Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PADI4	23569	hgsc.bcm.edu	hg19	1	17668580	17668580	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	PADI4	NM_012387	exon7	c.T795G	p.I265M	GCTCATTACCCTC	.	143.0	24.0	113.0	0.0	.	70	.	.	Atlas-SNP
LRRC8D	55144	hgsc.bcm.edu	hg19	1	90400553	90400553	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	LRRC8D	NM_018103	exon3	c.C1926A	p.L642L	GGAACTCCAGAAC	.	101.0	5.0	106.0	0.0	.	78	.	.	Atlas-SNP
TDRD5	163589	hgsc.bcm.edu	hg19	1	179631411	179631411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	TDRD5	NM_001199085	exon15	c.T2495C	p.M832T	AAGAAATGCCACA	.	75.0	22.0	46.0	0.0	.	149	.	.	Atlas-SNP
TARBP1	6894	hgsc.bcm.edu	hg19	1	234541734	234541734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	TARBP1	NM_005646	exon24	c.A3904G	p.K1302E	ACACTTTACACAC	.	343.0	158.0	210.0	0.0	.	111	.	.	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	hg19	1	240374413	240374413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	FMN2,extremity,malignant_melanoma,-2,1	FMN2	NM_020066	exon6	c.T3943C	p.W1315R	CTTATTTGGGAAA	.	73.0	37.0	37.0	0.0	.	451	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21227156	21227156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	APOB	NM_000384	exon28	c.C12072A	p.F4024L	GTAGTAGAAGTTC	.	57.0	23.0	47.0	0.0	.	761	.	.	Atlas-SNP
UGP2	7360	hgsc.bcm.edu	hg19	2	64109686	64109686	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	UGP2	NM_006759	exon4	c.T342C	p.N114N	ACTCAATGGTGGT	.	156.0	67.0	98.0	0.0	.	38	.	.	Atlas-SNP
POLR1B	84172	hgsc.bcm.edu	hg19	2	113300078	113300078	+	Missense_Mutation	SNP	C	C	A	rs114489202	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	POLR1B	NM_019014	exon1	c.C7A	p.P3T	ATGGATCCTGGCA	.	204.0	63.0	135.0	0.0	.	95	.	C|0.987;T|0.013	Atlas-SNP
TUBA3E	112714	hgsc.bcm.edu	hg19	2	130951946	130951946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	TUBA3E	NM_207312	exon4	c.C469A	p.L157I	CTGAGAGCCGCTC	.	262.0	128.0	154.0	0.0	.	73	.	.	Atlas-SNP
POTEE	445582	hgsc.bcm.edu	hg19	2	132021637	132021637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	ENSG00000188219,NS,carcinoma,0,1	.	NM_001083538	exon15	c.C2609T	p.A870V	GGAATGCCCTCCC	.	135.0	45.0	121.0	0.0	.	.	.	.	Atlas-SNP
ATP2B2	491	hgsc.bcm.edu	hg19	3	10370571	10370571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	ATP2B2_ENST00000360273,NS,carcinoma,0,4	ATP2B2	NM_001001331	exon23	c.C3659T	p.T1220M	TCGGTCGTCAGGT	.	115.0	5.0	82.0	0.0	.	304	.	.	Atlas-SNP
PLCL2	23228	hgsc.bcm.edu	hg19	3	17052798	17052798	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	PLCL2	NM_015184	exon2	c.A1582T	p.S528C	CTTGCCAGCAAGT	.	151.0	56.0	79.0	0.0	.	145	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	CTNNB1,NS,carcinoma,0,1	CTNNB1	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	143.0	83.0	88.0	0.0	.	4904	.	.	Atlas-SNP
SI	6476	hgsc.bcm.edu	hg19	3	164755792	164755792	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	SI	NM_001041	exon21	c.G2322A	p.R774R	TTGTTTCCTCCAT	.	65.0	29.0	45.0	0.0	.	500	.	.	Atlas-SNP
SAMD7	344658	hgsc.bcm.edu	hg19	3	169639109	169639109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	SAMD7	NM_182610	exon4	c.C194T	p.S65F	TGTTGTCCAGTCG	.	95.0	35.0	69.0	0.0	.	69	.	.	Atlas-SNP
FAM157A	728262	hgsc.bcm.edu	hg19	3	197880164	197880164	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	FAM157A	NM_001145248	exon2	c.G243A	p.Q81Q	GCAGCAGCAGCAG	.	254.0	22.0	185.0	0.0	.	4	.	.	Atlas-SNP
MSANTD1	345222	hgsc.bcm.edu	hg19	4	3255044	3255044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	MSANTD1,NS,carcinoma,0,2	MSANTD1	NM_001042690	exon2	c.C431T	p.P144L	AACTGCCGGACAG	.	74.0	39.0	53.0	0.0	.	14	.	.	Atlas-SNP
ADH4	127	hgsc.bcm.edu	hg19	4	100060242	100060242	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	ADH4	NM_000670	exon4	c.G320C	p.S107T	AGTGGACTCAGAC	.	146.0	50.0	64.0	0.0	.	35	.	.	Atlas-SNP
INTS12	57117	hgsc.bcm.edu	hg19	4	106604433	106604433	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	INTS12	NM_020395	exon8	c.T846A	p.V282V	CGAGGAAACGCTG	.	100.0	53.0	61.0	0.0	.	35	.	.	Atlas-SNP
IRX4	50805	hgsc.bcm.edu	hg19	5	1878323	1878323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	IRX4	NM_016358	exon5	c.C1320A	p.D440E	GACCCCGTCCACC	.	83.0	49.0	60.0	0.0	.	45	.	.	Atlas-SNP
ADCY2	108	hgsc.bcm.edu	hg19	5	7727323	7727323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	ADCY2	NM_020546	exon14	c.C1820A	p.A607D	CTTGTGCCTGTCT	.	49.0	27.0	33.0	0.0	.	337	.	.	Atlas-SNP
PRDM9	56979	hgsc.bcm.edu	hg19	5	23527109	23527109	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	PRDM9	NM_020227	exon11	c.T1912G	p.C638G	TATGTCTGCAGGG	.	338.0	95.0	221.0	0.0	.	344	.	.	Atlas-SNP
KDM3B	51780	hgsc.bcm.edu	hg19	5	137762974	137762974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	KDM3B	NM_016604	exon19	c.G4599T	p.R1533S	TGTAAGGCCTGAT	.	128.0	88.0	56.0	0.0	.	177	.	.	Atlas-SNP
PCDHGA8	9708	hgsc.bcm.edu	hg19	5	140773210	140773210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	PCDHGA8	NM_014004	exon1	c.T830C	p.V277A	GAAAAGTGGCATA	.	369.0	144.0	188.0	0.0	.	146	.	.	Atlas-SNP
PCDHGA10	56106	hgsc.bcm.edu	hg19	5	140792981	140792981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	PCDHGA10	NM_032090	exon1	c.C239A	p.S80Y	TTTTCTCTCTGAA	.	242.0	58.0	84.0	0.0	.	114	.	.	Atlas-SNP
SH3RF2	153769	hgsc.bcm.edu	hg19	5	145439465	145439465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	SH3RF2	NM_152550	exon9	c.C1592T	p.P531L	GGATCCCCACTCT	.	174.0	41.0	69.0	0.0	.	58	.	.	Atlas-SNP
EBF1	1879	hgsc.bcm.edu	hg19	5	158139179	158139179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	EBF1	NM_024007	exon14	c.C1532A	p.A511D	GAGTTGGCAGCTG	.	209.0	40.0	74.0	0.0	.	110	.	.	Atlas-SNP
OR10C1	442194	hgsc.bcm.edu	hg19	6	29408581	29408581	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	OR10C1	NM_013941	exon1	c.C789T	p.A263A	TAAGGCCAGCTAC	.	71.0	28.0	39.0	0.0	.	58	.	.	Atlas-SNP
GPSM3	63940	hgsc.bcm.edu	hg19	6	32160269	32160269	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	GPSM3	NM_022107	exon5	c.G22T	p.E8X	CTTCTTCCTGGGG	.	46.0	23.0	48.0	0.0	.	9	.	.	Atlas-SNP
RXRB	6257	hgsc.bcm.edu	hg19	6	33165574	33165574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	RXRB	NM_021976	exon4	c.A785G	p.Y262C	TTCTGATAGCGGC	.	92.0	31.0	37.0	0.0	.	34	.	.	Atlas-SNP
UNC5CL	222643	hgsc.bcm.edu	hg19	6	41002766	41002766	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	UNC5CL	NM_173561	exon2	c.G48A	p.L16L	CCCCACCAGCAGT	.	65.0	21.0	37.0	0.0	.	52	.	.	Atlas-SNP
PRPH2	5961	hgsc.bcm.edu	hg19	6	42689887	42689887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	PRPH2	NM_000322	exon1	c.C186A	p.N62K	CAATGAGTTGGGC	.	96.0	47.0	75.0	0.0	.	47	.	.	Atlas-SNP
FILIP1	27145	hgsc.bcm.edu	hg19	6	76023019	76023019	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	FILIP1	NM_015687	exon5	c.G2529C	p.L843F	TTTCTTCAATCCC	.	137.0	47.0	114.0	0.0	.	173	.	.	Atlas-SNP
FBXL4	26235	hgsc.bcm.edu	hg19	6	99323549	99323549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	FBXL4	NM_012160	exon8	c.C1444T	p.R482W	GGGTCCGGAGTTT	.	92.0	11.0	62.0	0.0	.	54	.	.	Atlas-SNP
SASH1	23328	hgsc.bcm.edu	hg19	6	148855918	148855918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	SASH1	NM_015278	exon16	c.A1976G	p.Y659C	ATGGATATGAAGA	.	43.0	36.0	60.0	0.0	.	123	.	.	Atlas-SNP
LATS1	9113	hgsc.bcm.edu	hg19	6	150001298	150001298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	LATS1	NM_004690	exon5	c.A2306G	p.Y769C	GAATAATATAGAC	.	82.0	61.0	88.0	0.0	.	241	.	.	Atlas-SNP
CREB5	9586	hgsc.bcm.edu	hg19	7	28843947	28843947	+	Silent	SNP	G	G	T	rs139638068	bycluster;alternate_allele	TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	CREB5	NM_182898	exon8	c.G834T	p.P278P	GCACCCGCATCAG	.	143.0	59.0	77.0	0.0	.	115	.	G|1.000;A|0.000	Atlas-SNP
CUX1	1523	hgsc.bcm.edu	hg19	7	101845470	101845470	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	CUX1	NM_001202543	exon18	c.A2926G	p.I976V	CAGAGAATCTTCG	.	97.0	46.0	85.0	0.0	.	253	.	.	Atlas-SNP
TTC26	79989	hgsc.bcm.edu	hg19	7	138849981	138849981	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	TTC26	NM_001144920	exon9	c.895+1G>T	.	GTCAAGGTAAGAA	.	95.0	40.0	50.0	0.0	.	50	.	.	Atlas-SNP
CLCN1	1180	hgsc.bcm.edu	hg19	7	143018842	143018842	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	CLCN1	NM_000083	exon5	c.T597A	p.R199R	ACTTCGTGGGGTT	.	99.0	10.0	82.0	0.0	.	141	.	.	Atlas-SNP
GIMAP7	168537	hgsc.bcm.edu	hg19	7	150217878	150217878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	GIMAP7	NM_153236	exon2	c.A816G	p.I272M	AAATATATTTAAA	.	139.0	54.0	67.0	0.0	.	47	.	.	Atlas-SNP
R3HCC1	203069	hgsc.bcm.edu	hg19	8	23153535	23153535	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	R3HCC1	NM_001136108	exon8	c.G687A	p.R229R	CCGGCGGCTGGTG	.	113.0	38.0	163.0	0.0	.	11	.	.	Atlas-SNP
JPH1	56704	hgsc.bcm.edu	hg19	8	75157174	75157174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	JPH1	NM_020647	exon4	c.A1495G	p.R499G	CACTCCTTTTGTC	.	136.0	39.0	61.0	0.0	.	77	.	.	Atlas-SNP
DGAT1	8694	hgsc.bcm.edu	hg19	8	145541100	145541100	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	DGAT1	NM_012079	exon13	c.T990G	p.N330K	GAGGTGATTGGGG	.	63.0	31.0	25.0	0.0	.	26	.	.	Atlas-SNP
ZNF462	58499	hgsc.bcm.edu	hg19	9	109691842	109691842	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	ZNF462	NM_021224	exon3	c.C5649T	p.N1883N	GGGCAACGGCCCC	.	99.0	5.0	58.0	0.0	.	322	.	.	Atlas-SNP
CTNNAL1	8727	hgsc.bcm.edu	hg19	9	111761413	111761413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	CTNNAL1	NM_003798	exon2	c.A265G	p.I89V	TGGCTATAGCTTC	.	165.0	72.0	86.0	0.0	.	51	.	.	Atlas-SNP
SETX	23064	hgsc.bcm.edu	hg19	9	135156934	135156934	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	SETX	NM_015046	exon20	c.C6574G	p.L2192V	GAGTAAGAGTCTC	.	149.0	58.0	110.0	0.0	.	234	.	.	Atlas-SNP
GTF3C4	9329	hgsc.bcm.edu	hg19	9	135554698	135554698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	GTF3C4	NM_012204	exon2	c.G1692T	p.K564N	AAAAAAGATTGAA	.	107.0	39.0	66.0	0.0	.	53	.	.	Atlas-SNP
ARMC4	55130	hgsc.bcm.edu	hg19	10	28276331	28276331	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	ARMC4	NM_018076	exon3	c.C366A	p.A122A	TGCTTGGGCTTCC	.	96.0	36.0	66.0	0.0	.	177	.	.	Atlas-SNP
ANK3	288	hgsc.bcm.edu	hg19	10	61831548	61831548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	ANK3	NM_020987	exon37	c.T9091C	p.Y3031H	CTACATAACTCTG	.	73.0	32.0	40.0	0.0	.	703	.	.	Atlas-SNP
CPEB3	22849	hgsc.bcm.edu	hg19	10	93999597	93999597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	CPEB3	NM_014912	exon2	c.C511T	p.P171S	GCGCGGGCGCAGG	.	36.0	18.0	35.0	0.0	.	43	.	.	Atlas-SNP
DOCK1	1793	hgsc.bcm.edu	hg19	10	129179616	129179616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	DOCK1	NM_001380	exon37	c.A3728G	p.H1243R	TTCTCCATGCAAA	.	66.0	28.0	45.0	0.0	.	188	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1084794	1084794	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	MUC2	NM_002457	exon20	c.C2589T	p.Y863Y	CATTTACGGGAGT	.	111.0	47.0	61.0	0.0	.	614	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1091476	1091476	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	MUC2	NM_002457	exon29	c.A3885C	p.L1295F	AGTTTTATCAACA	.	255.0	15.0	185.0	0.0	.	614	.	.	Atlas-SNP
OR4D10	390197	hgsc.bcm.edu	hg19	11	59245374	59245374	+	Missense_Mutation	SNP	G	G	A	rs200781301	bycluster	TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	OR4D10_ENST00000530162,colon,carcinoma,0,4	OR4D10	NM_001004705	exon1	c.G472A	p.V158M	TCCATCGTGCAGA	.	108.0	15.0	64.0	0.0	.	120	.	.	Atlas-SNP
MTA2	9219	hgsc.bcm.edu	hg19	11	62367685	62367685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	MTA2	NM_004739	exon3	c.G143A	p.R48H	TCCCTGCGCCGGA	.	176.0	64.0	146.0	0.0	.	54	.	.	Atlas-SNP
TM7SF2	7108	hgsc.bcm.edu	hg19	11	64880095	64880095	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	TM7SF2	NM_003273	exon2	c.T161A	p.L54Q	CGGGGCTGGAGGT	.	77.0	24.0	71.0	0.0	.	30	.	.	Atlas-SNP
KIAA1377	57562	hgsc.bcm.edu	hg19	11	101834056	101834056	+	Missense_Mutation	SNP	A	A	G	rs138416296		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	KIAA1377	NM_020802	exon6	c.A2290G	p.K764E	TCTGCAAAAGTCC	.	145.0	7.0	104.0	0.0	.	111	.	A|1.000;G|0.000	Atlas-SNP
MMP10	4319	hgsc.bcm.edu	hg19	11	102641594	102641594	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	MMP10	NM_002425	exon10	c.A1361T	p.Q454L	TCAAACTGTGATG	.	115.0	39.0	92.0	0.0	.	44	.	.	Atlas-SNP
MMP10	4319	hgsc.bcm.edu	hg19	11	102650306	102650306	+	Silent	SNP	T	T	G	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	MMP10	NM_002425	exon2	c.A276C	p.G92G	AGGAACTCCACAC	.	135.0	56.0	79.0	0.0	.	44	.	.	Atlas-SNP
TECTA	7007	hgsc.bcm.edu	hg19	11	121016728	121016728	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	TECTA	NM_005422	exon11	c.C4008A	p.G1336G	TGGGGGCGCGGTG	.	1428.0	572.0	1014.0	2.0	.	329	.	.	Atlas-SNP
TFCP2	7024	hgsc.bcm.edu	hg19	12	51566149	51566149	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	TFCP2	NM_001173452	exon1	c.G57A	p.V19V	GTCCTGCACCAAC	.	74.0	24.0	43.0	0.0	.	49	.	.	Atlas-SNP
HOXC4	3221	hgsc.bcm.edu	hg19	12	54447994	54447994	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	HOXC4	NM_014620	exon3	c.G288T	p.S96S	ACAGTCGCTCTGC	.	100.0	49.0	62.0	0.0	.	29	.	.	Atlas-SNP
NR1H4	9971	hgsc.bcm.edu	hg19	12	100957256	100957256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	NR1H4	NM_001206993	exon9	c.G1450A	p.D484N	ATCTGGGACGTGC	.	100.0	37.0	66.0	0.0	.	145	.	.	Atlas-SNP
RCBTB2	1102	hgsc.bcm.edu	hg19	13	49086978	49086978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	RCBTB2	NM_001268	exon7	c.A403G	p.T135A	TAGTTGTCCCATT	.	57.0	33.0	65.0	0.0	.	62	.	.	Atlas-SNP
MYH6	4624	hgsc.bcm.edu	hg19	14	23868178	23868178	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	MYH6	NM_002471	exon15	c.G1650A	p.K550K	CTTGGCCTTGAAG	.	104.0	52.0	78.0	0.0	.	274	.	.	Atlas-SNP
PCNX	22990	hgsc.bcm.edu	hg19	14	71575423	71575423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	PCNX	NM_014982	exon34	c.A6404G	p.H2135R	GCCGGCATTCATC	.	64.0	49.0	78.0	0.0	.	198	.	.	Atlas-SNP
EXOC3L4	91828	hgsc.bcm.edu	hg19	14	103570678	103570678	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	EXOC3L4	NM_001077594	exon4	c.G1236A	p.E412E	CCCCGAGGTGCTG	.	58.0	40.0	82.0	0.0	.	35	.	.	Atlas-SNP
CKB	1152	hgsc.bcm.edu	hg19	14	103988750	103988750	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	CKB	NM_001823	exon2	c.C81T	p.N27N	GTGGTTGTTGTGG	.	39.0	32.0	52.0	0.0	.	9	.	.	Atlas-SNP
TGM5	9333	hgsc.bcm.edu	hg19	15	43527750	43527750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	TGM5	NM_201631	exon10	c.G1631A	p.S544N	TGGGCACTCAGGT	.	96.0	41.0	68.0	0.0	.	88	.	.	Atlas-SNP
PYGO1	26108	hgsc.bcm.edu	hg19	15	55881035	55881035	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	PYGO1	NM_015617	exon1	c.T16A	p.S6T	CTGGAGAGTTCTC	.	54.0	26.0	46.0	0.0	.	56	.	.	Atlas-SNP
SLX4	84464	hgsc.bcm.edu	hg19	16	3633142	3633142	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	SLX4	NM_032444	exon14	c.G5109A	p.V1703V	GGTGGCCACGGAT	.	86.0	30.0	75.0	0.0	.	173	.	.	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	hg19	16	72821621	72821621	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	ZFHX3	NM_006885	exon10	c.C10554T	p.G3518G	GCCACCGCCGCCG	.	8.0	4.0	2.0	0.0	.	404	.	.	Atlas-SNP
FOXC2	2303	hgsc.bcm.edu	hg19	16	86602407	86602407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	FOXC2	NM_005251	exon1	c.G1466T	p.R489L	TCTATCGCCACGC	.	393.0	160.0	239.0	0.0	.	46	.	.	Atlas-SNP
SLFN11	91607	hgsc.bcm.edu	hg19	17	33680410	33680410	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	SLFN11,NS,carcinoma,0,1	SLFN11	NM_152270	exon4	c.G1867T	p.E623X	GTGCCTCACAGTG	.	598.0	276.0	328.0	0.0	.	112	.	.	Atlas-SNP
KRT10	3858	hgsc.bcm.edu	hg19	17	38975315	38975315	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	KRT10	NM_000421	exon7	c.A1472C	p.H491P	CCGCCGTGGCCGC	.	85.0	18.0	17.0	0.0	.	56	.	.	Atlas-SNP
KRT10	3858	hgsc.bcm.edu	hg19	17	38975316	38975316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	KRT10	NM_000421	exon7	c.C1471T	p.H491Y	CGCCGTGGCCGCC	.	85.0	18.0	16.0	0.0	.	56	.	.	Atlas-SNP
KRT10	3858	hgsc.bcm.edu	hg19	17	38975317	38975317	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	KRT10	NM_000421	exon7	c.C1470T	p.G490G	GCCGTGGCCGCCG	.	88.0	20.0	16.0	0.0	.	56	.	.	Atlas-SNP
KRT10	3858	hgsc.bcm.edu	hg19	17	38975319	38975319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	KRT10	NM_000421	exon7	c.G1468A	p.G490S	CGTGGCCGCCGCC	.	90.0	19.0	14.0	0.0	.	56	.	.	Atlas-SNP
FZD2	2535	hgsc.bcm.edu	hg19	17	42636226	42636226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	FZD2	NM_001466	exon1	c.G1170T	p.M390I	GGCCATGGGCCAG	.	67.0	16.0	25.0	0.0	.	81	.	.	Atlas-SNP
QRICH2	84074	hgsc.bcm.edu	hg19	17	74288391	74288391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	QRICH2	NM_032134	exon4	c.C1919T	p.A640V	TGAACTGCACCAG	.	113.0	30.0	89.0	0.0	.	143	.	.	Atlas-SNP
QRICH2	84074	hgsc.bcm.edu	hg19	17	74288392	74288392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	QRICH2	NM_032134	exon4	c.G1918A	p.A640T	GAACTGCACCAGG	.	115.0	30.0	87.0	0.0	.	143	.	.	Atlas-SNP
COLEC12	81035	hgsc.bcm.edu	hg19	18	347058	347058	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	COLEC12,right_upper_lobe,carcinoma,0,1	COLEC12	NM_130386	exon5	c.C564A	p.L188L	GCCCTGGAGCACG	.	57.0	25.0	42.0	0.0	.	121	.	.	Atlas-SNP
MAPK4	5596	hgsc.bcm.edu	hg19	18	48190380	48190380	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	MAPK4	NM_002747	exon2	c.G52C	p.G18R	CTCGGTGGGCGCT	.	71.0	28.0	47.0	0.0	.	75	.	.	Atlas-SNP
FZR1	51343	hgsc.bcm.edu	hg19	19	3534791	3534791	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	FZR1	NM_016263	exon14	c.1441-2A>G	.	GTCTGCAGGAGTC	.	30.0	20.0	36.0	0.0	.	42	.	.	Atlas-SNP
ZNF101	94039	hgsc.bcm.edu	hg19	19	19790278	19790278	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	ZNF101	NM_033204	exon4	c.A480G	p.T160T	GCGCACAGTAACA	.	105.0	49.0	76.0	0.0	.	43	.	.	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	hg19	19	22941279	22941279	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	ZNF99,NS,carcinoma,0,1	ZNF99	NM_001080409	exon4	c.G1432C	p.E478Q	GTTTCTCTCCAGT	.	73.0	3.0	44.0	0.0	.	273	.	.	Atlas-SNP
FOSB	2354	hgsc.bcm.edu	hg19	19	45974560	45974560	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	FOSB	NM_006732	exon3	c.555+1G>T	.	CAGGCGGTGAGGA	.	70.0	23.0	33.0	0.0	.	29	.	.	Atlas-SNP
PIH1D1	55011	hgsc.bcm.edu	hg19	19	49951314	49951314	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	PIH1D1	NM_017916	exon4	c.C343G	p.Q115E	ATCCCTGGCCTTC	.	92.0	31.0	73.0	0.0	.	23	.	.	Atlas-SNP
ZNF83	55769	hgsc.bcm.edu	hg19	19	53116865	53116865	+	Missense_Mutation	SNP	T	T	C	rs141749555		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	ZNF83	NM_018300	exon3	c.A953G	p.K318R	TTACATTTGTAAG	.	108.0	10.0	68.0	0.0	.	73	.	.	Atlas-SNP
TPTE	7179	hgsc.bcm.edu	hg19	21	10906970	10906970	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	TPTE	NM_199261	exon24	c.T1591A	p.F531I	CGGCAAAATCTGA	.	204.0	12.0	154.0	0.0	.	513	.	.	Atlas-SNP
PDHA1	5160	hgsc.bcm.edu	hg19	X	19369497	19369497	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	PDHA1	NM_001173454	exon5	c.C504T	p.S168S	CCTTTCCGTCCGA	.	266.0	88.0	174.0	0.0	.	85	.	.	Atlas-SNP
FAM47A	158724	hgsc.bcm.edu	hg19	X	34149803	34149803	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	FAM47A	NM_203408	exon1	c.A593C	p.H198P	AGGAGATGGGACA	.	80.0	4.0	42.0	0.0	.	249	.	.	Atlas-SNP
TBX22	50945	hgsc.bcm.edu	hg19	X	79277884	79277884	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	TBX22	NM_016954	exon1	c.A116G	p.K39R	AGAAAAAGGGCGG	.	114.0	5.0	71.0	0.0	.	118	.	.	Atlas-SNP
SMARCA1	6594	hgsc.bcm.edu	hg19	X	128630827	128630827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	SMARCA1	NM_139035	exon12	c.G1526A	p.S509N	ATCTGGCTGAAAA	.	152.0	118.0	118.0	0.0	.	126	.	.	Atlas-SNP
PRELID1	27166	hgsc.bcm.edu	hg19	5	176733526	176733534	+	In_Frame_Del	DEL	CAAGGCGGC	CAAGGCGGC	-	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	CAAGGCGGC	CAAGGCGGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	PRELID1	NM_013237	exon5	c.614_622del	p.205_208del	.	.	131.0	21.0	85.0	0.0	.	10	.	.	Atlas-INDEL
ZFP112	7771	hgsc.bcm.edu	hg19	19	44833582	44833582	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	ZFP112	NM_001083335	exon5	c.747delG	p.E249fs	.	.	101.0	40.0	70.0	0.0	.	219	.	.	Atlas-INDEL
NFIX	4784	hgsc.bcm.edu	hg19	19	13192654	13192654	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	NFIX	NM_001271043	exon8	c.1262delG	p.G421fs	.	.	58.0	31.0	60.0	0.0	.	61	.	.	Atlas-INDEL
TCERG1	10915	hgsc.bcm.edu	hg19	5	145858215	145858215	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AAEE-01A-11D-A40R-10	TCGA-DD-AAEE-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80030570-7419-492e-92fc-246a27b5b673	bf19b000-ebe1-4b9b-9827-d946d815d0b4	.	TCERG1	NM_006706	exon10	c.1760delT	p.L587fs	.	.	176.0	34.0	62.0	0.0	.	148	.	.	Atlas-INDEL
