Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
DNAJC16	23341	hgsc.bcm.edu	hg19	1	15888720	15888720	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	DNAJC16	NM_015291	exon9	c.C1238G	p.T413S	CAAACACTCAAGA	.	127.0	46.0	135.0	0.0	.	59	.	.	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	hg19	1	16199516	16199516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	SPEN	NM_015001	exon2	c.A289G	p.I97V	GTTTCCATAGCAT	.	155.0	72.0	149.0	0.0	.	374	.	.	Atlas-SNP
PADI1	29943	hgsc.bcm.edu	hg19	1	17559395	17559395	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	PADI1	NM_013358	exon11	c.A1243T	p.S415C	GACGTCAGCCCGC	.	54.0	21.0	76.0	0.0	.	77	.	.	Atlas-SNP
LRRC8C	84230	hgsc.bcm.edu	hg19	1	90178412	90178412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	LRRC8C	NM_032270	exon3	c.G283A	p.E95K	ACTGTGGAAATGA	.	244.0	15.0	216.0	0.0	.	73	.	.	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	hg19	1	103348775	103348775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	COL11A1	NM_080629	exon64	c.C4987T	p.P1663S	TGTCTGGATAAAT	.	89.0	46.0	87.0	0.0	.	972	.	.	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	hg19	1	152084174	152084174	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	TCHH	NM_007113	exon3	c.C1519G	p.L507V	GCCTTAGTTGCTG	.	37.0	8.0	33.0	0.0	.	275	.	.	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	hg19	1	152084221	152084221	+	Missense_Mutation	SNP	A	A	C	rs202112040		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	TCHH	NM_007113	exon3	c.T1472G	p.L491R	TCCTCGAGCTTCA	.	40.0	13.0	23.0	0.0	.	275	.	.	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	hg19	1	152084224	152084224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	TCHH	NM_007113	exon3	c.A1469G	p.K490R	TCGAGCTTCAGCC	.	40.0	12.0	25.0	0.0	.	275	.	.	Atlas-SNP
IVL	3713	hgsc.bcm.edu	hg19	1	152883756	152883756	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	IVL	NM_005547	exon2	c.C1483T	p.Q495X	CCAGAGCAGCAGG	.	125.0	45.0	138.0	0.0	.	100	.	.	Atlas-SNP
ATP8B2	57198	hgsc.bcm.edu	hg19	1	154306627	154306627	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	ATP8B2	NM_020452	exon10	c.A733C	p.S245R	AAATTCAGCGGAA	.	124.0	43.0	129.0	0.0	.	158	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228475833	228475833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	OBSCN	NM_001271223	exon42	c.T11170C	p.C3724R	CTGCGGTGTGAGC	.	132.0	70.0	136.0	0.0	.	2142	.	.	Atlas-SNP
PCNXL2	80003	hgsc.bcm.edu	hg19	1	233270849	233270849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	PCNXL2	NM_014801	exon21	c.C3747A	p.S1249R	AGTGAAGCTCAAG	.	225.0	97.0	265.0	1.0	.	204	.	.	Atlas-SNP
RPS7	6201	hgsc.bcm.edu	hg19	2	3624107	3624107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	RPS7	NM_001011	exon4	c.A178G	p.I60V	AAAGCTATCATAA	.	385.0	199.0	393.0	0.0	.	13	.	.	Atlas-SNP
TRABD2A	129293	hgsc.bcm.edu	hg19	2	85049140	85049140	+	Silent	SNP	G	G	C	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	.	NM_001080824	exon6	c.C1272G	p.G424G	GCTGTGGTGGGAA	.	108.0	47.0	132.0	0.0	.	.	.	.	Atlas-SNP
NFE2L2	4780	hgsc.bcm.edu	hg19	2	178098862	178098862	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	NFE2L2	NM_006164	exon2	c.A183C	p.Q61H	TTGGAGTTGTTCT	.	61.0	14.0	94.0	0.0	.	225	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179435762	179435762	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	TTN	NM_001267550	exon326	c.G75097C	p.D25033H	CACCGTCATAGGT	.	71.0	33.0	76.0	0.0	.	18412	.	.	Atlas-SNP
GULP1	51454	hgsc.bcm.edu	hg19	2	189449050	189449050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	GULP1	NM_016315	exon10	c.C668T	p.S223F	CATTTTCTCCAAT	.	267.0	114.0	243.0	0.0	.	35	.	.	Atlas-SNP
SUMF1	285362	hgsc.bcm.edu	hg19	3	4508802	4508802	+	Missense_Mutation	SNP	G	G	T	rs200789939	bycluster;by1000genomes;alternate_allele	TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	SUMF1	NM_001164675	exon1	c.C128A	p.A43E	GACCCCGCGCCCG	.	95.0	37.0	129.0	0.0	.	23	.	G|0.999;A|0.001	Atlas-SNP
CELSR3	1951	hgsc.bcm.edu	hg19	3	48678931	48678931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	CELSR3	NM_001407	exon33	c.T8851C	p.Y2951H	GCCAGTAGGACAG	.	104.0	36.0	122.0	0.0	.	237	.	.	Atlas-SNP
FGFBP1	9982	hgsc.bcm.edu	hg19	4	15937929	15937929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	FGFBP1	NM_005130	exon3	c.G327T	p.E109D	GACTCTCTCATCC	.	39.0	18.0	95.0	0.0	.	26	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79340185	79340185	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	FRAS1	NM_001166133	exon33	c.A4508T	p.Y1503F	TTGTCTACAACAT	.	44.0	18.0	73.0	0.0	.	779	.	.	Atlas-SNP
CDH9	1007	hgsc.bcm.edu	hg19	5	26885790	26885790	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	CDH9	NM_016279	exon11	c.G1815T	p.L605L	AAGGATCAGGGCT	.	206.0	98.0	188.0	0.0	.	305	.	.	Atlas-SNP
SNX18	112574	hgsc.bcm.edu	hg19	5	53839038	53839038	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	SNX18	NM_001102575	exon2	c.C1651T	p.R551X	AGTAGGCGACACG	.	275.0	117.0	265.0	0.0	.	102	.	.	Atlas-SNP
ZNF608	57507	hgsc.bcm.edu	hg19	5	124080294	124080294	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	ZNF608	NM_020747	exon1	c.T389A	p.I130N	CTGCTGATCTCGG	.	74.0	45.0	84.0	0.0	.	117	.	.	Atlas-SNP
PCDHB7	56129	hgsc.bcm.edu	hg19	5	140554567	140554567	+	Silent	SNP	G	G	C	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	PCDHB7	NM_018940	exon1	c.G2151C	p.A717A	CAGGGCGGCCCCG	.	142.0	62.0	139.0	0.0	.	231	.	.	Atlas-SNP
MRS2	57380	hgsc.bcm.edu	hg19	6	24412501	24412501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	MRS2	NM_020662	exon5	c.A466G	p.N156D	TATCGTAATTTAA	.	205.0	98.0	223.0	0.0	.	31	.	.	Atlas-SNP
HIST1H2AE	3012	hgsc.bcm.edu	hg19	6	26217258	26217258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	HIST1H2AE	NM_021052	exon1	c.C56T	p.S19F	CGCGTTCTTCCAG	.	139.0	59.0	141.0	0.0	.	25	.	.	Atlas-SNP
TBX18	9096	hgsc.bcm.edu	hg19	6	85446717	85446717	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	TBX18	NM_001080508	exon8	c.T1510A	p.S504T	TGCTGGAGGGTGA	.	115.0	55.0	111.0	0.0	.	131	.	.	Atlas-SNP
BACH2	60468	hgsc.bcm.edu	hg19	6	90661177	90661177	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	BACH2	NM_021813	exon7	c.C648T	p.T216T	CTCCTTGGTGTCT	.	77.0	31.0	104.0	0.0	.	224	.	.	Atlas-SNP
EPHA7	2045	hgsc.bcm.edu	hg19	6	94120371	94120371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	EPHA7	NM_004440	exon3	c.T680C	p.L227S	TCGACTAAAGAGG	.	154.0	64.0	174.0	0.0	.	251	.	.	Atlas-SNP
ANK1	286	hgsc.bcm.edu	hg19	8	41550170	41550170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	ANK1	NM_001142446	exon32	c.T3977A	p.I1326K	ACCTCTATGTCCC	.	79.0	10.0	46.0	0.0	.	497	.	.	Atlas-SNP
KANK1	23189	hgsc.bcm.edu	hg19	9	711611	711611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	KANK1	NM_001256876	exon7	c.G845A	p.R282Q	AGGTGCGAACCAT	.	41.0	29.0	95.0	0.0	.	231	.	.	Atlas-SNP
SLC44A1	23446	hgsc.bcm.edu	hg19	9	108126972	108126972	+	Silent	SNP	A	A	C	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	SLC44A1	NM_080546	exon10	c.A1224C	p.A408A	AGTGGCAGGAGCT	.	88.0	81.0	143.0	0.0	.	61	.	.	Atlas-SNP
ASTN2	23245	hgsc.bcm.edu	hg19	9	119249699	119249699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	ASTN2	NM_014010	exon19	c.G3283T	p.V1095F	CAGGGACCTCTCC	.	40.0	33.0	78.0	0.0	.	307	.	.	Atlas-SNP
CPEB3	22849	hgsc.bcm.edu	hg19	10	93904825	93904825	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	CPEB3	NM_014912	exon5	c.A1240T	p.S414C	CATGGCTATCATC	.	115.0	36.0	112.0	0.0	.	43	.	.	Atlas-SNP
PIDD	55367	hgsc.bcm.edu	hg19	11	802041	802041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	PIDD	NM_145887	exon7	c.G1226A	p.R409H	ACTTCACGGCAGC	.	71.0	30.0	91.0	0.0	.	76	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1092675	1092675	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	MUC2	NM_002457	exon30	c.C4494A	p.T1498T	AACCACCACTCCC	.	198.0	19.0	257.0	0.0	.	614	.	.	Atlas-SNP
AMBRA1	55626	hgsc.bcm.edu	hg19	11	46456546	46456546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	AMBRA1	NM_001267782	exon15	c.G2683A	p.D895N	TGGCATCATTGTA	.	105.0	50.0	101.0	0.0	.	201	.	.	Atlas-SNP
FOLR4	390243	hgsc.bcm.edu	hg19	11	94040366	94040366	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	FOLR4,NS,carcinoma,0,1	FOLR4	NM_001199206	exon3	c.T384C	p.N128N	TGTGAATGTGCCG	.	104.0	50.0	112.0	0.0	.	31	.	.	Atlas-SNP
DRD2	1813	hgsc.bcm.edu	hg19	11	113288785	113288785	+	Missense_Mutation	SNP	G	G	A	rs201724929		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	DRD2	NM_016574	exon3	c.C359T	p.A120V	ATGCTCGCCGTGC	.	58.0	21.0	68.0	0.0	.	98	.	.	Atlas-SNP
TARBP2	6895	hgsc.bcm.edu	hg19	12	53899546	53899546	+	Silent	SNP	C	C	G	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	TARBP2	NM_134323	exon8	c.C855G	p.G285G	CCTGGGCTCCCTG	.	25.0	21.0	69.0	0.0	.	35	.	.	Atlas-SNP
ACACB	32	hgsc.bcm.edu	hg19	12	109692040	109692040	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	ACACB	NM_001093	exon43	c.A6067G	p.I2023V	GTCCCTATCATCA	.	66.0	52.0	132.0	0.0	.	330	.	.	Atlas-SNP
RPGRIP1	57096	hgsc.bcm.edu	hg19	14	21769132	21769132	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	RPGRIP1	NM_020366	exon3	c.A226T	p.T76S	CTGAGGACCACCT	.	86.0	17.0	126.0	0.0	.	213	.	.	Atlas-SNP
CHD8	57680	hgsc.bcm.edu	hg19	14	21896309	21896309	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	CHD8	NM_001170629	exon3	c.G1320A	p.S440S	TCCCCCCGAATGA	.	93.0	31.0	125.0	0.0	.	339	.	.	Atlas-SNP
NRXN3	9369	hgsc.bcm.edu	hg19	14	79434578	79434578	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	NRXN3	NM_004796	exon11	c.T1912A	p.S638T	GTGGCCTCTCGAG	.	103.0	66.0	124.0	0.0	.	342	.	.	Atlas-SNP
SERPINA5	5104	hgsc.bcm.edu	hg19	14	95053895	95053895	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	SERPINA5	NM_000624	exon3	c.T196G	p.F66V	AGCATCTTCTTCT	.	82.0	49.0	95.0	0.0	.	69	.	.	Atlas-SNP
ARHGAP11A	9824	hgsc.bcm.edu	hg19	15	32925232	32925232	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	ARHGAP11A	NM_199357	exon9	c.A1158G	p.V386V	TCCTGTACTCATT	.	154.0	72.0	134.0	0.0	.	84	.	.	Atlas-SNP
TLN2	83660	hgsc.bcm.edu	hg19	15	62990037	62990037	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	TLN2	NM_015059	exon12	c.G1443T	p.G481G	GGTTGGGCAGATG	.	81.0	37.0	111.0	0.0	.	253	.	.	Atlas-SNP
IGDCC4	57722	hgsc.bcm.edu	hg19	15	65689263	65689263	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	IGDCC4	NM_020962	exon6	c.G906A	p.A302A	GGGCTGCGCGTTG	.	128.0	68.0	128.0	0.0	.	95	.	.	Atlas-SNP
GOLGA6B	55889	hgsc.bcm.edu	hg19	15	72955008	72955008	+	Missense_Mutation	SNP	G	G	C	rs71400917		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	GOLGA6B,NS,malignant_melanoma,0,1	GOLGA6B	NM_018652	exon11	c.G1263C	p.E421D	GGAGGAGAGGCTA	.	66.0	3.0	53.0	0.0	.	30	.	G|1.000;|0.000	Atlas-SNP
AXIN1	8312	hgsc.bcm.edu	hg19	16	360038	360038	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	AXIN1	NM_181050	exon4	c.C1051T	p.Q351X	GGTGCTGCTTACG	.	48.0	39.0	81.0	0.0	.	290	.	.	Atlas-SNP
SERPINF1	5176	hgsc.bcm.edu	hg19	17	1678371	1678371	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	SERPINF1	NM_002615	exon6	c.T663C	p.F221F	AAAGTTTGACTCC	.	43.0	35.0	100.0	0.0	.	31	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578268	7578268	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	TP53_ENST00000545858,colon,carcinoma,-1,1	TP53	NM_000546	exon6	c.T581G	p.L194R	CGGATAAGATGCT	.	117.0	105.0	183.0	1.0	.	33396	.	.	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7720679	7720679	+	Silent	SNP	A	A	G	rs375895814		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	DNAH2,colon,carcinoma,0,1	DNAH2	NM_020877	exon64	c.A9966G	p.G3322G	CATGGGACCCTTC	.	31.0	26.0	46.0	0.0	.	498	.	.	Atlas-SNP
TNFRSF13B	23495	hgsc.bcm.edu	hg19	17	16843680	16843680	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	TNFRSF13B	NM_012452	exon4	c.C591T	p.P197P	TGAGCGGGGCTGG	.	41.0	4.0	121.0	0.0	.	34	.	.	Atlas-SNP
PLCD3	113026	hgsc.bcm.edu	hg19	17	43190626	43190626	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	PLCD3	NM_133373	exon14	c.1995-1G>A	.	CAGCACCTGTGGG	.	42.0	18.0	49.0	0.0	.	78	.	.	Atlas-SNP
SCRN2	90507	hgsc.bcm.edu	hg19	17	45915690	45915690	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	SCRN2	NM_138355	exon7	c.G1065A	p.R355R	GGTATGCCGACGA	.	121.0	47.0	129.0	0.0	.	35	.	.	Atlas-SNP
DCC	1630	hgsc.bcm.edu	hg19	18	50731599	50731599	+	Silent	SNP	G	G	C	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	DCC	NM_005215	exon10	c.G1587C	p.G529G	TCCAGGGCCAGTA	.	105.0	37.0	88.0	0.0	.	360	.	.	Atlas-SNP
TNFRSF11A	8792	hgsc.bcm.edu	hg19	18	60028929	60028929	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	TNFRSF11A	NM_001270949	exon7	c.G633A	p.L211L	TTACTTGCCCGGT	.	160.0	75.0	175.0	0.0	.	51	.	.	Atlas-SNP
PTBP1	5725	hgsc.bcm.edu	hg19	19	804891	804891	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	PTBP1	NM_031990	exon7	c.G669A	p.Q223Q	GTTCCAGGCCCTG	.	69.0	34.0	103.0	0.0	.	43	.	.	Atlas-SNP
EMR1	2015	hgsc.bcm.edu	hg19	19	6896547	6896547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	EMR1	NM_001256252	exon3	c.G233A	p.C78Y	TGCGATGCAAAGG	.	104.0	49.0	104.0	0.0	.	153	.	.	Atlas-SNP
PCP2	126006	hgsc.bcm.edu	hg19	19	7697616	7697616	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	PCP2	NM_174895	exon2	c.A152T	p.Q51L	GTGGTCTGGCCCG	.	32.0	16.0	43.0	0.0	.	6	.	.	Atlas-SNP
OLFM2	93145	hgsc.bcm.edu	hg19	19	9968430	9968430	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	OLFM2	NM_058164	exon3	c.C321T	p.L107L	TGCCCGGAGCCGC	.	119.0	60.0	103.0	0.0	.	42	.	.	Atlas-SNP
ZNF765	91661	hgsc.bcm.edu	hg19	19	53911921	53911921	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	ZNF765	NM_001040185	exon4	c.A1113G	p.T371T	TTTTACATGCCAT	.	125.0	46.0	118.0	0.0	.	61	.	.	Atlas-SNP
DEFB123	245936	hgsc.bcm.edu	hg19	20	30037860	30037860	+	Silent	SNP	T	T	C	rs377702716		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	DEFB123,NS,carcinoma,0,2	DEFB123	NM_153324	exon2	c.T87C	p.Y29Y	TCTTTATGGCAAA	.	99.0	40.0	85.0	0.0	.	7	.	.	Atlas-SNP
COL18A1	80781	hgsc.bcm.edu	hg19	21	46888354	46888354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	COL18A1	NM_030582	exon2	c.C845T	p.T282I	CAGCCACAGAGGG	.	71.0	23.0	88.0	0.0	.	129	.	.	Atlas-SNP
NCF4	4689	hgsc.bcm.edu	hg19	22	37272068	37272068	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	NCF4	NM_013416	exon8	c.T1001A	p.L334X	CCCCCTTAGGGAC	.	140.0	51.0	154.0	0.0	.	66	.	.	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	hg19	X	24381762	24381762	+	Silent	SNP	C	C	T	rs368897164		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	.	NM_001136234	exon1	c.C885T	p.G295G	GAAAGGCAGACCC	.	269.0	229.0	292.0	0.0	.	.	.	.	Atlas-SNP
ND1	10625	hgsc.bcm.edu	hg19	MT	4139	4139	+	Missense_Mutation	SNP	C	C	T	rs368539747		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	.	ENST00000361390	exon1	c.C833T	p.P278L	CATACCCCCGATT	.	50.0	45.0	12.0	0.0	.	.	.	.	Atlas-SNP
RIMS2	9699	hgsc.bcm.edu	hg19	8	104973332	104973332	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	RIMS2	NM_001100117	exon15	c.2740delG	p.D914fs	.	.	178.0	142.0	132.0	0.0	.	1357	.	.	Atlas-INDEL
CENPC1	1060	hgsc.bcm.edu	hg19	4	68379975	68379976	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	CENPC1	NM_001812	exon8	c.1261_1262insA	p.Q421fs	.	.	43.0	15.0	79.0	0.0	.	66	.	.	Atlas-INDEL
ALB	213	hgsc.bcm.edu	hg19	4	74274521	74274524	+	In_Frame_Del	DEL	AAGT	AAGT	-	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	AAGT	AAGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	ALB	NM_000477	exon4	c.480_482del	p.160_161del	.	.	62.0	22.0	119.0	0.0	.	132	.	.	Atlas-INDEL
ODF1	4956	hgsc.bcm.edu	hg19	8	103573034	103573042	+	In_Frame_Del	DEL	CCCGTGCAG	CCCGTGCAG	-	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	CCCGTGCAG	CCCGTGCAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	ODF1,NS,carcinoma,0,1	ODF1	NM_024410	exon2	c.674_682del	p.225_228del	.	.	78.0	58.0	59.0	0.0	.	55	.	.	Atlas-INDEL
ZNF793	390927	hgsc.bcm.edu	hg19	19	38024289	38024289	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AAVU-01A-11D-A40R-10	TCGA-DD-AAVU-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c522957e-6571-4b4e-9ab2-8726a74d13e6	ae0c3d36-3ce4-478c-9a80-7446e1da38b1	.	ZNF793	NM_001013659	exon7	c.221delC	p.P74fs	.	.	131.0	58.0	136.0	0.0	.	50	.	.	Atlas-INDEL
