	exon4	c.C579A	p.D193E	TGCAGACTTGGTT	.	68.0	28.0	54.0	0.0	.	93	.	.	Atlas-SNP
SLC22A15	55356	hgsc.bcm.edu	hg19	1	116574049	116574049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	SLC22A15	NM_018420	exon6	c.C791T	p.A264V	AAGAGGCGCTGTA	.	81.0	24.0	116.0	0.0	.	65	.	.	Atlas-SNP
IQGAP3	128239	hgsc.bcm.edu	hg19	1	156521882	156521882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	IQGAP3	NM_178229	exon14	c.T1454C	p.F485S	GCATCGAAGTAAC	.	127.0	16.0	49.0	0.0	.	146	.	.	Atlas-SNP
ADCY10	55811	hgsc.bcm.edu	hg19	1	167830128	167830128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	ADCY10	NM_018417	exon15	c.A1790G	p.N597S	ATGTCATTAAGAA	.	221.0	40.0	103.0	0.0	.	175	.	.	Atlas-SNP
LRRN2	10446	hgsc.bcm.edu	hg19	1	204589034	204589034	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	LRRN2	NM_006338	exon3	c.C87T	p.C29C	AGGGGGGCAGGGA	.	139.0	25.0	90.0	0.0	.	81	.	.	Atlas-SNP
ADI1	55256	hgsc.bcm.edu	hg19	2	3523232	3523232	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	ADI1	NM_018269	exon1	c.C27T	p.D9D	CGGGGCGTCGTCC	.	64.0	15.0	95.0	0.0	.	12	.	.	Atlas-SNP
CCDC164	92749	hgsc.bcm.edu	hg19	2	26652600	26652600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	CCDC164	NM_145038	exon5	c.G645A	p.M215I	TGTGATGAAAACC	.	99.0	28.0	102.0	0.0	.	84	.	.	Atlas-SNP
ATRAID	51374	hgsc.bcm.edu	hg19	2	27435079	27435079	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	.	NM_080592	exon1	c.C8G	p.T3S	TGAAGACCAGCGC	.	272.0	21.0	254.0	0.0	.	.	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141200109	141200109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	LRP1B	NM_018557	exon66	c.C10378T	p.P3460S	AGTCTGGATCCTC	.	93.0	18.0	102.0	0.0	.	1315	.	.	Atlas-SNP
KIF5C	3800	hgsc.bcm.edu	hg19	2	149806841	149806841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	KIF5C	NM_004522	exon10	c.C833T	p.P278L	ATGTGCCATACCG	.	62.0	5.0	45.0	0.0	.	166	.	.	Atlas-SNP
ZNF148	7707	hgsc.bcm.edu	hg19	3	124951547	124951547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	ZNF148	NM_021964	exon9	c.C2023T	p.H675Y	CAAAGTGGGACTT	.	92.0	51.0	86.0	0.0	.	84	.	.	Atlas-SNP
MGLL	11343	hgsc.bcm.edu	hg19	3	127414028	127414028	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	MGLL	NM_007283	exon7	c.C606T	p.D202D	ATAAATGTCGACC	.	137.0	29.0	159.0	0.0	.	19	.	.	Atlas-SNP
MED12L	116931	hgsc.bcm.edu	hg19	3	151107778	151107778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	MED12L	NM_053002	exon36	c.G5358T	p.Q1786H	TCCACAGAGCAAC	.	63.0	7.0	64.0	0.0	.	271	.	.	Atlas-SNP
ABCC5	10057	hgsc.bcm.edu	hg19	3	183667774	183667774	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	ABCC5	NM_005688	exon21	c.G3084T	p.L1028L	AATGTGCAGGACT	.	151.0	34.0	157.0	0.0	.	142	.	.	Atlas-SNP
SLIT2	9353	hgsc.bcm.edu	hg19	4	20533635	20533635	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	SLIT2	NM_004787	exon17	c.T1642C	p.L548L	ACCGTGTTGGAAG	.	265.0	88.0	374.0	0.0	.	290	.	.	Atlas-SNP
PALLD	23022	hgsc.bcm.edu	hg19	4	169602487	169602487	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	PALLD	NM_001166108	exon4	c.C1092T	p.A364A	AGGTGCCAGTTCA	.	29.0	13.0	53.0	0.0	.	179	.	.	Atlas-SNP
RXFP3	51289	hgsc.bcm.edu	hg19	5	33937055	33937055	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	RXFP3	NM_016568	exon1	c.G210A	p.G70G	CGGCGGGGCAGAG	.	104.0	7.0	92.0	0.0	.	114	.	.	Atlas-SNP
RAD50	10111	hgsc.bcm.edu	hg19	5	131893023	131893023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	RAD50	NM_005732	exon1	c.C7G	p.R3G	ATGTCCCGGATCG	.	178.0	50.0	168.0	0.0	.	246	.	.	Atlas-SNP
PCDHGA1	56114	hgsc.bcm.edu	hg19	5	140711458	140711458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	PCDHGA1_ENST00000517417,NS,carcinoma,-1,4	PCDHGA1	NM_018912	exon1	c.C1207T	p.R403C	TATTACCGTTTAG	.	95.0	21.0	91.0	0.0	.	397	.	.	Atlas-SNP
PDGFRB	5159	hgsc.bcm.edu	hg19	5	149504387	149504387	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	PDGFRB	NM_002609	exon13	c.C1815T	p.T605T	GCCGAGGGTGCGT	.	25.0	13.0	21.0	0.0	.	142	.	.	Atlas-SNP
PRRC2A	7916	hgsc.bcm.edu	hg19	6	31600194	31600194	+	Silent	SNP	T	T	G	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	PRRC2A	NM_004638	exon16	c.T3744G	p.A1248A	GAGGGCTCAGCAG	.	69.0	16.0	54.0	0.0	.	152	.	.	Atlas-SNP
PRDM13	59336	hgsc.bcm.edu	hg19	6	100061211	100061211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	PRDM13	NM_021620	exon4	c.G700A	p.A234T	TCTTCCGCGCCCT	.	54.0	10.0	43.0	0.0	.	65	.	.	Atlas-SNP
FIG4	9896	hgsc.bcm.edu	hg19	6	110085143	110085143	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	FIG4	NM_014845	exon13	c.G1392A	p.W464X	CAGGTGGAATGAA	.	131.0	55.0	90.0	0.0	.	77	.	.	Atlas-SNP
THEMIS	387357	hgsc.bcm.edu	hg19	6	128134119	128134119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	THEMIS	NM_001010923	exon4	c.G1667A	p.R556H	GGAGGGCGAGGTG	.	93.0	18.0	75.0	0.0	.	168	.	.	Atlas-SNP
THEMIS	387357	hgsc.bcm.edu	hg19	6	128135074	128135074	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	THEMIS,NS,carcinoma,0,3	THEMIS	NM_001010923	exon4	c.C712T	p.R238X	CTTTTCGAACTAA	.	60.0	18.0	59.0	0.0	.	168	.	.	Atlas-SNP
KDELR2	11014	hgsc.bcm.edu	hg19	7	6509351	6509351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	KDELR2	NM_001100603	exon3	c.A227G	p.Y76C	ATCAGGTACACTG	.	246.0	18.0	150.0	0.0	.	31	.	.	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	hg19	7	20689688	20689688	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	ABCB5	NM_001163941	exon12	c.T1250A	p.V417D	AGACAGTCGCCTT	.	116.0	25.0	88.0	0.0	.	357	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100681533	100681533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	MUC17	NM_001040105	exon3	c.C6836A	p.T2279N	GAACGACTCCATT	.	67.0	7.0	58.0	0.0	.	804	.	.	Atlas-SNP
RBM28	55131	hgsc.bcm.edu	hg19	7	127979340	127979340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	RBM28	NM_018077	exon3	c.A313G	p.K105E	CTTTTTTAGCCTT	.	48.0	11.0	58.0	0.0	.	71	.	.	Atlas-SNP
CYP11B1	1584	hgsc.bcm.edu	hg19	8	143961168	143961168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	CYP11B1	NM_000497	exon1	c.C62T	p.A21V	GCCTGTGCCCTTT	.	98.0	22.0	48.0	0.0	.	128	.	.	Atlas-SNP
FOXE1	2304	hgsc.bcm.edu	hg19	9	100616728	100616728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	FOXE1	NM_004473	exon1	c.G532A	p.A178T	GCCGCCGCCGCCA	.	211.0	15.0	162.0	0.0	.	19	.	.	Atlas-SNP
SGPL1	8879	hgsc.bcm.edu	hg19	10	72633292	72633292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	SGPL1	NM_003901	exon12	c.G1244A	p.G415D	AGAACGGCTATGT	.	65.0	14.0	49.0	0.0	.	37	.	.	Atlas-SNP
TCTN3	26123	hgsc.bcm.edu	hg19	10	97442541	97442541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	TCTN3	NM_015631	exon12	c.G1319A	p.S440N	AAGTGGCTGCAGT	.	45.0	22.0	46.0	0.0	.	66	.	.	Atlas-SNP
OR5AP2	338675	hgsc.bcm.edu	hg19	11	56409796	56409796	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	OR5AP2	NM_001002925	exon1	c.C120A	p.I40I	CATATAGATCAAC	.	100.0	43.0	62.0	0.0	.	69	.	.	Atlas-SNP
SLC25A45	283130	hgsc.bcm.edu	hg19	11	65147644	65147644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	SLC25A45	NM_182556	exon3	c.G40A	p.A14T	CCAGAGCGCCTGT	.	108.0	55.0	94.0	0.0	.	23	.	.	Atlas-SNP
OR10S1	219873	hgsc.bcm.edu	hg19	11	123847876	123847876	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	OR10S1	NM_001004474	exon1	c.T523G	p.S175A	TGAGGGAGGTGTG	.	115.0	28.0	76.0	0.0	.	78	.	.	Atlas-SNP
IGSF9B	22997	hgsc.bcm.edu	hg19	11	133816010	133816010	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	IGSF9B	NM_014987	exon2	c.C208G	p.P70A	AGATAGGGATGGG	.	140.0	64.0	110.0	0.0	.	290	.	.	Atlas-SNP
CS	1431	hgsc.bcm.edu	hg19	12	56676233	56676233	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	CS	NM_004077	exon6	c.C559T	p.Q187X	TACCCTGTGCATA	.	132.0	8.0	103.0	0.0	.	44	.	.	Atlas-SNP
RNF17	56163	hgsc.bcm.edu	hg19	13	25433221	25433221	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	RNF17	NM_031277	exon26	c.A3693G	p.K1231K	GAAAAAAGGAGAA	.	78.0	4.0	107.0	0.0	.	259	.	.	Atlas-SNP
FLT1	2321	hgsc.bcm.edu	hg19	13	29012442	29012442	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	FLT1	NM_002019	exon4	c.C429T	p.P143P	AATTTCGGGGATT	.	39.0	15.0	55.0	0.0	.	393	.	.	Atlas-SNP
ARHGEF40	55701	hgsc.bcm.edu	hg19	14	21541244	21541244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	ARHGEF40	NM_018071	exon2	c.C44T	p.A15V	CTCTCGCCGCCCT	.	46.0	9.0	55.0	0.0	.	84	.	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28421672	28421672	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	HERC2	NM_004667	exon63	c.C9588T	p.P3196P	GTTCTGGGGAATG	.	118.0	26.0	153.0	0.0	.	501	.	.	Atlas-SNP
HDC	3067	hgsc.bcm.edu	hg19	15	50549685	50549685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	HDC	NM_002112	exon4	c.G378A	p.M126I	TCCCAGCATTTTT	.	44.0	28.0	42.0	0.0	.	86	.	.	Atlas-SNP
ZSCAN10	84891	hgsc.bcm.edu	hg19	16	3139523	3139523	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	ZSCAN10	NM_032805	exon5	c.G1747T	p.E583X	CGCACTCGCTGCA	.	44.0	15.0	74.0	0.0	.	63	.	.	Atlas-SNP
TRAP1	10131	hgsc.bcm.edu	hg19	16	3713465	3713465	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	TRAP1	NM_016292	exon14	c.G1668A	p.V556V	GTGATCCACGACT	.	39.0	19.0	64.0	0.0	.	53	.	.	Atlas-SNP
ITGAD	3681	hgsc.bcm.edu	hg19	16	31422687	31422687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	ITGAD	NM_005353	exon14	c.G1556A	p.R519H	GGGGCCGCTTTGG	.	81.0	23.0	110.0	0.0	.	154	.	.	Atlas-SNP
PMFBP1	83449	hgsc.bcm.edu	hg19	16	72198723	72198723	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	PMFBP1	NM_031293	exon3	c.A105G	p.R35R	CCTCTGTCTCTTG	.	37.0	29.0	45.0	0.0	.	101	.	.	Atlas-SNP
CDT1	81620	hgsc.bcm.edu	hg19	16	88871218	88871218	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	CDT1	NM_030928	exon3	c.G400C	p.G134R	GAGCTGGGGGCAA	.	87.0	66.0	88.0	0.0	.	30	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577524	7577524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	TP53_ENST00000413465,NS,carcinoma,+1,1	TP53	NM_000546	exon7	c.A757G	p.T253A	TGATGGTGAGGAT	.	62.0	38.0	77.0	0.0	.	33396	.	.	Atlas-SNP
KRT10	3858	hgsc.bcm.edu	hg19	17	38975319	38975319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	KRT10	NM_000421	exon7	c.G1468A	p.G490S	CGTGGCCGCCGCC	.	143.0	9.0	62.0	0.0	.	56	.	.	Atlas-SNP
KRT9	3857	hgsc.bcm.edu	hg19	17	39726179	39726179	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	KRT9	NM_000226	exon3	c.T814A	p.S272T	GGTCAGACTTCTC	.	86.0	47.0	66.0	0.0	.	78	.	.	Atlas-SNP
ARHGAP27	201176	hgsc.bcm.edu	hg19	17	43480082	43480082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	ARHGAP27	NM_199282	exon9	c.G718A	p.E240K	TCACCTCCAGCAC	.	61.0	19.0	32.0	0.0	.	37	.	.	Atlas-SNP
NACA2	342538	hgsc.bcm.edu	hg19	17	59668029	59668029	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	NACA2	NM_199290	exon1	c.C513T	p.V171V	TTCATCGACCTCT	.	63.0	7.0	67.0	0.0	.	33	.	.	Atlas-SNP
SLMO1	10650	hgsc.bcm.edu	hg19	18	12427045	12427045	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	SLMO1	NM_001142405	exon4	c.A297G	p.T99T	GATCACACTCACA	.	105.0	52.0	110.0	0.0	.	11	.	.	Atlas-SNP
ZNF521	25925	hgsc.bcm.edu	hg19	18	22804905	22804905	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	ZNF521	NM_015461	exon4	c.T2977A	p.C993S	TCTTGCAAATCCG	.	50.0	19.0	43.0	0.0	.	269	.	.	Atlas-SNP
SMAD4	4089	hgsc.bcm.edu	hg19	18	48591919	48591919	+	Missense_Mutation	SNP	G	G	A	rs377767347	bycluster	TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	SMAD4,caecum,carcinoma,+1,22	SMAD4	NM_005359	exon9	c.G1082A	p.R361H	GAGATCGCTTTTG	.	57.0	21.0	85.0	0.0	.	822	.	.	Atlas-SNP
CCDC102B	79839	hgsc.bcm.edu	hg19	18	66504069	66504069	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	CCDC102B	NM_001093729	exon4	c.T69A	p.I23I	ATCAATTAAGTCA	.	36.0	5.0	69.0	0.0	.	92	.	.	Atlas-SNP
C2CD4C	126567	hgsc.bcm.edu	hg19	19	407984	407984	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	C2CD4C	NM_001136263	exon2	c.T378C	p.T126T	GGCGTCAGTGGCC	.	162.0	73.0	127.0	0.0	.	13	.	.	Atlas-SNP
CD97	976	hgsc.bcm.edu	hg19	19	14501784	14501784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	CD97	NM_078481	exon4	c.C239T	p.S80L	AATTCTCGGACTG	.	160.0	31.0	111.0	0.0	.	86	.	.	Atlas-SNP
HPN	3249	hgsc.bcm.edu	hg19	19	35540393	35540393	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	HPN	NM_182983	exon4	c.A133T	p.R45W	CTCCTCAGGAGTG	.	42.0	8.0	39.0	0.0	.	45	.	.	Atlas-SNP
LRFN3	79414	hgsc.bcm.edu	hg19	19	36431682	36431682	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	LRFN3	NM_024509	exon2	c.C1355G	p.P452R	CTATCCCGGGCAT	.	92.0	36.0	73.0	0.0	.	43	.	.	Atlas-SNP
CYP2A13	1553	hgsc.bcm.edu	hg19	19	41599545	41599545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	CYP2A13	NM_000766	exon6	c.A842G	p.N281S	AGAAGAACCCCAA	.	150.0	32.0	116.0	0.0	.	90	.	.	Atlas-SNP
ATP1A3	478	hgsc.bcm.edu	hg19	19	42485722	42485722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	ATP1A3	NM_001256214	exon11	c.G1408A	p.V470M	GCTTCACGGAGCC	.	80.0	33.0	60.0	0.0	.	117	.	.	Atlas-SNP
IGFL2	147920	hgsc.bcm.edu	hg19	19	46663963	46663963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	IGFL2	NM_001002915	exon4	c.G199A	p.A67T	AATGACGCCATCG	.	71.0	19.0	61.0	0.0	.	15	.	.	Atlas-SNP
SBK2	646643	hgsc.bcm.edu	hg19	19	56041657	56041657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	SBK2	NM_001101401	exon4	c.G490A	p.A164T	GGGCGGCGCAGCG	.	42.0	11.0	31.0	0.0	.	26	.	.	Atlas-SNP
CHD6	84181	hgsc.bcm.edu	hg19	20	40050514	40050514	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	CHD6	NM_032221	exon31	c.C4761T	p.G1587G	GGCAGTGCCGATG	.	155.0	21.0	67.0	0.0	.	312	.	.	Atlas-SNP
ZNF831	128611	hgsc.bcm.edu	hg19	20	57769145	57769145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	ZNF831	NM_178457	exon1	c.G3071A	p.G1024E	TGGGGGGGGACAA	.	59.0	9.0	21.0	0.0	.	287	.	.	Atlas-SNP
IL2RB	3560	hgsc.bcm.edu	hg19	22	37524403	37524403	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	IL2RB	NM_000878	exon10	c.C1389A	p.V463V	TCTGGGGACTCTT	.	96.0	13.0	57.0	0.0	.	44	.	.	Atlas-SNP
EP300	2033	hgsc.bcm.edu	hg19	22	41547912	41547912	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	EP300	NM_001429	exon15	c.C2893G	p.Q965E	AATTCTCAGGCCA	.	208.0	39.0	115.0	0.0	.	367	.	.	Atlas-SNP
FAM47A	158724	hgsc.bcm.edu	hg19	X	34149816	34149816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	FAM47A	NM_203408	exon1	c.A580G	p.T194A	CCGGAGTCTCGGG	.	80.0	28.0	105.0	0.0	.	249	.	.	Atlas-SNP
KLHL4	56062	hgsc.bcm.edu	hg19	X	86887268	86887268	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	KLHL4	NM_019117	exon7	c.C1383T	p.T461T	TGGCACCATGAAT	.	204.0	30.0	278.0	0.0	.	263	.	.	Atlas-SNP
RNF128	79589	hgsc.bcm.edu	hg19	X	105970508	105970508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	RNF128	NM_194463	exon1	c.G365A	p.R122H	TCCAACGCGGCGG	.	169.0	44.0	222.0	0.0	.	74	.	.	Atlas-SNP
STAG2	10735	hgsc.bcm.edu	hg19	X	123205074	123205074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	STAG2	NM_001042749	exon25	c.C2434T	p.P812S	TTAGAGCCATTAG	.	79.0	13.0	87.0	0.0	.	309	.	.	Atlas-SNP
AFF2	2334	hgsc.bcm.edu	hg19	X	147919196	147919196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	AFF2	NM_002025	exon5	c.C1112T	p.P371L	CTACTCCTCTCAC	.	65.0	17.0	82.0	0.0	.	679	.	.	Atlas-SNP
MIR600HG	81571	hgsc.bcm.edu	hg19	9	125874203	125874204	+	RNA	INS	-	-	CTC	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	.	.	.	.	.	.	.	61.0	30.0	63.0	0.0	.	.	.	.	Atlas-INDEL
NYAP1	222950	hgsc.bcm.edu	hg19	7	100086313	100086313	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	.	NM_173564	exon4	c.968delT	p.I323fs	.	.	94.0	21.0	98.0	0.0	.	.	.	.	Atlas-INDEL
SMAD4	4089	hgsc.bcm.edu	hg19	18	48575093	48575093	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	SMAD4	NM_005359	exon3	c.286delG	p.A96fs	.	.	74.0	12.0	107.0	0.0	.	822	.	.	Atlas-INDEL
FEZF2	55079	hgsc.bcm.edu	hg19	3	62358214	62358215	+	In_Frame_Ins	INS	-	-	CCGCCG	novel		TCGA-DD-AAE0-01A-11D-A40R-10	TCGA-DD-AAE0-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2a18f024-178d-46d9-880b-a751edf71b67	42e0aa56-bad8-4d28-adb6-4f956cbaf658	.	FEZF2	NM_018008	exon2	c.330_331insCGGCGG	p.G110delinsGGG	.	.	46.0	16.0	33.0	0.0	.	46	.	.	Atlas-INDEL
