Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
MAP7D1	55700	hgsc.bcm.edu	hg19	1	36643703	36643703	+	Missense_Mutation	SNP	A	A	G	rs200892098		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.,2	MAP7D1	NM_018067	exon9	c.A1609G	p.K537E	AACGAGAAGGAGT	.	7.0	7.0	1.0	1.0	.	62	.	.	Atlas-SNP
ITGA10	8515	hgsc.bcm.edu	hg19	1	145537466	145537466	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	ITGA10	NM_003637	exon20	c.G2476C	p.V826L	GTGCTGGTATCTA	.	68.0	6.0	110.0	0.0	.	131	.	.	Atlas-SNP
SLAMF9	89886	hgsc.bcm.edu	hg19	1	159923926	159923926	+	Missense_Mutation	SNP	A	A	G	rs147539315		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	SLAMF9	NM_033438	exon1	c.T2C	p.M1T	GCACACATGTCAG	.	36.0	8.0	45.0	0.0	.	41	.	A|1.000;G|0.000	Atlas-SNP
ATL2	64225	hgsc.bcm.edu	hg19	2	38604337	38604337	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	ATL2	NM_001135673	exon1	c.G66A	p.R22R	GCTGGTCCGTCGC	.	162.0	15.0	151.0	0.0	.	49	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613036	73613036	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	ALMS1	NM_015120	exon1	c.G40C	p.E14Q	CTGGAGGAGGAGG	.	331.0	31.0	191.0	0.0	.	384	.	.	Atlas-SNP
C2orf66	401027	hgsc.bcm.edu	hg19	2	197672293	197672293	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	C2orf66	NM_213608	exon2	c.A228T	p.T76T	TGGAAATGTTCCA	.	36.0	6.0	150.0	0.0	.	15	.	.	Atlas-SNP
PRRT3	285368	hgsc.bcm.edu	hg19	3	9989661	9989661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	PRRT3	NM_207351	exon4	c.G1196A	p.R399H	TGGGGGCGCCCCG	.	50.0	12.0	60.0	0.0	.	35	.	.	Atlas-SNP
ZNF35	7584	hgsc.bcm.edu	hg19	3	44692628	44692628	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	ZNF35	NM_003420	exon2	c.G69A	p.E23E	GGAGGAGGAAGAA	.	158.0	16.0	295.0	0.0	.	34	.	.	Atlas-SNP
SLC9C1	285335	hgsc.bcm.edu	hg19	3	111940054	111940054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	.	NM_183061	exon14	c.T1591C	p.Y531H	TCCTGTATTGTCT	.	30.0	5.0	60.0	0.0	.	.	.	.	Atlas-SNP
COPG1	22820	hgsc.bcm.edu	hg19	3	128986867	128986867	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	.	NM_016128	exon16	c.A1632G	p.A544A	TAATGCAGGCTAT	.	52.0	20.0	94.0	0.0	.	.	.	.	Atlas-SNP
MAN2B2	23324	hgsc.bcm.edu	hg19	4	6611736	6611736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	MAN2B2,colon,carcinoma,0,1	MAN2B2	NM_015274	exon13	c.C2218T	p.R740W	ATGCAGCGGAGGC	.	82.0	21.0	132.0	0.0	.	80	.	.	Atlas-SNP
PCDHGB2	56103	hgsc.bcm.edu	hg19	5	140741078	140741078	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	PCDHGB2	NM_018923	exon1	c.T1376C	p.V459A	ACATGGTTCACGT	.	81.0	19.0	118.0	0.0	.	196	.	.	Atlas-SNP
PCDHGA6	56109	hgsc.bcm.edu	hg19	5	140755848	140755848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	PCDHGA6	NM_018919	exon1	c.C2198T	p.A733V	GCTTAGCGAGCAT	.	141.0	36.0	149.0	0.0	.	219	.	.	Atlas-SNP
OR2J3	442186	hgsc.bcm.edu	hg19	6	29080267	29080267	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	OR2J3	NM_001005216	exon1	c.G600T	p.L200L	TGAGCTGACCCTC	.	50.0	14.0	129.0	0.0	.	53	.	.	Atlas-SNP
TRIM10	10107	hgsc.bcm.edu	hg19	6	30121906	30121906	+	Missense_Mutation	SNP	C	C	T	rs137941157	bycluster;byfrequency;alternate_allele	TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	TRIM10	NM_006778	exon7	c.G1286A	p.R429Q	ACCTGCCGGGGCT	.	93.0	16.0	132.0	0.0	.	65	.	C|1.000;A|0.000	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	66042220	66042220	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	EYS	NM_001142801	exon12	c.A1857T	p.I619I	AACTTATATTCTT	.	29.0	6.0	70.0	0.0	.	527	.	.	Atlas-SNP
TBP	6908	hgsc.bcm.edu	hg19	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	TBP	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	36.0	8.0	61.0	0.0	.	58	.	.	Atlas-SNP
RSBN1L	222194	hgsc.bcm.edu	hg19	7	77326048	77326048	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	RSBN1L	NM_198467	exon1	c.T262G	p.F88V	TGGAGCTTTGCCC	.	81.0	27.0	75.0	0.0	.	74	.	.	Atlas-SNP
RUNX1T1	862	hgsc.bcm.edu	hg19	8	93003968	93003968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	RUNX1T1	NM_001198679	exon7	c.C1067T	p.P356L	TGCTGAGGTGGAG	.	101.0	35.0	119.0	0.0	.	516	.	.	Atlas-SNP
TSPYL5	85453	hgsc.bcm.edu	hg19	8	98289975	98289975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	TSPYL5	NM_033512	exon1	c.C98T	p.P33L	TCGCGCGGGGCGT	.	144.0	22.0	61.0	0.0	.	48	.	.	Atlas-SNP
COL15A1	1306	hgsc.bcm.edu	hg19	9	101816900	101816900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	COL15A1	NM_001855	exon32	c.A2993G	p.K998R	GCTCAAAGGGAGA	.	83.0	4.0	218.0	0.0	.	211	.	.	Atlas-SNP
MSANTD3	91283	hgsc.bcm.edu	hg19	9	103204372	103204372	+	Missense_Mutation	SNP	C	C	T	rs139409577		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	MSANTD3	NM_001198805	exon2	c.C152T	p.A51V	GGCAGGCGCTGGC	.	33.0	13.0	90.0	0.0	.	10	.	C|1.000;T|0.000	Atlas-SNP
GPR158	57512	hgsc.bcm.edu	hg19	10	25887911	25887911	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	GPR158	NM_020752	exon11	c.A3356C	p.E1119A	GCGAAGAACTGCC	.	46.0	19.0	108.0	0.0	.	255	.	.	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	hg19	10	49982595	49982595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	WDFY4	NM_020945	exon14	c.G2646T	p.L882F	AGGCTTGCTTGGG	.	58.0	22.0	77.0	0.0	.	205	.	.	Atlas-SNP
PDZD7	79955	hgsc.bcm.edu	hg19	10	102770293	102770293	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	PDZD7	NM_001195263	exon15	c.A2353C	p.S785R	CCCGGCTGCTGCG	.	413.0	20.0	351.0	0.0	.	101	.	.	Atlas-SNP
PDCD11	22984	hgsc.bcm.edu	hg19	10	105203771	105203771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	PDCD11	NM_014976	exon34	c.G5224T	p.A1742S	CAGGCTGCAGCCA	.	42.0	12.0	79.0	0.0	.	160	.	.	Atlas-SNP
MKI67	4288	hgsc.bcm.edu	hg19	10	129914055	129914055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	MKI67	NM_002417	exon7	c.T617C	p.I206T	CTGGAAATTTCTT	.	24.0	4.0	44.0	0.0	.	363	.	.	Atlas-SNP
PYGM	5837	hgsc.bcm.edu	hg19	11	64518935	64518935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	PYGM	NM_005609	exon16	c.G1831A	p.A611T	CAGGTGCAGCCTG	.	70.0	21.0	90.0	0.0	.	77	.	.	Atlas-SNP
CACNA1C	775	hgsc.bcm.edu	hg19	12	2800310	2800310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	CACNA1C	NM_199460	exon50	c.G6611T	p.G2204V	CGCGGGGTCGACC	.	114.0	34.0	175.0	0.0	.	1023	.	.	Atlas-SNP
NACA	4666	hgsc.bcm.edu	hg19	12	57113526	57113526	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	NACA	NM_001113203	exon3	c.G1788A	p.G596G	AGGCTCCCCAAGG	.	77.0	16.0	159.0	0.0	.	131	.	.	Atlas-SNP
CUX2	23316	hgsc.bcm.edu	hg19	12	111772269	111772269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	CUX2	NM_015267	exon19	c.C2951T	p.S984L	GGTCCTCACCATC	.	76.0	11.0	126.0	0.0	.	145	.	.	Atlas-SNP
SPERT	220082	hgsc.bcm.edu	hg19	13	46287798	46287798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	SPERT	NM_152719	exon3	c.G638A	p.R213Q	AGAGCCGGGCCCC	.	38.0	9.0	38.0	0.0	.	54	.	.	Atlas-SNP
WDR90	197335	hgsc.bcm.edu	hg19	16	717526	717526	+	Silent	SNP	C	C	T	rs373944645		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	WDR90	NM_145294	exon41	c.C5184T	p.S1728S	ACCGTCCGCCAGG	.	23.0	10.0	33.0	0.0	.	107	.	.	Atlas-SNP
UNC45B	146862	hgsc.bcm.edu	hg19	17	33513464	33513464	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	UNC45B	NM_173167	exon20	c.C2682G	p.I894M	GGAGATCCTGACT	.	66.0	15.0	127.0	0.0	.	133	.	.	Atlas-SNP
KRT24	192666	hgsc.bcm.edu	hg19	17	38858134	38858134	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	KRT24,NS,lymphoid_neoplasm,0,1	KRT24	NM_019016	exon2	c.G667C	p.A223P	ATCTGGCATTGTC	.	188.0	12.0	500.0	0.0	.	60	.	.	Atlas-SNP
KRT24	192666	hgsc.bcm.edu	hg19	17	38858135	38858135	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.,1	KRT24	NM_019016	exon2	c.T666G	p.N222K	TCTGGCATTGTCA	.	190.0	15.0	496.0	0.0	.	60	.	.	Atlas-SNP
RPTOR	57521	hgsc.bcm.edu	hg19	17	78796082	78796082	+	Silent	SNP	G	G	A	rs375226529		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	RPTOR	NM_001163034	exon8	c.G972A	p.A324A	CATCGCGTGGAAC	.	94.0	29.0	95.0	0.0	.	122	.	.	Atlas-SNP
C3	718	hgsc.bcm.edu	hg19	19	6713207	6713207	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	C3	NM_000064	exon9	c.G996A	p.L332L	TGAGTGCAAGATG	.	72.0	19.0	95.0	0.0	.	192	.	.	Atlas-SNP
CACNA1A	773	hgsc.bcm.edu	hg19	19	13318671	13318671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	CACNA1A	NM_001127222	exon47	c.C6977A	p.A2326E	GCCACCGCCTGCT	.	482.0	23.0	425.0	0.0	.	715	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	38976748	38976748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	RYR1,NS,carcinoma,0,1	RYR1	NM_001042723	exon34	c.C5453T	p.A1818V	GGGAGGCGGTGCG	.	49.0	6.0	99.0	0.0	.	708	.	.	Atlas-SNP
APP	351	hgsc.bcm.edu	hg19	21	27369713	27369713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	APP	NM_000484	exon8	c.A1052G	p.K351R	GTAGTCTTGAGTA	.	60.0	11.0	137.0	0.0	.	90	.	.	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	hg19	1	214819555	214819558	+	Frame_Shift_Del	DEL	TCTG	TCTG	-	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	TCTG	TCTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	CENPF	NM_016343	exon13	c.6641_6644del	p.2214_2215del	.	.	223.0	14.0	332.0	0.0	.	321	.	.	Atlas-INDEL
IQCA1	79781	hgsc.bcm.edu	hg19	2	237327837	237327839	+	In_Frame_Del	DEL	GGG	GGG	-	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	GGG	GGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	IQCA1	NM_001270585	exon8	c.1109_1111del	p.370_371del	.	.	260.0	17.0	501.0	0.0	.	170	.	.	Atlas-INDEL
IQCA1	79781	hgsc.bcm.edu	hg19	2	237327828	237327830	+	In_Frame_Del	DEL	GGC	GGC	-	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	GGC	GGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	IQCA1	NM_001270585	exon8	c.1118_1120del	p.373_374del	.	.	275.0	17.0	508.0	0.0	.	170	.	.	Atlas-INDEL
XIRP2	129446	hgsc.bcm.edu	hg19	2	168105575	168105577	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	TTG	TTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	XIRP2	NM_152381	exon9	c.7672_7674del	p.2558_2558del	.	.	140.0	12.0	299.0	0.0	.	914	.	.	Atlas-INDEL
CCDC18	343099	hgsc.bcm.edu	hg19	1	93672688	93672690	+	In_Frame_Del	DEL	CGG	CGG	-	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	CGG	CGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	CCDC18	NM_206886	exon9	c.941_943del	p.314_315del	.	.	115.0	12.0	479.0	0.0	.	93	.	.	Atlas-INDEL
LSS	4047	hgsc.bcm.edu	hg19	21	47647474	47647475	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	LSS	NM_001145436	exon3	c.311_312insA	p.L104fs	.	.	56.0	13.0	119.0	0.0	.	50	.	.	Atlas-INDEL
HOOK2	29911	hgsc.bcm.edu	hg19	19	12880808	12880808	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AAVW-01A-11D-A40R-10	TCGA-DD-AAVW-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	da6c81eb-ba15-434a-ad41-00e436b1f3da	ded7e2a3-f782-4a5f-88a5-ea073d078eb9	.	HOOK2	NM_001100176	exon11	c.992delT	p.V331fs	.	.	59.0	13.0	41.0	0.0	.	73	.	.	Atlas-INDEL
