Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
COL16A1	1307	hgsc.bcm.edu	hg19	1	32131190	32131190	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	COL16A1	NM_001856	exon55	c.C3486T	p.G1162G	CGGTGGGCCCGGA	.	52.0	10.0	50.0	0.0	.	137	.	.	Atlas-SNP
RBBP4	5928	hgsc.bcm.edu	hg19	1	33134435	33134435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	RBBP4	NM_005610	exon5	c.C580T	p.L194F	CACTTACTTAGTG	.	78.0	17.0	75.0	0.0	.	38	.	.	Atlas-SNP
ASB17	127247	hgsc.bcm.edu	hg19	1	76397785	76397785	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	ASB17,NS,carcinoma,-2,1	ASB17	NM_080868	exon1	c.C192T	p.D64D	TAGTGCGTCAAAA	.	147.0	19.0	180.0	0.0	.	53	.	.	Atlas-SNP
RPL5	6125	hgsc.bcm.edu	hg19	1	93299205	93299205	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.,1	RPL5	NM_000969	exon3	c.T177A	p.D59E	CAGAGATATCATT	.	48.0	8.0	67.0	0.0	.	38	.	.	Atlas-SNP
BNIPL	149428	hgsc.bcm.edu	hg19	1	151019153	151019153	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	BNIPL	NM_138278	exon10	c.G1064C	p.G355A	GCTCAGGAGGGAC	.	110.0	29.0	101.0	0.0	.	45	.	.	Atlas-SNP
PLB1	151056	hgsc.bcm.edu	hg19	2	28763246	28763246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	PLB1	NM_001170585	exon12	c.C745T	p.P249S	CCAGAGCCCTGTA	.	35.0	10.0	45.0	0.0	.	255	.	.	Atlas-SNP
FSHR	2492	hgsc.bcm.edu	hg19	2	49190880	49190880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	FSHR	NM_000145	exon10	c.G1080T	p.M360I	GTACCCCATGATA	.	134.0	12.0	147.0	0.0	.	164	.	.	Atlas-SNP
FBLN7	129804	hgsc.bcm.edu	hg19	2	112922614	112922614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	FBLN7	NM_153214	exon3	c.G272A	p.R91K	ACGGCAGAAAGTT	.	85.0	25.0	103.0	0.0	.	49	.	.	Atlas-SNP
BAZ2B	29994	hgsc.bcm.edu	hg19	2	160269055	160269055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	BAZ2B	NM_013450	exon14	c.G2468T	p.G823V	TGCATTCCCTTTT	.	77.0	15.0	76.0	0.0	.	196	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168103526	168103526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	XIRP2	NM_152381	exon9	c.T5624C	p.L1875P	AGTCACTTAAAGA	.	189.0	52.0	181.0	0.0	.	914	.	.	Atlas-SNP
USP40	55230	hgsc.bcm.edu	hg19	2	234402122	234402122	+	Missense_Mutation	SNP	T	T	C	rs368100283		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	USP40	NM_018218	exon24	c.A2899G	p.T967A	AGTTGGTCTGGTC	.	157.0	35.0	183.0	0.0	.	174	.	.	Atlas-SNP
BAP1	8314	hgsc.bcm.edu	hg19	3	52436363	52436363	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	BAP1	NM_004656	exon17	c.A2131T	p.K711X	GCTGCTTGTGGAG	.	60.0	15.0	52.0	0.0	.	371	.	.	Atlas-SNP
BAP1	8314	hgsc.bcm.edu	hg19	3	52442612	52442612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	BAP1,upper_arm,benign_melanocytic_nevus,0,1	BAP1	NM_004656	exon4	c.G133A	p.G45R	TAAATCCATATAC	.	111.0	30.0	132.0	0.0	.	371	.	.	Atlas-SNP
CCDC54	84692	hgsc.bcm.edu	hg19	3	107096716	107096716	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	CCDC54	NM_032600	exon1	c.C282A	p.V94V	AAAAGTCCAGGAA	.	118.0	24.0	108.0	0.0	.	56	.	.	Atlas-SNP
NDUFB4	4710	hgsc.bcm.edu	hg19	3	120320137	120320137	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	NDUFB4	NM_001168331	exon2	c.G360A	p.E120E	ATTTGAGTGATAG	.	33.0	9.0	39.0	0.0	.	21	.	.	Atlas-SNP
ALG1L	200810	hgsc.bcm.edu	hg19	3	125648374	125648374	+	Missense_Mutation	SNP	G	G	C	rs200222793	bycluster;alternate_allele	TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	ALG1L	NM_001195223	exon7	c.C445G	p.L149V	GGTTTAGCTTGCC	.	129.0	31.0	143.0	0.0	.	12	.	G|0.999;T|0.001	Atlas-SNP
HTT	3064	hgsc.bcm.edu	hg19	4	3230458	3230458	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	HTT	NM_002111	exon58	c.T7965C	p.S2655S	CACGTCTCCAGTC	.	94.0	15.0	102.0	0.0	.	221	.	.	Atlas-SNP
EVC	2121	hgsc.bcm.edu	hg19	4	5747031	5747031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	EVC	NM_153717	exon7	c.A902G	p.K301R	TGGAAAAGAAGGA	.	110.0	19.0	110.0	0.0	.	90	.	.	Atlas-SNP
NFXL1	152518	hgsc.bcm.edu	hg19	4	47850263	47850263	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	NFXL1	NM_152995	exon23	c.C2653T	p.Q885X	GTTTTTGCCATAG	.	71.0	11.0	71.0	0.0	.	79	.	.	Atlas-SNP
GPRIN3	285513	hgsc.bcm.edu	hg19	4	90170448	90170448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	GPRIN3	NM_198281	exon2	c.A814G	p.S272G	GTTCGCTAGTGAG	.	52.0	12.0	65.0	0.0	.	90	.	.	Atlas-SNP
PET112	5188	hgsc.bcm.edu	hg19	4	152637251	152637251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	PET112,NS,carcinoma,0,1	PET112	NM_004564	exon5	c.G673A	p.D225N	ACATGTCGGGCTC	.	125.0	22.0	138.0	0.0	.	43	.	.	Atlas-SNP
GFM2	84340	hgsc.bcm.edu	hg19	5	74018369	74018369	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	GFM2	NM_032380	exon20	c.T2046G	p.D682E	TTGCTTATCAGCT	.	109.0	18.0	105.0	0.0	.	38	.	.	Atlas-SNP
SH3PXD2B	285590	hgsc.bcm.edu	hg19	5	171766054	171766054	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	SH3PXD2B	NM_001017995	exon13	c.C2055T	p.G685G	CTGGGGGCCCTCC	.	96.0	16.0	71.0	0.0	.	91	.	.	Atlas-SNP
HIST1H4C	8364	hgsc.bcm.edu	hg19	6	26104199	26104199	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	HIST1H4C	NM_003542	exon1	c.A24T	p.G8G	AGGCGGAAAAGGC	.	93.0	11.0	77.0	0.0	.	14	.	.	Atlas-SNP
DPCR1	135656	hgsc.bcm.edu	hg19	6	30920202	30920202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	DPCR1	NM_080870	exon2	c.C3961T	p.P1321S	TCATTCCCTGCAT	.	107.0	15.0	91.0	0.0	.	99	.	.	Atlas-SNP
UBR2	23304	hgsc.bcm.edu	hg19	6	42637952	42637952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	UBR2	NM_015255	exon35	c.G4004A	p.S1335N	GGGGTAGCTGCGC	.	201.0	27.0	152.0	0.0	.	134	.	.	Atlas-SNP
KLHL32	114792	hgsc.bcm.edu	hg19	6	97561870	97561870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	KLHL32	NM_052904	exon7	c.G839T	p.R280L	AGACTCGCAGGAC	.	130.0	23.0	152.0	0.0	.	85	.	.	Atlas-SNP
SCIN	85477	hgsc.bcm.edu	hg19	7	12610443	12610443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	SCIN	NM_001112706	exon1	c.G31T	p.A11S	GAGTTCGCCCGGG	.	84.0	12.0	77.0	0.0	.	105	.	.	Atlas-SNP
SP8	221833	hgsc.bcm.edu	hg19	7	20825271	20825271	+	Silent	SNP	C	C	A	rs145875827	alternate_allele	TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	SP8	NM_182700	exon2	c.G165T	p.S55S	AGAGGACGAGGAG	.	77.0	14.0	88.0	0.0	.	43	.	C|1.000;T|0.000	Atlas-SNP
ELN	2006	hgsc.bcm.edu	hg19	7	73452038	73452038	+	Silent	SNP	G	G	A	rs376512299		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	ELN,NS,haematopoietic_neoplasm,0,1	ELN	NM_001081753	exon4	c.G165A	p.A55A	TGCAGCGCTGGGG	.	100.0	24.0	80.0	0.0	.	81	.	.	Atlas-SNP
ZNF804B	219578	hgsc.bcm.edu	hg19	7	88963559	88963559	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	ZNF804B	NM_181646	exon4	c.C1263T	p.S421S	AGTTAGCAAAAAT	.	85.0	17.0	86.0	0.0	.	322	.	.	Atlas-SNP
TRPS1	7227	hgsc.bcm.edu	hg19	8	116426762	116426762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	TRPS1_ENST00000395715,caecum,carcinoma,0,4	TRPS1	NM_014112	exon7	c.G3374A	p.R1125Q	CAGAACCGCAGCC	.	214.0	35.0	163.0	0.0	.	516	.	.	Atlas-SNP
TMEM245	23731	hgsc.bcm.edu	hg19	9	111882014	111882014	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	.	NM_032012	exon1	c.G180T	p.V60V	GAACAGCACGGCC	.	45.0	16.0	49.0	0.0	.	.	.	.	Atlas-SNP
SETX	23064	hgsc.bcm.edu	hg19	9	135205038	135205038	+	Silent	SNP	T	T	G	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	SETX	NM_015046	exon10	c.A1947C	p.P649P	TTTCATTGGTTCT	.	68.0	12.0	62.0	0.0	.	234	.	.	Atlas-SNP
TTC40	54777	hgsc.bcm.edu	hg19	10	134713078	134713078	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	TTC40	NM_001200049	exon23	c.T3017A	p.L1006Q	AGTCGCAGCTGCT	.	98.0	27.0	76.0	0.0	.	100	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1093075	1093075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	MUC2	NM_002457	exon30	c.A4894G	p.I1632V	ACAGCCATCACCA	.	21.0	4.0	28.0	0.0	.	614	.	.	Atlas-SNP
OR4A47	403253	hgsc.bcm.edu	hg19	11	48510973	48510973	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	OR4A47	NM_001005512	exon1	c.T629A	p.L210Q	TGTTTCTGCTCTT	.	85.0	20.0	84.0	0.0	.	72	.	.	Atlas-SNP
OR4D6	219983	hgsc.bcm.edu	hg19	11	59224678	59224678	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	OR4D6	NM_001004708	exon1	c.T245A	p.L82Q	AGTTCCTGGTGGA	.	125.0	34.0	143.0	0.0	.	65	.	.	Atlas-SNP
MAP4K2	5871	hgsc.bcm.edu	hg19	11	64568236	64568236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	MAP4K2	NM_004579	exon10	c.G725T	p.W242L	CCTTACCAGCGAG	.	37.0	13.0	35.0	0.0	.	83	.	.	Atlas-SNP
OVOL1	5017	hgsc.bcm.edu	hg19	11	65562094	65562094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	OVOL1	NM_004561	exon3	c.G404A	p.R135H	TGAACCGCCACAT	.	85.0	22.0	79.0	0.0	.	15	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103026161	103026161	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	DYNC2H1	NM_001377	exon25	c.A3675G	p.L1225L	TAGTCTAGAGAAA	.	134.0	28.0	119.0	0.0	.	246	.	.	Atlas-SNP
ARID2	196528	hgsc.bcm.edu	hg19	12	46231303	46231303	+	Silent	SNP	T	T	G	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	ARID2	NM_152641	exon10	c.T1143G	p.L381L	AAATCTTTGCAAA	.	112.0	26.0	105.0	0.0	.	311	.	.	Atlas-SNP
COL2A1	1280	hgsc.bcm.edu	hg19	12	48376330	48376330	+	Silent	SNP	A	A	C	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	COL2A1	NM_001844	exon34	c.T2256G	p.P752P	CTCGCCAGGCATT	.	66.0	18.0	94.0	0.0	.	368	.	.	Atlas-SNP
CS	1431	hgsc.bcm.edu	hg19	12	56669864	56669864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	CS	NM_004077	exon7	c.A704G	p.D235G	GACCAGTCCAGGT	.	102.0	25.0	122.0	0.0	.	44	.	.	Atlas-SNP
METAP2	10988	hgsc.bcm.edu	hg19	12	95867960	95867960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	METAP2	NM_006838	exon1	c.C5T	p.A2V	ACATGGCGGGTGT	.	163.0	32.0	147.0	0.0	.	28	.	.	Atlas-SNP
ZC3H13	23091	hgsc.bcm.edu	hg19	13	46563046	46563046	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	ZC3H13	NM_015070	exon9	c.T1131C	p.H377H	CAAAGAATGTGAA	.	98.0	28.0	126.0	0.0	.	197	.	.	Atlas-SNP
BCL11B	64919	hgsc.bcm.edu	hg19	14	99640931	99640931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	BCL11B	NM_138576	exon4	c.G2242A	p.G748S	GGCTGCCGTTCTC	.	29.0	10.0	26.0	0.0	.	108	.	.	Atlas-SNP
FURIN	5045	hgsc.bcm.edu	hg19	15	91423406	91423406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	FURIN	NM_002569	exon13	c.G1459A	p.A487T	GAGCACGCTCAGG	.	82.0	19.0	105.0	0.0	.	85	.	.	Atlas-SNP
GLIS2	84662	hgsc.bcm.edu	hg19	16	4386759	4386759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	GLIS2	NM_032575	exon6	c.G809A	p.C270Y	AGGGCTGCAACAA	.	93.0	6.0	116.0	0.0	.	29	.	.	Atlas-SNP
KIAA0556	23247	hgsc.bcm.edu	hg19	16	27709794	27709794	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	KIAA0556	NM_015202	exon9	c.G1086A	p.K362K	CAGAAAGGCCGAG	.	60.0	17.0	72.0	0.0	.	348	.	.	Atlas-SNP
SF3B3	23450	hgsc.bcm.edu	hg19	16	70605100	70605100	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	SF3B3	NM_012426	exon25	c.A3511T	p.K1171X	CCTGTGAAGGTAG	.	66.0	34.0	68.0	0.0	.	99	.	.	Atlas-SNP
KIF1C	10749	hgsc.bcm.edu	hg19	17	4927022	4927022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	KIF1C	NM_006612	exon23	c.G2888A	p.R963H	GGCTGCGCAGGCC	.	82.0	4.0	104.0	0.0	.	70	.	.	Atlas-SNP
ERBB2	2064	hgsc.bcm.edu	hg19	17	37876052	37876052	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	ERBB2	NM_004448	exon16	c.G1911A	p.L637L	GGACCTGGATGAC	.	180.0	43.0	97.0	0.0	.	429	.	.	Atlas-SNP
KRT10	3858	hgsc.bcm.edu	hg19	17	38975319	38975319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	KRT10	NM_000421	exon7	c.G1468A	p.G490S	CGTGGCCGCCGCC	.	96.0	18.0	34.0	0.0	.	56	.	.	Atlas-SNP
RAB5C	5878	hgsc.bcm.edu	hg19	17	40277843	40277843	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	RAB5C	NM_001252039	exon7	c.G708A	p.Q236Q	GTTCTCCTGGAGG	.	48.0	5.0	48.0	0.0	.	20	.	.	Atlas-SNP
NGFR	4804	hgsc.bcm.edu	hg19	17	47590143	47590143	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	NGFR	NM_002507	exon6	c.C1056T	p.N352N	TCTCAACGGCTCT	.	172.0	7.0	173.0	0.0	.	46	.	.	Atlas-SNP
KLC3	147700	hgsc.bcm.edu	hg19	19	45848977	45848977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	KLC3	NM_177417	exon2	c.G178A	p.G60S	GCAGCCGGCTTGG	.	141.0	6.0	122.0	0.0	.	37	.	.	Atlas-SNP
RIN2	54453	hgsc.bcm.edu	hg19	20	19955803	19955803	+	Silent	SNP	C	C	T	rs370646119		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	RIN2	NM_001242581	exon8	c.C1281T	p.S427S	CTTGAGCGGCGGC	.	675.0	47.0	728.0	0.0	.	126	.	.	Atlas-SNP
PCIF1	63935	hgsc.bcm.edu	hg19	20	44571777	44571777	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	PCIF1	NM_022104	exon8	c.G715T	p.E239X	ATGCTGGAGCGCA	.	51.0	16.0	63.0	0.0	.	51	.	.	Atlas-SNP
ZBTB46	140685	hgsc.bcm.edu	hg19	20	62421975	62421975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	ZBTB46	NM_025224	exon2	c.A136G	p.K46E	CGTTCTTGTGCGC	.	41.0	8.0	33.0	0.0	.	72	.	.	Atlas-SNP
RWDD2B	10069	hgsc.bcm.edu	hg19	21	30380106	30380106	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	RWDD2B	NM_016940	exon4	c.G701C	p.S234T	CAGGCACTTTGTG	.	54.0	14.0	52.0	0.0	.	24	.	.	Atlas-SNP
TEX33	339669	hgsc.bcm.edu	hg19	22	37395926	37395926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	TEX33	NM_001163857	exon4	c.G589A	p.D197N	AGTAGTCTGAGAA	.	43.0	7.0	53.0	0.0	.	25	.	.	Atlas-SNP
SBF1	6305	hgsc.bcm.edu	hg19	22	50893272	50893272	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	SBF1	NM_002972	exon35	c.A4783T	p.N1595Y	TGTAATTGTGGAA	.	44.0	17.0	64.0	0.0	.	211	.	.	Atlas-SNP
FRMPD4	9758	hgsc.bcm.edu	hg19	X	12701706	12701706	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	FRMPD4	NM_014728	exon6	c.G573A	p.S191S	AGTGTCGGTGAGT	.	101.0	49.0	116.0	0.0	.	214	.	.	Atlas-SNP
MED14	9282	hgsc.bcm.edu	hg19	X	40526016	40526016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	MED14	NM_004229	exon24	c.A3221G	p.H1074R	ATTCCATGCGAGG	.	161.0	72.0	183.0	0.0	.	108	.	.	Atlas-SNP
FGF16	8823	hgsc.bcm.edu	hg19	X	76711987	76711987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	FGF16	NM_003868	exon2	c.T325C	p.S109P	TCCATGTCCAGAG	.	100.0	41.0	114.0	0.0	.	16	.	.	Atlas-SNP
CYLC1	1538	hgsc.bcm.edu	hg19	X	83126541	83126541	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	CYLC1	NM_021118	exon3	c.A140T	p.D47V	CAAATGATAAATC	.	388.0	190.0	372.0	1.0	.	272	.	.	Atlas-SNP
RAB39B	116442	hgsc.bcm.edu	hg19	X	154493379	154493379	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	RAB39B	NM_171998	exon1	c.C195T	p.T65T	ACCCGCGGTATCC	.	64.0	30.0	61.0	0.0	.	37	.	.	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15699	15699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	.	ENST00000361789	exon1	c.G953A	p.R318H	TATTTCGCCCACT	.	24.0	11.0	17.0	0.0	.	.	.	.	Atlas-SNP
PLEKHA5	54477	hgsc.bcm.edu	hg19	12	19427544	19427545	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.,2	PLEKHA5	NM_001256470	exon11	c.940_941insA	p.Q314fs	.	.	166.0	33.0	140.0	0.0	.	198	.	.	Atlas-INDEL
HIST1H1E	3008	hgsc.bcm.edu	hg19	6	26156767	26156769	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	HIST1H1E	NM_005321	exon1	c.148_150del	p.50_50del	.	.	85.0	25.0	68.0	0.0	.	69	.	.	Atlas-INDEL
NEB	4703	hgsc.bcm.edu	hg19	2	152426620	152426620	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AAVR-01A-11D-A40R-10	TCGA-DD-AAVR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de2cbef6-7b85-4ffc-b131-32615e787573	c5cdd91e-522e-444f-9a7e-81c5d13d1a33	.	NEB	NM_001271208	exon109	c.17406delG	p.K5802fs	.	.	57.0	13.0	57.0	0.0	.	1697	.	.	Atlas-INDEL
