Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
FBXO42	54455	hgsc.bcm.edu	hg19	1	16579610	16579610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	FBXO42	NM_018994	exon8	c.G902A	p.G301E	CCACACCCTCCGA	.	316.0	16.0	173.0	0.0	.	53	.	.	Atlas-SNP
AKR7A3	22977	hgsc.bcm.edu	hg19	1	19612450	19612450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	AKR7A3	NM_012067	exon3	c.G439T	p.A147S	CCCAGGCTGCATA	.	180.0	68.0	135.0	0.0	.	30	.	.	Atlas-SNP
CHRNB2	1141	hgsc.bcm.edu	hg19	1	154548297	154548297	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	CHRNB2	NM_000748	exon6	c.T1398C	p.F466F	GATCTTTGTCTTT	.	120.0	33.0	61.0	0.0	.	74	.	.	Atlas-SNP
AXDND1	126859	hgsc.bcm.edu	hg19	1	179504037	179504037	+	Missense_Mutation	SNP	G	G	C	rs6425573	bycluster;by2hit2allele;byhapmap	TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	AXDND1	NM_144696	exon25	c.G2971C	p.E991Q	GAAGAAGAACAAC	.	583.0	31.0	332.0	0.0	.	142	.	G|1.000;|0.000	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	hg19	1	240371477	240371477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	FMN2	NM_020066	exon5	c.C3365T	p.P1122L	CTCCTCCCCCTCT	.	136.0	42.0	87.0	0.0	.	451	.	.	Atlas-SNP
CHML	1122	hgsc.bcm.edu	hg19	1	241798135	241798135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	CHML	NM_001821	exon1	c.G934A	p.D312N	ATTCATCAGGATG	.	197.0	78.0	109.0	0.0	.	82	.	.	Atlas-SNP
PSME4	23198	hgsc.bcm.edu	hg19	2	54163923	54163923	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	PSME4	NM_014614	exon6	c.A737T	p.Q246L	AGATTTTGCACTG	.	646.0	249.0	469.0	0.0	.	247	.	.	Atlas-SNP
RFX8	731220	hgsc.bcm.edu	hg19	2	102018902	102018902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	RFX8	NM_001145664	exon11	c.A1241G	p.N414S	ACCTTATTGCCCA	.	119.0	8.0	86.0	0.0	.	16	.	.	Atlas-SNP
ARHGEF4	50649	hgsc.bcm.edu	hg19	2	131785570	131785570	+	Silent	SNP	C	C	T	rs372979735		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	ARHGEF4,colon,carcinoma,0,2	ARHGEF4	NM_032995	exon5	c.C480T	p.S160S	GGGGAGCGAGGAG	.	121.0	76.0	144.0	0.0	.	89	.	.	Atlas-SNP
NCL	4691	hgsc.bcm.edu	hg19	2	232320222	232320222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	NCL	NM_005381	exon13	c.G1946T	p.G649V	CCTTCACCCTTAG	.	95.0	35.0	66.0	0.0	.	80	.	.	Atlas-SNP
SLC22A14	9389	hgsc.bcm.edu	hg19	3	38354541	38354541	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	SLC22A14	NM_004803	exon5	c.G996A	p.E332E	GAAGGAGGCCAAG	.	163.0	60.0	94.0	0.0	.	64	.	.	Atlas-SNP
CYP8B1	1582	hgsc.bcm.edu	hg19	3	42917206	42917206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	CYP8B1,middle_lobe,carcinoma,0,1	CYP8B1	NM_004391	exon1	c.C103A	p.L35M	TGTCCAGAGGGGG	.	113.0	83.0	52.0	0.0	.	59	.	.	Atlas-SNP
DHX30	22907	hgsc.bcm.edu	hg19	3	47882619	47882619	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	DHX30	NM_138615	exon7	c.T619G	p.F207V	ACCGACTTCTTGT	.	173.0	67.0	95.0	0.0	.	101	.	.	Atlas-SNP
STAB1	23166	hgsc.bcm.edu	hg19	3	52535661	52535661	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	STAB1	NM_015136	exon3	c.G223C	p.V75L	TACGAAGTACAGC	.	186.0	57.0	124.0	0.0	.	178	.	.	Atlas-SNP
HGFAC	3083	hgsc.bcm.edu	hg19	4	3446146	3446146	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	HGFAC	NM_001528	exon6	c.G707A	p.W236X	GGACCTGGTGCGA	.	215.0	75.0	150.0	0.0	.	69	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	hg19	4	55573355	55573355	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	KIT	NM_000222	exon6	c.A1017T	p.A339A	TGAAGCATTCCCC	.	347.0	141.0	237.0	0.0	.	7396	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155411569	155411569	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	DCHS2	NM_001142552	exon1	c.C939T	p.A313A	GACCTCGGCGCCC	.	52.0	21.0	32.0	0.0	.	594	.	.	Atlas-SNP
C5orf42	65250	hgsc.bcm.edu	hg19	5	37224832	37224832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	C5orf42	NM_023073	exon13	c.C2302A	p.L768I	TCCAGAGAATAAG	.	137.0	15.0	123.0	0.0	.	422	.	.	Atlas-SNP
RICTOR	253260	hgsc.bcm.edu	hg19	5	39074458	39074458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	RICTOR	NM_152756	exon1	c.C22T	p.R8C	GAGAGCGGCCGCG	.	165.0	62.0	105.0	0.0	.	182	.	.	Atlas-SNP
PCDHA8	56140	hgsc.bcm.edu	hg19	5	140222700	140222700	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	PCDHA8_ENST00000531613,NS,carcinoma,0,2	PCDHA8	NM_031856	exon1	c.C1794T	p.D598D	AGTGGACGCCGAC	.	137.0	48.0	84.0	0.0	.	366	.	.	Atlas-SNP
ARAP3	64411	hgsc.bcm.edu	hg19	5	141036195	141036195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	ARAP3	NM_022481	exon27	c.G3665A	p.R1222H	CTCTCACGTCGGA	.	209.0	67.0	114.0	0.0	.	139	.	.	Atlas-SNP
OR10C1	442194	hgsc.bcm.edu	hg19	6	29408146	29408146	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	OR10C1	NM_013941	exon1	c.C354T	p.A118A	CATGGCCTATGAC	.	75.0	34.0	61.0	0.0	.	58	.	.	Atlas-SNP
PTPRK	5796	hgsc.bcm.edu	hg19	6	128388773	128388773	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	PTPRK,NS,neuroblastoma,0,1	PTPRK	NM_001135648	exon12	c.C2048G	p.A683G	AACGGGGCAGGCT	.	108.0	38.0	85.0	0.0	.	330	.	.	Atlas-SNP
TBP	6908	hgsc.bcm.edu	hg19	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	TBP	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	67.0	5.0	54.0	0.0	.	58	.	.	Atlas-SNP
PHTF2	57157	hgsc.bcm.edu	hg19	7	77558460	77558460	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	PHTF2	NM_001127357	exon10	c.G1052T	p.R351L	GCTCTCGCTGTTC	.	182.0	73.0	140.0	0.0	.	104	.	.	Atlas-SNP
WDR60	55112	hgsc.bcm.edu	hg19	7	158734820	158734820	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	WDR60	NM_018051	exon24	c.C2983T	p.Q995X	GCCAAACAGCAGG	.	25.0	17.0	34.0	0.0	.	94	.	.	Atlas-SNP
ADAM7	8756	hgsc.bcm.edu	hg19	8	24339683	24339683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	ADAM7	NM_003817	exon9	c.C734T	p.T245M	ATGTGACGTTGGT	.	160.0	28.0	140.0	0.0	.	165	.	.	Atlas-SNP
CPA6	57094	hgsc.bcm.edu	hg19	8	68536486	68536486	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	CPA6	NM_020361	exon2	c.T117A	p.G39G	TTTATCACTACAA	.	105.0	34.0	81.0	0.0	.	69	.	.	Atlas-SNP
AARD	441376	hgsc.bcm.edu	hg19	8	117954908	117954908	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	.	NM_001025357	exon2	c.A436T	p.S146C	TCCCAAAGCCCAA	.	137.0	10.0	81.0	0.0	.	.	.	.	Atlas-SNP
TRPM6	140803	hgsc.bcm.edu	hg19	9	77362825	77362825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	TRPM6	NM_017662	exon31	c.A5063G	p.K1688R	GAACTTTTCAGCC	.	76.0	30.0	39.0	0.0	.	377	.	.	Atlas-SNP
SKIDA1	387640	hgsc.bcm.edu	hg19	10	21805720	21805720	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	.	NM_207371	exon4	c.T1032C	p.H344H	GTGGTGATGGTGG	.	62.0	5.0	28.0	0.0	.	.	.	.	Atlas-SNP
GJD4	219770	hgsc.bcm.edu	hg19	10	35897262	35897262	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	GJD4	NM_153368	exon2	c.G821C	p.G274A	GGGAGGGGGCTGG	.	56.0	19.0	49.0	0.0	.	38	.	.	Atlas-SNP
A1CF	29974	hgsc.bcm.edu	hg19	10	52573658	52573658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	A1CF,NS,carcinoma,0,1	A1CF	NM_001198819	exon12	c.C1330T	p.P444S	TGACAGGATTCAT	.	154.0	52.0	117.0	0.0	.	190	.	.	Atlas-SNP
PRDX3	10935	hgsc.bcm.edu	hg19	10	120938299	120938299	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	PRDX3	NM_006793	exon1	c.G4C	p.A2P	CAGCCGCCATCTT	.	162.0	60.0	117.0	0.0	.	15	.	.	Atlas-SNP
GPR123	84435	hgsc.bcm.edu	hg19	10	134941950	134941950	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	GPR123	NM_001083909	exon7	c.G618A	p.G206G	CCCAGGGCGCAGG	.	113.0	47.0	70.0	0.0	.	118	.	.	Atlas-SNP
ACP2	53	hgsc.bcm.edu	hg19	11	47267056	47267056	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	ACP2	NM_001610	exon5	c.C518G	p.P173R	TACTCTGGTGTCT	.	162.0	33.0	100.0	0.0	.	36	.	.	Atlas-SNP
TMEM179B	374395	hgsc.bcm.edu	hg19	11	62554934	62554934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	TMEM179B	NM_199337	exon1	c.C31A	p.L11I	GTCGAGCTTGCGC	.	35.0	12.0	14.0	0.0	.	13	.	.	Atlas-SNP
GRIA4	2893	hgsc.bcm.edu	hg19	11	105842662	105842662	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	GRIA4	NM_000829	exon15	c.T2316A	p.V772V	TGCCGTTTTGAAA	.	205.0	78.0	143.0	0.0	.	380	.	.	Atlas-SNP
ALX1	8092	hgsc.bcm.edu	hg19	12	85695157	85695157	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	ALX1	NM_006982	exon4	c.T885C	p.F295F	TGCATTTGAAACA	.	138.0	55.0	128.0	0.0	.	61	.	.	Atlas-SNP
ZNF140	7699	hgsc.bcm.edu	hg19	12	133682847	133682847	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	ZNF140	NM_003440	exon5	c.G984A	p.P328P	AACCCCGTATGAA	.	154.0	78.0	115.0	0.0	.	18	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	36242504	36242504	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	NBEA	NM_015678	exon57	c.8599-1G>T	.	TCTGAAGGCCATT	.	68.0	35.0	82.0	0.0	.	340	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	36242505	36242505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	NBEA	NM_015678	exon57	c.G8599T	p.A2867S	CTGAAGGCCATTC	.	67.0	34.0	83.0	0.0	.	340	.	.	Atlas-SNP
SLC10A2	6555	hgsc.bcm.edu	hg19	13	103718590	103718590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	SLC10A2	NM_000452	exon1	c.C10A	p.P4T	TGTTCGGATCATT	.	65.0	24.0	48.0	0.0	.	67	.	.	Atlas-SNP
SEC23A	10484	hgsc.bcm.edu	hg19	14	39517887	39517887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	SEC23A	NM_006364	exon15	c.G1706A	p.R569K	GAAAATCTGAAGG	.	99.0	37.0	89.0	0.0	.	73	.	.	Atlas-SNP
MIA2	117153	hgsc.bcm.edu	hg19	14	39716435	39716435	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	MIA2	NM_054024	exon4	c.T657A	p.A219A	TTCAGCTGTGTCT	.	258.0	107.0	171.0	0.0	.	82	.	.	Atlas-SNP
ZBTB25	7597	hgsc.bcm.edu	hg19	14	64954457	64954457	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	ZBTB25	NM_006977	exon3	c.C492T	p.D164D	GGGGTGGTCACCC	.	156.0	26.0	121.0	0.0	.	27	.	.	Atlas-SNP
DAPK2	23604	hgsc.bcm.edu	hg19	15	64204312	64204312	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	DAPK2	NM_014326	exon10	c.T943A	p.W315R	CCTTCCACCGCCT	.	134.0	45.0	79.0	0.0	.	31	.	.	Atlas-SNP
ABCC6	368	hgsc.bcm.edu	hg19	16	16248764	16248764	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	ABCC6	NM_001171	exon28	c.A4007C	p.H1336P	AGTGTGTGCAGCC	.	189.0	53.0	99.0	0.0	.	110	.	.	Atlas-SNP
ABCC6	368	hgsc.bcm.edu	hg19	16	16255355	16255355	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	ABCC6	NM_001171	exon25	c.G3573T	p.V1191V	GCTCAGCACAGCA	.	275.0	136.0	127.0	0.0	.	110	.	.	Atlas-SNP
ABCC6	368	hgsc.bcm.edu	hg19	16	16255356	16255356	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	ABCC6	NM_001171	exon25	c.T3572G	p.V1191G	CTCAGCACAGCAC	.	274.0	134.0	128.0	0.0	.	110	.	.	Atlas-SNP
KATNB1	10300	hgsc.bcm.edu	hg19	16	57790767	57790767	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	KATNB1	NM_005886	exon20	c.T1877G	p.I626S	AGAGCATCAGCGG	.	132.0	34.0	66.0	0.0	.	35	.	.	Atlas-SNP
HYDIN	54768	hgsc.bcm.edu	hg19	16	70954810	70954810	+	Missense_Mutation	SNP	G	G	A	rs367546874		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	HYDIN	NM_001270974	exon46	c.C7469T	p.A2490V	TGGGGCGCTTCCT	.	41.0	16.0	31.0	0.0	.	788	.	.	Atlas-SNP
METTL16	79066	hgsc.bcm.edu	hg19	17	2380980	2380980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	METTL16	NM_024086	exon3	c.G328A	p.G110S	ATATACCTATGTC	.	169.0	7.0	129.0	0.0	.	75	.	.	Atlas-SNP
LPO	4025	hgsc.bcm.edu	hg19	17	56344913	56344913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	LPO	NM_006151	exon12	c.G1897A	p.G633S	CTCTTGGGCAAGC	.	124.0	49.0	71.0	0.0	.	73	.	.	Atlas-SNP
EVPL	2125	hgsc.bcm.edu	hg19	17	74005570	74005570	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	EVPL	NM_001988	exon22	c.A3716T	p.E1239V	AGGACCTCCAGGT	.	79.0	9.0	36.0	0.0	.	155	.	.	Atlas-SNP
TSHZ1	10194	hgsc.bcm.edu	hg19	18	73000060	73000060	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	TSHZ1	NM_005786	exon2	c.C2563T	p.L855L	CTCATCCTGCAGG	.	66.0	21.0	46.0	0.0	.	104	.	.	Atlas-SNP
ZNF516	9658	hgsc.bcm.edu	hg19	18	74154504	74154504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	ZNF516	NM_014643	exon3	c.G507T	p.E169D	CTTGGCCTCCCCC	.	37.0	16.0	19.0	0.0	.	102	.	.	Atlas-SNP
HMHA1	23526	hgsc.bcm.edu	hg19	19	1080975	1080975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	HMHA1	NM_001258328	exon17	c.G2150A	p.R717H	CGGCCCGTACTCA	.	203.0	48.0	121.0	0.0	.	78	.	.	Atlas-SNP
NOTCH3	4854	hgsc.bcm.edu	hg19	19	15291624	15291624	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	NOTCH3	NM_000435	exon19	c.T3010G	p.C1004G	GGCTGCACCAATC	.	74.0	33.0	64.0	0.0	.	340	.	.	Atlas-SNP
ZFP82	284406	hgsc.bcm.edu	hg19	19	36884752	36884752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	ZFP82	NM_133466	exon5	c.C490A	p.H164N	CAAAATGAAGTCT	.	145.0	47.0	121.0	0.0	.	71	.	.	Atlas-SNP
SARS2	54938	hgsc.bcm.edu	hg19	19	39421215	39421215	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	SARS2	NM_001145901	exon1	c.A162G	p.A54A	AGGGAGTGCGCTG	.	80.0	30.0	46.0	0.0	.	33	.	.	Atlas-SNP
SAMD4B	55095	hgsc.bcm.edu	hg19	19	39867144	39867144	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	SAMD4B	NM_018028	exon8	c.C975T	p.Y325Y	GAGCTACGAGGAG	.	74.0	28.0	47.0	0.0	.	48	.	.	Atlas-SNP
IRF2BP1	26145	hgsc.bcm.edu	hg19	19	46388496	46388496	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	IRF2BP1	NM_015649	exon1	c.G537T	p.L179L	CAGCGTCAGGCCT	.	62.0	28.0	35.0	0.0	.	23	.	.	Atlas-SNP
CD93	22918	hgsc.bcm.edu	hg19	20	23066284	23066284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	CD93	NM_012072	exon1	c.C546A	p.F182L	GAAGCTGAACTTG	.	79.0	31.0	49.0	0.0	.	84	.	.	Atlas-SNP
ACTR5	79913	hgsc.bcm.edu	hg19	20	37378813	37378813	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	ACTR5	NM_024855	exon2	c.C536A	p.S179X	AGAACTCGATGTG	.	192.0	77.0	122.0	0.0	.	44	.	.	Atlas-SNP
GPR143	4935	hgsc.bcm.edu	hg19	X	9709456	9709456	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	GPR143	NM_000273	exon7	c.T807G	p.Y269X	CTCAAGATAGAAT	.	601.0	228.0	473.0	0.0	.	37	.	.	Atlas-SNP
ZC3H12B	340554	hgsc.bcm.edu	hg19	X	64722582	64722582	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	ZC3H12B	NM_001010888	exon5	c.T2004A	p.T668T	ATCAACTGGAACA	.	152.0	14.0	92.0	0.0	.	144	.	.	Atlas-SNP
ZC3H12B	340554	hgsc.bcm.edu	hg19	X	64722584	64722584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	ZC3H12B	NM_001010888	exon5	c.G2006A	p.G669E	CAACTGGAACACG	.	151.0	14.0	94.0	0.0	.	144	.	.	Atlas-SNP
MAZ	4150	hgsc.bcm.edu	hg19	16	29821424	29821444	+	In_Frame_Del	DEL	GCGGCAGCGGCAGCGGCGGCA	GCGGCAGCGGCAGCGGCGGCA	-	rs370462022	alternate_allele	TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	GCGGCAGCGGCAGCGGCGGCA	GCGGCAGCGGCAGCGGCGGCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	MAZ	NM_002383	exon5	c.1305_1325del	p.435_442del	.	.	141.0	44.0	66.0	0.0	.	48	.	.	Atlas-INDEL
PDCD6IP	10015	hgsc.bcm.edu	hg19	3	33866810	33866811	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	PDCD6IP	NM_001256192	exon5	c.594_595insT	p.V198fs	.	.	174.0	11.0	107.0	0.0	.	62	.	.	Atlas-INDEL
CC2D2A	57545	hgsc.bcm.edu	hg19	4	15517558	15517559	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	CC2D2A,caecum,carcinoma,0,1	CC2D2A	NM_001080522	exon11	c.948_949insG	p.T316fs	.	.	146.0	53.0	106.0	0.0	.	158	.	.	Atlas-INDEL
AHDC1	27245	hgsc.bcm.edu	hg19	1	27878204	27878206	+	In_Frame_Del	DEL	ACT	ACT	-	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	ACT	ACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	AHDC1	NM_001029882	exon6	c.422_424del	p.141_142del	.	.	173.0	48.0	123.0	0.0	.	98	.	.	Atlas-INDEL
KRTAP10-3	386682	hgsc.bcm.edu	hg19	21	45978509	45978509	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	KRTAP10-3	NM_198696	exon1	c.91delT	p.C31fs	.	.	79.0	29.0	39.0	0.0	.	17	.	.	Atlas-INDEL
CAMTA1	23261	hgsc.bcm.edu	hg19	1	7725035	7725036	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-DD-AAE4-01A-11D-A40R-10	TCGA-DD-AAE4-10A-01D-A40U-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef673fe7-a934-4041-8258-a4af537977c6	ff5a3218-ca2c-4eac-a8cb-c88524c95f7b	.	CAMTA1	NM_015215	exon9	c.2427_2428del	p.809_810del	.	.	149.0	48.0	104.0	0.0	.	226	.	.	Atlas-INDEL
