Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TMEM88B	643965	hgsc.bcm.edu	hg19	1	1361567	1361567	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	.	NM_001146685	exon1	c.A60T	p.T20T	CGACACAGCGCCC	.	80.0	29.0	136.0	0.0	.	.	.	.	Atlas-SNP
CSF3R	1441	hgsc.bcm.edu	hg19	1	36937988	36937988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	CSF3R	NM_156039	exon8	c.G848A	p.G283D	AGGGGGCCCACCT	.	46.0	9.0	53.0	0.0	.	157	.	.	Atlas-SNP
PTCH2	8643	hgsc.bcm.edu	hg19	1	45288095	45288095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	PTCH2	NM_003738	exon22	c.A3604G	p.T1202A	ACCCAGTGGCTGG	.	32.0	10.0	49.0	0.0	.	96	.	.	Atlas-SNP
SIKE1	80143	hgsc.bcm.edu	hg19	1	115318966	115318966	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	SIKE1,bladder,carcinoma,0,1	SIKE1	NM_001102396	exon5	c.534+1G>C	.	ATCTTACCTCTAA	.	69.0	8.0	76.0	0.0	.	12	.	.	Atlas-SNP
HCN3	57657	hgsc.bcm.edu	hg19	1	155247573	155247573	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	HCN3	NM_020897	exon1	c.G192T	p.V64V	TCGGGTGTTCGGC	.	317.0	205.0	258.0	1.0	.	74	.	.	Atlas-SNP
KIRREL	55243	hgsc.bcm.edu	hg19	1	158054346	158054346	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	KIRREL	NM_018240	exon4	c.C487G	p.Q163E	ACGCAGCAGGAGG	.	183.0	9.0	164.0	0.0	.	346	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186056407	186056407	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	HMCN1	NM_031935	exon59	c.T9105G	p.C3035W	CACTTGTATAGCT	.	242.0	54.0	191.0	0.0	.	797	.	.	Atlas-SNP
FAM5C	339479	hgsc.bcm.edu	hg19	1	190068054	190068054	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	FAM5C,NS,carcinoma,-2,1	FAM5C	NM_199051	exon8	c.C1395A	p.T465T	GTAGCCGGTGTTG	.	140.0	30.0	102.0	0.0	.	343	.	.	Atlas-SNP
SYT14	255928	hgsc.bcm.edu	hg19	1	210332796	210332796	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	SYT14	NM_001146261	exon9	c.T1520A	p.I507K	ACTTGATAGGTGG	.	221.0	56.0	183.0	0.0	.	89	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228496077	228496077	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	OBSCN	NM_001271223	exon58	c.C15603A	p.T5201T	GCTCACCGTCAGA	.	73.0	18.0	60.0	0.0	.	2142	.	.	Atlas-SNP
DPYSL5	56896	hgsc.bcm.edu	hg19	2	27121441	27121441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	DPYSL5	NM_001253724	exon2	c.A74G	p.E25G	CCCACGAGGCTGA	.	166.0	68.0	181.0	0.0	.	69	.	.	Atlas-SNP
SLC30A3	7781	hgsc.bcm.edu	hg19	2	27481124	27481124	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	SLC30A3	NM_003459	exon3	c.T329A	p.L110Q	TCCGCCAGCAAGT	.	79.0	27.0	117.0	0.0	.	39	.	.	Atlas-SNP
FSIP2	401024	hgsc.bcm.edu	hg19	2	186671383	186671383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	FSIP2	NM_173651	exon17	c.G17617A	p.A5873T	TTTCCCGCTAAGT	.	243.0	102.0	254.0	0.0	.	251	.	.	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	hg19	2	220344828	220344828	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	SPEG	NM_005876	exon25	c.A5308C	p.N1770H	ATTGTCAATCAGA	.	29.0	12.0	40.0	0.0	.	272	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266107	41266107	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	CTNNB1,NS,carcinoma,0,1	CTNNB1	NM_001098209	exon3	c.T104G	p.I35S	CTGGAATCCATTC	.	97.0	34.0	107.0	0.0	.	4904	.	.	Atlas-SNP
SPATA16	83893	hgsc.bcm.edu	hg19	3	172834939	172834939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	SPATA16	NM_031955	exon2	c.G583T	p.A195S	CTGCTGCCAAGGC	.	70.0	22.0	91.0	0.0	.	111	.	.	Atlas-SNP
SPATA16	83893	hgsc.bcm.edu	hg19	3	172834940	172834940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	SPATA16	NM_031955	exon2	c.G582T	p.L194F	TGCTGCCAAGGCG	.	70.0	21.0	92.0	0.0	.	111	.	.	Atlas-SNP
SEL1L3	23231	hgsc.bcm.edu	hg19	4	25836840	25836840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	SEL1L3	NM_015187	exon3	c.G839A	p.R280H	CTCTGGCGTCGAG	.	61.0	17.0	65.0	0.0	.	62	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	hg19	4	55564702	55564702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	KIT,NS,haematopoietic_neoplasm,0,1	KIT	NM_000222	exon3	c.C590T	p.S197L	TGCTGTCGGAAAA	.	41.0	16.0	59.0	0.0	.	7396	.	.	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	hg19	4	85719181	85719181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	WDFY3	NM_014991	exon18	c.C2903T	p.P968L	GAACTTGGTTTGT	.	60.0	18.0	88.0	0.0	.	314	.	.	Atlas-SNP
AQPEP	0	hgsc.bcm.edu	hg19	5	115318983	115318983	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	.	NM_173800	exon2	c.696-1G>T	.	ATTTCAGGGCCCT	.	353.0	130.0	442.0	0.0	.	.	.	.	Atlas-SNP
SLIT3	6586	hgsc.bcm.edu	hg19	5	168189636	168189636	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	SLIT3	NM_001271946	exon15	c.C1518T	p.P506P	CTTCTCGGGGCAC	.	56.0	18.0	80.0	0.0	.	224	.	.	Atlas-SNP
MDFI	4188	hgsc.bcm.edu	hg19	6	41613971	41613971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	MDFI,NS,malignant_melanoma,0,1	MDFI	NM_005586	exon3	c.C184A	p.P62T	CCCATGCCCCAAG	.	140.0	62.0	225.0	0.0	.	19	.	.	Atlas-SNP
MDFI	4188	hgsc.bcm.edu	hg19	6	41613972	41613972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	MDFI	NM_005586	exon3	c.C185A	p.P62H	CCATGCCCCAAGG	.	142.0	61.0	223.0	0.0	.	19	.	.	Atlas-SNP
CRIP3	401262	hgsc.bcm.edu	hg19	6	43274226	43274226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	CRIP3	NM_206922	exon5	c.G358A	p.E120K	AGGTCTCCCCAGT	.	51.0	21.0	81.0	0.0	.	30	.	.	Atlas-SNP
GPR110	266977	hgsc.bcm.edu	hg19	6	46976900	46976900	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	GPR110	NM_153840	exon11	c.G2271T	p.V757V	GAAGTTCACAGCC	.	163.0	58.0	191.0	0.0	.	102	.	.	Atlas-SNP
TNFRSF21	27242	hgsc.bcm.edu	hg19	6	47251829	47251829	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	TNFRSF21	NM_014452	exon3	c.T1088A	p.V363E	ATCACCACAAGCA	.	79.0	34.0	89.0	0.0	.	61	.	.	Atlas-SNP
HDAC2	3066	hgsc.bcm.edu	hg19	6	114277278	114277278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	HDAC2	NM_001527	exon5	c.G396T	p.M132I	AACAGCCATATCA	.	56.0	37.0	91.0	0.0	.	102	.	.	Atlas-SNP
MTRF1L	54516	hgsc.bcm.edu	hg19	6	153316354	153316354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	MTRF1L	NM_019041	exon3	c.C440T	p.S147L	ATCTCTGATGTAA	.	194.0	71.0	211.0	0.0	.	21	.	.	Atlas-SNP
THBS2	7058	hgsc.bcm.edu	hg19	6	169620434	169620434	+	Splice_Site	SNP	T	T	G	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	THBS2	NM_003247	exon23	c.3372-2A>C	.	AGACTCTAAAAAT	.	83.0	32.0	113.0	0.0	.	230	.	.	Atlas-SNP
THBS2	7058	hgsc.bcm.edu	hg19	6	169646339	169646339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	THBS2	NM_003247	exon5	c.C647A	p.S216Y	TCCACAGAGTTTT	.	66.0	25.0	88.0	0.0	.	230	.	.	Atlas-SNP
TNRC18	84629	hgsc.bcm.edu	hg19	7	5352833	5352833	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	TNRC18	NM_001080495	exon27	c.C7689T	p.S2563S	ACTACTGCTGCTG	.	78.0	5.0	47.0	0.0	.	311	.	.	Atlas-SNP
CUX1	1523	hgsc.bcm.edu	hg19	7	101844891	101844891	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	CUX1	NM_001202543	exon18	c.G2347C	p.E783Q	GCTCCTGAGGCCG	.	55.0	16.0	59.0	0.0	.	253	.	.	Atlas-SNP
PLXNA4	91584	hgsc.bcm.edu	hg19	7	132192829	132192829	+	Silent	SNP	A	A	C	rs142932361	alternate_allele	TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	PLXNA4	NM_001105543	exon2	c.T624G	p.S208S	CGCCTCAGAGTTC	.	52.0	22.0	57.0	0.0	.	873	.	A|1.000;G|0.000	Atlas-SNP
GPR124	25960	hgsc.bcm.edu	hg19	8	37699548	37699548	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	GPR124	NM_032777	exon19	c.T3692A	p.L1231Q	GCTACCTGGGCAG	.	26.0	11.0	9.0	0.0	.	85	.	.	Atlas-SNP
PAG1	55824	hgsc.bcm.edu	hg19	8	81888943	81888943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	PAG1	NM_018440	exon9	c.C1135T	p.P379S	CGCTGGGCCTCCC	.	92.0	30.0	123.0	0.0	.	39	.	.	Atlas-SNP
CDH17	1015	hgsc.bcm.edu	hg19	8	95188826	95188826	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	CDH17,NS,malignant_melanoma,+1,1	CDH17	NM_004063	exon5	c.C367A	p.R123R	TGGGTCGATTGTC	.	149.0	54.0	176.0	0.0	.	119	.	.	Atlas-SNP
RECQL4	9401	hgsc.bcm.edu	hg19	8	145738712	145738712	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	RECQL4	NM_004260	exon15	c.G2352A	p.R784R	CACAGCCCGCACA	.	52.0	18.0	61.0	0.0	.	75	.	.	Atlas-SNP
MLANA	2315	hgsc.bcm.edu	hg19	9	5906982	5906982	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	MLANA	NM_005511	exon4	c.A272C	p.K91T	AAGAGAAAAACTG	.	80.0	24.0	120.0	0.0	.	16	.	.	Atlas-SNP
OR1J1	347168	hgsc.bcm.edu	hg19	9	125239744	125239744	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	OR1J1	NM_001004451	exon1	c.G462T	p.A154A	AGCACACGCACAA	.	82.0	31.0	96.0	0.0	.	46	.	.	Atlas-SNP
GATA3	2625	hgsc.bcm.edu	hg19	10	8106026	8106026	+	Silent	SNP	C	C	T	rs138698611		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	GATA3	NM_001002295	exon4	c.C849T	p.Y283Y	ACACTACCTGTGC	.	107.0	35.0	159.0	0.0	.	182	.	C|1.000;T|0.000	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	17147494	17147494	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	CUBN	NM_001081	exon11	c.A1192C	p.I398L	GGCAAATATTACT	.	60.0	29.0	92.0	0.0	.	515	.	.	Atlas-SNP
ZMIZ1	57178	hgsc.bcm.edu	hg19	10	81064989	81064989	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	ZMIZ1	NM_020338	exon20	c.2354+1G>C	.	GTGCAAGTGAGTG	.	40.0	6.0	80.0	0.0	.	101	.	.	Atlas-SNP
MAT1A	4143	hgsc.bcm.edu	hg19	10	82034403	82034403	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	MAT1A	NM_000429	exon8	c.T958A	p.Y320N	TGGCATAGGAAAC	.	45.0	17.0	71.0	0.0	.	52	.	.	Atlas-SNP
ARFIP2	23647	hgsc.bcm.edu	hg19	11	6500162	6500162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	ARFIP2	NM_001242854	exon5	c.T442C	p.F148L	GACCAAATCGTTC	.	46.0	19.0	69.0	0.0	.	23	.	.	Atlas-SNP
ZDHHC13	54503	hgsc.bcm.edu	hg19	11	19173800	19173800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	ZDHHC13	NM_019028	exon7	c.C680T	p.A227V	TTGCAGCAGGAAA	.	104.0	38.0	154.0	0.0	.	40	.	.	Atlas-SNP
OR8K3	219473	hgsc.bcm.edu	hg19	11	56086232	56086232	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	OR8K3	NM_001005202	exon1	c.C450T	p.L150L	TTACCTCTATTGC	.	86.0	28.0	115.0	0.0	.	92	.	.	Atlas-SNP
FAM111A	63901	hgsc.bcm.edu	hg19	11	58919496	58919496	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	FAM111A	NM_001142520	exon5	c.G355T	p.E119X	GAGATAGAAACTC	.	123.0	43.0	150.0	0.0	.	57	.	.	Atlas-SNP
PLCB3	5331	hgsc.bcm.edu	hg19	11	64023939	64023939	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	PLCB3	NM_000932	exon9	c.T790A	p.Y264N	GTGCTGTACCCGC	.	123.0	44.0	120.0	0.0	.	103	.	.	Atlas-SNP
PRSS23	11098	hgsc.bcm.edu	hg19	11	86518742	86518742	+	Silent	SNP	G	G	C	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	PRSS23	NM_007173	exon2	c.G57C	p.G19G	TGTTGGGCAAGTG	.	68.0	28.0	99.0	0.0	.	49	.	.	Atlas-SNP
CNTN1	1272	hgsc.bcm.edu	hg19	12	41387040	41387040	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	CNTN1	NM_001843	exon17	c.A2082G	p.I694M	CAGTATACCATCT	.	112.0	38.0	136.0	0.0	.	207	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35624441	35624441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	NBEA	NM_015678	exon6	c.A881G	p.H294R	CTGCTCATTTTGT	.	78.0	33.0	131.0	0.0	.	340	.	.	Atlas-SNP
OR11H12	440153	hgsc.bcm.edu	hg19	14	19378063	19378063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	OR11H12,NS,carcinoma,0,1	OR11H12	NM_001013354	exon1	c.C470T	p.A157V	TCTGTGCCAAACT	.	395.0	35.0	530.0	0.0	.	58	.	.	Atlas-SNP
MIPOL1	145282	hgsc.bcm.edu	hg19	14	37754588	37754588	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	MIPOL1	NM_001195296	exon9	c.T559G	p.L187V	CTGCAATTAGCCA	.	81.0	32.0	86.0	0.0	.	50	.	.	Atlas-SNP
LRFN5	145581	hgsc.bcm.edu	hg19	14	42360572	42360572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	LRFN5	NM_152447	exon4	c.T1505C	p.V502A	CAAGAGTCGTGGG	.	54.0	20.0	71.0	0.0	.	269	.	.	Atlas-SNP
VPS39	23339	hgsc.bcm.edu	hg19	15	42458377	42458377	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	VPS39	NM_015289	exon16	c.T1660A	p.F554I	CTGGGAAGTCTCT	.	82.0	27.0	127.0	0.0	.	53	.	.	Atlas-SNP
HCN4	10021	hgsc.bcm.edu	hg19	15	73615463	73615463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	HCN4,NS,carcinoma,0,1	HCN4	NM_005477	exon8	c.C2971A	p.L991M	TGCTCAGTGGGCC	.	57.0	22.0	104.0	0.0	.	150	.	.	Atlas-SNP
IL16	3603	hgsc.bcm.edu	hg19	15	81598392	81598392	+	Silent	SNP	C	C	G	rs145310121	alternate_allele	TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	IL16	NM_001172128	exon17	c.C3564G	p.P1188P	AGAGCCCAGGCAA	.	50.0	19.0	31.0	0.0	.	254	.	C|1.000;T|0.000	Atlas-SNP
IGF1R	3480	hgsc.bcm.edu	hg19	15	99465501	99465501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	IGF1R	NM_000875	exon11	c.C2326A	p.P776T	GAGTACCCTTTCT	.	82.0	26.0	93.0	0.0	.	147	.	.	Atlas-SNP
PDIA2	64714	hgsc.bcm.edu	hg19	16	335428	335428	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	PDIA2	NM_006849	exon6	c.C912A	p.F304L	CCGCTTCCGGGGG	.	45.0	13.0	33.0	0.0	.	51	.	.	Atlas-SNP
ZNF768	79724	hgsc.bcm.edu	hg19	16	30536540	30536540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	ZNF768	NM_024671	exon2	c.C921A	p.H307Q	GCGCTGGTGTTTG	.	61.0	21.0	64.0	0.0	.	28	.	.	Atlas-SNP
LCAT	3931	hgsc.bcm.edu	hg19	16	67977971	67977971	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	LCAT	NM_000229	exon1	c.A34C	p.T12P	GCAGCGTCACCCA	.	101.0	39.0	143.0	0.0	.	31	.	.	Atlas-SNP
PLEKHM1	9842	hgsc.bcm.edu	hg19	17	43531021	43531021	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	PLEKHM1	NM_014798	exon7	c.G2197T	p.D733Y	GGATGTCCCGGAT	.	139.0	52.0	162.0	0.0	.	69	.	.	Atlas-SNP
NOTUM	147111	hgsc.bcm.edu	hg19	17	79914895	79914895	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	NOTUM	NM_178493	exon7	c.A751T	p.K251X	CCAGCTTCTCCAG	.	39.0	11.0	41.0	0.0	.	50	.	.	Atlas-SNP
HMHA1	23526	hgsc.bcm.edu	hg19	19	1084297	1084297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	HMHA1	NM_001258328	exon22	c.G3064A	p.E1022K	GCGGGCGAGGCGG	.	109.0	10.0	146.0	0.0	.	78	.	.	Atlas-SNP
ZNF560	147741	hgsc.bcm.edu	hg19	19	9583900	9583900	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	ZNF560	NM_152476	exon5	c.T193C	p.L65L	CTTCCAACCAAGA	.	28.0	9.0	51.0	0.0	.	162	.	.	Atlas-SNP
KCTD15	79047	hgsc.bcm.edu	hg19	19	34291425	34291425	+	Silent	SNP	G	G	T	rs142074601	bycluster;alternate_allele	TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	KCTD15	NM_001129995	exon3	c.G66T	p.A22A	CACCGCGGTGAGC	.	136.0	59.0	153.0	0.0	.	18	.	G|1.000;A|0.000	Atlas-SNP
UBA2	10054	hgsc.bcm.edu	hg19	19	34925843	34925843	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	UBA2	NM_005499	exon5	c.G429A	p.G143G	AGCTGGGTATCTT	.	338.0	129.0	421.0	0.0	.	53	.	.	Atlas-SNP
ZNF30	90075	hgsc.bcm.edu	hg19	19	35435358	35435358	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	ZNF30	NM_001099438	exon5	c.C1491T	p.A497A	TCGAGCCTCGTAC	.	71.0	23.0	73.0	0.0	.	44	.	.	Atlas-SNP
ZNF114	163071	hgsc.bcm.edu	hg19	19	48789079	48789079	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	ZNF114	NM_153608	exon5	c.A198G	p.R66R	TAAAAGAACATTT	.	88.0	37.0	139.0	0.0	.	46	.	.	Atlas-SNP
PPP6R1	22870	hgsc.bcm.edu	hg19	19	55751023	55751023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	PPP6R1	NM_014931	exon14	c.G1592A	p.S531N	TCGTCACTGGAGG	.	61.0	18.0	62.0	0.0	.	63	.	.	Atlas-SNP
ZNF335	63925	hgsc.bcm.edu	hg19	20	44590731	44590731	+	Missense_Mutation	SNP	C	C	A	rs140842666	alternate_allele	TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	ZNF335	NM_022095	exon10	c.G1624T	p.A542S	CAGCGGCGTGCCG	.	33.0	13.0	25.0	0.0	.	115	.	C|1.000;T|0.000	Atlas-SNP
LCA5L	150082	hgsc.bcm.edu	hg19	21	40778273	40778273	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	LCA5L	NM_152505	exon10	c.C1548A	p.G516G	GAGGGGGCCTTTC	.	99.0	4.0	90.0	0.0	.	57	.	.	Atlas-SNP
C22orf39	128977	hgsc.bcm.edu	hg19	22	19435059	19435059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	C22orf39	NM_173793	exon2	c.C145T	p.P49S	CGCAGGGGCGCGG	.	33.0	14.0	13.0	0.0	.	11	.	.	Atlas-SNP
XG	7499	hgsc.bcm.edu	hg19	X	2712585	2712585	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	XG	NM_001141920	exon6	c.A266G	p.N89S	ACTTCAATGATGT	.	71.0	62.0	57.0	0.0	.	22	.	.	Atlas-SNP
STAG2	10735	hgsc.bcm.edu	hg19	X	123182871	123182871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	STAG2	NM_001042749	exon10	c.A836G	p.D279G	ATCAAGATGAAAT	.	627.0	192.0	337.0	0.0	.	309	.	.	Atlas-SNP
SMARCA1	6594	hgsc.bcm.edu	hg19	X	128645791	128645791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	SMARCA1	NM_139035	exon6	c.A800G	p.K267R	GCATCCTTGTCTC	.	434.0	406.0	156.0	0.0	.	126	.	.	Atlas-SNP
SAGE1	55511	hgsc.bcm.edu	hg19	X	134990278	134990278	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	SAGE1	NM_018666	exon11	c.A1190T	p.E397V	GTGAAGAGAAGAA	.	193.0	172.0	101.0	0.0	.	160	.	.	Atlas-SNP
PODXL	5420	hgsc.bcm.edu	hg19	7	131241049	131241050	+	In_Frame_Ins	INS	-	-	CGACGC	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	PODXL	NM_005397	exon1	c.70_71insGCGTCG	p.P24delinsASP	.	.	65.0	27.0	75.0	0.0	.	53	.	.	Atlas-INDEL
ARVCF	421	hgsc.bcm.edu	hg19	22	19960689	19960692	+	Frame_Shift_Del	DEL	GAGC	GAGC	-	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	GAGC	GAGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	ARVCF	NM_001670	exon14	c.2389_2392del	p.797_798del	.	.	49.0	23.0	51.0	0.0	.	54	.	.	Atlas-INDEL
HERC4	26091	hgsc.bcm.edu	hg19	10	69750905	69750906	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.,1	HERC4	NM_022079	exon12	c.1323_1324insT	p.L441fs	.	.	501.0	158.0	645.0	0.0	.	78	.	.	Atlas-INDEL
WDR63	126820	hgsc.bcm.edu	hg19	1	85598554	85598555	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	.	WDR63	NM_145172	exon23	c.2549_2550insA	p.S850fs	.	.	66.0	26.0	76.0	0.0	.	91	.	.	Atlas-INDEL
ATXN1	6310	hgsc.bcm.edu	hg19	6	16327918	16327919	+	In_Frame_Ins	INS	-	-	TGCTGA	rs71806515	alternate_allele	TCGA-DD-AAVP-01A-11D-A40R-10	TCGA-DD-AAVP-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4ee32767-8d4e-47ab-bbf6-9f623159f16b	c86ff390-e3fe-44f9-8f26-e7c7dd6c5536	ATXN1,rectum,carcinoma,0,1	ATXN1	NM_000332	exon8	c.624_625insTCAGCA	p.Q208delinsHQQ	.	.	25.0	12.0	35.0	0.0	.	117	.	.	Atlas-INDEL
