Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
SLC2A5	6518	hgsc.bcm.edu	hg19	1	9098489	9098489	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SLC2A5	NM_003039	exon11	c.1174+1G>A	.	TACGTACTGGGCC	.	65.0	20.0	70.0	0.0	.	77	.	.	Atlas-SNP
LRRC38	126755	hgsc.bcm.edu	hg19	1	13839858	13839858	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	LRRC38	NM_001010847	exon1	c.C231T	p.I77I	GTAGAAGATGAAG	.	135.0	40.0	150.0	0.0	.	12	.	.	Atlas-SNP
ARID1A	8289	hgsc.bcm.edu	hg19	1	27101213	27101213	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ARID1A	NM_006015	exon18	c.C4495T	p.Q1499X	ATGTGGCAGGGGC	.	97.0	5.0	68.0	0.0	.	842	.	.	Atlas-SNP
RAB42	115273	hgsc.bcm.edu	hg19	1	28920207	28920207	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	RAB42	NM_001193532	exon2	c.T235A	p.C79S	CCCAGGTGCATCA	.	38.0	10.0	34.0	0.0	.	10	.	.	Atlas-SNP
SNRNP40	9410	hgsc.bcm.edu	hg19	1	31766196	31766196	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SNRNP40	NM_004814	exon3	c.142-1G>T	.	AGGTCCCTAAACA	.	102.0	22.0	81.0	0.0	.	18	.	.	Atlas-SNP
GNL2	29889	hgsc.bcm.edu	hg19	1	38061409	38061409	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	GNL2	NM_013285	exon1	c.G15A	p.K5K	TTTGTACTTGGGC	.	61.0	13.0	73.0	0.0	.	58	.	.	Atlas-SNP
TOE1	114034	hgsc.bcm.edu	hg19	1	45809148	45809148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	TOE1	NM_025077	exon8	c.G1307A	p.G436E	GGGATGGATTGCA	.	88.0	28.0	59.0	0.0	.	27	.	.	Atlas-SNP
MAST2	23139	hgsc.bcm.edu	hg19	1	46497890	46497890	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	MAST2	NM_015112	exon25	c.A3228T	p.P1076P	GTCCCCACATTCT	.	77.0	25.0	58.0	0.0	.	136	.	.	Atlas-SNP
NRD1	4898	hgsc.bcm.edu	hg19	1	52281991	52281991	+	Silent	SNP	T	T	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	NRD1	NM_002525	exon13	c.A1636C	p.R546R	TTTTCCTAAGGAA	.	428.0	118.0	236.0	0.0	.	89	.	.	Atlas-SNP
MYSM1	114803	hgsc.bcm.edu	hg19	1	59158557	59158557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	MYSM1	NM_001085487	exon3	c.T194C	p.I65T	TTCTCAATAACAG	.	66.0	18.0	35.0	0.0	.	50	.	.	Atlas-SNP
DOCK7	85440	hgsc.bcm.edu	hg19	1	62941590	62941590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	DOCK7	NM_001271999	exon45	c.G5716A	p.E1906K	ATGGCTCCACATA	.	64.0	16.0	27.0	0.0	.	184	.	.	Atlas-SNP
ST6GALNAC5	81849	hgsc.bcm.edu	hg19	1	77334301	77334301	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ST6GALNAC5	NM_030965	exon2	c.A135G	p.Q45Q	GCAGCAACAGCAG	.	98.0	4.0	131.0	0.0	.	59	.	.	Atlas-SNP
WDR63	126820	hgsc.bcm.edu	hg19	1	85551546	85551546	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	WDR63	NM_145172	exon7	c.A573G	p.E191E	AAGTGAATTTGGT	.	265.0	82.0	147.0	0.0	.	91	.	.	Atlas-SNP
CSF1	1435	hgsc.bcm.edu	hg19	1	110464543	110464543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CSF1	NM_172210	exon5	c.G471T	p.K157N	AACAAAGAATCTC	.	242.0	67.0	211.0	0.0	.	40	.	.	Atlas-SNP
LRIF1	55791	hgsc.bcm.edu	hg19	1	111492489	111492489	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	LRIF1	NM_018372	exon3	c.A1853C	p.E618A	TCTCCTTCCTTCA	.	79.0	21.0	47.0	0.0	.	65	.	.	Atlas-SNP
NRAS	4893	hgsc.bcm.edu	hg19	1	115256463	115256463	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	NRAS	NM_002524	exon3	c.C248G	p.A83G	TTGATGGCAAATA	.	84.0	28.0	64.0	0.0	.	3766	.	.	Atlas-SNP
NBPF10	100132406	hgsc.bcm.edu	hg19	1	145304497	145304497	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	NBPF10	NM_001039703	exon10	c.A1430C	p.E477A	TGGAGGAATGTGC	.	125.0	19.0	68.0	0.0	.	221	.	.	Atlas-SNP
SLC27A3	11000	hgsc.bcm.edu	hg19	1	153747926	153747926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SLC27A3	NM_024330	exon1	c.T94C	p.F32L	GGGATGTTTGCGA	.	42.0	13.0	51.0	0.0	.	42	.	.	Atlas-SNP
FAM189B	10712	hgsc.bcm.edu	hg19	1	155220590	155220590	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	FAM189B	NM_006589	exon9	c.G987A	p.L329L	CAGCACCAGAGAC	.	75.0	30.0	63.0	0.0	.	51	.	.	Atlas-SNP
PKLR	5313	hgsc.bcm.edu	hg19	1	155269945	155269945	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.,1	PKLR	NM_000298	exon2	c.T227G	p.L76R	ATGTCCAGTAGGC	.	156.0	36.0	85.0	0.0	.	70	.	.	Atlas-SNP
PMF1	11243	hgsc.bcm.edu	hg19	1	156195414	156195414	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	PMF1	NM_001199654	exon2	c.A228G	p.K76K	TGTGAAACAGGCC	.	155.0	54.0	101.0	0.0	.	12	.	.	Atlas-SNP
NIT1	4817	hgsc.bcm.edu	hg19	1	161089103	161089103	+	Missense_Mutation	SNP	G	G	C	rs149045755	alternate_allele	TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	NIT1	NM_001185092	exon3	c.G278C	p.R93P	TTGCACGGGACCC	.	105.0	22.0	98.0	0.0	.	41	.	G|1.000;A|0.000	Atlas-SNP
TBX19	9095	hgsc.bcm.edu	hg19	1	168282157	168282157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	TBX19	NM_005149	exon8	c.A1264G	p.T422A	ACCTGGACAGCAG	.	86.0	4.0	94.0	0.0	.	68	.	.	Atlas-SNP
METTL13	51603	hgsc.bcm.edu	hg19	1	171751168	171751168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	METTL13	NM_015935	exon1	c.T61C	p.F21L	AAGTTCTTCCAGC	.	118.0	28.0	100.0	0.0	.	67	.	.	Atlas-SNP
EDEM3	80267	hgsc.bcm.edu	hg19	1	184681698	184681698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	EDEM3	NM_025191	exon14	c.T1405C	p.Y469H	AAAGATATTTAAA	.	186.0	67.0	59.0	0.0	.	63	.	.	Atlas-SNP
SYT14	255928	hgsc.bcm.edu	hg19	1	210187041	210187041	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SYT14	NM_001146264	exon4	c.T260G	p.L87R	TGCTCCTTTTTCT	.	97.0	19.0	40.0	0.0	.	89	.	.	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	hg19	1	214811265	214811265	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CENPF	NM_016343	exon11	c.A1503C	p.E501D	CAGAGAAGTCTGC	.	575.0	27.0	309.0	0.0	.	321	.	.	Atlas-SNP
EPRS	2058	hgsc.bcm.edu	hg19	1	220156627	220156627	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	EPRS	NM_004446	exon22	c.C3204A	p.I1068I	TTTCTTGATCTCA	.	294.0	97.0	188.0	0.0	.	140	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237948162	237948162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	RYR2,right_upper_lobe,carcinoma,0,1	RYR2	NM_001035	exon90	c.C13150A	p.L4384M	CTGGATCTGAAGA	.	92.0	28.0	51.0	0.0	.	1273	.	.	Atlas-SNP
AKT3	10000	hgsc.bcm.edu	hg19	1	243809237	243809237	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	AKT3	NM_001206729	exon5	c.A387T	p.G129G	TTCCTCTCCTATA	.	36.0	13.0	23.0	0.0	.	177	.	.	Atlas-SNP
SH3YL1	26751	hgsc.bcm.edu	hg19	2	231165	231165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SH3YL1	NM_001159597	exon7	c.A560G	p.Y187C	ATGTCATAAGCTC	.	95.0	25.0	43.0	0.0	.	49	.	.	Atlas-SNP
PPM1G	5496	hgsc.bcm.edu	hg19	2	27606940	27606940	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	PPM1G	NM_177983	exon6	c.A845T	p.D282V	TAGCCATCCTCTT	.	56.0	5.0	40.0	0.0	.	42	.	.	Atlas-SNP
IFT172	26160	hgsc.bcm.edu	hg19	2	27668656	27668656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	IFT172	NM_015662	exon45	c.G4870T	p.D1624Y	GAATGTCTGTATC	.	109.0	31.0	96.0	0.0	.	119	.	.	Atlas-SNP
FAM179A	165186	hgsc.bcm.edu	hg19	2	29237345	29237345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	FAM179A	NM_199280	exon8	c.C962T	p.T321M	CTCCCACGCTGAC	.	62.0	30.0	70.0	0.0	.	106	.	.	Atlas-SNP
SPTBN1	6711	hgsc.bcm.edu	hg19	2	54870184	54870184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SPTBN1	NM_003128	exon19	c.A3923G	p.N1308S	CCAGAAATCTGCA	.	157.0	29.0	118.0	0.0	.	378	.	.	Atlas-SNP
EML6	400954	hgsc.bcm.edu	hg19	2	55191747	55191747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	EML6	NM_001039753	exon37	c.G5371A	p.E1791K	TCTTCTGAACACA	.	112.0	34.0	86.0	0.0	.	85	.	.	Atlas-SNP
UGP2	7360	hgsc.bcm.edu	hg19	2	64118290	64118290	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	UGP2	NM_006759	exon10	c.A1456C	p.I486L	GACAGAATTGATA	.	108.0	33.0	69.0	0.0	.	38	.	.	Atlas-SNP
CEP68	23177	hgsc.bcm.edu	hg19	2	65299207	65299207	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CEP68	NM_015147	exon3	c.A977T	p.D326V	CAGCTGACCCTGT	.	38.0	19.0	28.0	0.0	.	69	.	.	Atlas-SNP
LOXL3	84695	hgsc.bcm.edu	hg19	2	74761507	74761507	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	LOXL3	NM_032603	exon11	c.T1875C	p.N625N	GGTGCCATTTGGG	.	111.0	34.0	68.0	0.0	.	73	.	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	84896476	84896476	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	DNAH6	NM_001370	exon38	c.T6148A	p.W2050R	GATCCCTGGGAAC	.	133.0	34.0	97.0	0.0	.	194	.	.	Atlas-SNP
TMEM127	55654	hgsc.bcm.edu	hg19	2	96930988	96930988	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	TMEM127	NM_001193304	exon2	c.G132A	p.L44L	AGTGCACAGCGCC	.	953.0	275.0	958.0	1.0	.	13	.	.	Atlas-SNP
RANBP2	5903	hgsc.bcm.edu	hg19	2	109383255	109383255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	RANBP2	NM_006267	exon20	c.A6260G	p.H2087R	CTAATCATTGGAT	.	53.0	12.0	34.0	0.0	.	488	.	.	Atlas-SNP
ORC4	5000	hgsc.bcm.edu	hg19	2	148715877	148715877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ORC4	NM_002552	exon6	c.A377G	p.D126G	ACTTTATCTCCAA	.	127.0	48.0	63.0	0.0	.	40	.	.	Atlas-SNP
EPC2	26122	hgsc.bcm.edu	hg19	2	149528862	149528862	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	EPC2	NM_015630	exon10	c.A1626T	p.E542D	TGAAGAATGTACC	.	241.0	52.0	156.0	0.0	.	57	.	.	Atlas-SNP
SCN9A	6335	hgsc.bcm.edu	hg19	2	167136943	167136943	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SCN9A	NM_002977	exon14	c.T2234G	p.L745X	GTGTTTAAAACTA	.	123.0	32.0	73.0	0.0	.	296	.	.	Atlas-SNP
NOSTRIN	115677	hgsc.bcm.edu	hg19	2	169721359	169721359	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	NOSTRIN	NM_001171631	exon21	c.T1571C	p.I524T	TGATTATACACGA	.	77.0	22.0	45.0	0.0	.	68	.	.	Atlas-SNP
TLK1	9874	hgsc.bcm.edu	hg19	2	171974343	171974343	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	TLK1	NM_012290	exon2	c.T164A	p.L55Q	GGATCCAGACTAT	.	43.0	11.0	24.0	0.0	.	134	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179583266	179583266	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	TTN	NM_001267550	exon85	c.T24567C	p.V8189V	CTCGAGAACTATG	.	121.0	34.0	65.0	0.0	.	18412	.	.	Atlas-SNP
NBEAL1	65065	hgsc.bcm.edu	hg19	2	203996708	203996708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	NBEAL1	NM_001114132	exon25	c.A3490G	p.M1164V	GAACAAATGTTGA	.	218.0	64.0	93.0	0.0	.	266	.	.	Atlas-SNP
MAP2	4133	hgsc.bcm.edu	hg19	2	210569340	210569340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	MAP2	NM_001039538	exon9	c.A683G	p.N228S	CAGGGAACAAGGT	.	343.0	32.0	202.0	0.0	.	372	.	.	Atlas-SNP
CHPF	79586	hgsc.bcm.edu	hg19	2	220406657	220406657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CHPF	NM_024536	exon2	c.A569G	p.D190G	AAGTCGTCGCCGT	.	103.0	32.0	102.0	0.0	.	56	.	.	Atlas-SNP
FANCD2	2177	hgsc.bcm.edu	hg19	3	10084812	10084812	+	Silent	SNP	T	T	C	rs370641659		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	FANCD2	NM_001018115	exon12	c.T967C	p.L323L	GTAAAGTTGAAAA	.	87.0	33.0	81.0	0.0	.	253	.	.	Atlas-SNP
EOMES	8320	hgsc.bcm.edu	hg19	3	27763601	27763601	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	EOMES	NM_005442	exon1	c.A185T	p.E62V	ACCGCCTCGCAGG	.	60.0	17.0	89.0	0.0	.	65	.	.	Atlas-SNP
VIPR1	7433	hgsc.bcm.edu	hg19	3	42576555	42576555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	VIPR1	NM_004624	exon11	c.G1099A	p.E367K	AAGCCTGAAGTGA	.	77.0	22.0	74.0	0.0	.	45	.	.	Atlas-SNP
CCDC71	64925	hgsc.bcm.edu	hg19	3	49200857	49200857	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CCDC71	NM_022903	exon2	c.C785G	p.T262S	GACCCAGTGGCTC	.	55.0	9.0	42.0	0.0	.	33	.	.	Atlas-SNP
WDR82	80335	hgsc.bcm.edu	hg19	3	52304771	52304771	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	WDR82	NM_025222	exon2	c.T216A	p.T72T	TGCATGAGTGTAT	.	91.0	24.0	46.0	0.0	.	19	.	.	Atlas-SNP
LRIG1	26018	hgsc.bcm.edu	hg19	3	66431958	66431958	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	LRIG1	NM_015541	exon17	c.A2715G	p.K905K	CGGCTCTTTGTGA	.	68.0	25.0	56.0	0.0	.	138	.	.	Atlas-SNP
PPP4R2	151987	hgsc.bcm.edu	hg19	3	73113262	73113262	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	PPP4R2	NM_174907	exon7	c.G603A	p.E201E	CAAAGAGGCAAAT	.	233.0	61.0	136.0	0.0	.	30	.	.	Atlas-SNP
FILIP1L	11259	hgsc.bcm.edu	hg19	3	99567920	99567920	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	FILIP1L	NM_182909	exon5	c.A2600C	p.K867T	TTGGATTTCATCC	.	107.0	31.0	83.0	0.0	.	154	.	.	Atlas-SNP
TRIM42	287015	hgsc.bcm.edu	hg19	3	140401678	140401678	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	TRIM42	NM_152616	exon2	c.A716T	p.Q239L	TCTGCCAGGTCTG	.	56.0	6.0	56.0	0.0	.	143	.	.	Atlas-SNP
TSC22D2	9819	hgsc.bcm.edu	hg19	3	150127758	150127758	+	Silent	SNP	T	T	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	TSC22D2	NM_014779	exon1	c.T621G	p.T207T	CAGTACTTTTGAC	.	84.0	17.0	60.0	0.0	.	42	.	.	Atlas-SNP
SERP1	27230	hgsc.bcm.edu	hg19	3	150262283	150262283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SERP1	NM_014445	exon3	c.A163G	p.I55V	GGAAAATTGCTGT	.	283.0	72.0	217.0	0.0	.	9	.	.	Atlas-SNP
DHX36	170506	hgsc.bcm.edu	hg19	3	154022720	154022720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	DHX36	NM_020865	exon8	c.A1010G	p.H337R	CTTTCATGGATTT	.	249.0	11.0	151.0	0.0	.	98	.	.	Atlas-SNP
IFT80	57560	hgsc.bcm.edu	hg19	3	160099508	160099508	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	IFT80	NM_020800	exon3	c.A42C	p.Q14H	TAATTCTTGATGT	.	116.0	9.0	75.0	0.0	.	68	.	.	Atlas-SNP
DVL3	1857	hgsc.bcm.edu	hg19	3	183884260	183884260	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	DVL3	NM_004423	exon9	c.G930C	p.M310I	GAACATGAGTAAT	.	164.0	8.0	111.0	0.0	.	68	.	.	Atlas-SNP
VPS8	23355	hgsc.bcm.edu	hg19	3	184642719	184642719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	VPS8	NM_001009921	exon29	c.C2524T	p.L842F	CGGCAGCTTGCAA	.	66.0	10.0	43.0	0.0	.	109	.	.	Atlas-SNP
ADIPOQ	9370	hgsc.bcm.edu	hg19	3	186572334	186572334	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ADIPOQ	NM_001177800	exon4	c.T576A	p.N192K	GGAAAATAATGTG	.	107.0	25.0	80.0	0.0	.	35	.	.	Atlas-SNP
DLG1	1739	hgsc.bcm.edu	hg19	3	197009694	197009694	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	DLG1	NM_001204386	exon4	c.G174A	p.V58V	TAAGGTCACTTCA	.	102.0	24.0	66.0	0.0	.	120	.	.	Atlas-SNP
DLG1	1739	hgsc.bcm.edu	hg19	3	197023325	197023325	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	DLG1	NM_001204386	exon3	c.T43G	p.L15V	CCTCCAAAAGGTG	.	79.0	22.0	62.0	0.0	.	120	.	.	Atlas-SNP
WFS1	7466	hgsc.bcm.edu	hg19	4	6279336	6279336	+	Missense_Mutation	SNP	C	C	T	rs111773340	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	WFS1	NM_001145853	exon2	c.C154T	p.P52S	CCTGGCCCTGGTG	.	152.0	10.0	177.0	0.0	.	71	.	C|0.999;A|0.001	Atlas-SNP
TLR6	10333	hgsc.bcm.edu	hg19	4	38828947	38828947	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	TLR6	NM_006068	exon2	c.C2148A	p.L716L	AAAATAGAGTTCG	.	137.0	6.0	75.0	0.0	.	67	.	.	Atlas-SNP
TXK	7294	hgsc.bcm.edu	hg19	4	48096195	48096195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	TXK	NM_003328	exon8	c.A608G	p.Y203C	ATCTGATAATGTT	.	45.0	11.0	35.0	0.0	.	58	.	.	Atlas-SNP
SCARB2	950	hgsc.bcm.edu	hg19	4	77095407	77095407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SCARB2	NM_005506	exon7	c.A884G	p.Y295C	ACTTTATACCGAA	.	122.0	41.0	68.0	0.0	.	47	.	.	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	hg19	4	85639621	85639621	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	WDFY3	NM_014991	exon48	c.A7708T	p.M2570L	CTGTCATGGTAAA	.	102.0	24.0	64.0	0.0	.	314	.	.	Atlas-SNP
SLC39A8	64116	hgsc.bcm.edu	hg19	4	103236884	103236884	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SLC39A8	NM_022154	exon2	c.T323G	p.L108W	AAGTTCAATTGCT	.	155.0	27.0	104.0	0.0	.	24	.	.	Atlas-SNP
CFI	3426	hgsc.bcm.edu	hg19	4	110687778	110687778	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CFI	NM_000204	exon2	c.A260C	p.Q87P	TTTTGTTGACAGT	.	100.0	24.0	87.0	0.0	.	59	.	.	Atlas-SNP
TBC1D9	23158	hgsc.bcm.edu	hg19	4	141543436	141543436	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	TBC1D9	NM_015130	exon21	c.C3714T	p.A1238A	AATCCTGGCCATC	.	127.0	15.0	138.0	0.0	.	198	.	.	Atlas-SNP
PALLD	23022	hgsc.bcm.edu	hg19	4	169835138	169835138	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	PALLD	NM_001166108	exon16	c.C2683G	p.P895A	CGAAGTCCCCGGT	.	109.0	8.0	64.0	0.0	.	179	.	.	Atlas-SNP
GLRA3	8001	hgsc.bcm.edu	hg19	4	175580328	175580328	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	GLRA3	NM_001042543	exon8	c.T948C	p.I316I	AATATCAATAGCT	.	80.0	23.0	52.0	0.0	.	76	.	.	Atlas-SNP
TLR3	7098	hgsc.bcm.edu	hg19	4	186997921	186997921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	TLR3	NM_003265	exon2	c.C148A	p.P50T	GATCTACCCACAA	.	87.0	30.0	81.0	0.0	.	83	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13718998	13718998	+	Silent	SNP	T	T	C	rs141935657		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	DNAH5	NM_001369	exon72	c.A12492G	p.T4164T	ACTATATGTTCTT	.	85.0	30.0	65.0	0.0	.	868	.	T|1.000;C|0.000	Atlas-SNP
NPR3	4883	hgsc.bcm.edu	hg19	5	32739134	32739134	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	NPR3	NM_000908	exon3	c.T1057A	p.Y353N	GAGGATTACGTAA	.	58.0	16.0	43.0	0.0	.	65	.	.	Atlas-SNP
RICTOR	253260	hgsc.bcm.edu	hg19	5	38945618	38945618	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	RICTOR	NM_152756	exon34	c.A4608T	p.Q1536H	ACTCAGTTGGTTG	.	89.0	27.0	64.0	0.0	.	182	.	.	Atlas-SNP
MAST4	375449	hgsc.bcm.edu	hg19	5	66396331	66396331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	MAST4	NM_001164664	exon8	c.C981A	p.F327L	ACACTTCTTATCA	.	83.0	5.0	67.0	0.0	.	218	.	.	Atlas-SNP
HMGCR	3156	hgsc.bcm.edu	hg19	5	74650335	74650335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	HMGCR	NM_001130996	exon12	c.C1376T	p.A459V	AAGGTGCAAAATT	.	77.0	10.0	46.0	0.0	.	53	.	.	Atlas-SNP
AP3B1	8546	hgsc.bcm.edu	hg19	5	77423969	77423969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	AP3B1	NM_003664	exon17	c.A1853G	p.Q618R	CCAAGCTGGAAAT	.	76.0	29.0	33.0	0.0	.	94	.	.	Atlas-SNP
ERAP1	51752	hgsc.bcm.edu	hg19	5	96117490	96117490	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ERAP1	NM_001198541	exon16	c.T2354C	p.L785P	CTATAAAGAAAAT	.	65.0	14.0	47.0	0.0	.	59	.	.	Atlas-SNP
PCDHA3	56145	hgsc.bcm.edu	hg19	5	140181280	140181280	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	PCDHA3	NM_031497	exon1	c.G498A	p.S166S	AAATTCGTTGTTG	.	96.0	34.0	68.0	0.0	.	396	.	.	Atlas-SNP
MRPL22	29093	hgsc.bcm.edu	hg19	5	154330405	154330405	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	MRPL22	NM_014180	exon3	c.C102G	p.H34Q	TATCCACACAAGT	.	67.0	5.0	44.0	0.0	.	18	.	.	Atlas-SNP
GABRA6	2559	hgsc.bcm.edu	hg19	5	161128536	161128536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	GABRA6	NM_000811	exon9	c.G1119T	p.R373S	GAAAAGGATCACT	.	81.0	25.0	48.0	0.0	.	139	.	.	Atlas-SNP
CDHR2	54825	hgsc.bcm.edu	hg19	5	176018233	176018233	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CDHR2	NM_017675	exon29	c.A3562G	p.M1188V	CAAGCTATGAAGG	.	91.0	22.0	97.0	0.0	.	152	.	.	Atlas-SNP
SLC34A1	6569	hgsc.bcm.edu	hg19	5	176813072	176813072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SLC34A1	NM_003052	exon3	c.G194A	p.G65E	CCTGTGGGGAGGT	.	100.0	8.0	107.0	0.0	.	73	.	.	Atlas-SNP
NUP153	9972	hgsc.bcm.edu	hg19	6	17675798	17675798	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	NUP153	NM_005124	exon3	c.A538C	p.N180H	AGATGTTATCATC	.	132.0	24.0	95.0	0.0	.	116	.	.	Atlas-SNP
ETV7	51513	hgsc.bcm.edu	hg19	6	36334437	36334437	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ETV7	NM_016135	exon8	c.A1011T	p.P337P	GATTTCTGGCCTC	.	76.0	20.0	61.0	0.0	.	31	.	.	Atlas-SNP
MEP1A	4224	hgsc.bcm.edu	hg19	6	46794122	46794122	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	MEP1A	NM_005588	exon9	c.T810C	p.T270T	CTGTACTTTTGAG	.	92.0	33.0	50.0	0.0	.	93	.	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	hg19	6	51889983	51889983	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	PKHD1	NM_170724	exon32	c.A4625C	p.D1542A	GCCAAGTCTCTTG	.	87.0	22.0	75.0	0.0	.	927	.	.	Atlas-SNP
GSTA4	2941	hgsc.bcm.edu	hg19	6	52850272	52850272	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	GSTA4	NM_001512	exon4	c.C249A	p.G83G	GTTCTTGCCAAAG	.	118.0	28.0	97.0	0.0	.	20	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56401645	56401645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	DST	NM_015548	exon43	c.A8833G	p.T2945A	TGCTAGTGCTTTT	.	100.0	27.0	54.0	0.0	.	1427	.	.	Atlas-SNP
NT5E	4907	hgsc.bcm.edu	hg19	6	86194984	86194984	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	NT5E,rectum,carcinoma,0,1	NT5E	NM_001204813	exon4	c.G783T	p.G261G	TGCTGGGAAGTAC	.	67.0	19.0	56.0	0.0	.	56	.	.	Atlas-SNP
AKIRIN2	55122	hgsc.bcm.edu	hg19	6	88387595	88387595	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	AKIRIN2	NM_018064	exon3	c.A470C	p.K157T	CGTTCTTTCAACA	.	86.0	29.0	52.0	0.0	.	13	.	.	Atlas-SNP
CCNC	892	hgsc.bcm.edu	hg19	6	100016396	100016396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CCNC	NM_005190	exon1	c.G8A	p.G3E	AAGTTCCCTGCCA	.	72.0	7.0	77.0	0.0	.	23	.	.	Atlas-SNP
AKD1	221264	hgsc.bcm.edu	hg19	6	109863371	109863371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	AKD1	NM_001145128	exon27	c.C3229A	p.P1077T	CTTCTGGAAGCTA	.	98.0	29.0	50.0	0.0	.	223	.	.	Atlas-SNP
TAAR2	9287	hgsc.bcm.edu	hg19	6	132938564	132938564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	TAAR2	NM_001033080	exon2	c.G781T	p.A261S	TTTTGGCAGCTTT	.	152.0	46.0	92.0	0.0	.	45	.	.	Atlas-SNP
HBS1L	10767	hgsc.bcm.edu	hg19	6	135357985	135357985	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	HBS1L	NM_001145207	exon5	c.A1610C	p.N537T	TTGTTGTTTTTCT	.	99.0	26.0	53.0	0.0	.	75	.	.	Atlas-SNP
KIAA1244	57221	hgsc.bcm.edu	hg19	6	138584345	138584345	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	KIAA1244	NM_020340	exon12	c.T1725C	p.T575T	CATAACTAACTTC	.	75.0	30.0	84.0	0.0	.	236	.	.	Atlas-SNP
THBS2	7058	hgsc.bcm.edu	hg19	6	169650830	169650830	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	THBS2	NM_003247	exon3	c.A50C	p.Q17P	TCACCTTGCGTGC	.	125.0	38.0	77.0	0.0	.	230	.	.	Atlas-SNP
HDAC9	9734	hgsc.bcm.edu	hg19	7	18687484	18687484	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	HDAC9	NM_178425	exon9	c.A1112G	p.Y371C	GGCAGTATGGAGG	.	106.0	37.0	73.0	0.0	.	560	.	.	Atlas-SNP
STK31	56164	hgsc.bcm.edu	hg19	7	23776654	23776654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	STK31	NM_031414	exon8	c.A974G	p.K325R	GTTATAAGGCGTT	.	29.0	10.0	29.0	0.0	.	175	.	.	Atlas-SNP
ZNF679	168417	hgsc.bcm.edu	hg19	7	63720639	63720639	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ZNF679	NM_153363	exon3	c.T80A	p.L27Q	TCTCTCTGGAGGA	.	168.0	50.0	109.0	0.0	.	80	.	.	Atlas-SNP
ARPC1B	10095	hgsc.bcm.edu	hg19	7	98985732	98985732	+	Silent	SNP	G	G	A	rs373569413		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ARPC1B	NM_005720	exon4	c.G240A	p.T80T	GTGGACGCTGAAG	.	146.0	44.0	161.0	0.0	.	41	.	.	Atlas-SNP
AGFG2	3268	hgsc.bcm.edu	hg19	7	100148104	100148104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	AGFG2	NM_006076	exon3	c.T401C	p.F134S	AGGAGTTTCTCCA	.	70.0	19.0	57.0	0.0	.	44	.	.	Atlas-SNP
CALU	813	hgsc.bcm.edu	hg19	7	128394594	128394594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CALU	NM_001199672	exon4	c.A257G	p.D86G	TTGTAGATAAAAT	.	190.0	56.0	133.0	0.0	.	42	.	.	Atlas-SNP
TTI2	80185	hgsc.bcm.edu	hg19	8	33361357	33361357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	.	NM_001265581	exon5	c.G1024T	p.V342F	GCAGGACCTCATC	.	45.0	17.0	58.0	0.0	.	.	.	.	Atlas-SNP
UNC5D	137970	hgsc.bcm.edu	hg19	8	35579903	35579903	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	UNC5D	NM_080872	exon9	c.A1293T	p.T431T	CAAAACAGTCCGT	.	41.0	7.0	68.0	0.0	.	393	.	.	Atlas-SNP
INTS8	55656	hgsc.bcm.edu	hg19	8	95884163	95884163	+	Silent	SNP	T	T	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	INTS8	NM_017864	exon21	c.T2466G	p.V822V	GCTAGTTCGATAT	.	75.0	25.0	42.0	0.0	.	92	.	.	Atlas-SNP
ZNF706	51123	hgsc.bcm.edu	hg19	8	102213861	102213861	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ZNF706	NM_001042510	exon3	c.T109G	p.L37V	ATATTAAGGCAGC	.	60.0	10.0	59.0	0.0	.	12	.	.	Atlas-SNP
ATP6V1C1	528	hgsc.bcm.edu	hg19	8	104065039	104065039	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ATP6V1C1	NM_001695	exon6	c.A462G	p.E154E	TTTGGAACGAAAG	.	65.0	17.0	39.0	0.0	.	33	.	.	Atlas-SNP
KLHL38	340359	hgsc.bcm.edu	hg19	8	124664885	124664885	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	KLHL38	NM_001081675	exon1	c.G282A	p.T94T	CTCCCCCGTATAC	.	108.0	29.0	82.0	0.0	.	81	.	.	Atlas-SNP
HHLA1	10086	hgsc.bcm.edu	hg19	8	133099901	133099901	+	Silent	SNP	C	C	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	HHLA1	NM_001145095	exon9	c.G675C	p.L225L	CTCACCCAGAACA	.	146.0	33.0	73.0	0.0	.	35	.	.	Atlas-SNP
ZNF7	7553	hgsc.bcm.edu	hg19	8	146068016	146068016	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ZNF7	NM_003416	exon5	c.G1524C	p.Q508H	CAGTCAGAGTTCC	.	127.0	63.0	49.0	0.0	.	62	.	.	Atlas-SNP
JAK2	3717	hgsc.bcm.edu	hg19	9	5081813	5081813	+	Silent	SNP	T	T	G	rs112584696	alternate_allele	TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	JAK2	NM_004972	exon19	c.T2523G	p.P841P	GGATCCTACACAG	.	132.0	7.0	76.0	0.0	.	35466	.	T|0.500;C|0.500	Atlas-SNP
SPATA31C2	645961	hgsc.bcm.edu	hg19	9	90746809	90746809	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	.	NM_001166137	exon4	c.G1143A	p.A381A	CTGCGACGCAGGG	.	75.0	20.0	67.0	0.0	.	.	.	.	Atlas-SNP
FIBCD1	84929	hgsc.bcm.edu	hg19	9	133799206	133799206	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	FIBCD1	NM_001145106	exon5	c.C774T	p.Y258Y	GACAGAGTAGACG	.	127.0	47.0	116.0	0.0	.	34	.	.	Atlas-SNP
COMMD3-BMI1	0	hgsc.bcm.edu	hg19	10	22605353	22605353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	.	NM_001204062	exon1	c.C7T	p.L3F	ATGGAGCTCTCGG	.	76.0	28.0	94.0	0.0	.	.	.	.	Atlas-SNP
AGAP6	414189	hgsc.bcm.edu	hg19	10	51768608	51768608	+	Silent	SNP	G	G	C	rs71245228		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	AGAP6,NS,carcinoma,0,2	AGAP6	NM_001077665	exon8	c.G723C	p.T241T	ACCCACGCCCGTT	.	45.0	3.0	48.0	1.0	.	53	.	G|0.500;C|0.500	Atlas-SNP
PHYHIPL	84457	hgsc.bcm.edu	hg19	10	60996312	60996312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	PHYHIPL	NM_032439	exon3	c.A373G	p.S125G	TTTTTAAGCCCAA	.	84.0	30.0	61.0	0.0	.	44	.	.	Atlas-SNP
LGI1	9211	hgsc.bcm.edu	hg19	10	95557391	95557391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	LGI1	NM_005097	exon8	c.A1505G	p.Y502C	AAGTGTATAACTG	.	1673.0	310.0	1022.0	0.0	.	69	.	.	Atlas-SNP
BLOC1S2	282991	hgsc.bcm.edu	hg19	10	102040753	102040753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	BLOC1S2	NM_173809	exon3	c.A230G	p.Y77C	TCAAGATACTTCA	.	89.0	5.0	46.0	0.0	.	10	.	.	Atlas-SNP
WDR11	55717	hgsc.bcm.edu	hg19	10	122626230	122626230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	WDR11	NM_018117	exon8	c.A1144G	p.I382V	GTCATGATATGGG	.	128.0	37.0	92.0	0.0	.	95	.	.	Atlas-SNP
IPO7	10527	hgsc.bcm.edu	hg19	11	9435885	9435885	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	IPO7	NM_006391	exon5	c.T563G	p.L188R	TCCAGCTTCTTTC	.	78.0	24.0	49.0	0.0	.	72	.	.	Atlas-SNP
EIF4G2	1982	hgsc.bcm.edu	hg19	11	10823243	10823243	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	EIF4G2,NS,carcinoma,0,1	EIF4G2	NM_001172705	exon14	c.C1378A	p.R460R	AAAACCGAGGTGG	.	79.0	15.0	66.0	0.0	.	89	.	.	Atlas-SNP
EIF4G2	1982	hgsc.bcm.edu	hg19	11	10826502	10826502	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	EIF4G2	NM_001172705	exon5	c.G309A	p.V103V	TACACCCACATTG	.	125.0	15.0	78.0	0.0	.	89	.	.	Atlas-SNP
HPS5	11234	hgsc.bcm.edu	hg19	11	18333536	18333536	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	HPS5	NM_181507	exon3	c.T144A	p.A48A	GCCCAAAGCCAAC	.	80.0	22.0	58.0	0.0	.	70	.	.	Atlas-SNP
PRR5L	79899	hgsc.bcm.edu	hg19	11	36472812	36472812	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	PRR5L	NM_024841	exon9	c.G639A	p.L213L	GGAGCTGGTGAAG	.	116.0	29.0	78.0	0.0	.	35	.	.	Atlas-SNP
SYT13	57586	hgsc.bcm.edu	hg19	11	45307590	45307590	+	Missense_Mutation	SNP	C	C	A	rs139035860	bycluster;byfrequency;alternate_allele	TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SYT13	NM_020826	exon1	c.G169T	p.G57W	CAGACCCGAGCAA	.	66.0	19.0	66.0	0.0	.	45	.	C|0.999;G|0.001	Atlas-SNP
OR4D9	390199	hgsc.bcm.edu	hg19	11	59282778	59282778	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	OR4D9	NM_001004711	exon1	c.C393T	p.H131H	CCTGCACTATATG	.	59.0	16.0	46.0	0.0	.	47	.	.	Atlas-SNP
CHRM1	1128	hgsc.bcm.edu	hg19	11	62678251	62678251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CHRM1	NM_000738	exon2	c.G322A	p.A108T	TGCTGGCCACATA	.	135.0	43.0	82.0	0.0	.	29	.	.	Atlas-SNP
CCS	9973	hgsc.bcm.edu	hg19	11	66367052	66367052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CCS	NM_005125	exon4	c.G373T	p.G125W	GAGCCTGGGCTGC	.	196.0	54.0	207.0	0.0	.	22	.	.	Atlas-SNP
MTNR1B	4544	hgsc.bcm.edu	hg19	11	92714649	92714649	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	MTNR1B	NM_005959	exon2	c.T260A	p.L87Q	CTGACCTGGTGGT	.	64.0	22.0	36.0	0.0	.	75	.	.	Atlas-SNP
CCDC67	159989	hgsc.bcm.edu	hg19	11	93104432	93104432	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CCDC67	NM_181645	exon7	c.C775T	p.Q259X	ATGTACCAAAGAC	.	366.0	113.0	229.0	0.0	.	57	.	.	Atlas-SNP
MAML2	84441	hgsc.bcm.edu	hg19	11	95724767	95724767	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	MAML2	NM_032427	exon3	c.A2260G	p.M754V	TTCCCATCAATTG	.	97.0	6.0	63.0	0.0	.	94	.	.	Atlas-SNP
C11orf70	85016	hgsc.bcm.edu	hg19	11	101918604	101918604	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	C11orf70	NM_032930	exon2	c.T169A	p.Y57N	CAGTCCTATCGGA	.	83.0	19.0	77.0	0.0	.	33	.	.	Atlas-SNP
GRIA4	2893	hgsc.bcm.edu	hg19	11	105795386	105795386	+	Missense_Mutation	SNP	G	G	T	rs200205997	by1000genomes;alternate_allele	TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	GRIA4	NM_001077243	exon12	c.G1738T	p.D580Y	CCAGAGGACGGAA	.	185.0	12.0	111.0	0.0	.	380	.	G|1.000;A|0.000	Atlas-SNP
NXPE2	120406	hgsc.bcm.edu	hg19	11	114550401	114550401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	.	NM_182495	exon2	c.G49T	p.A17S	CCAAATGCCATAG	.	62.0	21.0	28.0	0.0	.	.	.	.	Atlas-SNP
OR8D2	283160	hgsc.bcm.edu	hg19	11	124190043	124190043	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	OR8D2	NM_001002918	exon1	c.G51C	p.L17F	TTGTGTCAAGCCT	.	69.0	18.0	54.0	0.0	.	65	.	.	Atlas-SNP
VSIG2	23584	hgsc.bcm.edu	hg19	11	124618302	124618302	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	VSIG2	NM_014312	exon6	c.G835C	p.G279R	TACCCCCATATGT	.	69.0	31.0	64.0	0.0	.	38	.	.	Atlas-SNP
SLC6A13	6540	hgsc.bcm.edu	hg19	12	330614	330614	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SLC6A13	NM_016615	exon14	c.T1614C	p.A538A	GGACAGAGCCAGG	.	68.0	8.0	64.0	0.0	.	62	.	.	Atlas-SNP
KCNA1	3736	hgsc.bcm.edu	hg19	12	5020868	5020868	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	KCNA1	NM_000217	exon2	c.G324T	p.V108V	CAACGTGCCCCTG	.	65.0	14.0	97.0	0.0	.	112	.	.	Atlas-SNP
A2M	2	hgsc.bcm.edu	hg19	12	9262919	9262919	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	A2M	NM_000014	exon5	c.A495G	p.V165V	AATGTATACTAGT	.	37.0	14.0	27.0	0.0	.	180	.	.	Atlas-SNP
CLEC12A	160364	hgsc.bcm.edu	hg19	12	10131563	10131563	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CLEC12A	NM_001207010	exon3	c.122-2A>T	.	TTCCACAGCACCT	.	73.0	15.0	50.0	0.0	.	65	.	.	Atlas-SNP
LRP6	4040	hgsc.bcm.edu	hg19	12	12332891	12332891	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	LRP6	NM_002336	exon7	c.A1398T	p.G466G	AATTTCTCCCCAG	.	115.0	23.0	59.0	0.0	.	170	.	.	Atlas-SNP
PIK3C2G	5288	hgsc.bcm.edu	hg19	12	18576952	18576952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	PIK3C2G	NM_004570	exon17	c.A2360G	p.Q787R	GCATCCAGGTTGC	.	100.0	26.0	64.0	0.0	.	315	.	.	Atlas-SNP
ITGA5	3678	hgsc.bcm.edu	hg19	12	54798981	54798981	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ITGA5	NM_002205	exon12	c.C1194A	p.P398P	CCCCAGGGGGGTC	.	149.0	29.0	146.0	0.0	.	99	.	.	Atlas-SNP
ITGA5	3678	hgsc.bcm.edu	hg19	12	54799001	54799001	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ITGA5	NM_002205	exon12	c.T1174G	p.F392V	TGCCAAATCGGCC	.	153.0	26.0	142.0	0.0	.	99	.	.	Atlas-SNP
DGKA	1606	hgsc.bcm.edu	hg19	12	56346937	56346937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	DGKA	NM_201554	exon22	c.A2056G	p.T686A	GAGATCACCTTCC	.	72.0	24.0	57.0	0.0	.	70	.	.	Atlas-SNP
SMARCC2	6601	hgsc.bcm.edu	hg19	12	56575848	56575848	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SMARCC2	NM_139067	exon8	c.C648A	p.I216I	CGCTGGGATCCAC	.	142.0	42.0	116.0	0.0	.	212	.	.	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	70928714	70928714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	PTPRB	NM_001109754	exon30	c.C6103A	p.P2035T	CCGCTGGCCAGTA	.	97.0	25.0	88.0	0.0	.	676	.	.	Atlas-SNP
SLC6A15	55117	hgsc.bcm.edu	hg19	12	85279833	85279833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SLC6A15	NM_018057	exon3	c.C304A	p.P102T	AATATGGTAAAAG	.	174.0	58.0	102.0	0.0	.	159	.	.	Atlas-SNP
HIP1R	9026	hgsc.bcm.edu	hg19	12	123340546	123340546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	HIP1R	NM_003959	exon14	c.A1148G	p.Q383R	TCGCGCAGCTGAA	.	133.0	21.0	142.0	0.0	.	68	.	.	Atlas-SNP
TPTE2	93492	hgsc.bcm.edu	hg19	13	20056675	20056675	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	TPTE2	NM_199254	exon5	c.A132G	p.R44R	GGAAAGTCGTTCT	.	495.0	138.0	279.0	0.0	.	225	.	.	Atlas-SNP
TPTE2	93492	hgsc.bcm.edu	hg19	13	20067639	20067639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	TPTE2	NM_199254	exon3	c.C14T	p.P5L	GTCTGTGGACTAG	.	35.0	11.0	26.0	0.0	.	225	.	.	Atlas-SNP
SACS	26278	hgsc.bcm.edu	hg19	13	23909684	23909684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SACS	NM_014363	exon10	c.G8331T	p.R2777S	TTGTTTCCTTTTC	.	50.0	13.0	32.0	0.0	.	871	.	.	Atlas-SNP
ENOX1	55068	hgsc.bcm.edu	hg19	13	43918692	43918692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ENOX1	NM_017993	exon9	c.A1018G	p.T340A	TCCCAGTTAAGGC	.	137.0	43.0	126.0	0.0	.	158	.	.	Atlas-SNP
COG3	83548	hgsc.bcm.edu	hg19	13	46067517	46067517	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	COG3	NM_031431	exon12	c.A1223T	p.D408V	TGTATGATGTCTT	.	127.0	44.0	82.0	0.0	.	52	.	.	Atlas-SNP
COG3	83548	hgsc.bcm.edu	hg19	13	46104830	46104830	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	COG3	NM_031431	exon22	c.A2372G	p.Q791R	TTCAGCAAGTCTT	.	73.0	5.0	53.0	0.0	.	52	.	.	Atlas-SNP
DIAPH3	81624	hgsc.bcm.edu	hg19	13	60348376	60348376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	DIAPH3	NM_001042517	exon27	c.G3266T	p.R1089L	CTCTGCCGAACAT	.	301.0	18.0	195.0	0.0	.	139	.	.	Atlas-SNP
RNF31	55072	hgsc.bcm.edu	hg19	14	24617276	24617276	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	RNF31	NM_017999	exon2	c.G284A	p.W95X	GGTACTGGCGTGG	.	47.0	15.0	44.0	0.0	.	95	.	.	Atlas-SNP
PLEKHH1	57475	hgsc.bcm.edu	hg19	14	68046545	68046545	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	PLEKHH1	NM_020715	exon22	c.C3135A	p.D1045E	CACGGACGATCCC	.	55.0	19.0	49.0	0.0	.	118	.	.	Atlas-SNP
SERPINA10	51156	hgsc.bcm.edu	hg19	14	94752462	94752462	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SERPINA10	NM_001100607	exon4	c.A1126C	p.N376H	GGAGATTTCTTCC	.	83.0	24.0	60.0	0.0	.	83	.	.	Atlas-SNP
INF2	64423	hgsc.bcm.edu	hg19	14	105180664	105180664	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	INF2	NM_022489	exon21	c.C3165A	p.P1055P	GACCCCCGGCCCT	.	59.0	26.0	46.0	0.0	.	148	.	.	Atlas-SNP
NPAP1	23742	hgsc.bcm.edu	hg19	15	24923532	24923532	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	.	NM_018958	exon1	c.T2518A	p.F840I	TCTACCTTTGTCT	.	54.0	17.0	38.0	0.0	.	.	.	.	Atlas-SNP
SPINT1	6692	hgsc.bcm.edu	hg19	15	41136861	41136861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SPINT1	NM_181642	exon2	c.C109T	p.P37S	GCCGGGCCACCGC	.	114.0	39.0	146.0	0.0	.	28	.	.	Atlas-SNP
PDIA3	2923	hgsc.bcm.edu	hg19	15	44060746	44060746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	PDIA3	NM_005313	exon9	c.G1088T	p.R363I	TGAAGAGATACCT	.	83.0	31.0	52.0	0.0	.	40	.	.	Atlas-SNP
SEMA6D	80031	hgsc.bcm.edu	hg19	15	48052603	48052603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SEMA6D	NM_153617	exon3	c.T212C	p.I71T	TTTATATTGCTGG	.	95.0	4.0	54.0	0.0	.	322	.	.	Atlas-SNP
RORA	6095	hgsc.bcm.edu	hg19	15	60803529	60803529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	RORA	NM_134260	exon6	c.T815C	p.I272T	GGTTTGATTCCAT	.	102.0	32.0	82.0	0.0	.	114	.	.	Atlas-SNP
DENND4A	10260	hgsc.bcm.edu	hg19	15	65962168	65962168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	DENND4A	NM_001144823	exon27	c.C4733T	p.S1578F	AGACCAGAGGCTG	.	104.0	30.0	67.0	0.0	.	217	.	.	Atlas-SNP
CCDC33	80125	hgsc.bcm.edu	hg19	15	74559069	74559069	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CCDC33	NM_025055	exon4	c.T370A	p.Y124N	TTGTCCTACAAAA	.	95.0	26.0	64.0	0.0	.	160	.	.	Atlas-SNP
TMC3	342125	hgsc.bcm.edu	hg19	15	81635637	81635637	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	TMC3	NM_001080532	exon15	c.A1697T	p.Y566F	TGGTTGTAGACTA	.	112.0	37.0	51.0	0.0	.	112	.	.	Atlas-SNP
CCNF	899	hgsc.bcm.edu	hg19	16	2483037	2483037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CCNF	NM_001761	exon3	c.C247A	p.P83T	CTGTGGCCGTCTC	.	49.0	11.0	50.0	0.0	.	110	.	.	Atlas-SNP
GDE1	51573	hgsc.bcm.edu	hg19	16	19514862	19514862	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	GDE1	NM_016641	exon6	c.A926C	p.Y309S	TCGTAGTAACTCT	.	94.0	13.0	55.0	0.0	.	31	.	.	Atlas-SNP
N4BP1	9683	hgsc.bcm.edu	hg19	16	48596122	48596122	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	N4BP1	NM_153029	exon2	c.A432C	p.K144N	GTTCTCTTTATTT	.	81.0	15.0	59.0	0.0	.	121	.	.	Atlas-SNP
HEATR3	55027	hgsc.bcm.edu	hg19	16	50100277	50100277	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	HEATR3	NM_182922	exon2	c.139-1G>T	.	TCCGCAGCTCCAG	.	45.0	16.0	38.0	0.0	.	59	.	.	Atlas-SNP
CHD9	80205	hgsc.bcm.edu	hg19	16	53340154	53340154	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CHD9	NM_025134	exon32	c.A6625T	p.T2209S	GAAAGTACTACTC	.	188.0	53.0	113.0	0.0	.	203	.	.	Atlas-SNP
RPGRIP1L	23322	hgsc.bcm.edu	hg19	16	53639514	53639514	+	Silent	SNP	G	G	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	RPGRIP1L	NM_015272	exon26	c.C3714G	p.T1238T	GACCACGGTGAAG	.	36.0	9.0	28.0	0.0	.	118	.	.	Atlas-SNP
PSMB10	5699	hgsc.bcm.edu	hg19	16	67969964	67969964	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	PSMB10	NM_002801	exon4	c.A285T	p.T95T	CATCCGTGTGGTC	.	43.0	16.0	64.0	0.0	.	19	.	.	Atlas-SNP
SF3B3	23450	hgsc.bcm.edu	hg19	16	70597888	70597888	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SF3B3	NM_012426	exon18	c.A2398T	p.I800F	ATTATCATTGAAA	.	103.0	14.0	84.0	0.0	.	99	.	.	Atlas-SNP
ZNRF1	84937	hgsc.bcm.edu	hg19	16	75033939	75033939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ZNRF1	NM_032268	exon1	c.C370A	p.L124M	GCCTCGCTGGCGG	.	61.0	24.0	72.0	0.0	.	6	.	.	Atlas-SNP
KIAA0513	9764	hgsc.bcm.edu	hg19	16	85112566	85112566	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	KIAA0513	NM_014732	exon8	c.G859T	p.E287X	AAGGGGGAGAAGA	.	58.0	24.0	62.0	0.0	.	43	.	.	Atlas-SNP
ZFPM1	161882	hgsc.bcm.edu	hg19	16	88555560	88555560	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ZFPM1	NM_153813	exon3	c.A267G	p.P89P	CGGGCCAGGTAAC	.	52.0	14.0	52.0	0.0	.	32	.	.	Atlas-SNP
MVD	4597	hgsc.bcm.edu	hg19	16	88723903	88723903	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	MVD	NM_002461	exon4	c.T344C	p.V115A	TTGTTCACCGATG	.	173.0	8.0	170.0	0.0	.	27	.	.	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	hg19	16	89349878	89349878	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ANKRD11	NM_001256183	exon9	c.A3072G	p.K1024K	TTCTGGTTTTGTC	.	55.0	15.0	33.0	0.0	.	195	.	.	Atlas-SNP
ASGR1	432	hgsc.bcm.edu	hg19	17	7077382	7077382	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ASGR1	NM_001671	exon8	c.T599G	p.F200C	TGGACAAATTTCT	.	86.0	30.0	80.0	0.0	.	20	.	.	Atlas-SNP
SLC2A4	6517	hgsc.bcm.edu	hg19	17	7187920	7187920	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	SLC2A4,caecum,carcinoma,0,1	SLC2A4	NM_001042	exon7	c.C844G	p.R282G	GGCAGCCGTACCC	.	86.0	23.0	78.0	0.0	.	44	.	.	Atlas-SNP
MYH10	4628	hgsc.bcm.edu	hg19	17	8416885	8416885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	MYH10	NM_001256012	exon23	c.C2716A	p.L906M	CCTCCAGCTCTCC	.	44.0	5.0	21.0	0.0	.	148	.	.	Atlas-SNP
MYH3	4621	hgsc.bcm.edu	hg19	17	10543714	10543714	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	MYH3	NM_002470	exon21	c.C2362A	p.R788R	GTGTCCGGGTGAT	.	52.0	19.0	43.0	0.0	.	227	.	.	Atlas-SNP
NT5M	56953	hgsc.bcm.edu	hg19	17	17206959	17206959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	NT5M	NM_020201	exon1	c.G95T	p.G32V	TGGCGGGAGGCCG	.	60.0	21.0	56.0	0.0	.	17	.	.	Atlas-SNP
MAP2K3	5606	hgsc.bcm.edu	hg19	17	21203863	21203863	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	MAP2K3	NM_145109	exon4	c.G172T	p.E58X	AACTTTGAGGTGG	.	89.0	19.0	76.0	0.0	.	135	.	.	Atlas-SNP
TADA2A	6871	hgsc.bcm.edu	hg19	17	35804827	35804827	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	TADA2A	NM_001488	exon8	c.G561A	p.L187L	GGACTTGAGAGAC	.	105.0	32.0	87.0	0.0	.	91	.	.	Atlas-SNP
HEXIM1	10614	hgsc.bcm.edu	hg19	17	43226702	43226702	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	HEXIM1	NM_006460	exon1	c.T145A	p.S49T	TGGCAATCGAGAG	.	193.0	54.0	197.0	0.0	.	25	.	.	Atlas-SNP
MED13	9969	hgsc.bcm.edu	hg19	17	60112898	60112898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	MED13	NM_005121	exon4	c.A542G	p.N181S	TGTTGGTTAATTT	.	84.0	6.0	41.0	0.0	.	181	.	.	Atlas-SNP
TACO1	51204	hgsc.bcm.edu	hg19	17	61678596	61678596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	TACO1	NM_016360	exon1	c.T154C	p.F52L	CTGCACTTTACCG	.	81.0	17.0	81.0	0.0	.	13	.	.	Atlas-SNP
MRPS7	51081	hgsc.bcm.edu	hg19	17	73258604	73258604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	MRPS7	NM_015971	exon2	c.A110G	p.Y37C	GCCGCTATAGTCC	.	80.0	23.0	58.0	0.0	.	19	.	.	Atlas-SNP
TRIM65	201292	hgsc.bcm.edu	hg19	17	73892831	73892831	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	TRIM65	NM_001256124	exon1	c.A188C	p.N63T	GCCACGTTGCGGC	.	57.0	21.0	36.0	0.0	.	23	.	.	Atlas-SNP
SPIRE1	56907	hgsc.bcm.edu	hg19	18	12535487	12535487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SPIRE1	NM_020148	exon4	c.G717T	p.K239N	CGCACTCTTAATT	.	59.0	13.0	27.0	0.0	.	120	.	.	Atlas-SNP
GREB1L	80000	hgsc.bcm.edu	hg19	18	19098141	19098141	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	GREB1L	NM_001142966	exon31	c.T5418C	p.H1806H	CATCCATAACTTC	.	101.0	6.0	89.0	0.0	.	69	.	.	Atlas-SNP
MIB1	57534	hgsc.bcm.edu	hg19	18	19437092	19437092	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	MIB1	NM_020774	exon19	c.C2667T	p.N889N	TCCAGACTGTGCT	.	65.0	22.0	55.0	0.0	.	87	.	.	Atlas-SNP
MALT1	10892	hgsc.bcm.edu	hg19	18	56348515	56348515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	MALT1	NM_173844	exon2	c.A323G	p.D108G	TGAGTGATTTCCT	.	100.0	26.0	79.0	0.0	.	55	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9049646	9049646	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	MUC16	NM_024690	exon5	c.A31985T	p.D10662V	CTAGTATCTGTCC	.	107.0	36.0	79.0	0.0	.	4315	.	.	Atlas-SNP
KEAP1	9817	hgsc.bcm.edu	hg19	19	10610240	10610240	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	KEAP1	NM_012289	exon2	c.A470G	p.N157S	GCACCGTTCATGA	.	82.0	12.0	99.0	0.0	.	182	.	.	Atlas-SNP
GADD45GIP1	90480	hgsc.bcm.edu	hg19	19	13065097	13065097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	GADD45GIP1	NM_052850	exon2	c.G594T	p.K198N	CTCCTTCTTCCGT	.	104.0	5.0	96.0	0.0	.	11	.	.	Atlas-SNP
CILP2	148113	hgsc.bcm.edu	hg19	19	19655014	19655014	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CILP2	NM_153221	exon8	c.A1660T	p.M554L	AAGGCCATGCGGA	.	50.0	15.0	63.0	0.0	.	84	.	.	Atlas-SNP
LSR	51599	hgsc.bcm.edu	hg19	19	35758146	35758146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	LSR	NM_205834	exon9	c.C1423A	p.P475T	CAGGAGCCCGCCA	.	84.0	20.0	78.0	0.0	.	60	.	.	Atlas-SNP
COX6B1	1340	hgsc.bcm.edu	hg19	19	36142180	36142180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	COX6B1	NM_001863	exon2	c.A35G	p.Y12C	AGAACTACAAGAC	.	93.0	29.0	62.0	0.0	.	20	.	.	Atlas-SNP
ZNF573	126231	hgsc.bcm.edu	hg19	19	38229948	38229948	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ZNF573	NM_001172690	exon5	c.T1443C	p.T481T	TGAGCCAGTACTA	.	137.0	24.0	76.0	0.0	.	63	.	.	Atlas-SNP
SPTBN4	57731	hgsc.bcm.edu	hg19	19	40993612	40993612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SPTBN4	NM_020971	exon3	c.G178A	p.E60K	GAGCGGGAAGCCG	.	60.0	22.0	47.0	0.0	.	213	.	.	Atlas-SNP
CEACAM3	1084	hgsc.bcm.edu	hg19	19	42301605	42301605	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CEACAM3	NM_001815	exon2	c.A149T	p.E50V	GGAAGGAGGTGCT	.	195.0	53.0	105.0	0.0	.	37	.	.	Atlas-SNP
SMG9	56006	hgsc.bcm.edu	hg19	19	44249035	44249035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SMG9	NM_019108	exon6	c.A590G	p.Y197C	AACAGGTACTGTG	.	121.0	26.0	72.0	0.0	.	39	.	.	Atlas-SNP
ERCC2	2068	hgsc.bcm.edu	hg19	19	45860629	45860629	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ERCC2	NM_000400	exon15	c.A1378G	p.T460A	ACAGTGTCTGTGG	.	147.0	42.0	91.0	0.0	.	78	.	.	Atlas-SNP
PRR12	57479	hgsc.bcm.edu	hg19	19	50102580	50102580	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	PRR12	NM_020719	exon5	c.G3730C	p.D1244H	TCGGGTGATGCCA	.	73.0	5.0	49.0	0.0	.	157	.	.	Atlas-SNP
ZNF615	284370	hgsc.bcm.edu	hg19	19	52496613	52496613	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ZNF615	NM_001199324	exon7	c.A1749G	p.E583E	GCCACATTCACTG	.	75.0	18.0	47.0	0.0	.	111	.	.	Atlas-SNP
ZNF766	90321	hgsc.bcm.edu	hg19	19	52793977	52793977	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ZNF766	NM_001010851	exon4	c.T933C	p.S311S	TAGCAGTTCATAC	.	167.0	33.0	90.0	0.0	.	45	.	.	Atlas-SNP
ZNF528	84436	hgsc.bcm.edu	hg19	19	52919622	52919622	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ZNF528	NM_032423	exon7	c.C1517A	p.S506X	GCAGTTCAAACCT	.	153.0	43.0	72.0	0.0	.	95	.	.	Atlas-SNP
ZNF415	55786	hgsc.bcm.edu	hg19	19	53613070	53613070	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ZNF415	NM_018355	exon4	c.T228A	p.H76Q	TTTTTCATGTTGT	.	122.0	30.0	72.0	0.0	.	68	.	.	Atlas-SNP
ZNF347	84671	hgsc.bcm.edu	hg19	19	53643694	53643694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ZNF347	NM_001172675	exon5	c.G2390T	p.G797V	GGTTTCCCACACT	.	191.0	43.0	80.0	0.0	.	87	.	.	Atlas-SNP
ZNF761	388561	hgsc.bcm.edu	hg19	19	53959293	53959293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ZNF761	NM_001008401	exon7	c.G1532A	p.C511Y	TCACATGCCATCA	.	142.0	7.0	78.0	0.0	.	104	.	.	Atlas-SNP
BRSK1	84446	hgsc.bcm.edu	hg19	19	55798667	55798667	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	BRSK1	NM_032430	exon3	c.T317A	p.L106X	AATATTTGTAGGT	.	93.0	22.0	42.0	0.0	.	192	.	.	Atlas-SNP
NLRP4	147945	hgsc.bcm.edu	hg19	19	56390306	56390306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	NLRP4	NM_134444	exon9	c.C2843T	p.P948L	GACACCCAGAGTG	.	120.0	38.0	93.0	0.0	.	331	.	.	Atlas-SNP
ZNF329	79673	hgsc.bcm.edu	hg19	19	58639453	58639453	+	Missense_Mutation	SNP	T	T	A	rs201280634	by1000genomes;alternate_allele	TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ZNF329	NM_024620	exon4	c.A1418T	p.H473L	CTCTGGTGCTTGG	.	127.0	28.0	50.0	0.0	.	70	.	T|1.000;C|0.000	Atlas-SNP
FAM110A	83541	hgsc.bcm.edu	hg19	20	826010	826010	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	FAM110A	NM_207121	exon2	c.A563T	p.K188M	GCTCCAAGTCGGA	.	135.0	47.0	172.0	0.0	.	18	.	.	Atlas-SNP
PLCB1	23236	hgsc.bcm.edu	hg19	20	8608966	8608966	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	PLCB1	NM_015192	exon4	c.T272G	p.L91R	TTTTGGATGTGGG	.	126.0	34.0	102.0	0.0	.	394	.	.	Atlas-SNP
MGME1	92667	hgsc.bcm.edu	hg19	20	17968898	17968898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	.	NM_052865	exon4	c.C821T	p.A274V	TTGTGGCATACAT	.	95.0	23.0	93.0	0.0	.	.	.	.	Atlas-SNP
MATN4	8785	hgsc.bcm.edu	hg19	20	43922619	43922619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	MATN4	NM_003833	exon9	c.C1616T	p.P539L	TCGCATGGGCTCC	.	27.0	6.0	25.0	0.0	.	57	.	.	Atlas-SNP
CSE1L	1434	hgsc.bcm.edu	hg19	20	47695153	47695153	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CSE1L	NM_001316	exon14	c.A1476G	p.R492R	TTTTAGAAATCAA	.	55.0	16.0	26.0	0.0	.	83	.	.	Atlas-SNP
BCAS1	8537	hgsc.bcm.edu	hg19	20	52675210	52675210	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	BCAS1	NM_003657	exon2	c.T48A	p.N16K	TGGTTCATTCTCT	.	49.0	17.0	35.0	0.0	.	77	.	.	Atlas-SNP
CASS4	57091	hgsc.bcm.edu	hg19	20	55027580	55027580	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CASS4	NM_020356	exon5	c.A1348T	p.K450X	CAGCACAAGGTGG	.	66.0	18.0	55.0	0.0	.	121	.	.	Atlas-SNP
DIDO1	11083	hgsc.bcm.edu	hg19	20	61526440	61526440	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	DIDO1	NM_080797	exon9	c.T2292C	p.S764S	CTCTTTAGATACA	.	84.0	26.0	60.0	0.0	.	321	.	.	Atlas-SNP
BACE2	25825	hgsc.bcm.edu	hg19	21	42622773	42622773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	BACE2	NM_138992	exon7	c.T1079C	p.I360T	TCTCCATCTACCT	.	63.0	13.0	48.0	0.0	.	45	.	.	Atlas-SNP
CCDC116	164592	hgsc.bcm.edu	hg19	22	21988580	21988580	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CCDC116	NM_152612	exon3	c.A342G	p.P114P	GGACCCAGTGGAG	.	53.0	13.0	46.0	0.0	.	56	.	.	Atlas-SNP
TRIOBP	11078	hgsc.bcm.edu	hg19	22	38120263	38120263	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	TRIOBP	NM_001039141	exon7	c.C1700G	p.P567R	CCTCTCCCAATAG	.	295.0	28.0	250.0	0.0	.	262	.	.	Atlas-SNP
CACNA1I	8911	hgsc.bcm.edu	hg19	22	40059828	40059828	+	Silent	SNP	G	G	A	rs58500586	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CACNA1I	NM_021096	exon19	c.G3579A	p.Q1193Q	GCCTCAGATCGAG	.	51.0	15.0	66.0	0.0	.	264	.	G|0.997;C|0.003	Atlas-SNP
VCX3B	425054	hgsc.bcm.edu	hg19	X	8434394	8434394	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	VCX3B	NM_001001888	exon3	c.G711A	p.E237E	TCAGGAGAGCGAG	.	272.0	26.0	212.0	0.0	.	34	.	.	Atlas-SNP
VCX3B	425054	hgsc.bcm.edu	hg19	X	8434395	8434395	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	VCX3B	NM_001001888	exon3	c.A712T	p.S238C	CAGGAGAGCGAGA	.	272.0	26.0	212.0	0.0	.	34	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	31366711	31366711	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	DMD	NM_004006	exon61	c.A9125C	p.H3042P	TCCCTGTGGGCTT	.	245.0	161.0	125.0	0.0	.	2127	.	.	Atlas-SNP
CXorf22	170063	hgsc.bcm.edu	hg19	X	35989801	35989801	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CXorf22	NM_152632	exon12	c.T2069A	p.L690Q	AGGAGCTGTCTTC	.	192.0	68.0	121.0	0.0	.	272	.	.	Atlas-SNP
ARMCX2	9823	hgsc.bcm.edu	hg19	X	100912386	100912386	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ARMCX2	NM_014782	exon5	c.C189A	p.I63I	AAGGTCGATTGTG	.	40.0	13.0	42.0	0.0	.	75	.	.	Atlas-SNP
WDR44	54521	hgsc.bcm.edu	hg19	X	117570751	117570751	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	WDR44	NM_001184965	exon14	c.T1938A	p.H646Q	TCAACATATAGAT	.	106.0	66.0	65.0	0.0	.	188	.	.	Atlas-SNP
TMEM255A	55026	hgsc.bcm.edu	hg19	X	119410802	119410802	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	.	NM_017938	exon8	c.A685T	p.N229Y	CAATGTTGAGGAT	.	88.0	58.0	68.0	0.0	.	.	.	.	Atlas-SNP
ZNF75D	7626	hgsc.bcm.edu	hg19	X	134427746	134427746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ZNF75D	NM_007131	exon2	c.C321A	p.N107K	CACCCAGTTCTGG	.	77.0	14.0	38.0	0.0	.	65	.	.	Atlas-SNP
ND3	0	hgsc.bcm.edu	hg19	MT	10253	10253	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	.	ENST00000361227	exon1	c.T195C	p.F65F	ATTATTTGATCTA	.	85.0	45.0	24.0	0.0	.	.	.	.	Atlas-SNP
ZNF583	147949	hgsc.bcm.edu	hg19	19	56935118	56935153	+	In_Frame_Del	DEL	GTGGATACCTAATTGTACATCAGAGAATTCATACTG	GTGGATACCTAATTGTACATCAGAGAATTCATACTG	-	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	GTGGATACCTAATTGTACATCAGAGAATTCATACTG	GTGGATACCTAATTGTACATCAGAGAATTCATACTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ZNF583	NM_152478	exon5	c.1090_1125del	p.364_375del	.	.	126.0	18.0	55.0	0.0	.	83	.	.	Atlas-INDEL
UGT2B4	7363	hgsc.bcm.edu	hg19	4	70361213	70361216	+	Frame_Shift_Del	DEL	GTAT	GTAT	-	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	GTAT	GTAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	UGT2B4	NM_021139	exon1	c.365_368del	p.122_123del	.	.	119.0	42.0	89.0	0.0	.	105	.	.	Atlas-INDEL
MAN2B2	23324	hgsc.bcm.edu	hg19	4	6596347	6596354	+	Frame_Shift_Del	DEL	GCTCGGTG	GCTCGGTG	-	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	GCTCGGTG	GCTCGGTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	MAN2B2	NM_015274	exon7	c.944_951del	p.315_317del	.	.	51.0	14.0	46.0	0.0	.	80	.	.	Atlas-INDEL
SLC30A1	7779	hgsc.bcm.edu	hg19	1	211748979	211748980	+	Frame_Shift_Ins	INS	-	-	CCTAC	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SLC30A1	NM_021194	exon2	c.1275_1276insGTAGG	p.G425_S426delinsGX	.	.	84.0	19.0	71.0	0.0	.	27	.	.	Atlas-INDEL
UTRN	7402	hgsc.bcm.edu	hg19	6	144869853	144869874	+	Frame_Shift_Del	DEL	ATTTCAATTCCTGCTGATCTTG	ATTTCAATTCCTGCTGATCTTG	-	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	ATTTCAATTCCTGCTGATCTTG	ATTTCAATTCCTGCTGATCTTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	UTRN	NM_007124	exon46	c.6672_6693del	p.2224_2231del	.	.	102.0	12.0	73.0	0.0	.	327	.	.	Atlas-INDEL
FNDC5	252995	hgsc.bcm.edu	hg19	1	33330349	33330349	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	FNDC5	NM_153756	exon5	c.325delC	p.P109fs	.	.	73.0	22.0	60.0	0.0	.	16	.	.	Atlas-INDEL
SPECC1L	23384	hgsc.bcm.edu	hg19	22	24698203	24698203	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	SPECC1L	NM_001145468	exon2	c.3delG	p.M1fs	.	.	215.0	66.0	147.0	0.0	.	85	.	.	Atlas-INDEL
GPHN	10243	hgsc.bcm.edu	hg19	14	67291253	67291253	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	GPHN	NM_001024218	exon4	c.262delA	p.T88fs	.	.	103.0	25.0	77.0	0.0	.	79	.	.	Atlas-INDEL
CXorf36	79742	hgsc.bcm.edu	hg19	X	45010995	45010995	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	CXorf36	NM_176819	exon5	c.1205delC	p.A402fs	.	.	76.0	54.0	69.0	0.0	.	53	.	.	Atlas-INDEL
ZNF510	22869	hgsc.bcm.edu	hg19	9	99521444	99521447	+	Frame_Shift_Del	DEL	TTTT	TTTT	-	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	TTTT	TTTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ZNF510	NM_014930	exon6	c.1666_1669del	p.556_557del	.	.	88.0	19.0	78.0	0.0	.	59	.	.	Atlas-INDEL
MBOAT7	79143	hgsc.bcm.edu	hg19	19	54677808	54677808	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	MBOAT7	NM_024298	exon8	c.1350delC	p.G450fs	.	.	129.0	16.0	83.0	0.0	.	37	.	.	Atlas-INDEL
NLGN1	22871	hgsc.bcm.edu	hg19	3	173997093	173997094	+	In_Frame_Ins	INS	-	-	ACC	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	NLGN1	NM_014932	exon6	c.1302_1303insACC	p.E434delinsET	.	.	142.0	33.0	81.0	0.0	.	209	.	.	Atlas-INDEL
IMPA1	3612	hgsc.bcm.edu	hg19	8	82598039	82598046	+	Frame_Shift_Del	DEL	CTGTTTCT	CTGTTTCT	-	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	CTGTTTCT	CTGTTTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	IMPA1	NM_001144878	exon2	c.106_113del	p.36_38del	.	.	224.0	59.0	186.0	0.0	.	46	.	.	Atlas-INDEL
COL6A2	1292	hgsc.bcm.edu	hg19	21	47549212	47549215	+	Frame_Shift_Del	DEL	TAAA	TAAA	-	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	TAAA	TAAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	COL6A2	NM_058174	exon28	c.2563_2566del	p.855_856del	.	.	134.0	41.0	147.0	0.0	.	351	.	.	Atlas-INDEL
ANO5	203859	hgsc.bcm.edu	hg19	11	22247597	22247597	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	.	ANO5	NM_213599	exon6	c.361delA	p.R121fs	.	.	326.0	79.0	228.0	0.0	.	162	.	.	Atlas-INDEL
GRIK1	2897	hgsc.bcm.edu	hg19	21	30927495	30927497	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	GRIK1_ENST00000399907,NS,carcinoma,0,2	GRIK1	NM_000830	exon16	c.2484_2486del	p.828_829del	.	.	58.0	18.0	56.0	0.0	.	293	.	.	Atlas-INDEL
HGF	3082	hgsc.bcm.edu	hg19	7	81350161	81350197	+	Frame_Shift_Del	DEL	AATCTAGACATAAAATATACAGAAATAAGTCCAATGA	AATCTAGACATAAAATATACAGAAATAAGTCCAATGA	-	novel		TCGA-DD-AAE7-01A-11D-A40R-10	TCGA-DD-AAE7-10A-01D-A40U-10	AATCTAGACATAAAATATACAGAAATAAGTCCAATGA	AATCTAGACATAAAATATACAGAAATAAGTCCAATGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b7fc7c0-18c0-4c05-9a0a-5493e05b850c	b24da751-d43f-49c4-80e4-ac9d237e5bbe	HGF,colon,carcinoma,0,1	HGF	NM_000601	exon10	c.1169_1172del	p.390_391del	.	.	76.0	18.0	44.0	0.0	.	171	.	.	Atlas-INDEL
