Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
EBNA1BP2	10969	hgsc.bcm.edu	hg19	1	43637724	43637724	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	EBNA1BP2	NM_001159936	exon2	c.G231A	p.E77E	ACCTACCTCTCTG	.	48.0	31.0	75.0	0.0	.	37	.	.	Atlas-SNP
OLFML2B	25903	hgsc.bcm.edu	hg19	1	161989734	161989734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	OLFML2B	NM_015441	exon2	c.G413A	p.R138Q	GCCTCCCGCAGCT	.	164.0	107.0	73.0	0.0	.	114	.	.	Atlas-SNP
CFHR4	10877	hgsc.bcm.edu	hg19	1	196881942	196881942	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	CFHR4	NM_001201550	exon7	c.A1070T	p.N357I	TTTTAAATAAAGA	.	1144.0	198.0	571.0	0.0	.	141	.	.	Atlas-SNP
CACNA1S	779	hgsc.bcm.edu	hg19	1	201018205	201018205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	CACNA1S	NM_000069	exon35	c.G4264A	p.V1422M	TCACCACGTCCAG	.	80.0	42.0	25.0	0.0	.	249	.	.	Atlas-SNP
ZNF678	339500	hgsc.bcm.edu	hg19	1	227843476	227843476	+	Silent	SNP	A	A	C	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	ZNF678	NM_178549	exon4	c.A1690C	p.R564R	TATAAGAGAATTT	.	404.0	82.0	253.0	0.0	.	137	.	.	Atlas-SNP
VIT	5212	hgsc.bcm.edu	hg19	2	36982071	36982071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	VIT	NM_001177969	exon5	c.C283A	p.L95I	GGTGTGCTTGATA	.	89.0	49.0	78.0	0.0	.	138	.	.	Atlas-SNP
AOX1	316	hgsc.bcm.edu	hg19	2	201526345	201526345	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	AOX1	NM_001159	exon30	c.G3419C	p.G1140A	CTGTTGGATACTT	.	74.0	33.0	80.0	0.0	.	152	.	.	Atlas-SNP
PTPRN	5798	hgsc.bcm.edu	hg19	2	220172166	220172166	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	PTPRN	NM_002846	exon3	c.G280T	p.G94X	CCTTACCTTGGGA	.	54.0	17.0	49.0	0.0	.	138	.	.	Atlas-SNP
LAP3	51056	hgsc.bcm.edu	hg19	4	17586622	17586622	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	LAP3	NM_015907	exon6	c.A567T	p.G189G	GAAAGGAGTCCTG	.	73.0	33.0	97.0	0.0	.	50	.	.	Atlas-SNP
CTNND2	1501	hgsc.bcm.edu	hg19	5	11732327	11732327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	CTNND2	NM_001332	exon2	c.G95A	p.S32N	CCGGGGCTCAGGG	.	51.0	24.0	74.0	0.0	.	289	.	.	Atlas-SNP
AP3B1	8546	hgsc.bcm.edu	hg19	5	77471662	77471662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	AP3B1	NM_003664	exon10	c.G1041T	p.R347S	CACCTCCCTAGAA	.	138.0	55.0	135.0	0.0	.	94	.	.	Atlas-SNP
PCDHB12	56124	hgsc.bcm.edu	hg19	5	140589015	140589015	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	PCDHB12	NM_018932	exon1	c.A536T	p.H179L	ATTTCCACGTTAA	.	130.0	58.0	116.0	0.0	.	179	.	.	Atlas-SNP
KIAA0141	9812	hgsc.bcm.edu	hg19	5	141318088	141318088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	KIAA0141	NM_001142603	exon12	c.C1312T	p.P438S	GTAGCCCCGGGGC	.	60.0	25.0	58.0	0.0	.	44	.	.	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	hg19	7	20683148	20683148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	ABCB5	NM_001163941	exon7	c.A571G	p.T191A	ATGTCTACTTTTT	.	124.0	47.0	160.0	0.0	.	357	.	.	Atlas-SNP
TONSL	4796	hgsc.bcm.edu	hg19	8	145668159	145668159	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	TONSL	NM_013432	exon5	c.T479C	p.M160T	GTCCTCATCTCAT	.	127.0	37.0	59.0	0.0	.	128	.	.	Atlas-SNP
KIAA0020	9933	hgsc.bcm.edu	hg19	9	2810431	2810431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	KIAA0020,NS,carcinoma,0,1	KIAA0020	NM_014878	exon16	c.C1636A	p.L546I	TGTGAAGCTATGA	.	53.0	3.0	69.0	0.0	.	56	.	.	Atlas-SNP
BICD2	23299	hgsc.bcm.edu	hg19	9	95481421	95481421	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	BICD2	NM_001003800	exon5	c.G1506A	p.L502L	CTTCTCCAGCCGG	.	45.0	23.0	38.0	0.0	.	68	.	.	Atlas-SNP
OGDHL	55753	hgsc.bcm.edu	hg19	10	50950948	50950948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	OGDHL,NS,carcinoma,0,1	OGDHL	NM_018245	exon15	c.G1938T	p.M646I	AAAGGCCATGTAC	.	53.0	19.0	35.0	0.0	.	149	.	.	Atlas-SNP
ZNF143	7702	hgsc.bcm.edu	hg19	11	9522758	9522758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	ZNF143	NM_003442	exon11	c.G1088A	p.G363E	AGCCAGGATGTGG	.	112.0	56.0	81.0	0.0	.	38	.	.	Atlas-SNP
DCDC1	341019	hgsc.bcm.edu	hg19	11	31312362	31312362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	DCDC1	NM_181807	exon7	c.G792A	p.M264I	CCCATTCATTGTC	.	194.0	83.0	174.0	0.0	.	74	.	.	Atlas-SNP
PGA5	5222	hgsc.bcm.edu	hg19	11	61017209	61017209	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	PGA5	NM_014224	exon7	c.C842G	p.S281C	GCACCTCTCTGCT	.	178.0	65.0	168.0	0.0	.	20	.	.	Atlas-SNP
ZNF202	7753	hgsc.bcm.edu	hg19	11	123600489	123600489	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	ZNF202	NM_003455	exon5	c.G447A	p.T149T	ATGCACCGTCTCC	.	55.0	10.0	41.0	0.0	.	72	.	.	Atlas-SNP
FGD4	121512	hgsc.bcm.edu	hg19	12	32751494	32751494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	FGD4	NM_139241	exon5	c.G664A	p.V222I	GCTTATGTCAACC	.	97.0	40.0	91.0	0.0	.	86	.	.	Atlas-SNP
ACACB	32	hgsc.bcm.edu	hg19	12	109614034	109614034	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	ACACB	NM_001093	exon8	c.A1403T	p.E468V	AGGCTGAGAGTGC	.	151.0	54.0	118.0	0.0	.	330	.	.	Atlas-SNP
PCCA	5095	hgsc.bcm.edu	hg19	13	100861682	100861682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	PCCA	NM_001178004	exon7	c.G565T	p.V189F	GCAGAGGTTAATA	.	112.0	44.0	90.0	0.0	.	59	.	.	Atlas-SNP
TEP1	7011	hgsc.bcm.edu	hg19	14	20852626	20852626	+	Missense_Mutation	SNP	T	T	C	rs201494870	bycluster	TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	TEP1	NM_007110	exon23	c.A3263G	p.Y1088C	CCAACATAGGGCC	.	63.0	26.0	42.0	0.0	.	224	.	T|0.999;C|0.001	Atlas-SNP
ZNF219	51222	hgsc.bcm.edu	hg19	14	21561409	21561409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	ZNF219	NM_001102454	exon3	c.C47T	p.S16L	GGCGGCGACGGCG	.	18.0	10.0	25.0	0.0	.	28	.	.	Atlas-SNP
EML5	161436	hgsc.bcm.edu	hg19	14	89202828	89202828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	EML5	NM_183387	exon7	c.T929C	p.V310A	TCTTGCACCACAA	.	202.0	89.0	167.0	0.0	.	141	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	34021159	34021159	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	RYR3	NM_001243996	exon47	c.A7135G	p.T2379A	GATCAAACTTTTC	.	60.0	10.0	84.0	0.0	.	760	.	.	Atlas-SNP
AXIN1	8312	hgsc.bcm.edu	hg19	16	396740	396740	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	AXIN1	NM_181050	exon2	c.C286T	p.Q96X	CATCTTGGTCATC	.	28.0	21.0	54.0	0.0	.	290	.	.	Atlas-SNP
KRT17	3872	hgsc.bcm.edu	hg19	17	39777023	39777023	+	Missense_Mutation	SNP	G	G	A	rs374932182		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	KRT17,right_upper_lobe,carcinoma,0,1	KRT17	NM_000422	exon6	c.C1069T	p.R357C	CGCAGCGAAGCTG	.	130.0	52.0	136.0	0.0	.	57	.	.	Atlas-SNP
SDK2	54549	hgsc.bcm.edu	hg19	17	71390374	71390374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	SDK2	NM_001144952	exon26	c.C3682A	p.R1228S	CGTTGCGATCAGC	.	58.0	24.0	42.0	0.0	.	219	.	.	Atlas-SNP
SLC38A10	124565	hgsc.bcm.edu	hg19	17	79257223	79257223	+	Silent	SNP	G	G	A	rs138694564	bycluster;byfrequency;alternate_allele	TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	SLC38A10	NM_001037984	exon4	c.C343T	p.L115L	CGAACAGCCGGGC	.	74.0	15.0	96.0	0.0	.	133	.	G|0.999;T|0.001	Atlas-SNP
MC4R	4160	hgsc.bcm.edu	hg19	18	58039334	58039334	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	MC4R	NM_005912	exon1	c.C249A	p.I83I	GCTGCAGATGAAA	.	72.0	5.0	92.0	0.0	.	49	.	.	Atlas-SNP
CBLN2	147381	hgsc.bcm.edu	hg19	18	70209069	70209069	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	CBLN2	NM_182511	exon3	c.C327T	p.S109S	GCGGTTGCTCATC	.	34.0	9.0	29.0	0.0	.	41	.	.	Atlas-SNP
MBP	4155	hgsc.bcm.edu	hg19	18	74817196	74817196	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	MBP	NM_001025100	exon2	c.C22T	p.R8X	ATTCTCGTTTGCC	.	83.0	30.0	100.0	0.0	.	45	.	.	Atlas-SNP
WIZ	58525	hgsc.bcm.edu	hg19	19	15538111	15538111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	WIZ	NM_021241	exon4	c.A763G	p.K255E	TCATCTTGGCCAG	.	79.0	35.0	78.0	0.0	.	152	.	.	Atlas-SNP
VSTM2B	342865	hgsc.bcm.edu	hg19	19	30054814	30054814	+	Missense_Mutation	SNP	G	G	C	rs140018368	by1000genomes;alternate_allele	TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	VSTM2B	NM_001146339	exon5	c.G831C	p.K277N	GCATAAGTTCCTG	.	75.0	23.0	53.0	0.0	.	15	.	G|1.000;T|0.000	Atlas-SNP
KIRREL2	84063	hgsc.bcm.edu	hg19	19	36351887	36351887	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	KIRREL2	NM_199180	exon8	c.G1005A	p.W335X	CGCCTGGCGCGGG	.	62.0	32.0	45.0	0.0	.	170	.	.	Atlas-SNP
CA11	770	hgsc.bcm.edu	hg19	19	49143044	49143044	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	CA11,NS,carcinoma,0,1	CA11	NM_001217	exon6	c.567+1G>A	.	CGCTCACGTTGAC	.	106.0	45.0	92.0	0.0	.	29	.	.	Atlas-SNP
ZNF329	79673	hgsc.bcm.edu	hg19	19	58639289	58639289	+	Silent	SNP	G	G	T	rs143513293	bycluster;by1000genomes;alternate_allele	TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	ZNF329,caecum,carcinoma,0,1	ZNF329	NM_024620	exon4	c.C1582A	p.R528R	GATGTCGAACAAG	.	116.0	39.0	98.0	0.0	.	70	.	G|1.000;A|0.000	Atlas-SNP
BPIFA2	140683	hgsc.bcm.edu	hg19	20	31767467	31767467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	.	NM_080574	exon7	c.G703T	p.V235F	CAGCAGGTCGTCG	.	65.0	25.0	50.0	0.0	.	.	.	.	Atlas-SNP
ACTL10	170487	hgsc.bcm.edu	hg19	20	32255993	32255993	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	.	NM_001024675	exon1	c.C690T	p.A230A	TCGGGCCATGTAC	.	82.0	38.0	64.0	0.0	.	.	.	.	Atlas-SNP
RALY	22913	hgsc.bcm.edu	hg19	20	32664877	32664877	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	RALY	NM_016732	exon8	c.C702T	p.G234G	CGGCGGCGGTGGT	.	127.0	6.0	110.0	0.0	.	44	.	.	Atlas-SNP
ZNF280B	140883	hgsc.bcm.edu	hg19	22	22842492	22842492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	ZNF280B	NM_080764	exon4	c.G1232T	p.R411I	GACGATCTATAAT	.	173.0	77.0	148.0	0.0	.	67	.	.	Atlas-SNP
CXorf40A	91966	hgsc.bcm.edu	hg19	X	148627336	148627336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	CXorf40A	NM_178124	exon4	c.C160T	p.R54W	GCCTGGCGGGAGC	.	274.0	234.0	232.0	0.0	.	15	.	.	Atlas-SNP
IRS1	3667	hgsc.bcm.edu	hg19	2	227661977	227661994	+	In_Frame_Del	DEL	CGGTGGCCATTGCCACCC	CGGTGGCCATTGCCACCC	-	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	CGGTGGCCATTGCCACCC	CGGTGGCCATTGCCACCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	IRS1	NM_005544	exon1	c.1462_1479del	p.488_493del	.	.	71.0	19.0	77.0	0.0	.	141	.	.	Atlas-INDEL
PAQR8	85315	hgsc.bcm.edu	hg19	6	52268597	52268611	+	In_Frame_Del	DEL	TATGCCAAATATCGT	TATGCCAAATATCGT	-	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	TATGCCAAATATCGT	TATGCCAAATATCGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	PAQR8	NM_133367	exon2	c.585_599del	p.195_200del	.	.	86.0	25.0	78.0	0.0	.	31	.	.	Atlas-INDEL
ITGB3	3690	hgsc.bcm.edu	hg19	17	45367587	45367591	+	Frame_Shift_Del	DEL	GTTCT	GTTCT	-	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	GTTCT	GTTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	ITGB3	NM_000212	exon8	c.1071_1075del	p.357_359del	.	.	59.0	29.0	68.0	0.0	.	157	.	.	Atlas-INDEL
SVEP1	79987	hgsc.bcm.edu	hg19	9	113137745	113137746	+	Splice_Site	INS	-	-	AAAAAA	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	SVEP1	NM_153366	exon47	c.10505-2->TTTTTT	.	.	.	154.0	11.0	119.0	0.0	.	326	.	.	Atlas-INDEL
NEFH	4744	hgsc.bcm.edu	hg19	22	29885591	29885592	+	In_Frame_Ins	INS	-	-	CCTGAGAAGGCCAAGTCC	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.,2	NEFH	NM_021076	exon4	c.1962_1963insCCTGAGAAGGCCAAGTCC	p.S654delinsSPEKAKS	.	.	256.0	126.0	217.0	0.0	.	178	.	.	Atlas-INDEL
A2M	2	hgsc.bcm.edu	hg19	12	9227372	9227384	+	In_Frame_Del	DEL	AGAGTTGTCTTAA	AGAGTTGTCTTAA	-	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	AGAGTTGTCTTAA	AGAGTTGTCTTAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	A2M	NM_000014	exon29	c.3533_3541del	p.1178_1181del	.	.	112.0	33.0	116.0	0.0	.	180	.	.	Atlas-INDEL
KCTD20	222658	hgsc.bcm.edu	hg19	6	36454696	36454698	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	KCTD20	NM_173562	exon8	c.1003_1005del	p.335_335del	.	.	88.0	25.0	95.0	0.0	.	37	.	.	Atlas-INDEL
KCTD20	222658	hgsc.bcm.edu	hg19	6	36454686	36454694	+	In_Frame_Del	DEL	AAGAGAAGG	AAGAGAAGG	-	novel		TCGA-DD-AAE1-01A-11D-A40R-10	TCGA-DD-AAE1-10A-01D-A40U-10	AAGAGAAGG	AAGAGAAGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	55f49128-beb9-408f-8a1b-737659403573	9109a16c-3ae7-492e-8de3-bece8e8322d0	.	KCTD20	NM_173562	exon8	c.993_1001del	p.331_334del	.	.	89.0	25.0	94.0	0.0	.	37	.	.	Atlas-INDEL
