Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
MMACHC	25974	hgsc.bcm.edu	hg19	1	45974808	45974808	+	Missense_Mutation	SNP	C	C	T	rs201601241	bycluster	TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	MMACHC	NM_015506	exon4	c.C770T	p.P257L	CCGCCCCCAAGAA	.	87.0	45.0	80.0	0.0	.	22	.	.	Atlas-SNP
TTC24	164118	hgsc.bcm.edu	hg19	1	156551636	156551636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	TTC24	NM_001105669	exon2	c.G480A	p.M160I	AAAAATGGGAGCC	.	145.0	93.0	94.0	0.0	.	46	.	.	Atlas-SNP
ATP1A2	477	hgsc.bcm.edu	hg19	1	160094210	160094210	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	ATP1A2	NM_000702	exon6	c.A620G	p.H207R	CTTCTCATGGCTG	.	124.0	37.0	79.0	0.0	.	167	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181693620	181693620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	CACNA1E	NM_001205293	exon17	c.G2089T	p.V697L	CTGAATGTGTTCT	.	99.0	51.0	50.0	0.0	.	778	.	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	216011440	216011440	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	USH2A	NM_206933	exon47	c.A9264G	p.E3088E	GCAGACTTCAACC	.	211.0	63.0	138.0	0.0	.	1168	.	.	Atlas-SNP
GPR137B	7107	hgsc.bcm.edu	hg19	1	236306038	236306038	+	Missense_Mutation	SNP	C	C	A	rs199613305	alternate_allele	TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	GPR137B	NM_003272	exon1	c.C116A	p.P39H	TGCCCCCCTACGT	.	100.0	60.0	54.0	0.0	.	57	.	C|0.999;T|0.001	Atlas-SNP
PXDN	7837	hgsc.bcm.edu	hg19	2	1667507	1667507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	PXDN	NM_012293	exon12	c.C1437A	p.H479Q	GACCAGGTGCCGC	.	52.0	19.0	23.0	0.0	.	255	.	.	Atlas-SNP
MFSD9	84804	hgsc.bcm.edu	hg19	2	103340215	103340215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	MFSD9	NM_032718	exon5	c.A581G	p.E194G	CCATCCTCTAATT	.	101.0	41.0	99.0	0.0	.	56	.	.	Atlas-SNP
GPR148	344561	hgsc.bcm.edu	hg19	2	131486815	131486815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	GPR148	NM_207364	exon1	c.G91A	p.A31T	CCCCAAGCAGCCA	.	114.0	34.0	91.0	0.0	.	54	.	.	Atlas-SNP
FMNL2	114793	hgsc.bcm.edu	hg19	2	153476054	153476054	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	FMNL2	NM_052905	exon15	c.A1659G	p.P553P	TATGCCACCGCCG	.	50.0	10.0	20.0	0.0	.	75	.	.	Atlas-SNP
ALPP	250	hgsc.bcm.edu	hg19	2	233243546	233243546	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	ALPP	NM_001632	exon1	c.C34T	p.L12L	CTGCTGCTGCTGG	.	81.0	33.0	71.0	0.0	.	53	.	.	Atlas-SNP
ACOX2	8309	hgsc.bcm.edu	hg19	3	58510285	58510285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	ACOX2	NM_003500	exon11	c.C1394T	p.T465M	TGTGGCGTGGAGC	.	79.0	26.0	72.0	0.0	.	53	.	.	Atlas-SNP
VEPH1	79674	hgsc.bcm.edu	hg19	3	156983419	156983419	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	VEPH1	NM_001167912	exon13	c.G2161T	p.G721X	GTTTTCCTTCTAT	.	134.0	53.0	93.0	0.0	.	129	.	.	Atlas-SNP
ATP11B	23200	hgsc.bcm.edu	hg19	3	182597383	182597383	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	ATP11B	NM_014616	exon20	c.C2352T	p.C784C	AGTTTGCAGAAAT	.	360.0	147.0	281.0	1.0	.	115	.	.	Atlas-SNP
FAM157A	728262	hgsc.bcm.edu	hg19	3	197880167	197880167	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	FAM157A	NM_001145248	exon2	c.G246A	p.Q82Q	GCAGCAGCAGCAA	.	422.0	22.0	386.0	0.0	.	4	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	hg19	4	55602719	55602719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	KIT,colon,carcinoma,0,1	KIT	NM_000222	exon18	c.C2540T	p.T847M	TATACACGTTTGA	.	65.0	46.0	119.0	0.0	.	7396	.	.	Atlas-SNP
COQ2	27235	hgsc.bcm.edu	hg19	4	84191021	84191021	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	COQ2	NM_015697	exon5	c.G904T	p.A302S	GATGGGCATAAAT	.	214.0	159.0	441.0	2.0	.	22	.	.	Atlas-SNP
AFF1	4299	hgsc.bcm.edu	hg19	4	88035865	88035865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	AFF1	NM_001166693	exon12	c.G1880T	p.S627I	GGACCAGCCTGCA	.	163.0	124.0	215.0	0.0	.	102	.	.	Atlas-SNP
TLL1	7092	hgsc.bcm.edu	hg19	4	166986934	166986934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	TLL1	NM_012464	exon16	c.T2107C	p.S703P	ATCACATCCCAGT	.	100.0	80.0	173.0	0.0	.	194	.	.	Atlas-SNP
TRIP13	9319	hgsc.bcm.edu	hg19	5	908114	908114	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	TRIP13	NM_004237	exon8	c.G684A	p.L228L	CAAGCTGGTAACC	.	146.0	29.0	93.0	0.0	.	41	.	.	Atlas-SNP
KIAA0947	23379	hgsc.bcm.edu	hg19	5	5462390	5462390	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	KIAA0947	NM_015325	exon13	c.G2943A	p.G981G	AGATGGGCAGAAG	.	103.0	52.0	104.0	0.0	.	301	.	.	Atlas-SNP
ZFR	51663	hgsc.bcm.edu	hg19	5	32417841	32417841	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	ZFR	NM_016107	exon4	c.A477G	p.Q159Q	GTAGTATTGCTTA	.	68.0	23.0	68.0	0.0	.	98	.	.	Atlas-SNP
ADAMTS6	11174	hgsc.bcm.edu	hg19	5	64521991	64521991	+	Silent	SNP	A	A	C	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	ADAMTS6	NM_197941	exon16	c.T1989G	p.T663T	ACGTTCAGTGTAG	.	192.0	87.0	175.0	0.0	.	174	.	.	Atlas-SNP
OCLN	100506658	hgsc.bcm.edu	hg19	5	68849479	68849479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	OCLN	NM_001205254	exon9	c.A1550G	p.Y517C	GAGACTATGATAG	.	1059.0	387.0	1057.0	0.0	.	22	.	.	Atlas-SNP
PAPD4	167153	hgsc.bcm.edu	hg19	5	78938692	78938692	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	PAPD4	NM_173797	exon8	c.A710G	p.H237R	CACGGCATATACT	.	86.0	28.0	92.0	0.0	.	51	.	.	Atlas-SNP
CMYA5	202333	hgsc.bcm.edu	hg19	5	79031059	79031059	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	CMYA5	NM_153610	exon2	c.A6471G	p.T2157T	ACCTACACAACCA	.	305.0	119.0	266.0	1.0	.	643	.	.	Atlas-SNP
RASA1	5921	hgsc.bcm.edu	hg19	5	86659193	86659193	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	RASA1	NM_002890	exon11	c.T1482G	p.Y494X	TTTATATTTTATC	.	101.0	35.0	88.0	0.0	.	213	.	.	Atlas-SNP
GALNT10	55568	hgsc.bcm.edu	hg19	5	153709146	153709146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	GALNT10,NS,carcinoma,+1,2	GALNT10	NM_198321	exon4	c.G416A	p.R139H	GCAAGCGCTACCT	.	88.0	20.0	70.0	0.0	.	70	.	.	Atlas-SNP
CDYL	9425	hgsc.bcm.edu	hg19	6	4892318	4892318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	CDYL	NM_004824	exon2	c.C396A	p.N132K	GAAGAACATGGAC	.	157.0	68.0	122.0	0.0	.	74	.	.	Atlas-SNP
RGL2	5863	hgsc.bcm.edu	hg19	6	33266246	33266246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	RGL2	NM_004761	exon2	c.G142A	p.E48K	CTTCCTCCTCCTC	.	430.0	200.0	445.0	1.0	.	58	.	.	Atlas-SNP
KLHL7	55975	hgsc.bcm.edu	hg19	7	23212604	23212604	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	KLHL7	NM_001031710	exon10	c.A1417C	p.N473H	AGGAAGAATCATG	.	209.0	89.0	202.0	0.0	.	102	.	.	Atlas-SNP
RFC2	5982	hgsc.bcm.edu	hg19	7	73654297	73654297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	RFC2	NM_181471	exon7	c.A664G	p.I222V	TGAAGATGATGGC	.	112.0	38.0	121.0	0.0	.	27	.	.	Atlas-SNP
CACNA2D1	781	hgsc.bcm.edu	hg19	7	81642821	81642821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	CACNA2D1	NM_000722	exon14	c.T1228C	p.Y410H	CATAATAATAACC	.	748.0	319.0	650.0	0.0	.	191	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82784467	82784467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	PCLO	NM_014510	exon2	c.C1490T	p.A497V	GGCTTTGCTGAGC	.	32.0	9.0	23.0	0.0	.	1506	.	.	Atlas-SNP
DOCK4	9732	hgsc.bcm.edu	hg19	7	111555875	111555875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	DOCK4_ENST00000437633,NS,carcinoma,0,2	DOCK4	NM_014705	exon13	c.C1151A	p.S384Y	GTTATGGATACTC	.	119.0	49.0	110.0	0.0	.	365	.	.	Atlas-SNP
CTTNBP2	83992	hgsc.bcm.edu	hg19	7	117431229	117431229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	CTTNBP2	NM_033427	exon4	c.C2021T	p.S674L	CAGGATGAGGCAC	.	196.0	85.0	145.0	0.0	.	200	.	.	Atlas-SNP
GPR124	25960	hgsc.bcm.edu	hg19	8	37699537	37699537	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	GPR124	NM_032777	exon19	c.C3681T	p.T1227T	CCCCACCGACAGC	.	20.0	18.0	15.0	0.0	.	85	.	.	Atlas-SNP
CPQ	10404	hgsc.bcm.edu	hg19	8	97797377	97797377	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	.	NM_016134	exon2	c.A252G	p.L84L	GAACCTAGAAAAA	.	316.0	98.0	192.0	0.0	.	.	.	.	Atlas-SNP
ZHX2	22882	hgsc.bcm.edu	hg19	8	123964558	123964558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	ZHX2	NM_014943	exon3	c.G808A	p.A270T	AACTCTGCCCTGG	.	196.0	48.0	103.0	0.0	.	106	.	.	Atlas-SNP
TRPM6	140803	hgsc.bcm.edu	hg19	9	77454953	77454953	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	TRPM6	NM_017662	exon5	c.A531C	p.E177D	GATGCCTTCAGTT	.	67.0	49.0	98.0	0.0	.	377	.	.	Atlas-SNP
EPB41L4B	54566	hgsc.bcm.edu	hg19	9	111962537	111962537	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	EPB41L4B	NM_019114	exon20	c.A2024T	p.K675M	GTTAACTTCCTCA	.	84.0	70.0	116.0	0.0	.	111	.	.	Atlas-SNP
GDF2	2658	hgsc.bcm.edu	hg19	10	48413997	48413997	+	Missense_Mutation	SNP	C	C	A	rs201711410	by1000genomes;alternate_allele	TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	GDF2	NM_016204	exon2	c.G871T	p.G291C	TGGAGCCGTCCTT	.	85.0	29.0	75.0	0.0	.	77	.	C|1.000;T|0.000	Atlas-SNP
CC2D2B	387707	hgsc.bcm.edu	hg19	10	97787105	97787105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	CC2D2B	NM_001159747	exon11	c.G976A	p.E326K	TCATCTGAAGGAG	.	179.0	81.0	134.0	0.0	.	46	.	.	Atlas-SNP
PNLIPRP3	119548	hgsc.bcm.edu	hg19	10	118225668	118225668	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	PNLIPRP3	NM_001011709	exon8	c.A915G	p.T305T	CTACACATCTTTT	.	92.0	44.0	81.0	0.0	.	101	.	.	Atlas-SNP
UBQLNL	143630	hgsc.bcm.edu	hg19	11	5537631	5537631	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	UBQLNL	NM_145053	exon1	c.G41C	p.S14T	CATCCACTCTGGG	.	75.0	30.0	61.0	0.0	.	74	.	.	Atlas-SNP
MMP20	9313	hgsc.bcm.edu	hg19	11	102477304	102477304	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	MMP20	NM_004771	exon6	c.G915A	p.V305V	CATTGTCACAGCG	.	165.0	31.0	167.0	0.0	.	52	.	.	Atlas-SNP
ROBO4	54538	hgsc.bcm.edu	hg19	11	124766129	124766129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	ROBO4	NM_019055	exon4	c.A644G	p.H215R	TCCCTATGTCCTG	.	47.0	4.0	49.0	0.0	.	130	.	.	Atlas-SNP
KCNC2	3747	hgsc.bcm.edu	hg19	12	75601377	75601377	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	KCNC2	NM_139137	exon2	c.G387T	p.V129V	CCCGCACACGTCT	.	526.0	229.0	435.0	1.0	.	239	.	.	Atlas-SNP
MED13L	23389	hgsc.bcm.edu	hg19	12	116675396	116675396	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	MED13L	NM_015335	exon2	c.T187A	p.C63S	GCAGACAGCGGAT	.	216.0	87.0	224.0	0.0	.	193	.	.	Atlas-SNP
UBC	7316	hgsc.bcm.edu	hg19	12	125397187	125397187	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	UBC	NM_021009	exon2	c.C1131T	p.L377L	ACCTCTGAGACGG	.	225.0	48.0	257.0	0.0	.	79	.	.	Atlas-SNP
C15orf57	90416	hgsc.bcm.edu	hg19	15	40849416	40849416	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	C15orf57	NM_001080791	exon3	c.A427T	p.S143C	ATTACCTCTCATC	.	131.0	56.0	112.0	0.0	.	20	.	.	Atlas-SNP
GOLGA6A	342096	hgsc.bcm.edu	hg19	15	74364639	74364639	+	Missense_Mutation	SNP	G	G	C	rs200350318	bycluster	TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	GOLGA6A,NS,carcinoma,0,1	GOLGA6A	NM_001038640	exon14	c.C1513G	p.Q505E	GATGTTGTCCTCC	.	32.0	7.0	31.0	2.0	.	28	.	G|0.999;C|0.001	Atlas-SNP
FURIN	5045	hgsc.bcm.edu	hg19	15	91423324	91423324	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	FURIN	NM_002569	exon13	c.A1377T	p.K459N	GCACAGAGACATC	.	110.0	45.0	76.0	0.0	.	85	.	.	Atlas-SNP
PRMT7	54496	hgsc.bcm.edu	hg19	16	68358647	68358647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	PRMT7	NM_019023	exon5	c.A194G	p.K65R	GACAGAAGGCCTT	.	108.0	78.0	173.0	0.0	.	51	.	.	Atlas-SNP
ATP2C2	9914	hgsc.bcm.edu	hg19	16	84476156	84476156	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	ATP2C2	NM_014861	exon15	c.C1352T	p.A451V	AGAACGCCGTGAT	.	56.0	38.0	92.0	0.0	.	75	.	.	Atlas-SNP
ZC3H18	124245	hgsc.bcm.edu	hg19	16	88688677	88688677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	ZC3H18	NM_144604	exon9	c.G1548T	p.K516N	GTGGAAGGACCCT	.	131.0	108.0	210.0	1.0	.	90	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578555	7578555	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	TP53_ENST00000545858,NS,carcinoma,0,58	TP53	NM_000546	exon6	c.376-1G>A	.	GGAGTACTGTAGG	.	45.0	36.0	72.0	0.0	.	33396	.	.	Atlas-SNP
SREBF1	6720	hgsc.bcm.edu	hg19	17	17719813	17719813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	SREBF1	NM_001005291	exon11	c.G2095A	p.A699T	GGGCTGCGTCTCG	.	72.0	39.0	56.0	0.0	.	47	.	.	Atlas-SNP
NARR	0	hgsc.bcm.edu	hg19	17	27044336	27044336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	.	NM_001256281	exon1	c.G391A	p.A131T	GATCCGCGTCAGC	.	79.0	46.0	52.0	0.0	.	.	.	.	Atlas-SNP
ATAD5	79915	hgsc.bcm.edu	hg19	17	29219640	29219640	+	Missense_Mutation	SNP	A	A	T	rs77256126	alternate_allele	TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	ATAD5	NM_024857	exon20	c.A4274T	p.N1425I	GCAGAAATGTACA	.	296.0	126.0	245.0	0.0	.	150	.	.	Atlas-SNP
TBX2	6909	hgsc.bcm.edu	hg19	17	59485703	59485703	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	TBX2	NM_005994	exon7	c.C1975G	p.L659V	AGCCCCCTGCCCG	.	171.0	60.0	123.0	0.0	.	30	.	.	Atlas-SNP
ABHD3	171586	hgsc.bcm.edu	hg19	18	19263881	19263881	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	ABHD3	NM_138340	exon4	c.G555A	p.L185L	ACTTACCAAGAGA	.	430.0	161.0	443.0	1.0	.	32	.	.	Atlas-SNP
SLC39A6	25800	hgsc.bcm.edu	hg19	18	33703524	33703524	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	SLC39A6	NM_012319	exon4	c.G1074T	p.L358L	GAAACTCAGGAGA	.	208.0	106.0	148.0	0.0	.	81	.	.	Atlas-SNP
ZSWIM4	65249	hgsc.bcm.edu	hg19	19	13919681	13919681	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	ZSWIM4	NM_023072	exon4	c.C744A	p.I248I	AGGAATCGAGGAC	.	145.0	65.0	136.0	0.0	.	69	.	.	Atlas-SNP
MAP1S	55201	hgsc.bcm.edu	hg19	19	17837678	17837678	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	MAP1S	NM_018174	exon5	c.C1485T	p.G495G	ACCTGGCCAGGAG	.	150.0	69.0	110.0	0.0	.	74	.	.	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	hg19	19	36214101	36214101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	MLL4	NM_014727	exon6	c.A2927G	p.Q976R	GTGTGCAGGACTG	.	71.0	29.0	64.0	0.0	.	229	.	.	Atlas-SNP
ZNF813	126017	hgsc.bcm.edu	hg19	19	53994274	53994274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	ZNF813	NM_001004301	exon4	c.G788T	p.R263I	ATCGTAGATGTCA	.	181.0	80.0	143.0	0.0	.	81	.	.	Atlas-SNP
SLC12A5	57468	hgsc.bcm.edu	hg19	20	44669254	44669254	+	Splice_Site	SNP	G	G	C	rs142641765	alternate_allele	TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	SLC12A5,NS,lymphoid_neoplasm,0,1	SLC12A5	NM_001134771	exon7	c.923+1G>C	.	CTTCCCGTGAGTG	.	76.0	31.0	52.0	0.0	.	181	.	G|1.000;A|0.000	Atlas-SNP
NHP2L1	4809	hgsc.bcm.edu	hg19	22	42071125	42071125	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	NHP2L1	NM_001003796	exon3	c.C199T	p.L67L	GGTGCAGAATGAT	.	108.0	69.0	69.0	0.0	.	13	.	.	Atlas-SNP
TLR8	51311	hgsc.bcm.edu	hg19	X	12939763	12939763	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	TLR8	NM_138636	exon2	c.A2604G	p.K868K	GGTAAAAGGCTAC	.	98.0	5.0	65.0	0.0	.	134	.	.	Atlas-SNP
IQSEC2	23096	hgsc.bcm.edu	hg19	X	53263732	53263732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	IQSEC2	NM_001111125	exon15	c.C4136T	p.P1379L	TGGGCTGGAGGGT	.	65.0	52.0	70.0	0.0	.	195	.	.	Atlas-SNP
P2RY10	27334	hgsc.bcm.edu	hg19	X	78216621	78216621	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	P2RY10	NM_198333	exon2	c.G604T	p.A202S	ACAGTTGCTGAGC	.	69.0	60.0	50.0	0.0	.	99	.	.	Atlas-SNP
GPR112	139378	hgsc.bcm.edu	hg19	X	135428111	135428111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	GPR112	NM_153834	exon6	c.C2246A	p.T749N	CCATAACCAATAT	.	252.0	231.0	234.0	0.0	.	459	.	.	Atlas-SNP
SLITRK2	84631	hgsc.bcm.edu	hg19	X	144905309	144905309	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	SLITRK2	NM_001144005	exon5	c.T1366A	p.Y456N	TTAGAGTATAATG	.	95.0	84.0	80.0	0.0	.	221	.	.	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	hg19	8	139824123	139824124	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	COL22A1	NM_152888	exon9	c.1368_1369insC	p.P456fs	.	.	211.0	13.0	114.0	0.0	.	390	.	.	Atlas-INDEL
PLCH1	23007	hgsc.bcm.edu	hg19	3	155311807	155311807	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	PLCH1	NM_001130960	exon3	c.358delA	p.I120fs	.	.	138.0	63.0	104.0	0.0	.	406	.	.	Atlas-INDEL
AWAT2	158835	hgsc.bcm.edu	hg19	X	69264286	69264286	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AAED-01A-12D-A40R-10	TCGA-DD-AAED-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c060df4-2a85-49c8-ac6e-3f11f3513b51	bf60ba6e-38fa-4254-b22a-31bf89f3a555	.	AWAT2	NM_001002254	exon2	c.113delA	p.Y38fs	.	.	256.0	211.0	221.0	0.0	.	36	.	.	Atlas-INDEL
