Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ARHGEF10L	55160	hgsc.bcm.edu	hg19	1	17981137	17981137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	ARHGEF10L	NM_018125	exon23	c.G2401T	p.A801S	CTTGGGGCCCTGG	.	33.0	24.0	35.0	0.0	.	219	.	.	Atlas-SNP
HSPG2	3339	hgsc.bcm.edu	hg19	1	22158249	22158249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	HSPG2	NM_005529	exon82	c.A11248G	p.T3750A	GTGGTGTGGGATG	.	224.0	171.0	301.0	1.0	.	311	.	.	Atlas-SNP
PCSK9	255738	hgsc.bcm.edu	hg19	1	55527047	55527047	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	PCSK9	NM_174936	exon11	c.1682-1G>T	.	GCCCCAGGCTGCA	.	199.0	99.0	285.0	0.0	.	76	.	.	Atlas-SNP
FPGT-TNNI3K	100526835	hgsc.bcm.edu	hg19	1	74833646	74833646	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	.	NM_001112808	exon15	c.A1622T	p.K541I	TGACAAAAGGTAC	.	289.0	94.0	358.0	0.0	.	.	.	.	Atlas-SNP
INTS3	65123	hgsc.bcm.edu	hg19	1	153743174	153743174	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	INTS3	NM_023015	exon25	c.C2517T	p.A839A	AGAGGCCCTGTCC	.	69.0	26.0	54.0	0.0	.	83	.	.	Atlas-SNP
LRRC71	149499	hgsc.bcm.edu	hg19	1	156899104	156899104	+	Silent	SNP	G	G	C	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	LRRC71	NM_144702	exon10	c.G1029C	p.T343T	CAAAACGGACCGT	.	167.0	20.0	125.0	0.0	.	33	.	.	Atlas-SNP
CTSE	1510	hgsc.bcm.edu	hg19	1	206319173	206319173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	CTSE	NM_001910	exon3	c.T298C	p.S100P	GGCTCCTCCAACC	.	109.0	44.0	57.0	0.0	.	72	.	.	Atlas-SNP
DIEXF	27042	hgsc.bcm.edu	hg19	1	210010380	210010380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	DIEXF	NM_014388	exon6	c.G886A	p.E296K	TACCCGGAAAGGA	.	213.0	104.0	130.0	0.0	.	97	.	.	Atlas-SNP
ALLC	55821	hgsc.bcm.edu	hg19	2	3729266	3729266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	ALLC	NM_018436	exon6	c.C341T	p.A114V	CAGGAGCTGCAGC	.	83.0	35.0	110.0	0.0	.	61	.	.	Atlas-SNP
TUBA3E	112714	hgsc.bcm.edu	hg19	2	130951585	130951585	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	TUBA3E	NM_207312	exon4	c.C830A	p.S277X	TCAGCTGAGATGA	.	77.0	4.0	113.0	0.0	.	73	.	.	Atlas-SNP
ZNF804A	91752	hgsc.bcm.edu	hg19	2	185802939	185802939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	ZNF804A,mucosal,malignant_melanoma,0,1	ZNF804A	NM_194250	exon4	c.G2816A	p.R939K	AAGAAAGAAGTGA	.	119.0	49.0	151.0	0.0	.	322	.	.	Atlas-SNP
GPR55	9290	hgsc.bcm.edu	hg19	2	231775507	231775507	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	GPR55	NM_005683	exon2	c.T171A	p.A57A	GGTGGCAGCATAA	.	171.0	61.0	229.0	0.0	.	46	.	.	Atlas-SNP
NMUR1	10316	hgsc.bcm.edu	hg19	2	232393719	232393719	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	NMUR1	NM_006056	exon2	c.T13G	p.C5G	TGAGGCAGAGAGG	.	26.0	11.0	39.0	0.0	.	46	.	.	Atlas-SNP
TRPM8	79054	hgsc.bcm.edu	hg19	2	234863846	234863846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	TRPM8	NM_024080	exon11	c.G1314T	p.Q438H	GAACCAGCTGGAC	.	107.0	40.0	127.0	0.0	.	146	.	.	Atlas-SNP
SRGAP3	9901	hgsc.bcm.edu	hg19	3	9094837	9094837	+	Silent	SNP	G	G	C	rs369059791	alternate_allele	TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	SRGAP3	NM_014850	exon9	c.C1197G	p.S399S	GGCATCGGAGACA	.	104.0	9.0	104.0	0.0	.	146	.	.	Atlas-SNP
EOMES	8320	hgsc.bcm.edu	hg19	3	27763181	27763181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	EOMES	NM_005442	exon1	c.C605A	p.P202Q	CCGGGTGGGCACA	.	80.0	35.0	60.0	0.0	.	65	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266124	41266124	+	Missense_Mutation	SNP	A	A	G	rs121913412	bycluster	TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	CTNNB1,gallbladder,other,0,1	CTNNB1	NM_001098209	exon3	c.A121G	p.T41A	GCCACTACCACAG	.	153.0	93.0	151.0	0.0	.	4904	.	.	Atlas-SNP
SENP7	57337	hgsc.bcm.edu	hg19	3	101059023	101059023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	SENP7	NM_020654	exon16	c.G2273T	p.G758V	AATCCCCCCTTAG	.	567.0	152.0	437.0	0.0	.	170	.	.	Atlas-SNP
N4BP2	55728	hgsc.bcm.edu	hg19	4	40122514	40122514	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	N4BP2	NM_018177	exon9	c.A2783T	p.E928V	CACATGAGGCCTG	.	187.0	71.0	215.0	0.0	.	166	.	.	Atlas-SNP
MRPL1	65008	hgsc.bcm.edu	hg19	4	78830432	78830432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	MRPL1	NM_020236	exon7	c.G683T	p.R228L	TTGGCCGTGACAT	.	447.0	162.0	550.0	0.0	.	37	.	.	Atlas-SNP
VEGFC	7424	hgsc.bcm.edu	hg19	4	177650707	177650707	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	VEGFC	NM_005429	exon2	c.A341T	p.Y114F	GTATTATAATGTG	.	50.0	19.0	75.0	0.0	.	94	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13692162	13692162	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	DNAH5	NM_001369	exon79	c.T13806A	p.D4602E	CCTGAGATCCACA	.	124.0	48.0	158.0	0.0	.	868	.	.	Atlas-SNP
RAPGEF6	51735	hgsc.bcm.edu	hg19	5	130938979	130938979	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	RAPGEF6	NM_001164387	exon3	c.A182G	p.N61S	ACCTGATTGCCAC	.	384.0	113.0	458.0	0.0	.	361	.	.	Atlas-SNP
PCDHB1	29930	hgsc.bcm.edu	hg19	5	140432978	140432978	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	PCDHB1	NM_013340	exon1	c.G1923A	p.L641L	GAAATTGATCATT	.	91.0	37.0	86.0	0.0	.	148	.	.	Atlas-SNP
SLIT3	6586	hgsc.bcm.edu	hg19	5	168727521	168727521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	SLIT3	NM_001271946	exon1	c.C193A	p.R65S	ACAGGCGCTCAGC	.	90.0	35.0	120.0	0.0	.	224	.	.	Atlas-SNP
HK3	3101	hgsc.bcm.edu	hg19	5	176318414	176318414	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	HK3	NM_002115	exon3	c.C234T	p.Y78Y	CCCCACGTATGTA	.	32.0	16.0	51.0	0.0	.	210	.	.	Atlas-SNP
DOK3	79930	hgsc.bcm.edu	hg19	5	176930063	176930063	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	DOK3	NM_001144875	exon6	c.A976T	p.T326S	CAAGGGTGTGTGC	.	49.0	22.0	62.0	0.0	.	41	.	.	Atlas-SNP
BTN3A1	11119	hgsc.bcm.edu	hg19	6	26413486	26413486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	BTN3A1	NM_007048	exon10	c.G1108T	p.D370Y	CCCCAGGATCTGC	.	288.0	52.0	204.0	0.0	.	80	.	.	Atlas-SNP
HLA-A	3105	hgsc.bcm.edu	hg19	6	29910588	29910588	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	HLA-A	NM_001242758	exon2	c.A128T	p.E43V	GCGGGGAGCCCCG	.	195.0	63.0	129.0	0.0	.	89	.	.	Atlas-SNP
CCHCR1	54535	hgsc.bcm.edu	hg19	6	31122472	31122472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	CCHCR1_ENST00000396268,NS,carcinoma,0,3	CCHCR1	NM_001105564	exon4	c.G602T	p.R201L	GTCTCCCGCAGGA	.	97.0	72.0	55.0	0.0	.	68	.	.	Atlas-SNP
LHFPL5	222662	hgsc.bcm.edu	hg19	6	35773575	35773575	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	LHFPL5	NM_182548	exon1	c.T128A	p.L43H	TGGCCCTCTTCAT	.	149.0	55.0	128.0	0.0	.	44	.	.	Atlas-SNP
DAAM2	23500	hgsc.bcm.edu	hg19	6	39851783	39851783	+	Missense_Mutation	SNP	G	G	C	rs376832339	alternate_allele	TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	DAAM2	NM_015345	exon15	c.G1891C	p.V631L	ATGCAGGTATTTC	.	137.0	19.0	58.0	0.0	.	101	.	.	Atlas-SNP
DLK2	65989	hgsc.bcm.edu	hg19	6	43419007	43419007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	DLK2	NM_023932	exon6	c.C422T	p.P141L	CGGCATGGGGAGC	.	181.0	53.0	99.0	0.0	.	22	.	.	Atlas-SNP
YIPF3	25844	hgsc.bcm.edu	hg19	6	43480851	43480851	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	YIPF3	NM_015388	exon6	c.C622T	p.L208L	TGCACAGGTAGGC	.	158.0	34.0	83.0	0.0	.	20	.	.	Atlas-SNP
HCRTR2	3062	hgsc.bcm.edu	hg19	6	55145187	55145187	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	HCRTR2	NM_001526	exon6	c.C1050G	p.H350Q	TTCACACTGGCTT	.	186.0	44.0	119.0	0.0	.	112	.	.	Atlas-SNP
NPSR1	387129	hgsc.bcm.edu	hg19	7	34867102	34867102	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	NPSR1	NM_207172	exon5	c.C568G	p.L190V	AGGACACTGTCCA	.	108.0	61.0	120.0	0.0	.	134	.	.	Atlas-SNP
TNS3	64759	hgsc.bcm.edu	hg19	7	47440024	47440024	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	TNS3	NM_022748	exon15	c.A885G	p.E295E	GACTAATTCAACC	.	216.0	56.0	230.0	0.0	.	140	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48413971	48413971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	ABCA13	NM_152701	exon34	c.C11161A	p.Q3721K	TTTGGACAAGGGG	.	137.0	30.0	121.0	0.0	.	1192	.	.	Atlas-SNP
CHCHD3	54927	hgsc.bcm.edu	hg19	7	132659975	132659975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	CHCHD3	NM_017812	exon4	c.G323A	p.R108Q	CTCTCCCGAAGGA	.	101.0	11.0	85.0	0.0	.	21	.	.	Atlas-SNP
TEX15	56154	hgsc.bcm.edu	hg19	8	30706087	30706087	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	TEX15,NS,carcinoma,0,1	TEX15	NM_031271	exon1	c.T447C	p.C149C	GTCCTTACATTGC	.	56.0	28.0	113.0	0.0	.	350	.	.	Atlas-SNP
POTEA	340441	hgsc.bcm.edu	hg19	8	43173614	43173614	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	POTEA	NM_001005365	exon9	c.C1036T	p.Q346X	GAAATGCAGAAGC	.	129.0	94.0	268.0	1.0	.	87	.	.	Atlas-SNP
TPD52	7163	hgsc.bcm.edu	hg19	8	80954863	80954863	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	TPD52	NM_001025252	exon5	c.A547T	p.N183Y	TTAAGTTTTCGAC	.	107.0	20.0	52.0	0.0	.	40	.	.	Atlas-SNP
NECAB1	64168	hgsc.bcm.edu	hg19	8	91836943	91836943	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	NECAB1	NM_022351	exon3	c.125-2A>T	.	CATTTCAGATGAT	.	328.0	44.0	179.0	0.0	.	31	.	.	Atlas-SNP
TOP1MT	116447	hgsc.bcm.edu	hg19	8	144416922	144416922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	TOP1MT	NM_052963	exon1	c.G110A	p.G37D	CCACTGCCCTTCT	.	256.0	85.0	150.0	0.0	.	63	.	.	Atlas-SNP
ZNF7	7553	hgsc.bcm.edu	hg19	8	146068419	146068419	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	ZNF7	NM_003416	exon5	c.T1927G	p.F643V	AAGATATTTAGGT	.	205.0	38.0	126.0	0.0	.	62	.	.	Atlas-SNP
ZNF7	7553	hgsc.bcm.edu	hg19	8	146068438	146068438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	ZNF7	NM_003416	exon5	c.T1946C	p.L649P	CACACCTAATTAT	.	215.0	34.0	139.0	0.0	.	62	.	.	Atlas-SNP
C9orf64	84267	hgsc.bcm.edu	hg19	9	86559849	86559849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	C9orf64	NM_032307	exon3	c.G653A	p.S218N	AATACACTCCACG	.	80.0	35.0	101.0	0.0	.	28	.	.	Atlas-SNP
ABCA1	19	hgsc.bcm.edu	hg19	9	107571793	107571793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	ABCA1	NM_005502	exon30	c.A4228G	p.K1410E	GGTCTTTGGTGAG	.	114.0	37.0	144.0	0.0	.	244	.	.	Atlas-SNP
KIAA0368	23392	hgsc.bcm.edu	hg19	9	114187765	114187765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	KIAA0368	NM_001080398	exon13	c.T1682C	p.I561T	ATCTTGATTTCTG	.	169.0	50.0	214.0	0.0	.	144	.	.	Atlas-SNP
OR1L4	254973	hgsc.bcm.edu	hg19	9	125486747	125486747	+	Missense_Mutation	SNP	G	G	A	rs370090548		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	OR1L4	NM_001005235	exon1	c.G479A	p.R160H	TGTTCCGCGTGCT	.	89.0	24.0	130.0	0.0	.	38	.	.	Atlas-SNP
SLC25A25	114789	hgsc.bcm.edu	hg19	9	130866085	130866085	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	SLC25A25	NM_001006641	exon5	c.G714T	p.T238T	CTGCACGGCCCCC	.	60.0	23.0	87.0	0.0	.	119	.	.	Atlas-SNP
ANAPC2	29882	hgsc.bcm.edu	hg19	9	140075299	140075299	+	Silent	SNP	A	A	G	rs371943537		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	ANAPC2	NM_013366	exon8	c.T1551C	p.N517N	GTACTCATTGATG	.	39.0	13.0	59.0	0.0	.	57	.	.	Atlas-SNP
ANAPC2	29882	hgsc.bcm.edu	hg19	9	140075345	140075345	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	ANAPC2	NM_013366	exon8	c.T1505G	p.I502S	AGGCTGATGATGT	.	47.0	22.0	61.0	0.0	.	57	.	.	Atlas-SNP
GDI2	2665	hgsc.bcm.edu	hg19	10	5836921	5836921	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	GDI2	NM_001494	exon4	c.T315A	p.T105T	CCCTTCAGTCACT	.	166.0	83.0	143.0	0.0	.	26	.	.	Atlas-SNP
SFMBT2	57713	hgsc.bcm.edu	hg19	10	7217971	7217971	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	SFMBT2	NM_001029880	exon17	c.T1965C	p.I655I	GGTATGAATGGAG	.	92.0	49.0	77.0	0.0	.	209	.	.	Atlas-SNP
RTKN2	219790	hgsc.bcm.edu	hg19	10	63958086	63958086	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	RTKN2	NM_145307	exon12	c.G1411C	p.A471P	GTGTGGCCCAAGG	.	106.0	58.0	98.0	0.0	.	68	.	.	Atlas-SNP
P4HA1	5033	hgsc.bcm.edu	hg19	10	74810812	74810812	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	P4HA1	NM_001142596	exon7	c.T899C	p.M300T	TTTACCATTTTGA	.	102.0	59.0	88.0	0.0	.	86	.	.	Atlas-SNP
LOXL4	84171	hgsc.bcm.edu	hg19	10	100013487	100013487	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	LOXL4	NM_032211	exon11	c.T1658A	p.L553H	TGGCTGAGCGGGC	.	76.0	14.0	82.0	0.0	.	60	.	.	Atlas-SNP
MGEA5	10724	hgsc.bcm.edu	hg19	10	103557782	103557782	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	MGEA5	NM_012215	exon10	c.A1939T	p.I647F	TCTTGATATCCCA	.	70.0	37.0	90.0	0.0	.	53	.	.	Atlas-SNP
ADAM12	8038	hgsc.bcm.edu	hg19	10	127753435	127753435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	ADAM12	NM_021641	exon14	c.T1558C	p.Y520H	AGCAGTAGCCGTC	.	51.0	13.0	63.0	0.0	.	388	.	.	Atlas-SNP
WT1	7490	hgsc.bcm.edu	hg19	11	32456885	32456885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	WT1	NM_024424	exon1	c.G7A	p.D3N	CCGGGTCCTGCAG	.	148.0	50.0	203.0	0.0	.	744	.	.	Atlas-SNP
CAT	847	hgsc.bcm.edu	hg19	11	34478274	34478274	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	CAT	NM_001752	exon8	c.A966G	p.P322P	GAATCCAGTTAAT	.	119.0	48.0	166.0	0.0	.	42	.	.	Atlas-SNP
SLC22A9	114571	hgsc.bcm.edu	hg19	11	63176251	63176251	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	SLC22A9	NM_080866	exon9	c.A1501G	p.I501V	TGGATCATCTATG	.	111.0	38.0	147.0	0.0	.	77	.	.	Atlas-SNP
RAB30	27314	hgsc.bcm.edu	hg19	11	82693383	82693383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	RAB30	NM_014488	exon6	c.A436G	p.M146V	AATACATGTCCTG	.	77.0	30.0	82.0	0.0	.	28	.	.	Atlas-SNP
ARHGEF12	23365	hgsc.bcm.edu	hg19	11	120350697	120350697	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	ARHGEF12	NM_015313	exon38	c.A3795T	p.Q1265H	GGTGCAACAGCTA	.	108.0	40.0	114.0	0.0	.	133	.	.	Atlas-SNP
CLEC6A	93978	hgsc.bcm.edu	hg19	12	8612284	8612284	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	CLEC6A	NM_001007033	exon3	c.A213G	p.T71T	AGGGACAAAGGTG	.	63.0	18.0	82.0	0.0	.	19	.	.	Atlas-SNP
ABCD2	225	hgsc.bcm.edu	hg19	12	40012907	40012907	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	ABCD2	NM_005164	exon1	c.T511C	p.L171L	AAGCCAATTTGCA	.	223.0	96.0	263.0	0.0	.	127	.	.	Atlas-SNP
HDAC7	51564	hgsc.bcm.edu	hg19	12	48179583	48179583	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	HDAC7	NM_015401	exon23	c.C2658A	p.A886A	ACAGATGGCTGTG	.	135.0	53.0	189.0	0.0	.	71	.	.	Atlas-SNP
SYT1	6857	hgsc.bcm.edu	hg19	12	79837902	79837902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	SYT1	NM_001135805	exon11	c.G978T	p.K326N	GAAGAAGAAAAAG	.	93.0	31.0	142.0	0.0	.	70	.	.	Atlas-SNP
OTOGL	283310	hgsc.bcm.edu	hg19	12	80707277	80707277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	OTOGL	NM_173591	exon30	c.A3445G	p.K1149E	TTTGCCAAAAATT	.	98.0	34.0	115.0	0.0	.	235	.	.	Atlas-SNP
AMDHD1	144193	hgsc.bcm.edu	hg19	12	96360166	96360166	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	AMDHD1	NM_152435	exon8	c.C1073G	p.S358C	GAATGTCCATGCC	.	75.0	24.0	78.0	0.0	.	56	.	.	Atlas-SNP
HCAR2	338442	hgsc.bcm.edu	hg19	12	123187347	123187347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	HCAR2	NM_177551	exon1	c.C484A	p.L162I	TCAGGAGGTGGAC	.	145.0	27.0	109.0	0.0	.	36	.	.	Atlas-SNP
WASF3	10810	hgsc.bcm.edu	hg19	13	27255212	27255212	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	WASF3	NM_006646	exon8	c.G738A	p.T246T	CGTTACGGATTAC	.	159.0	61.0	169.0	0.0	.	68	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103393484	103393484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	.	NM_001146197	exon4	c.A9563G	p.K3188R	TTCTCTTTATTCT	.	74.0	31.0	107.0	0.0	.	.	.	.	Atlas-SNP
ANG	283	hgsc.bcm.edu	hg19	14	21162046	21162046	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	ANG	NM_001097577	exon2	c.A323T	p.H108L	AGCTACATGGAGG	.	202.0	55.0	216.0	0.0	.	8	.	.	Atlas-SNP
RPGRIP1	57096	hgsc.bcm.edu	hg19	14	21790033	21790033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	RPGRIP1	NM_020366	exon13	c.G1632A	p.M544I	AATGATGACAAAA	.	159.0	48.0	159.0	0.0	.	213	.	.	Atlas-SNP
RPGRIP1	57096	hgsc.bcm.edu	hg19	14	21790034	21790034	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	RPGRIP1	NM_020366	exon13	c.A1633T	p.T545S	ATGATGACAAAAG	.	156.0	46.0	161.0	0.0	.	213	.	.	Atlas-SNP
STXBP6	29091	hgsc.bcm.edu	hg19	14	25325147	25325147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	STXBP6	NM_014178	exon4	c.T446C	p.M149T	CCTCCCATAATTT	.	101.0	25.0	93.0	0.0	.	22	.	.	Atlas-SNP
ZFYVE26	23503	hgsc.bcm.edu	hg19	14	68257468	68257468	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	ZFYVE26	NM_015346	exon15	c.A2576T	p.K859M	GAGGACTTCAGGT	.	121.0	53.0	154.0	0.0	.	223	.	.	Atlas-SNP
PTPN21	11099	hgsc.bcm.edu	hg19	14	88945839	88945839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	PTPN21	NM_007039	exon13	c.G1936T	p.G646C	CCAGGCCGTGGCT	.	33.0	12.0	33.0	0.0	.	113	.	.	Atlas-SNP
TTC8	123016	hgsc.bcm.edu	hg19	14	89336480	89336480	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	TTC8	NM_144596	exon11	c.C987G	p.I329M	AGCCATCGCATGC	.	110.0	44.0	142.0	0.0	.	42	.	.	Atlas-SNP
TBC1D2B	23102	hgsc.bcm.edu	hg19	15	78305207	78305207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	TBC1D2B	NM_144572	exon9	c.C2228A	p.S743Y	CGCCAGGAGAAGG	.	98.0	78.0	122.0	0.0	.	104	.	.	Atlas-SNP
PRSS21	10942	hgsc.bcm.edu	hg19	16	2867809	2867809	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	PRSS21	NM_144957	exon3	c.C99A	p.C33X	ACCATGCGGCCGA	.	60.0	8.0	95.0	0.0	.	32	.	.	Atlas-SNP
RBFOX1	54715	hgsc.bcm.edu	hg19	16	7726804	7726804	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	RBFOX1	NM_145891	exon11	c.A1022T	p.Q341L	ACGCCCAGCCTAC	.	39.0	20.0	64.0	0.0	.	341	.	.	Atlas-SNP
ORAI3	93129	hgsc.bcm.edu	hg19	16	30964577	30964577	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	ORAI3	NM_152288	exon2	c.C300T	p.A100A	CAGTGCCTGCACC	.	43.0	5.0	62.0	0.0	.	19	.	.	Atlas-SNP
YBX2	51087	hgsc.bcm.edu	hg19	17	7193784	7193784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	YBX2	NM_015982	exon5	c.G530A	p.R177Q	TTACGTCGGTTGG	.	74.0	20.0	95.0	0.0	.	28	.	.	Atlas-SNP
ZBTB4	57659	hgsc.bcm.edu	hg19	17	7366504	7366504	+	Silent	SNP	A	A	C	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	ZBTB4	NM_001128833	exon4	c.T1797G	p.P599P	CAGTGGAGGTGGA	.	26.0	9.0	22.0	0.0	.	163	.	.	Atlas-SNP
NF1	4763	hgsc.bcm.edu	hg19	17	29586118	29586118	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	NF1	NM_001042492	exon33	c.T4401A	p.F1467L	TGATTTTGTGAAA	.	114.0	5.0	132.0	0.0	.	1586	.	.	Atlas-SNP
ARHGAP23	57636	hgsc.bcm.edu	hg19	17	36666304	36666304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	ARHGAP23	NM_001199417	exon24	c.A3572G	p.D1191G	CCGACGACGACTC	.	24.0	5.0	32.0	0.0	.	48	.	.	Atlas-SNP
G6PC	2538	hgsc.bcm.edu	hg19	17	41063257	41063257	+	Silent	SNP	C	C	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	G6PC	NM_000151	exon5	c.C888G	p.L296L	CCGCCTCAGCTCT	.	104.0	30.0	140.0	0.0	.	48	.	.	Atlas-SNP
MRC2	9902	hgsc.bcm.edu	hg19	17	60742244	60742244	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	MRC2	NM_006039	exon2	c.C454T	p.Q152X	GGTGACCAGACCC	.	59.0	22.0	86.0	0.0	.	126	.	.	Atlas-SNP
OSBPL1A	114876	hgsc.bcm.edu	hg19	18	21948322	21948322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	OSBPL1A	NM_080597	exon3	c.A136G	p.N46D	CCAAGTTAGACTT	.	426.0	151.0	476.0	0.0	.	94	.	.	Atlas-SNP
C19orf26	255057	hgsc.bcm.edu	hg19	19	1231033	1231033	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.,1	C19orf26	NM_152769	exon9	c.T1221C	p.P407P	CCGCCTAGGGGGG	.	59.0	28.0	103.0	1.0	.	31	.	.	Atlas-SNP
CNN1	1264	hgsc.bcm.edu	hg19	19	11660435	11660435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	CNN1	NM_001299	exon7	c.C719T	p.T240M	GCGACACGCTCAA	.	103.0	35.0	134.0	0.0	.	34	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	39055621	39055621	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	RYR1	NM_000540	exon91	c.T12647A	p.F4216Y	GCCAGTTCATCTT	.	706.0	277.0	984.0	0.0	.	708	.	.	Atlas-SNP
PSG8	440533	hgsc.bcm.edu	hg19	19	43268178	43268178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	PSG8	NM_001130167	exon2	c.T320C	p.L107P	ATCAGCAGGGATG	.	69.0	23.0	113.0	0.0	.	101	.	.	Atlas-SNP
ZNF45	7596	hgsc.bcm.edu	hg19	19	44419099	44419099	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	ZNF45	NM_003425	exon10	c.C489T	p.P163P	TTTGTAGGGTTTT	.	76.0	28.0	71.0	0.0	.	51	.	.	Atlas-SNP
EHD2	30846	hgsc.bcm.edu	hg19	19	48221838	48221838	+	Silent	SNP	G	G	A	rs369297316	alternate_allele	TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	EHD2	NM_014601	exon3	c.G477A	p.S159S	CCTGTCGGGTGCC	.	55.0	21.0	56.0	0.0	.	59	.	.	Atlas-SNP
POLD1	5424	hgsc.bcm.edu	hg19	19	50902183	50902183	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	POLD1	NM_002691	exon2	c.T75C	p.D25D	GGATGATGATGAT	.	78.0	20.0	117.0	0.0	.	174	.	.	Atlas-SNP
ZNF841	284371	hgsc.bcm.edu	hg19	19	52569046	52569046	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	ZNF841	NM_001136499	exon7	c.G2089T	p.A697S	ATCTTGCAAGTTT	.	125.0	6.0	139.0	0.0	.	183	.	.	Atlas-SNP
EPS8L1	54869	hgsc.bcm.edu	hg19	19	55592156	55592156	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	EPS8L1	NM_133180	exon7	c.A446T	p.E149V	TCCGAGAGGACAT	.	179.0	73.0	210.0	0.0	.	122	.	.	Atlas-SNP
WISP2	8839	hgsc.bcm.edu	hg19	20	43353453	43353453	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	WISP2	NM_003881	exon3	c.A352T	p.S118C	CACTGCAGCATCC	.	150.0	37.0	155.0	0.0	.	28	.	.	Atlas-SNP
BAGE3	85318	hgsc.bcm.edu	hg19	21	11058299	11058299	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	.	NM_182481	exon3	c.G141C	p.L47F	TGGCTCCAAAGTG	.	225.0	12.0	346.0	0.0	.	.	.	.	Atlas-SNP
GRIK1	2897	hgsc.bcm.edu	hg19	21	31062249	31062249	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	GRIK1	NM_175611	exon3	c.T343A	p.S115T	TGACGGAGGAGCT	.	93.0	43.0	130.0	0.0	.	293	.	.	Atlas-SNP
DOPEY2	9980	hgsc.bcm.edu	hg19	21	37617730	37617730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	DOPEY2	NM_005128	exon19	c.G3452A	p.G1151E	CCATGGGGGGCAG	.	70.0	25.0	80.0	0.0	.	184	.	.	Atlas-SNP
PRMT2	3275	hgsc.bcm.edu	hg19	21	48064248	48064248	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	PRMT2	NM_001242864	exon4	c.A175T	p.I59F	ATTCTTATCCTGA	.	78.0	33.0	105.0	0.0	.	48	.	.	Atlas-SNP
NCF4	4689	hgsc.bcm.edu	hg19	22	37271978	37271978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	NCF4	NM_013416	exon8	c.C911T	p.P304L	AACGTCCAGGGTG	.	112.0	35.0	178.0	0.0	.	66	.	.	Atlas-SNP
HDX	139324	hgsc.bcm.edu	hg19	X	83588776	83588776	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	HDX	NM_144657	exon8	c.G1815A	p.L605L	ATAATCCAAGAAA	.	270.0	220.0	199.0	0.0	.	124	.	.	Atlas-SNP
HDX	139324	hgsc.bcm.edu	hg19	X	83588777	83588777	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	HDX	NM_144657	exon8	c.T1814G	p.L605W	TAATCCAAGAAAG	.	271.0	223.0	199.0	0.0	.	124	.	.	Atlas-SNP
ARMCX2	9823	hgsc.bcm.edu	hg19	X	100911840	100911840	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	ARMCX2	NM_014782	exon5	c.T735C	p.P245P	TGTTCTAGGGGAA	.	75.0	4.0	52.0	0.0	.	75	.	.	Atlas-SNP
AIFM1	9131	hgsc.bcm.edu	hg19	X	129265689	129265689	+	Missense_Mutation	SNP	T	T	C	rs369259253		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	AIFM1	NM_004208	exon14	c.A1534G	p.T512A	GTGCAGTTGCTTT	.	115.0	97.0	94.0	0.0	.	75	.	.	Atlas-SNP
ABCD1	215	hgsc.bcm.edu	hg19	X	153005587	153005587	+	Silent	SNP	C	C	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	ABCD1	NM_000033	exon6	c.C1530G	p.G510G	CAATGGCTGCGGC	.	85.0	41.0	52.0	0.0	.	59	.	.	Atlas-SNP
COX2	5743	hgsc.bcm.edu	hg19	MT	7907	7907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	.	ENST00000361739	exon1	c.T322C	p.Y108H	TGAACCTACGAGT	.	117.0	19.0	18.0	0.0	.	.	.	.	Atlas-SNP
ND4	0	hgsc.bcm.edu	hg19	MT	10827	10827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	.	ENST00000361381	exon1	c.T68C	p.I23T	ACATAATTTGAAT	.	119.0	15.0	12.0	0.0	.	.	.	.	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15431	15431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	.	ENST00000361789	exon1	c.G685A	p.A229T	AAAGACGCCCTCG	.	108.0	102.0	14.0	0.0	.	.	.	.	Atlas-SNP
TMEM81	388730	hgsc.bcm.edu	hg19	1	205052921	205052921	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	TMEM81	NM_203376	exon1	c.529delG	p.G177fs	.	.	253.0	104.0	148.0	0.0	.	23	.	.	Atlas-INDEL
APOB	338	hgsc.bcm.edu	hg19	2	21234820	21234821	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	APOB	NM_000384	exon26	c.4920_4921insC	p.A1640fs	.	.	62.0	26.0	56.0	0.0	.	761	.	.	Atlas-INDEL
DNM1L	10059	hgsc.bcm.edu	hg19	12	32883956	32883977	+	Frame_Shift_Del	DEL	GTGCTAGAATTTGTTATATTTT	GTGCTAGAATTTGTTATATTTT	-	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	GTGCTAGAATTTGTTATATTTT	GTGCTAGAATTTGTTATATTTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	DNM1L	NM_012062	exon10	c.1087_1108del	p.363_370del	.	.	87.0	13.0	120.0	0.0	.	52	.	.	Atlas-INDEL
FREM2	341640	hgsc.bcm.edu	hg19	13	39265017	39265018	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	FREM2	NM_207361	exon1	c.3536_3537insC	p.F1179fs	.	.	101.0	40.0	142.0	0.0	.	385	.	.	Atlas-INDEL
FAM71C	196472	hgsc.bcm.edu	hg19	12	100043076	100043076	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AAE9-01A-11D-A40R-10	TCGA-DD-AAE9-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	870e02bb-395f-439a-99fd-00d1054e69d9	864a2672-99b0-4252-9953-5feb85ff19d6	.	FAM71C	NM_153364	exon2	c.625delA	p.M209X	.	.	65.0	19.0	93.0	0.0	.	48	.	.	Atlas-INDEL
