Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
KAZN	23254	hgsc.bcm.edu	hg19	1	15382644	15382644	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	KAZN	NM_015209	exon5	c.A784T	p.M262L	CTCGCCATGCCGG	.	169.0	61.0	189.0	0.0	.	57	.	.	Atlas-SNP
AHDC1	27245	hgsc.bcm.edu	hg19	1	27876698	27876698	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	AHDC1	NM_001029882	exon6	c.G1929A	p.P643P	CGACTCCGGCTCA	.	77.0	30.0	70.0	0.0	.	98	.	.	Atlas-SNP
PPT1	5538	hgsc.bcm.edu	hg19	1	40562825	40562825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	PPT1	NM_000310	exon1	c.C86A	p.P29Q	GCCGGCGGGTCCA	.	436.0	138.0	411.0	1.0	.	18	.	.	Atlas-SNP
LRP8	7804	hgsc.bcm.edu	hg19	1	53716470	53716470	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	LRP8	NM_004631	exon17	c.C2568A	p.T856T	GCTTTTGGTGTTC	.	65.0	22.0	59.0	0.0	.	58	.	.	Atlas-SNP
ASB17	127247	hgsc.bcm.edu	hg19	1	76397715	76397715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	ASB17,colon,carcinoma,0,1	ASB17	NM_080868	exon1	c.G262T	p.D88Y	TGAAGTCGAGGTT	.	192.0	65.0	184.0	0.0	.	53	.	.	Atlas-SNP
MCOLN2	255231	hgsc.bcm.edu	hg19	1	85406668	85406668	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	MCOLN2	NM_153259	exon8	c.A854T	p.K285I	GCATTTTTCTGAG	.	93.0	31.0	122.0	0.0	.	60	.	.	Atlas-SNP
MCOLN2	255231	hgsc.bcm.edu	hg19	1	85422189	85422189	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	MCOLN2	NM_153259	exon4	c.T490A	p.C164S	GCTTACAGACTTT	.	144.0	6.0	133.0	0.0	.	60	.	.	Atlas-SNP
PRRC2C	23215	hgsc.bcm.edu	hg19	1	171484941	171484941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	.	NM_015172	exon5	c.A463G	p.K155E	GAAAAAAAAGAAA	.	587.0	218.0	559.0	0.0	.	.	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186088326	186088326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	HMCN1,NS,carcinoma,+1,1	HMCN1	NM_031935	exon78	c.C11852A	p.A3951E	TAGGAGCAATTGA	.	161.0	57.0	140.0	0.0	.	797	.	.	Atlas-SNP
USP34	9736	hgsc.bcm.edu	hg19	2	61632843	61632843	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	USP34	NM_014709	exon3	c.G552A	p.E184E	ACATACCTCAATA	.	300.0	106.0	316.0	1.0	.	334	.	.	Atlas-SNP
ARHGAP25	9938	hgsc.bcm.edu	hg19	2	69014971	69014971	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	ARHGAP25	NM_001007231	exon4	c.350-1G>A	.	CCTCCAGCCTCAT	.	77.0	24.0	84.0	0.0	.	175	.	.	Atlas-SNP
LRRTM1	347730	hgsc.bcm.edu	hg19	2	80529433	80529433	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	LRRTM1	NM_178839	exon2	c.C1512G	p.I504M	CTCGTTGATGATC	.	75.0	28.0	65.0	0.0	.	251	.	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	84838966	84838966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	DNAH6	NM_001370	exon22	c.G3463A	p.A1155T	CGAGCCGCTACTC	.	506.0	166.0	459.0	0.0	.	194	.	.	Atlas-SNP
CHST10	9486	hgsc.bcm.edu	hg19	2	101023123	101023123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	CHST10	NM_004854	exon3	c.G15T	p.W5C	CAGAAGCCACTGG	.	119.0	30.0	112.0	0.0	.	42	.	.	Atlas-SNP
GCC2	9648	hgsc.bcm.edu	hg19	2	109087121	109087121	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	GCC2	NM_181453	exon6	c.T1336A	p.S446T	TTTTTGTCAGATT	.	446.0	158.0	472.0	1.0	.	129	.	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152581406	152581406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	NEB	NM_004543	exon7	c.G472A	p.E158K	CATGTTCAATATC	.	57.0	20.0	68.0	0.0	.	1697	.	.	Atlas-SNP
SLC4A10	57282	hgsc.bcm.edu	hg19	2	162738921	162738921	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	SLC4A10	NM_001178015	exon10	c.T1161A	p.I387I	TGAGATTGGCAGA	.	316.0	109.0	347.0	0.0	.	309	.	.	Atlas-SNP
NEU4	129807	hgsc.bcm.edu	hg19	2	242758032	242758032	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	NEU4	NM_001167599	exon4	c.G1152A	p.P384P	TGCCCCGCCCCAG	.	78.0	26.0	72.0	0.0	.	39	.	.	Atlas-SNP
ZNF589	51385	hgsc.bcm.edu	hg19	3	48310031	48310031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	ZNF589	NM_016089	exon4	c.G850T	p.G284C	GGGCGAGGCTTTA	.	151.0	57.0	151.0	0.0	.	20	.	.	Atlas-SNP
ZNF589	51385	hgsc.bcm.edu	hg19	3	48310032	48310032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	ZNF589	NM_016089	exon4	c.G851T	p.G284V	GGCGAGGCTTTAT	.	151.0	56.0	148.0	0.0	.	20	.	.	Atlas-SNP
DNAH12	201625	hgsc.bcm.edu	hg19	3	57493370	57493370	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	DNAH12	NM_198564	exon8	c.G897A	p.Q299Q	ATGTACCTGATTT	.	62.0	25.0	59.0	0.0	.	182	.	.	Atlas-SNP
BOC	91653	hgsc.bcm.edu	hg19	3	112997029	112997029	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	BOC	NM_033254	exon10	c.A1627T	p.S543C	CCCGGGAGCTTGT	.	136.0	55.0	123.0	0.0	.	139	.	.	Atlas-SNP
KIAA2018	205717	hgsc.bcm.edu	hg19	3	113380094	113380094	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	KIAA2018	NM_001009899	exon7	c.A435T	p.K145N	AATTTTTTTTTGA	.	215.0	70.0	186.0	0.0	.	180	.	.	Atlas-SNP
CLSTN2	64084	hgsc.bcm.edu	hg19	3	140123468	140123468	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	CLSTN2	NM_022131	exon4	c.A497T	p.K166M	CCTACAAGGCTGT	.	181.0	72.0	199.0	0.0	.	190	.	.	Atlas-SNP
ATR	545	hgsc.bcm.edu	hg19	3	142215316	142215316	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	ATR	NM_001184	exon34	c.A5785T	p.R1929W	CTACCCTGGCACT	.	57.0	24.0	70.0	0.0	.	285	.	.	Atlas-SNP
SLC2A2	6514	hgsc.bcm.edu	hg19	3	170732355	170732355	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	SLC2A2	NM_000340	exon3	c.C274G	p.L92V	TGATTAGTTGAGC	.	144.0	49.0	145.0	0.0	.	71	.	.	Atlas-SNP
TAPT1	202018	hgsc.bcm.edu	hg19	4	16168391	16168391	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	TAPT1	NM_153365	exon13	c.A1339T	p.S447C	CGATGCTATTAAG	.	95.0	53.0	99.0	0.0	.	31	.	.	Atlas-SNP
PYURF	100996939	hgsc.bcm.edu	hg19	4	89444729	89444729	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	.	NM_032906	exon1	c.G123A	p.K41K	AGTCTTCTTGCCC	.	153.0	29.0	182.0	0.0	.	.	.	.	Atlas-SNP
INTU	27152	hgsc.bcm.edu	hg19	4	128564999	128564999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	INTU,NS,carcinoma,0,1	INTU	NM_015693	exon2	c.G470A	p.R157Q	AACAGCGATACAA	.	464.0	172.0	494.0	0.0	.	92	.	.	Atlas-SNP
HELT	391723	hgsc.bcm.edu	hg19	4	185940790	185940790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	HELT	NM_001029887	exon3	c.G277A	p.E93K	CCTCAGGAGGCTC	.	158.0	51.0	149.0	0.0	.	34	.	.	Atlas-SNP
PJA2	9867	hgsc.bcm.edu	hg19	5	108679977	108679977	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	PJA2	NM_014819	exon9	c.A1915T	p.S639C	ACTCACTGCAACA	.	431.0	156.0	408.0	1.0	.	53	.	.	Atlas-SNP
PCDHB13	56123	hgsc.bcm.edu	hg19	5	140595753	140595753	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	PCDHB13	NM_018933	exon1	c.C2058T	p.L686L	CTTGCTCACCGTC	.	96.0	31.0	112.0	0.0	.	142	.	.	Atlas-SNP
GABRG2	2566	hgsc.bcm.edu	hg19	5	161495110	161495110	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	GABRG2	NM_198904	exon1	c.T105C	p.P35P	CTACCCTGGGTAA	.	98.0	41.0	84.0	0.0	.	142	.	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	hg19	5	169138990	169138990	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	DOCK2,NS,carcinoma,0,2	DOCK2	NM_004946	exon16	c.C1534T	p.R512X	ATGTTTCGACATC	.	96.0	33.0	89.0	0.0	.	389	.	.	Atlas-SNP
PHACTR1	221692	hgsc.bcm.edu	hg19	6	13286433	13286433	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	PHACTR1	NM_030948	exon14	c.A1706T	p.E569V	TTCATGAATTGAG	.	143.0	32.0	114.0	0.0	.	94	.	.	Atlas-SNP
SYNGAP1	8831	hgsc.bcm.edu	hg19	6	33410881	33410881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	SYNGAP1	NM_006772	exon15	c.C2552T	p.P851L	ATGGGCCTGGTGG	.	97.0	44.0	123.0	0.0	.	202	.	.	Atlas-SNP
FGD2	221472	hgsc.bcm.edu	hg19	6	36993582	36993582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	FGD2	NM_173558	exon14	c.G1473T	p.R491S	TGCCAGGTGCTCC	.	90.0	32.0	109.0	0.0	.	65	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	66063431	66063431	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	EYS	NM_001142801	exon9	c.A1379C	p.Y460S	CCACAGTAGCAGA	.	328.0	41.0	324.0	0.0	.	527	.	.	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	hg19	7	47976458	47976458	+	Missense_Mutation	SNP	T	T	A	rs145116707	alternate_allele	TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	PKD1L1	NM_138295	exon4	c.A383T	p.D128V	CTGTTATCACAAT	.	90.0	37.0	87.0	0.0	.	328	.	T|1.000;C|0.000	Atlas-SNP
C7orf72	100130988	hgsc.bcm.edu	hg19	7	50169362	50169362	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	C7orf72	NM_001161834	exon3	c.A701T	p.D234V	CAAAGGACTCATT	.	331.0	118.0	329.0	0.0	.	26	.	.	Atlas-SNP
ZNF282	8427	hgsc.bcm.edu	hg19	7	148895458	148895458	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	ZNF282	NM_003575	exon2	c.A199C	p.M67L	CGGCCAATGCCTT	.	162.0	44.0	99.0	0.0	.	42	.	.	Atlas-SNP
SLCO5A1	81796	hgsc.bcm.edu	hg19	8	70594495	70594495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	SLCO5A1	NM_030958	exon7	c.T1706C	p.V569A	CCACAGACTGGCT	.	281.0	13.0	138.0	0.0	.	142	.	.	Atlas-SNP
MTSS1	9788	hgsc.bcm.edu	hg19	8	125565918	125565918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	MTSS1	NM_014751	exon14	c.A1583G	p.Y528C	GAGAAATAATCAT	.	190.0	44.0	87.0	0.0	.	79	.	.	Atlas-SNP
PLIN2	123	hgsc.bcm.edu	hg19	9	19119797	19119797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	PLIN2	NM_001122	exon6	c.C628A	p.L210M	GAACCAGATCAAA	.	91.0	30.0	105.0	0.0	.	41	.	.	Atlas-SNP
IFNA16	3449	hgsc.bcm.edu	hg19	9	21217149	21217149	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	IFNA16	NM_002173	exon1	c.C156T	p.C52C	CTTCAGGCAGGAG	.	205.0	78.0	194.0	0.0	.	27	.	.	Atlas-SNP
IFNA2	3440	hgsc.bcm.edu	hg19	9	21385205	21385205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	IFNA2	NM_000605	exon1	c.G124T	p.A42S	TCTGTGCCAGGAG	.	103.0	40.0	122.0	0.0	.	32	.	.	Atlas-SNP
CDC14B	8555	hgsc.bcm.edu	hg19	9	99296248	99296248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	CDC14B	NM_033331	exon9	c.T907C	p.C303R	TTTCACAGATATC	.	236.0	77.0	265.0	0.0	.	64	.	.	Atlas-SNP
AKNA	80709	hgsc.bcm.edu	hg19	9	117120428	117120428	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	AKNA	NM_030767	exon12	c.G2512C	p.V838L	TAGATACCATCTT	.	76.0	32.0	82.0	0.0	.	119	.	.	Atlas-SNP
NOTCH1	4851	hgsc.bcm.edu	hg19	9	139393656	139393656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	NOTCH1	NM_017617	exon32	c.C5990T	p.T1997M	AGTGGCGTCGTGC	.	78.0	31.0	67.0	0.0	.	1980	.	.	Atlas-SNP
LARP4B	23185	hgsc.bcm.edu	hg19	10	875345	875345	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	LARP4B	NM_015155	exon11	c.A1105T	p.S369C	GATAGCTGTGCGT	.	106.0	51.0	122.0	0.0	.	110	.	.	Atlas-SNP
ANK3	288	hgsc.bcm.edu	hg19	10	61832432	61832432	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	ANK3	NM_020987	exon37	c.A8207T	p.E2736V	CTGTCTTCTTGAG	.	135.0	33.0	107.0	0.0	.	703	.	.	Atlas-SNP
TECTB	6975	hgsc.bcm.edu	hg19	10	114046125	114046125	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	TECTB	NM_058222	exon4	c.C459T	p.S153S	TGAGAGCCAACTG	.	81.0	39.0	129.0	0.0	.	35	.	.	Atlas-SNP
MKI67	4288	hgsc.bcm.edu	hg19	10	129905646	129905646	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	MKI67	NM_002417	exon13	c.C4458G	p.H1486Q	TTTCTCGTGAGTC	.	138.0	46.0	159.0	0.0	.	363	.	.	Atlas-SNP
TUBGCP2	10844	hgsc.bcm.edu	hg19	10	135098648	135098648	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	TUBGCP2	NM_001256617	exon14	c.C2049T	p.L683L	GCTGCAGAGCTGC	.	56.0	14.0	64.0	0.0	.	79	.	.	Atlas-SNP
SYT8	90019	hgsc.bcm.edu	hg19	11	1857147	1857147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	SYT8	NM_138567	exon4	c.G332A	p.S111N	AGTCCAGCCCGGG	.	108.0	39.0	130.0	0.0	.	29	.	.	Atlas-SNP
RRM1	6240	hgsc.bcm.edu	hg19	11	4141136	4141136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	RRM1	NM_001033	exon9	c.A854G	p.Y285C	CTCGATATGTGGA	.	95.0	22.0	121.0	0.0	.	31	.	.	Atlas-SNP
OR56A3	390083	hgsc.bcm.edu	hg19	11	5968733	5968733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	OR56A3	NM_001003443	exon1	c.A157G	p.I53V	ATGACCATCTGGC	.	123.0	39.0	145.0	0.0	.	81	.	.	Atlas-SNP
CTNND1	1500	hgsc.bcm.edu	hg19	11	57575697	57575697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	CTNND1_ENST00000399050,NS,carcinoma,0,2	CTNND1	NM_001085458	exon13	c.G2024A	p.S675N	AGGAGAGCAAGAC	.	92.0	40.0	89.0	0.0	.	203	.	.	Atlas-SNP
CTSW	1521	hgsc.bcm.edu	hg19	11	65650839	65650839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	CTSW	NM_001335	exon9	c.C964T	p.H322Y	CCTCCACACCCCA	.	88.0	25.0	106.0	0.0	.	18	.	.	Atlas-SNP
ATM	472	hgsc.bcm.edu	hg19	11	108206607	108206607	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	ATM	NM_000051	exon56	c.A8187T	p.Q2729H	CATGCAACAGGTC	.	91.0	51.0	106.0	0.0	.	1657	.	.	Atlas-SNP
USP28	57646	hgsc.bcm.edu	hg19	11	113683133	113683133	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	USP28	NM_020886	exon16	c.T1837A	p.W613R	TGAGCCAGCTCTG	.	81.0	21.0	79.0	0.0	.	135	.	.	Atlas-SNP
CDON	50937	hgsc.bcm.edu	hg19	11	125848206	125848206	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	CDON	NM_016952	exon18	c.A3349T	p.N1117Y	TATTGTTGTTTCG	.	92.0	23.0	96.0	0.0	.	137	.	.	Atlas-SNP
ARHGAP32	9743	hgsc.bcm.edu	hg19	11	128843038	128843038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	ARHGAP32	NM_001142685	exon21	c.C3321A	p.F1107L	GAGGTGGAACTGC	.	134.0	52.0	152.0	0.0	.	307	.	.	Atlas-SNP
PDE3A	5139	hgsc.bcm.edu	hg19	12	20806880	20806880	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	PDE3A,NS,carcinoma,0,1	PDE3A	NM_000921	exon15	c.2926-1G>A	.	TTTCTAGGGTGAT	.	63.0	30.0	95.0	0.0	.	184	.	.	Atlas-SNP
FGD4	121512	hgsc.bcm.edu	hg19	12	32777980	32777980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	FGD4	NM_139241	exon13	c.A1613G	p.N538S	AGGATAATGACAT	.	245.0	98.0	263.0	1.0	.	86	.	.	Atlas-SNP
ARID2	196528	hgsc.bcm.edu	hg19	12	46230722	46230722	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	ARID2	NM_152641	exon8	c.T971G	p.F324C	GTCATTTTATTTC	.	117.0	8.0	121.0	0.0	.	311	.	.	Atlas-SNP
COL2A1	1280	hgsc.bcm.edu	hg19	12	48378844	48378844	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	COL2A1	NM_001844	exon27	c.T1767A	p.P589P	ACCTGGAGGTCCA	.	182.0	44.0	174.0	0.0	.	368	.	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49446022	49446022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	MLL2	NM_003482	exon10	c.G1444A	p.A482T	GCAATGCCTCAGG	.	154.0	51.0	139.0	0.0	.	1173	.	.	Atlas-SNP
ZFC3H1	196441	hgsc.bcm.edu	hg19	12	72050734	72050734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	ZFC3H1	NM_144982	exon2	c.C946T	p.R316C	TCAAACGGTTCTT	.	127.0	61.0	116.0	0.0	.	172	.	.	Atlas-SNP
CCDC169-SOHLH2	100526761	hgsc.bcm.edu	hg19	13	36747903	36747903	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	.	NM_001198910	exon14	c.A1157T	p.Q386L	AGGAATTGGAGCC	.	88.0	32.0	96.0	0.0	.	.	.	.	Atlas-SNP
AKAP11	11215	hgsc.bcm.edu	hg19	13	42876689	42876689	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	AKAP11	NM_016248	exon8	c.A3807T	p.T1269T	CATTACAGAAGCT	.	162.0	51.0	155.0	0.0	.	146	.	.	Atlas-SNP
EFNB2	1948	hgsc.bcm.edu	hg19	13	107147231	107147231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	EFNB2	NM_004093	exon4	c.C611T	p.P204L	ATACCTGGATTTG	.	80.0	8.0	68.0	0.0	.	39	.	.	Atlas-SNP
MYH6	4624	hgsc.bcm.edu	hg19	14	23858666	23858666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	MYH6	NM_002471	exon28	c.G3914T	p.R1305L	TTCCCCCGGGTCA	.	110.0	40.0	136.0	0.0	.	274	.	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64676274	64676274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	SYNE2	NM_182914	exon102	c.A18518G	p.K6173R	GTGCCAAAGAGGA	.	76.0	28.0	75.0	0.0	.	577	.	.	Atlas-SNP
HSP90AA1	3320	hgsc.bcm.edu	hg19	14	102605737	102605737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	HSP90AA1	NM_001017963	exon1	c.C5T	p.P2L	CACGGGGGCATCC	.	142.0	50.0	156.0	0.0	.	65	.	.	Atlas-SNP
NIPA1	123606	hgsc.bcm.edu	hg19	15	23086286	23086286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	NIPA1	NM_144599	exon1	c.C126A	p.N42K	GGACCCGTTCACC	.	579.0	208.0	526.0	1.0	.	26	.	.	Atlas-SNP
FGF7	2252	hgsc.bcm.edu	hg19	15	49716642	49716642	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	FGF7	NM_002009	exon2	c.G148T	p.E50X	AGCCCTGAGCGAC	.	159.0	47.0	150.0	0.0	.	21	.	.	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	hg19	16	1269083	1269083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	CACNA1H	NM_021098	exon34	c.C6001T	p.R2001W	TCCCCTCGGGGCA	.	135.0	41.0	120.0	0.0	.	317	.	.	Atlas-SNP
RNF151	146310	hgsc.bcm.edu	hg19	16	2018778	2018778	+	Missense_Mutation	SNP	G	G	T	rs376750121	alternate_allele	TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	RNF151	NM_174903	exon4	c.G590T	p.R197L	TCGTTCGTAGAGA	.	155.0	59.0	131.0	0.0	.	12	.	.	Atlas-SNP
SCNN1G	6340	hgsc.bcm.edu	hg19	16	23203678	23203678	+	Silent	SNP	A	A	C	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	SCNN1G	NM_001039	exon4	c.A624C	p.S208S	GTGCTCAAATGAC	.	74.0	29.0	76.0	0.0	.	82	.	.	Atlas-SNP
TNRC6A	27327	hgsc.bcm.edu	hg19	16	24834981	24834981	+	Silent	SNP	C	C	T	rs373265827		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	TNRC6A	NM_014494	exon25	c.C5742T	p.H1914H	CCTTCACGGCACT	.	128.0	42.0	141.0	0.0	.	171	.	.	Atlas-SNP
SALL1	6299	hgsc.bcm.edu	hg19	16	51172810	51172810	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	SALL1	NM_002968	exon2	c.T3323A	p.V1108D	GACGGGACGTGAC	.	116.0	36.0	139.0	0.0	.	301	.	.	Atlas-SNP
PKD1L2	114780	hgsc.bcm.edu	hg19	16	81208430	81208430	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	PKD1L2	NM_001076780	exon16	c.C2673T	p.G891G	CTCGGGGCCACCC	.	57.0	19.0	67.0	0.0	.	361	.	.	Atlas-SNP
FOXL1	2300	hgsc.bcm.edu	hg19	16	86612573	86612573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	FOXL1	NM_005250	exon1	c.C244A	p.R82S	ATGGACCGCTTCC	.	249.0	104.0	265.0	0.0	.	39	.	.	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	hg19	16	89350828	89350828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	ANKRD11	NM_001256183	exon9	c.A2122G	p.K708E	ATTCTTTTTCTTC	.	118.0	51.0	103.0	0.0	.	195	.	.	Atlas-SNP
KRT39	390792	hgsc.bcm.edu	hg19	17	39118496	39118496	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	KRT39	NM_213656	exon5	c.A914T	p.Q305L	CATTGCTGCTGTT	.	38.0	19.0	73.0	0.0	.	53	.	.	Atlas-SNP
CRHR1	1394	hgsc.bcm.edu	hg19	17	43893892	43893892	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	CRHR1	NM_001145148	exon3	c.A185T	p.Q62L	CGGGGCAGCTAGT	.	49.0	35.0	77.0	0.0	.	48	.	.	Atlas-SNP
CEP95	90799	hgsc.bcm.edu	hg19	17	62532722	62532722	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	CEP95	NM_138363	exon18	c.A2073G	p.I691M	ACAGATATTTAAG	.	458.0	165.0	452.0	0.0	.	103	.	.	Atlas-SNP
SMCHD1	23347	hgsc.bcm.edu	hg19	18	2772286	2772286	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	SMCHD1	NM_015295	exon41	c.A5091T	p.S1697S	GCTATCAGAACAA	.	97.0	35.0	109.0	0.0	.	88	.	.	Atlas-SNP
EEF2	1938	hgsc.bcm.edu	hg19	19	3981359	3981359	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	EEF2	NM_001961	exon7	c.A989C	p.K330T	CCTTCTTTGTCCT	.	92.0	34.0	80.0	0.0	.	57	.	.	Atlas-SNP
DUS3L	56931	hgsc.bcm.edu	hg19	19	5790068	5790068	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	DUS3L	NM_020175	exon2	c.C377G	p.S126C	ATTAGGGAGGGAC	.	165.0	46.0	159.0	0.0	.	42	.	.	Atlas-SNP
SH2D3A	10045	hgsc.bcm.edu	hg19	19	6752638	6752638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	SH2D3A	NM_005490	exon10	c.G1697A	p.G566D	AGGACGCCGAGGA	.	87.0	9.0	87.0	0.0	.	53	.	.	Atlas-SNP
COL5A3	50509	hgsc.bcm.edu	hg19	19	10087234	10087234	+	Silent	SNP	C	C	T	rs146470482	bycluster;byfrequency;alternate_allele	TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	COL5A3,NS,carcinoma,0,1	COL5A3	NM_015719	exon45	c.G3342A	p.P1114P	ACTCACCGGGGGA	.	58.0	17.0	30.0	0.0	.	243	.	C|0.999;G|0.001	Atlas-SNP
ZNF285	26974	hgsc.bcm.edu	hg19	19	44891428	44891428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	ZNF285	NM_152354	exon4	c.C979T	p.R327C	AGCTGCGCCTGAA	.	111.0	37.0	135.0	0.0	.	86	.	.	Atlas-SNP
MYBPC2	4606	hgsc.bcm.edu	hg19	19	50961957	50961957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	MYBPC2	NM_004533	exon21	c.G2452T	p.G818W	ATCGCGGGGCGCA	.	79.0	25.0	60.0	0.0	.	103	.	.	Atlas-SNP
PLCB4	5332	hgsc.bcm.edu	hg19	20	9424869	9424869	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	PLCB4	NM_001172646	exon31	c.T2859A	p.S953S	AAATTCTTTAAAG	.	120.0	48.0	101.0	0.0	.	204	.	.	Atlas-SNP
MORC3	23515	hgsc.bcm.edu	hg19	21	37742093	37742093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	MORC3	NM_015358	exon15	c.G2427A	p.M809I	TGAAATGGATGAG	.	115.0	40.0	103.0	0.0	.	78	.	.	Atlas-SNP
TCEANC	170082	hgsc.bcm.edu	hg19	X	13681525	13681525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	TCEANC	NM_152634	exon4	c.T988C	p.C330R	AGACGCTGTGAGA	.	143.0	101.0	147.0	1.0	.	29	.	.	Atlas-SNP
RPS6KA3	6197	hgsc.bcm.edu	hg19	X	20185787	20185787	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	RPS6KA3	NM_004586	exon17	c.C1522G	p.Q508E	ATTTTTGTCTAAG	.	202.0	135.0	195.0	0.0	.	110	.	.	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66765176	66765176	+	Missense_Mutation	SNP	A	A	T	rs62636527		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	AR	NM_000044	exon1	c.A188T	p.Q63L	AGCAGCAGCAGCA	.	96.0	22.0	76.0	0.0	.	249	.	A|0.982;T|0.018	Atlas-SNP
PCDH19	57526	hgsc.bcm.edu	hg19	X	99596912	99596912	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	PCDH19	NM_001184880	exon5	c.T2837G	p.M946R	TCAGGCATCTGAG	.	66.0	11.0	54.0	0.0	.	269	.	.	Atlas-SNP
ARMCX3	51566	hgsc.bcm.edu	hg19	X	100880947	100880947	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	ARMCX3	NM_016607	exon5	c.T978G	p.N326K	TCAGAATCAATTC	.	195.0	138.0	186.0	0.0	.	33	.	.	Atlas-SNP
SEC23B	10483	hgsc.bcm.edu	hg19	20	18506573	18506573	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	SEC23B	NM_032985	exon7	c.830delT	p.L277fs	.	.	120.0	38.0	124.0	0.0	.	70	.	.	Atlas-INDEL
CUX2	23316	hgsc.bcm.edu	hg19	12	111729223	111729223	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	CUX2	NM_015267	exon5	c.302delA	p.D101fs	.	.	100.0	33.0	74.0	0.0	.	145	.	.	Atlas-INDEL
SLC4A3	6508	hgsc.bcm.edu	hg19	2	220497642	220497642	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	SLC4A3	NM_201574	exon9	c.1268delC	p.A423fs	.	.	144.0	49.0	149.0	0.0	.	144	.	.	Atlas-INDEL
LRRD1	401387	hgsc.bcm.edu	hg19	7	91793161	91793162	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	LRRD1	NM_001161528	exon1	c.1356_1357del	p.452_453del	.	.	192.0	48.0	132.0	0.0	.	35	.	.	Atlas-INDEL
MYH4	4622	hgsc.bcm.edu	hg19	17	10358067	10358067	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	MYH4	NM_017533	exon22	c.2497delT	p.W833fs	.	.	77.0	43.0	122.0	0.0	.	349	.	.	Atlas-INDEL
ZNF519	162655	hgsc.bcm.edu	hg19	18	14105451	14105454	+	Frame_Shift_Del	DEL	AGGT	AGGT	-	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	AGGT	AGGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	ZNF519	NM_145287	exon3	c.1086_1089del	p.362_363del	.	.	61.0	17.0	67.0	0.0	.	53	.	.	Atlas-INDEL
C6orf223	221416	hgsc.bcm.edu	hg19	6	43970601	43970617	+	Frame_Shift_Del	DEL	CGGGACAGGTGACTCCT	CGGGACAGGTGACTCCT	-	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	CGGGACAGGTGACTCCT	CGGGACAGGTGACTCCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	C6orf223	NM_153246	exon4	c.466_482del	p.156_161del	.	.	42.0	12.0	40.0	0.0	.	14	.	.	Atlas-INDEL
TP53	7157	hgsc.bcm.edu	hg19	17	7579521	7579521	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	TP53_ENST00000413465,NS,carcinoma,-1,3	TP53	NM_001126112	exon4	c.167delA	p.E56fs	.	.	66.0	45.0	137.0	0.0	.	33396	.	.	Atlas-INDEL
APOB	338	hgsc.bcm.edu	hg19	2	21231201	21231202	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	APOB,NS,carcinoma,0,1	APOB	NM_000384	exon26	c.8539_8540insT	p.G2847fs	.	.	105.0	38.0	84.0	0.0	.	761	.	.	Atlas-INDEL
ZNF784	147808	hgsc.bcm.edu	hg19	19	56133523	56133524	+	In_Frame_Ins	INS	-	-	CCG	novel		TCGA-DD-AAEI-01A-11D-A40R-10	TCGA-DD-AAEI-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	076dd458-720e-4989-8ec2-6d49897b1479	233f19ee-f0d2-4fa9-ae52-fa3da11b3489	.	ZNF784	NM_203374	exon2	c.566_567insCGG	p.G189delinsAG	.	.	39.0	14.0	40.0	0.0	.	9	.	.	Atlas-INDEL
